Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006980 | XP_003588697.1 | 97.975 | 395 | 8 | 0 | 1 | 395 | 1 | 395 | 0.0 | 812 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006980 | sp|Q9LFM5|YUC4_ARATH | 73.740 | 377 | 97 | 1 | 11 | 387 | 12 | 386 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006980 | G7I6C3 | 97.975 | 395 | 8 | 0 | 1 | 395 | 1 | 395 | 0.0 | 812 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006980 | Msa0015710 | 0.828397 | 9.196955e-55 | -8.615850e-47 |
| Msa0006980 | Msa0016120 | 0.811959 | 5.393314e-51 | -8.615850e-47 |
| Msa0006980 | Msa0019600 | 0.808571 | 2.900650e-50 | -8.615850e-47 |
| Msa0006980 | Msa0055450 | 0.808943 | 2.416238e-50 | -8.615850e-47 |
| Msa0006980 | Msa0080990 | 0.807281 | 5.456644e-50 | -8.615850e-47 |
| Msa0006980 | Msa0109880 | 0.844203 | 8.745661e-59 | -8.615850e-47 |
| Msa0006980 | Msa0111750 | 0.819635 | 1.046973e-52 | -8.615850e-47 |
| Msa0006980 | Msa0124130 | 0.920440 | 1.276880e-87 | -8.615850e-47 |
| Msa0006980 | Msa0141120 | 0.815261 | 1.012087e-51 | -8.615850e-47 |
| Msa0006980 | Msa0149140 | 0.951154 | 3.710698e-109 | -8.615850e-47 |
| Msa0006980 | Msa0152480 | 0.815531 | 8.813630e-52 | -8.615850e-47 |
| Msa0006980 | Msa0152500 | 0.823719 | 1.190814e-53 | -8.615850e-47 |
| Msa0006980 | Msa0156250 | 0.818763 | 1.654525e-52 | -8.615850e-47 |
| Msa0006980 | Msa0212150 | 0.830695 | 2.540876e-55 | -8.615850e-47 |
| Msa0006980 | Msa0215640 | 0.819742 | 9.899519e-53 | -8.615850e-47 |
| Msa0006980 | Msa0239030 | 0.810701 | 1.011418e-50 | -8.615850e-47 |
| Msa0006980 | Msa0252770 | 0.823597 | 1.271257e-53 | -8.615850e-47 |
| Msa0006980 | Msa0289920 | 0.837012 | 6.679251e-57 | -8.615850e-47 |
| Msa0006980 | Msa0306120 | 0.848952 | 4.415515e-60 | -8.615850e-47 |
| Msa0006980 | Msa0316680 | 0.804647 | 1.953438e-49 | -8.615850e-47 |
| Msa0006980 | Msa0322840 | 0.802716 | 4.915438e-49 | -8.615850e-47 |
| Msa0006980 | Msa0322860 | 0.820781 | 5.719845e-53 | -8.615850e-47 |
| Msa0006980 | Msa0329620 | 0.836473 | 9.167455e-57 | -8.615850e-47 |
| Msa0006980 | Msa0333450 | 0.801694 | 7.978745e-49 | -8.615850e-47 |
| Msa0006980 | Msa0333700 | 0.816327 | 5.855050e-52 | -8.615850e-47 |
| Msa0006980 | Msa0343660 | 0.840067 | 1.086827e-57 | -8.615850e-47 |
| Msa0006980 | Msa0344570 | 0.810729 | 9.974360e-51 | -8.615850e-47 |
| Msa0006980 | Msa0351770 | 0.834332 | 3.185843e-56 | -8.615850e-47 |
| Msa0006980 | Msa0359250 | 0.875493 | 2.950511e-68 | -8.615850e-47 |
| Msa0006980 | Msa0384910 | 0.820763 | 5.775276e-53 | -8.615850e-47 |
| Msa0006980 | Msa0392420 | 0.819326 | 1.231794e-52 | -8.615850e-47 |
| Msa0006980 | Msa0392460 | 0.815139 | 1.077269e-51 | -8.615850e-47 |
| Msa0006980 | Msa0392490 | 0.815025 | 1.141979e-51 | -8.615850e-47 |
| Msa0006980 | Msa0406000 | 0.872472 | 3.097320e-67 | -8.615850e-47 |
| Msa0006980 | Msa0424330 | 0.824263 | 8.873117e-54 | -8.615850e-47 |
| Msa0006980 | Msa0424340 | 0.862818 | 3.870626e-64 | -8.615850e-47 |
| Msa0006980 | Msa0424350 | 0.849190 | 3.792018e-60 | -8.615850e-47 |
| Msa0006980 | Msa0441590 | 0.823009 | 1.743911e-53 | -8.615850e-47 |
| Msa0006980 | Msa0451400 | 0.870685 | 1.210696e-66 | -8.615850e-47 |
| Msa0006980 | Msa0487570 | 0.824032 | 1.005361e-53 | -8.615850e-47 |
| Msa0006980 | Msa0487630 | 0.820601 | 6.292528e-53 | -8.615850e-47 |
| Msa0006980 | Msa0492190 | 0.863946 | 1.730622e-64 | -8.615850e-47 |
| Msa0006980 | Msa0515950 | 0.831809 | 1.352510e-55 | -8.615850e-47 |
| Msa0006980 | Msa0534930 | 0.805786 | 1.128154e-49 | -8.615850e-47 |
| Msa0006980 | Msa0535040 | 0.802396 | 5.721772e-49 | -8.615850e-47 |
| Msa0006980 | Msa0537920 | 0.813048 | 3.117444e-51 | -8.615850e-47 |
| Msa0006980 | Msa0575740 | 0.808679 | 2.750840e-50 | -8.615850e-47 |
| Msa0006980 | Msa0591790 | 0.841449 | 4.720816e-58 | -8.615850e-47 |
| Msa0006980 | Msa0594090 | 0.823056 | 1.701349e-53 | -8.615850e-47 |
| Msa0006980 | Msa0641250 | 0.819207 | 1.311348e-52 | -8.615850e-47 |
| Msa0006980 | Msa0669840 | 0.856144 | 3.923788e-62 | -8.615850e-47 |
| Msa0006980 | Msa0707220 | 0.803300 | 3.722727e-49 | -8.615850e-47 |
| Msa0006980 | Msa0709450 | 0.824761 | 6.776170e-54 | -8.615850e-47 |
| Msa0006980 | Msa0725860 | 0.829683 | 4.488189e-55 | -8.615850e-47 |
| Msa0006980 | Msa0739580 | 0.876108 | 1.814690e-68 | -8.615850e-47 |
| Msa0006980 | Msa0748000 | 0.806243 | 9.042031e-50 | -8.615850e-47 |
| Msa0006980 | Msa0748400 | 0.803649 | 3.151848e-49 | -8.615850e-47 |
| Msa0006980 | Msa0751890 | 0.806855 | 6.715948e-50 | -8.615850e-47 |
| Msa0006980 | Msa0752840 | 0.814554 | 1.452578e-51 | -8.615850e-47 |
| Msa0006980 | Msa0770290 | 0.800518 | 1.388099e-48 | -8.615850e-47 |
| Msa0006980 | Msa0782360 | 0.845286 | 4.465388e-59 | -8.615850e-47 |
| Msa0006980 | Msa0819890 | 0.808047 | 3.751575e-50 | -8.615850e-47 |
| Msa0006980 | Msa0819900 | 0.811200 | 7.885459e-51 | -8.615850e-47 |
| Msa0006980 | Msa0828830 | 0.839113 | 1.924407e-57 | -8.615850e-47 |
| Msa0006980 | Msa0831940 | 0.808657 | 2.781206e-50 | -8.615850e-47 |
| Msa0006980 | Msa0840500 | 0.800033 | 1.742565e-48 | -8.615850e-47 |
| Msa0006980 | Msa0851020 | 0.807111 | 5.928058e-50 | -8.615850e-47 |
| Msa0006980 | Msa0860160 | 0.804087 | 2.555973e-49 | -8.615850e-47 |
| Msa0006980 | Msa0860280 | 0.851751 | 7.238474e-61 | -8.615850e-47 |
| Msa0006980 | Msa0867350 | 0.852791 | 3.661325e-61 | -8.615850e-47 |
| Msa0006980 | Msa0898730 | 0.868603 | 5.773813e-66 | -8.615850e-47 |
| Msa0006980 | Msa0916640 | 0.811186 | 7.939667e-51 | -8.615850e-47 |
| Msa0006980 | Msa0922750 | 0.808527 | 2.964943e-50 | -8.615850e-47 |
| Msa0006980 | Msa0929870 | 0.810660 | 1.032096e-50 | -8.615850e-47 |
| Msa0006980 | Msa0961560 | 0.809974 | 1.451144e-50 | -8.615850e-47 |
| Msa0006980 | Msa0996270 | 0.822979 | 1.772505e-53 | -8.615850e-47 |
| Msa0006980 | Msa0999300 | 0.854940 | 8.808047e-62 | -8.615850e-47 |
| Msa0006980 | Msa0999320 | 0.808274 | 3.356109e-50 | -8.615850e-47 |
| Msa0006980 | Msa0999360 | 0.801266 | 9.766248e-49 | -8.615850e-47 |
| Msa0006980 | Msa0999410 | 0.805234 | 1.472709e-49 | -8.615850e-47 |
| Msa0006980 | Msa1001870 | 0.809508 | 1.828180e-50 | -8.615850e-47 |
| Msa0006980 | Msa1001890 | 0.834150 | 3.539038e-56 | -8.615850e-47 |
| Msa0006980 | Msa1037770 | 0.815626 | 8.395838e-52 | -8.615850e-47 |
| Msa0006980 | Msa1037890 | 0.817164 | 3.800149e-52 | -8.615850e-47 |
| Msa0006980 | Msa1037900 | 0.826209 | 3.076249e-54 | -8.615850e-47 |
| Msa0006980 | Msa1037910 | 0.800442 | 1.438809e-48 | -8.615850e-47 |
| Msa0006980 | Msa1081570 | 0.810551 | 1.089651e-50 | -8.615850e-47 |
| Msa0006980 | Msa1084520 | 0.862065 | 6.599239e-64 | -8.615850e-47 |
| Msa0006980 | Msa1125810 | 0.845122 | 4.944471e-59 | -8.615850e-47 |
| Msa0006980 | Msa1127140 | 0.808588 | 2.877626e-50 | -8.615850e-47 |
| Msa0006980 | Msa1129960 | 0.814545 | 1.458728e-51 | -8.615850e-47 |
| Msa0006980 | Msa1129970 | 0.811388 | 7.177165e-51 | -8.615850e-47 |
| Msa0006980 | Msa1135380 | 0.800471 | 1.419330e-48 | -8.615850e-47 |
| Msa0006980 | Msa1145020 | 0.819269 | 1.268990e-52 | -8.615850e-47 |
| Msa0006980 | Msa1171310 | 0.845054 | 5.158611e-59 | -8.615850e-47 |
| Msa0006980 | Msa1200440 | 0.800154 | 1.646657e-48 | -8.615850e-47 |
| Msa0006980 | Msa1201110 | 0.813177 | 2.920681e-51 | -8.615850e-47 |
| Msa0006980 | Msa1201160 | 0.840848 | 6.788783e-58 | -8.615850e-47 |
| Msa0006980 | Msa1228190 | 0.837384 | 5.365519e-57 | -8.615850e-47 |
| Msa0006980 | Msa1271260 | 0.825290 | 5.081781e-54 | -8.615850e-47 |
| Msa0006980 | Msa1294290 | 0.833826 | 4.266357e-56 | -8.615850e-47 |
| Msa0006980 | Msa1305510 | 0.846095 | 2.693446e-59 | -8.615850e-47 |
| Msa0006980 | Msa1316540 | 0.832337 | 1.001122e-55 | -8.615850e-47 |
| Msa0006980 | Msa1339580 | 0.801034 | 1.089140e-48 | -8.615850e-47 |
| Msa0006980 | Msa1369040 | 0.810706 | 1.008994e-50 | -8.615850e-47 |
| Msa0006980 | Msa1374550 | 0.802650 | 5.073119e-49 | -8.615850e-47 |
| Msa0006980 | Msa1378870 | 0.804972 | 1.670777e-49 | -8.615850e-47 |
| Msa0006980 | Msa1379970 | 0.802161 | 6.396658e-49 | -8.615850e-47 |
| Msa0006980 | Msa1406780 | 0.862827 | 3.845937e-64 | -8.615850e-47 |
| Msa0006980 | Msa1420060 | 0.809638 | 1.714402e-50 | -8.615850e-47 |
| Msa0006980 | Msa1421550 | 0.848697 | 5.194850e-60 | -8.615850e-47 |
| Msa0006980 | Msa1423460 | 0.802749 | 4.840234e-49 | -8.615850e-47 |
| Msa0006980 | Msa1431850 | 0.868397 | 6.732506e-66 | -8.615850e-47 |
| Msa0006980 | Msa1456730 | 0.829541 | 4.858050e-55 | -8.615850e-47 |
| Msa0006980 | Msa1461060 | 0.811992 | 5.304769e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006980 | MtrunA17_Chr1g0148801 | 97.975 | 395 | 8 | 0 | 1 | 395 | 1 | 395 | 0.0 | 812 |
| Msa0006980 | MtrunA17_Chr6g0485621 | 60.668 | 389 | 145 | 2 | 13 | 393 | 29 | 417 | 0.0 | 514 |
| Msa0006980 | MtrunA17_Chr7g0262591 | 58.005 | 381 | 157 | 2 | 9 | 388 | 17 | 395 | 1.02e-177 | 501 |
| Msa0006980 | MtrunA17_Chr1g0147221 | 62.078 | 385 | 142 | 2 | 9 | 389 | 35 | 419 | 1.54e-177 | 501 |
| Msa0006980 | MtrunA17_Chr1g0182991 | 58.225 | 383 | 157 | 2 | 9 | 388 | 18 | 400 | 2.82e-175 | 495 |
| Msa0006980 | MtrunA17_Chr1g0169111 | 57.216 | 388 | 160 | 1 | 7 | 388 | 93 | 480 | 2.28e-173 | 493 |
| Msa0006980 | MtrunA17_Chr3g0139441 | 59.788 | 378 | 147 | 3 | 11 | 383 | 34 | 411 | 3.00e-171 | 484 |
| Msa0006980 | MtrunA17_Chr7g0262471 | 54.575 | 306 | 136 | 2 | 84 | 388 | 213 | 516 | 4.80e-125 | 371 |
| Msa0006980 | MtrunA17_Chr7g0268621 | 44.652 | 374 | 196 | 5 | 17 | 384 | 7 | 375 | 4.76e-115 | 340 |
| Msa0006980 | MtrunA17_Chr8g0350371 | 45.213 | 376 | 195 | 4 | 17 | 386 | 7 | 377 | 5.43e-115 | 340 |
| Msa0006980 | MtrunA17_Chr7g0268611 | 42.368 | 380 | 208 | 4 | 17 | 390 | 9 | 383 | 3.97e-113 | 335 |
| Msa0006980 | MtrunA17_Chr5g0412881 | 44.032 | 377 | 200 | 5 | 17 | 387 | 7 | 378 | 1.63e-112 | 334 |
| Msa0006980 | MtrunA17_Chr3g0125701 | 42.932 | 382 | 207 | 4 | 17 | 392 | 8 | 384 | 6.47e-112 | 333 |
| Msa0006980 | MtrunA17_Chr3g0125691 | 42.932 | 382 | 207 | 4 | 17 | 392 | 8 | 384 | 9.74e-112 | 332 |
| Msa0006980 | MtrunA17_Chr3g0125711 | 42.257 | 381 | 209 | 4 | 17 | 391 | 8 | 383 | 2.53e-109 | 326 |
| Msa0006980 | MtrunA17_Chr4g0025641 | 41.509 | 212 | 119 | 2 | 5 | 211 | 4 | 215 | 1.61e-53 | 177 |
| Msa0006980 | MtrunA17_Chr4g0025651 | 42.857 | 161 | 89 | 3 | 226 | 384 | 11 | 170 | 7.13e-40 | 140 |
| Msa0006980 | MtrunA17_Chr3g0129991 | 39.496 | 119 | 68 | 2 | 74 | 188 | 1 | 119 | 2.48e-25 | 99.4 |
| Msa0006980 | MtrunA17_Chr8g0352461 | 24.545 | 220 | 135 | 7 | 18 | 208 | 6 | 223 | 5.07e-17 | 82.4 |
| Msa0006980 | MtrunA17_Chr2g0304651 | 25.098 | 255 | 142 | 12 | 18 | 230 | 7 | 254 | 1.81e-14 | 75.1 |
| Msa0006980 | MtrunA17_Chr8g0352481 | 23.301 | 206 | 132 | 4 | 18 | 197 | 6 | 211 | 6.56e-14 | 72.8 |
| Msa0006980 | MtrunA17_Chr2g0304721 | 26.772 | 254 | 137 | 11 | 18 | 229 | 7 | 253 | 6.64e-14 | 73.2 |
| Msa0006980 | MtrunA17_Chr4g0070101 | 23.864 | 352 | 195 | 15 | 40 | 325 | 38 | 382 | 3.48e-12 | 67.8 |
| Msa0006980 | MtrunA17_Chr4g0070121 | 29.193 | 161 | 83 | 7 | 40 | 169 | 38 | 198 | 3.92e-11 | 62.8 |
| Msa0006980 | MtrunA17_Chr2g0286701 | 25.792 | 221 | 122 | 9 | 18 | 200 | 16 | 232 | 9.05e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006980 | AT5G11320.1 | 73.740 | 377 | 97 | 1 | 11 | 387 | 12 | 386 | 0.0 | 592 |
| Msa0006980 | AT4G32540.1 | 65.699 | 379 | 128 | 2 | 11 | 388 | 16 | 393 | 0.0 | 549 |
| Msa0006980 | AT4G32540.2 | 65.617 | 381 | 127 | 3 | 11 | 388 | 16 | 395 | 0.0 | 545 |
| Msa0006980 | AT5G11320.2 | 72.531 | 324 | 87 | 1 | 11 | 334 | 12 | 333 | 6.23e-178 | 499 |
| Msa0006980 | AT4G13260.1 | 60.256 | 390 | 150 | 2 | 2 | 386 | 14 | 403 | 3.53e-177 | 500 |
| Msa0006980 | AT1G04610.1 | 57.364 | 387 | 158 | 1 | 9 | 388 | 30 | 416 | 2.15e-174 | 493 |
| Msa0006980 | AT1G04180.1 | 57.990 | 388 | 159 | 3 | 4 | 388 | 14 | 400 | 1.15e-173 | 491 |
| Msa0006980 | AT5G43890.1 | 55.527 | 389 | 167 | 2 | 6 | 388 | 15 | 403 | 7.73e-171 | 484 |
| Msa0006980 | AT4G28720.1 | 56.072 | 387 | 163 | 2 | 9 | 388 | 18 | 404 | 9.90e-170 | 481 |
| Msa0006980 | AT5G25620.2 | 58.312 | 391 | 157 | 4 | 10 | 395 | 27 | 416 | 2.75e-169 | 481 |
| Msa0006980 | AT5G25620.1 | 59.115 | 384 | 151 | 4 | 10 | 388 | 27 | 409 | 8.92e-169 | 478 |
| Msa0006980 | AT2G33230.1 | 57.106 | 387 | 158 | 2 | 9 | 388 | 25 | 410 | 3.23e-167 | 475 |
| Msa0006980 | AT4G13260.2 | 60.269 | 297 | 114 | 1 | 2 | 294 | 14 | 310 | 6.25e-137 | 394 |
| Msa0006980 | AT4G13260.3 | 57.931 | 290 | 117 | 2 | 102 | 386 | 11 | 300 | 3.49e-117 | 343 |
| Msa0006980 | AT1G21430.1 | 44.892 | 372 | 195 | 4 | 17 | 383 | 10 | 376 | 1.61e-116 | 345 |
| Msa0006980 | AT1G48910.1 | 42.820 | 383 | 206 | 5 | 17 | 392 | 6 | 382 | 4.96e-115 | 340 |
| Msa0006980 | AT1G19250.1 | 24.181 | 397 | 209 | 16 | 18 | 334 | 15 | 399 | 1.17e-15 | 79.0 |
| Msa0006980 | AT1G65860.1 | 24.336 | 226 | 135 | 8 | 18 | 210 | 15 | 237 | 1.60e-12 | 69.3 |
| Msa0006980 | AT5G07800.1 | 21.739 | 230 | 142 | 6 | 18 | 209 | 18 | 247 | 2.54e-12 | 68.6 |
| Msa0006980 | AT1G62560.1 | 23.009 | 226 | 135 | 7 | 18 | 208 | 15 | 236 | 8.03e-12 | 67.0 |
| Msa0006980 | AT1G62560.2 | 23.009 | 226 | 135 | 7 | 18 | 208 | 15 | 236 | 9.87e-12 | 66.6 |
Find 64 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTCAAGTTCTCAAATT+TGG | 0.134264 | 1_1:-9998152 | Msa0006980:CDS |
| GTCATTGGTTGTGGGAATTC+TGG | 0.224967 | 1_1:-9997952 | Msa0006980:CDS |
| TTCTGGAATGGAAGTTAGTT+TGG | 0.279463 | 1_1:-9997935 | Msa0006980:CDS |
| GTTAGTTTCAAGCTTCTTCT+TGG | 0.280395 | 1_1:-9996986 | Msa0006980:CDS |
| TAGCTATGGGATTATATAAA+TGG | 0.285172 | 1_1:-9997041 | Msa0006980:CDS |
| AATTAAATCCGGTAACATTA+AGG | 0.303146 | 1_1:-9996860 | Msa0006980:intron |
| GTTGCAAGTTTGAGTTCTAT+TGG | 0.313027 | 1_1:+9996922 | None:intergenic |
| ATGTTTGGTTTCTCAACATA+TGG | 0.323559 | 1_1:-9997066 | Msa0006980:CDS |
| CATACAAGTGATTATAAATC+TGG | 0.355020 | 1_1:-9998003 | Msa0006980:CDS |
| GATGCAATAATCTTAGCAAC+AGG | 0.380414 | 1_1:-9996665 | Msa0006980:CDS |
| TAATCACTTGTATGAGCAAC+AGG | 0.388008 | 1_1:+9998012 | None:intergenic |
| GCAAAGTGTGTATGGATTCA+TGG | 0.396734 | 1_1:-9998474 | Msa0006980:CDS |
| GTAACATACCTTAATGTTAC+CGG | 0.400738 | 1_1:+9996852 | None:intergenic |
| ATAGTAGGTGCTGGTCCTTC+AGG | 0.401110 | 1_1:-9998444 | Msa0006980:CDS |
| ACACAATGCTATGCCTCATT+TGG | 0.405714 | 1_1:-9997902 | Msa0006980:CDS |
| CCTTGGCTTATTGTTGCTAC+TGG | 0.412409 | 1_1:-9998090 | Msa0006980:CDS |
| TTAGTTTCAAGCTTCTTCTT+GGG | 0.427173 | 1_1:-9996985 | Msa0006980:CDS |
| TGTTCCATACCATGAATTGT+TGG | 0.436540 | 1_1:+9998045 | None:intergenic |
| ATTCTTCCAAGAGATATGTT+TGG | 0.437726 | 1_1:-9997081 | Msa0006980:CDS |
| GGTATCAAGAGGCCTAAAAC+TGG | 0.451158 | 1_1:-9996946 | Msa0006980:CDS |
| ACAAGAGCAATGTGCCTACT+TGG | 0.453063 | 1_1:-9996640 | Msa0006980:CDS |
| GGACCAGCACCTACTATGAT+AGG | 0.457137 | 1_1:+9998450 | None:intergenic |
| GTTTGAGGAAAACTCATCAT+AGG | 0.461046 | 1_1:+9998282 | None:intergenic |
| GAGAAACCAAACATATCTCT+TGG | 0.462714 | 1_1:+9997075 | None:intergenic |
| TTGGGAAACACCAATCACTA+TGG | 0.465852 | 1_1:-9996967 | Msa0006980:CDS |
| ATAGAACTCAAACTTGCAAC+AGG | 0.466421 | 1_1:-9996919 | Msa0006980:CDS |
| CAAATAGCACAAATTAAATC+CGG | 0.476052 | 1_1:-9996871 | Msa0006980:CDS |
| CTGAAGATATTACTAATCAA+TGG | 0.476187 | 1_1:-9995962 | Msa0006980:CDS |
| GTGAAAGAGATAACAAGAAA+TGG | 0.481980 | 1_1:-9996722 | Msa0006980:CDS |
| GTGATTGCATAGCTTCACTA+TGG | 0.487978 | 1_1:-9998362 | Msa0006980:CDS |
| ATCACTTTGATATTCATCCT+AGG | 0.490915 | 1_1:-9998203 | Msa0006980:CDS |
| CCTCTTGATACCATAGTGAT+TGG | 0.496998 | 1_1:+9996957 | None:intergenic |
| CCCTTTCCTCATGGTTGGAA+AGG | 0.498580 | 1_1:-9996059 | Msa0006980:CDS |
| CTCAACATATGGAATAGCTA+TGG | 0.500774 | 1_1:-9997055 | Msa0006980:CDS |
| AAACACCCTTTCCTCATGGT+TGG | 0.503476 | 1_1:-9996064 | Msa0006980:CDS |
| CCTTTCCAACCATGAGGAAA+GGG | 0.506085 | 1_1:+9996059 | None:intergenic |
| ACATCAGTTCATTTCCTACA+TGG | 0.512049 | 1_1:-9998238 | Msa0006980:CDS |
| ATTCATGGACCTATCATAGT+AGG | 0.515217 | 1_1:-9998459 | Msa0006980:CDS |
| TCAACATATGGAATAGCTAT+GGG | 0.521973 | 1_1:-9997054 | Msa0006980:CDS |
| GAGTTTCGTGCAACCAAATG+AGG | 0.533241 | 1_1:+9997889 | None:intergenic |
| TTCAAGTTCTCAAATTTGGA+TGG | 0.536810 | 1_1:-9998148 | Msa0006980:CDS |
| GGACCTATCATAGTAGGTGC+TGG | 0.547397 | 1_1:-9998453 | Msa0006980:CDS |
| AAAACTCCTGTACTTGATGT+TGG | 0.551364 | 1_1:-9996895 | Msa0006980:CDS |
| GGATACTTAGGAAATGTTTG+AGG | 0.552505 | 1_1:+9998267 | None:intergenic |
| ACCTTTCCAACCATGAGGAA+AGG | 0.554382 | 1_1:+9996058 | None:intergenic |
| GAGCAAGGATTGTATACAGT+GGG | 0.564264 | 1_1:-9996035 | Msa0006980:CDS |
| TTCACAAGAAGAGGTCTACA+TGG | 0.580526 | 1_1:-9996011 | Msa0006980:CDS |
| AATATCAAAGTGATCAGCAT+AGG | 0.584130 | 1_1:+9998212 | None:intergenic |
| ATTTGACCAACATCAAGTAC+AGG | 0.585749 | 1_1:+9996889 | None:intergenic |
| CAATGTGCCTACTTGGCTCA+AGG | 0.592907 | 1_1:-9996633 | Msa0006980:intron |
| AGAACAGTTTGATTAAACCT+AGG | 0.595686 | 1_1:+9998186 | None:intergenic |
| ACAGTGGGTTTCACAAGAAG+AGG | 0.597945 | 1_1:-9996020 | Msa0006980:CDS |
| CATGGTTGGAAAGGTGAGCA+AGG | 0.614511 | 1_1:-9996050 | Msa0006980:CDS |
| TGGTTGTGGGAATTCTGGAA+TGG | 0.619937 | 1_1:-9997947 | Msa0006980:CDS |
| GCTGCTTGTTTATCAGAACA+AGG | 0.634289 | 1_1:-9998411 | Msa0006980:CDS |
| CTTCTCTCAAGAATGAGACT+CGG | 0.636587 | 1_1:+9998384 | None:intergenic |
| TGCTCACCTTTCCAACCATG+AGG | 0.637968 | 1_1:+9996053 | None:intergenic |
| TTAATATTGTAGGTGATGGA+AGG | 0.640132 | 1_1:-9996746 | Msa0006980:intron |
| CCAATCACTATGGTATCAAG+AGG | 0.641108 | 1_1:-9996957 | Msa0006980:CDS |
| CCAGTAGCAACAATAAGCCA+AGG | 0.647996 | 1_1:+9998090 | None:intergenic |
| GCAGCTACTGCTATACCTGA+AGG | 0.661207 | 1_1:+9998429 | None:intergenic |
| ATGCAATAATCTTAGCAACA+GGG | 0.685349 | 1_1:-9996664 | Msa0006980:CDS |
| ATCAGCATAGGATTCCATGT+AGG | 0.688016 | 1_1:+9998224 | None:intergenic |
| TGAGCAAGGATTGTATACAG+TGG | 0.697920 | 1_1:-9996036 | Msa0006980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATTAATAAATTTATT+AGG | - | chr1_1:9997609-9997628 | Msa0006980:intron | 0.0% |
| !! | TGATATTATAAAAAAAAATG+CGG | - | chr1_1:9996613-9996632 | Msa0006980:intron | 10.0% |
| !!! | TTTGATATGTATATTTTTTT+AGG | - | chr1_1:9997644-9997663 | Msa0006980:intron | 10.0% |
| !!! | ATTTTTTTTTTTATTGATTC+AGG | - | chr1_1:9998313-9998332 | Msa0006980:CDS | 10.0% |
| !!! | TTTTTTTTTTTATTGATTCA+GGG | - | chr1_1:9998314-9998333 | Msa0006980:CDS | 10.0% |
| !! | AAAGAAATATTAAATGATGA+AGG | + | chr1_1:9996950-9996969 | None:intergenic | 15.0% |
| !! | ATTATTAAAATTACCCAAAT+GGG | + | chr1_1:9997267-9997286 | None:intergenic | 15.0% |
| !!! | GCAATATTTTATATGATTTA+AGG | - | chr1_1:9997324-9997343 | Msa0006980:intron | 15.0% |
| !!! | AAGAATAGTACTTTTTAAAA+GGG | + | chr1_1:9998188-9998207 | None:intergenic | 15.0% |
| !!! | AAAGAATAGTACTTTTTAAA+AGG | + | chr1_1:9998189-9998208 | None:intergenic | 15.0% |
| !!! | TAGGTAAATGAAGTTTTAAA+CGG | + | chr1_1:9996114-9996133 | None:intergenic | 20.0% |
| !! | TTCTGAGTACAAAAATAAAA+AGG | - | chr1_1:9996453-9996472 | Msa0006980:intron | 20.0% |
| !!! | GTACAAAAATAAAAAGGTTT+TGG | - | chr1_1:9996459-9996478 | Msa0006980:intron | 20.0% |
| !! | TTGAAATTCGAAAGAAAAAA+GGG | + | chr1_1:9996578-9996597 | None:intergenic | 20.0% |
| !! | ATTGAAATTCGAAAGAAAAA+AGG | + | chr1_1:9996579-9996598 | None:intergenic | 20.0% |
| !! | TAAATAATCAAGGGTAATAA+AGG | - | chr1_1:9996990-9997009 | Msa0006980:CDS | 20.0% |
| !! | AAATGACAATTAAAAAGGAA+CGG | - | chr1_1:9997081-9997100 | Msa0006980:CDS | 20.0% |
| !! | ATTGTTTAGTACTTAAAATG+AGG | - | chr1_1:9997221-9997240 | Msa0006980:intron | 20.0% |
| !!! | ATATGTTATTTTTTCCCATT+TGG | - | chr1_1:9997250-9997269 | Msa0006980:intron | 20.0% |
| !!! | TATGTTATTTTTTCCCATTT+GGG | - | chr1_1:9997251-9997270 | Msa0006980:intron | 20.0% |
| !! | GATTATTAAAATTACCCAAA+TGG | + | chr1_1:9997268-9997287 | None:intergenic | 20.0% |
| !!! | AACTTGTCTACTAATTTTAA+TGG | + | chr1_1:9997421-9997440 | None:intergenic | 20.0% |
| !!! | TATGTATATTTTTTTAGGCT+AGG | - | chr1_1:9997649-9997668 | Msa0006980:intron | 20.0% |
| !! | AAAGAATAAAATCAGTTTCT+TGG | - | chr1_1:9997961-9997980 | Msa0006980:CDS | 20.0% |
| !!! | ATAAAACAGTACTAAACTTT+TGG | - | chr1_1:9998214-9998233 | Msa0006980:CDS | 20.0% |
| !!! | AATGATTTTTTCACTAAAGA+TGG | - | chr1_1:9998338-9998357 | Msa0006980:CDS | 20.0% |
| !! | TTGATTCAAGTTCTCAAATT+TGG | - | chr1_1:9996281-9996300 | Msa0006980:intron | 25.0% |
| !! | ATTTTCAGTATTTTTCACCT+TGG | - | chr1_1:9996326-9996345 | Msa0006980:intron | 25.0% |
| ! | CATACAAGTGATTATAAATC+TGG | - | chr1_1:9996430-9996449 | Msa0006980:intron | 25.0% |
| !!! | AATAAAAAGGTTTTGGTCAT+TGG | - | chr1_1:9996466-9996485 | Msa0006980:intron | 25.0% |
| ! | AAAAAAAATGCGGTTTAATG+TGG | - | chr1_1:9996623-9996642 | Msa0006980:intron | 25.0% |
| ! | TTAATACATGTTTCGATTCA+TGG | - | chr1_1:9996706-9996725 | Msa0006980:CDS | 25.0% |
| ! | AAATCACGACAAAAAAATGA+TGG | + | chr1_1:9996776-9996795 | None:intergenic | 25.0% |
| ! | TCTCTGCAATAAATAATCAA+GGG | - | chr1_1:9996981-9997000 | Msa0006980:CDS | 25.0% |
| ! | CTGCAAAATGACAATTAAAA+AGG | - | chr1_1:9997076-9997095 | Msa0006980:CDS | 25.0% |
| ! | TTTAATAAGGTCACTCATAA+AGG | - | chr1_1:9997157-9997176 | Msa0006980:intron | 25.0% |
| ! | TAGCTATGGGATTATATAAA+TGG | - | chr1_1:9997392-9997411 | Msa0006980:intron | 25.0% |
| ! | CAAATAGCACAAATTAAATC+CGG | - | chr1_1:9997562-9997581 | Msa0006980:intron | 25.0% |
| ! | AATTAAATCCGGTAACATTA+AGG | - | chr1_1:9997573-9997592 | Msa0006980:intron | 25.0% |
| !!! | TTTTTTAGGCTAGGATTAAT+TGG | - | chr1_1:9997658-9997677 | Msa0006980:intron | 25.0% |
| !!! | TTTTTAGGCTAGGATTAATT+GGG | - | chr1_1:9997659-9997678 | Msa0006980:intron | 25.0% |
| ! | TTGGGATTGATTAATATTGT+AGG | - | chr1_1:9997677-9997696 | Msa0006980:intron | 25.0% |
| ! | TTGATTAATATTGTAGGTGA+TGG | - | chr1_1:9997683-9997702 | Msa0006980:intron | 25.0% |
| !! | AAGAAATGGTGCAAAATTTT+TGG | - | chr1_1:9997725-9997744 | Msa0006980:intron | 25.0% |
| !! | TGTTTTTCTCTTCTTTTACA+TGG | - | chr1_1:9998278-9998297 | Msa0006980:CDS | 25.0% |
| !!! | AATATCTTCAGCTATTTTGA+TGG | + | chr1_1:9998462-9998481 | None:intergenic | 25.0% |
| ! | CTGAAGATATTACTAATCAA+TGG | - | chr1_1:9998471-9998490 | Msa0006980:CDS | 25.0% |
| !!! | CACTTTGCTTTTTCTTTGAA+AGG | + | chr1_1:9995947-9995966 | None:intergenic | 30.0% |
| AAGAAAAAGCAAAGTGTGTA+TGG | - | chr1_1:9995951-9995970 | Msa0006980:CDS | 30.0% | |
| !!! | ATGAAGTTTTAAACGGTCAT+AGG | + | chr1_1:9996107-9996126 | None:intergenic | 30.0% |
| GGTAGTTCACAAAAATGTTT+AGG | + | chr1_1:9996133-9996152 | None:intergenic | 30.0% | |
| ! | TGATGTTTTGTAGGATACTT+AGG | + | chr1_1:9996181-9996200 | None:intergenic | 30.0% |
| ! | GAAATGAACTGATGTTTTGT+AGG | + | chr1_1:9996190-9996209 | None:intergenic | 30.0% |
| AATATCAAAGTGATCAGCAT+AGG | + | chr1_1:9996224-9996243 | None:intergenic | 30.0% | |
| ATCACTTTGATATTCATCCT+AGG | - | chr1_1:9996230-9996249 | Msa0006980:intron | 30.0% | |
| AGAACAGTTTGATTAAACCT+AGG | + | chr1_1:9996250-9996269 | None:intergenic | 30.0% | |
| ! | TTCAAGTTCTCAAATTTGGA+TGG | - | chr1_1:9996285-9996304 | Msa0006980:intron | 30.0% |
| ! | TTTTCCAACAATTCATGGTA+TGG | - | chr1_1:9996384-9996403 | Msa0006980:intron | 30.0% |
| ! | GATGGTTTTTGACAAAATTG+CGG | + | chr1_1:9996758-9996777 | None:intergenic | 30.0% |
| !! | TAGCTAGAACTTTGAAATGA+CGG | + | chr1_1:9996810-9996829 | None:intergenic | 30.0% |
| AAGTGACCATTAAAAAGGAA+CGG | + | chr1_1:9996847-9996866 | None:intergenic | 30.0% | |
| !! | TCCTTTTTAATGGTCACTTT+TGG | - | chr1_1:9996848-9996867 | Msa0006980:intron | 30.0% |
| !!! | CCTTTTTAATGGTCACTTTT+GGG | - | chr1_1:9996849-9996868 | Msa0006980:intron | 30.0% |
| CTCTCTGCAATAAATAATCA+AGG | - | chr1_1:9996980-9996999 | Msa0006980:CDS | 30.0% | |
| !! | ACTTGTGAGTTTGTTCTTTT+TGG | - | chr1_1:9997290-9997309 | Msa0006980:intron | 30.0% |
| !!! | TTGTTCTTTTTGGCTAACTT+TGG | - | chr1_1:9997300-9997319 | Msa0006980:intron | 30.0% |
| ATTCTTCCAAGAGATATGTT+TGG | - | chr1_1:9997352-9997371 | Msa0006980:intron | 30.0% | |
| ! | ATGTTTGGTTTCTCAACATA+TGG | - | chr1_1:9997367-9997386 | Msa0006980:intron | 30.0% |
| TCAACATATGGAATAGCTAT+GGG | - | chr1_1:9997379-9997398 | Msa0006980:intron | 30.0% | |
| TTAGTTTCAAGCTTCTTCTT+GGG | - | chr1_1:9997448-9997467 | Msa0006980:intron | 30.0% | |
| GTAACATACCTTAATGTTAC+CGG | + | chr1_1:9997584-9997603 | None:intergenic | 30.0% | |
| !! | TTAATATTGTAGGTGATGGA+AGG | - | chr1_1:9997687-9997706 | Msa0006980:intron | 30.0% |
| GTGAAAGAGATAACAAGAAA+TGG | - | chr1_1:9997711-9997730 | Msa0006980:intron | 30.0% | |
| !! | AATGGTGCAAAATTTTTGGA+TGG | - | chr1_1:9997729-9997748 | Msa0006980:intron | 30.0% |
| !! | ATTTTTGGATGGACAAGAAA+AGG | - | chr1_1:9997740-9997759 | Msa0006980:intron | 30.0% |
| ATGCAATAATCTTAGCAACA+GGG | - | chr1_1:9997769-9997788 | Msa0006980:intron | 30.0% | |
| AAAAAAAAGAAGCTGAACAC+AGG | + | chr1_1:9998060-9998079 | None:intergenic | 30.0% | |
| ATTCATGGACCTATCATAGT+AGG | - | chr1_1:9995974-9995993 | Msa0006980:CDS | 35.0% | |
| GTTTGAGGAAAACTCATCAT+AGG | + | chr1_1:9996154-9996173 | None:intergenic | 35.0% | |
| GGATACTTAGGAAATGTTTG+AGG | + | chr1_1:9996169-9996188 | None:intergenic | 35.0% | |
| ACATCAGTTCATTTCCTACA+TGG | - | chr1_1:9996195-9996214 | Msa0006980:intron | 35.0% | |
| CCATGAATTGTTGGAAAAAC+AGG | + | chr1_1:9996382-9996401 | None:intergenic | 35.0% | |
| !! | CCTGTTTTTCCAACAATTCA+TGG | - | chr1_1:9996379-9996398 | Msa0006980:intron | 35.0% |
| TGTTCCATACCATGAATTGT+TGG | + | chr1_1:9996391-9996410 | None:intergenic | 35.0% | |
| ! | CATGGTATGGAACATTTTCA+TGG | - | chr1_1:9996397-9996416 | Msa0006980:intron | 35.0% |
| TAATCACTTGTATGAGCAAC+AGG | + | chr1_1:9996424-9996443 | None:intergenic | 35.0% | |
| !! | TTCTGGAATGGAAGTTAGTT+TGG | - | chr1_1:9996498-9996517 | Msa0006980:intron | 35.0% |
| ! | CACATCGATTAAAGATGCAT+CGG | + | chr1_1:9996649-9996668 | None:intergenic | 35.0% |
| TTTGACAAAATTGCGGTCAT+AGG | + | chr1_1:9996751-9996770 | None:intergenic | 35.0% | |
| CCCAAAAGTGACCATTAAAA+AGG | + | chr1_1:9996852-9996871 | None:intergenic | 35.0% | |
| TGACAATTAAAAAGGAACGG+AGG | - | chr1_1:9997084-9997103 | Msa0006980:CDS | 35.0% | |
| GAGAAACCAAACATATCTCT+TGG | + | chr1_1:9997361-9997380 | None:intergenic | 35.0% | |
| CTCAACATATGGAATAGCTA+TGG | - | chr1_1:9997378-9997397 | Msa0006980:intron | 35.0% | |
| ! | GTTAGTTTCAAGCTTCTTCT+TGG | - | chr1_1:9997447-9997466 | Msa0006980:intron | 35.0% |
| ! | AGTTCTATTGGACCAGTTTT+AGG | + | chr1_1:9997502-9997521 | None:intergenic | 35.0% |
| ! | GTTGCAAGTTTGAGTTCTAT+TGG | + | chr1_1:9997514-9997533 | None:intergenic | 35.0% |
| ATAGAACTCAAACTTGCAAC+AGG | - | chr1_1:9997514-9997533 | Msa0006980:intron | 35.0% | |
| AAAACTCCTGTACTTGATGT+TGG | - | chr1_1:9997538-9997557 | Msa0006980:intron | 35.0% | |
| ATTTGACCAACATCAAGTAC+AGG | + | chr1_1:9997547-9997566 | None:intergenic | 35.0% | |
| GATGCAATAATCTTAGCAAC+AGG | - | chr1_1:9997768-9997787 | Msa0006980:intron | 35.0% | |
| ! | TTTTTAACCTTGAGCCAAGT+AGG | + | chr1_1:9997810-9997829 | None:intergenic | 35.0% |
| CTTATGACCTATCACTATCT+AGG | - | chr1_1:9997876-9997895 | Msa0006980:intron | 35.0% | |
| GCAAAGTGTGTATGGATTCA+TGG | - | chr1_1:9995959-9995978 | Msa0006980:CDS | 40.0% | |
| GCTGCTTGTTTATCAGAACA+AGG | - | chr1_1:9996022-9996041 | Msa0006980:CDS | 40.0% | |
| CTTCTCTCAAGAATGAGACT+CGG | + | chr1_1:9996052-9996071 | None:intergenic | 40.0% | |
| GTGATTGCATAGCTTCACTA+TGG | - | chr1_1:9996071-9996090 | Msa0006980:CDS | 40.0% | |
| ATCAGCATAGGATTCCATGT+AGG | + | chr1_1:9996212-9996231 | None:intergenic | 40.0% | |
| !! | AAGGTTTTGGTCATTGGTTG+TGG | - | chr1_1:9996472-9996491 | Msa0006980:intron | 40.0% |
| !! | AGGTTTTGGTCATTGGTTGT+GGG | - | chr1_1:9996473-9996492 | Msa0006980:intron | 40.0% |
| ACACAATGCTATGCCTCATT+TGG | - | chr1_1:9996531-9996550 | Msa0006980:intron | 40.0% | |
| ! | CTTCCTCCGTTCCTTTTTAA+TGG | - | chr1_1:9996838-9996857 | Msa0006980:intron | 40.0% |
| TGACCATTAAAAAGGAACGG+AGG | + | chr1_1:9996844-9996863 | None:intergenic | 40.0% | |
| TTGGGAAACACCAATCACTA+TGG | - | chr1_1:9997466-9997485 | Msa0006980:intron | 40.0% | |
| CCTCTTGATACCATAGTGAT+TGG | + | chr1_1:9997479-9997498 | None:intergenic | 40.0% | |
| CCAATCACTATGGTATCAAG+AGG | - | chr1_1:9997476-9997495 | Msa0006980:intron | 40.0% | |
| ACCTATCACTATCTAGGCTT+GGG | - | chr1_1:9997882-9997901 | Msa0006980:intron | 40.0% | |
| TGAGCAAGGATTGTATACAG+TGG | - | chr1_1:9998397-9998416 | Msa0006980:CDS | 40.0% | |
| GAGCAAGGATTGTATACAGT+GGG | - | chr1_1:9998398-9998417 | Msa0006980:CDS | 40.0% | |
| TTCACAAGAAGAGGTCTACA+TGG | - | chr1_1:9998422-9998441 | Msa0006980:CDS | 40.0% | |
| CCAGTAGCAACAATAAGCCA+AGG | + | chr1_1:9996346-9996365 | None:intergenic | 45.0% | |
| CCTTGGCTTATTGTTGCTAC+TGG | - | chr1_1:9996343-9996362 | Msa0006980:intron | 45.0% | |
| ! | GTCATTGGTTGTGGGAATTC+TGG | - | chr1_1:9996481-9996500 | Msa0006980:intron | 45.0% |
| ! | TGGTTGTGGGAATTCTGGAA+TGG | - | chr1_1:9996486-9996505 | Msa0006980:intron | 45.0% |
| GAGTTTCGTGCAACCAAATG+AGG | + | chr1_1:9996547-9996566 | None:intergenic | 45.0% | |
| GGTATCAAGAGGCCTAAAAC+TGG | - | chr1_1:9997487-9997506 | Msa0006980:intron | 45.0% | |
| ACAAGAGCAATGTGCCTACT+TGG | - | chr1_1:9997793-9997812 | Msa0006980:intron | 45.0% | |
| GACCTATCACTATCTAGGCT+TGG | - | chr1_1:9997881-9997900 | Msa0006980:intron | 45.0% | |
| TCCCAAGCCTAGATAGTGAT+AGG | + | chr1_1:9997886-9997905 | None:intergenic | 45.0% | |
| !!! | CCATGAGGAAAGGGTGTTTT+TGG | + | chr1_1:9998368-9998387 | None:intergenic | 45.0% |
| CCAAAAACACCCTTTCCTCA+TGG | - | chr1_1:9998365-9998384 | Msa0006980:CDS | 45.0% | |
| AAACACCCTTTCCTCATGGT+TGG | - | chr1_1:9998369-9998388 | Msa0006980:CDS | 45.0% | |
| CCTTTCCAACCATGAGGAAA+GGG | + | chr1_1:9998377-9998396 | None:intergenic | 45.0% | |
| ACCTTTCCAACCATGAGGAA+AGG | + | chr1_1:9998378-9998397 | None:intergenic | 45.0% | |
| ! | ACAGTGGGTTTCACAAGAAG+AGG | - | chr1_1:9998413-9998432 | Msa0006980:CDS | 45.0% |
| !!! | TTATATTAATACTTTTAATA+AGG | - | chr1_1:9997144-9997163 | Msa0006980:intron | 5.0% |
| !! | TATTTAAATATTAAAAAAAG+TGG | + | chr1_1:9997994-9998013 | None:intergenic | 5.0% |
| GGACCTATCATAGTAGGTGC+TGG | - | chr1_1:9995980-9995999 | Msa0006980:CDS | 50.0% | |
| GGACCAGCACCTACTATGAT+AGG | + | chr1_1:9995986-9996005 | None:intergenic | 50.0% | |
| !! | ATAGTAGGTGCTGGTCCTTC+AGG | - | chr1_1:9995989-9996008 | Msa0006980:CDS | 50.0% |
| GCAGCTACTGCTATACCTGA+AGG | + | chr1_1:9996007-9996026 | None:intergenic | 50.0% | |
| CAATGTGCCTACTTGGCTCA+AGG | - | chr1_1:9997800-9997819 | Msa0006980:intron | 50.0% | |
| CCCTTTCCTCATGGTTGGAA+AGG | - | chr1_1:9998374-9998393 | Msa0006980:CDS | 50.0% | |
| TGCTCACCTTTCCAACCATG+AGG | + | chr1_1:9998383-9998402 | None:intergenic | 50.0% | |
| CATGGTTGGAAAGGTGAGCA+AGG | - | chr1_1:9998383-9998402 | Msa0006980:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 9995938 | 9998517 | 9995938 | ID=Msa0006980;Name=Msa0006980 |
| chr1_1 | mRNA | 9995938 | 9998517 | 9995938 | ID=Msa0006980-mRNA-1;Parent=Msa0006980;Name=Msa0006980-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|0.75|4|0|395 |
| chr1_1 | exon | 9997888 | 9998517 | 9997888 | ID=Msa0006980-mRNA-1:exon:3630;Parent=Msa0006980-mRNA-1 |
| chr1_1 | exon | 9996861 | 9997109 | 9996861 | ID=Msa0006980-mRNA-1:exon:3629;Parent=Msa0006980-mRNA-1 |
| chr1_1 | exon | 9996634 | 9996756 | 9996634 | ID=Msa0006980-mRNA-1:exon:3628;Parent=Msa0006980-mRNA-1 |
| chr1_1 | exon | 9995938 | 9996120 | 9995938 | ID=Msa0006980-mRNA-1:exon:3627;Parent=Msa0006980-mRNA-1 |
| chr1_1 | CDS | 9997888 | 9998517 | 9997888 | ID=Msa0006980-mRNA-1:cds;Parent=Msa0006980-mRNA-1 |
| chr1_1 | CDS | 9996861 | 9997109 | 9996861 | ID=Msa0006980-mRNA-1:cds;Parent=Msa0006980-mRNA-1 |
| chr1_1 | CDS | 9996634 | 9996756 | 9996634 | ID=Msa0006980-mRNA-1:cds;Parent=Msa0006980-mRNA-1 |
| chr1_1 | CDS | 9995938 | 9996120 | 9995938 | ID=Msa0006980-mRNA-1:cds;Parent=Msa0006980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
