AlfalfaGEDB | Msa0428010

M. sativa cultivar zhongmu-4 / Msa0428010

KEGG: -
GO: GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015172 GO:0015175 GO:0015318 GO:0015399 GO:0015711 GO:0015800 GO:0015804 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039
PFAM: PF01490.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428010	XP_003602666.1	95.556	90	4	0	1	90	388	477	9.14e-51	176

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428010	sp\|Q8GUM3\|AAP5_ARATH	60.000	90	36	0	1	90	391	480	4.81e-36	129

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428010	G7JC68	95.556	90	4	0	1	90	388	477	4.36e-51	176

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0142220	Msa0428010	0.802760	4.815158e-49	-8.615850e-47
Msa0232850	Msa0428010	0.800161	1.640807e-48	-8.615850e-47
Msa0360510	Msa0428010	0.833271	5.869777e-56	-8.615850e-47
Msa0378360	Msa0428010	0.848573	5.621933e-60	-8.615850e-47
Msa0384890	Msa0428010	0.812316	4.506821e-51	-8.615850e-47
Msa0427710	Msa0428010	0.844953	5.493967e-59	-8.615850e-47
Msa0428000	Msa0428010	0.902146	1.306304e-78	-8.615850e-47
Msa0428010	Msa0436780	0.805186	1.507567e-49	-8.615850e-47
Msa0428010	Msa0452900	0.813727	2.211152e-51	-8.615850e-47
Msa0428010	Msa0453120	0.817700	2.878333e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428010	MtrunA17_Chr3g0130641	95.556	90	4	1	90	388	477	8.40e-55	176
Msa0428010	MtrunA17_Chr3g0125081	66.667	90	30	1	90	390	479	4.83e-40	137
Msa0428010	MtrunA17_Chr3g0130661	68.966	87	27	1	87	92	178	9.46e-40	129
Msa0428010	MtrunA17_Chr3g0125101	65.556	90	31	1	90	391	480	7.67e-39	134
Msa0428010	MtrunA17_Chr3g0125091	64.444	90	32	1	90	391	480	1.52e-37	130
Msa0428010	MtrunA17_Chr8g0384661	62.500	88	33	3	90	407	494	2.00e-36	127
Msa0428010	MtrunA17_Chr4g0037201	58.889	90	37	1	90	423	512	1.55e-35	125
Msa0428010	MtrunA17_Chr1g0159761	58.889	90	37	1	90	386	475	1.34e-30	112
Msa0428010	MtrunA17_Chr1g0206821	56.180	89	39	1	89	442	530	1.08e-29	109
Msa0428010	MtrunA17_Chr1g0206851	52.874	87	41	1	87	292	378	1.77e-29	107

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0428010	AT1G44100.1	60.000	90	36	1	90	391	480	4.89e-37	129
Msa0428010	AT5G09220.1	61.111	90	35	1	90	404	493	9.26e-37	129
Msa0428010	AT5G63850.1	57.778	90	38	1	90	377	466	6.12e-35	124
Msa0428010	AT1G77380.1	62.222	90	34	1	90	387	476	4.27e-33	119
Msa0428010	AT5G49630.1	56.818	88	38	1	88	393	480	7.26e-30	110
Msa0428010	AT1G58360.1	53.333	90	42	1	90	395	484	1.95e-29	109
Msa0428010	AT1G10010.1	53.409	88	41	1	88	386	473	5.33e-29	107
Msa0428010	AT1G10010.2	53.409	88	41	1	88	387	474	5.42e-29	107
Msa0428010	AT5G23810.1	55.172	58	26	1	58	386	443	8.88e-17	73.9

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Find 22 sgRNAs with CRISPR-Local

Find 23 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGATGTTCTGGGATTTCT+TGG	0.212555	3_2:+78735001	Msa0428010:CDS
ACATTGCAACAAAAGTAGTT+AGG	0.463138	3_2:-78734964	None:intergenic
ACTGGATAATAAACTGTTAA+AGG	0.224075	3_2:-78735040	None:intergenic
ATCCATTTAGAACTCCATTT+TGG	0.108522	3_2:-78735091	None:intergenic
ATGCTTTATTGTATCAGTTG+TGG	0.512651	3_2:+78735138	Msa0428010:CDS
CCCAGAACATCATTAAAGAA+AGG	0.503059	3_2:-78734992	None:intergenic
CCTTTCTTTAATGATGTTCT+GGG	0.306108	3_2:+78734992	Msa0428010:CDS
CTCAACCGCCAGTATTATAG+AGG	0.511484	3_2:+78735171	Msa0428010:CDS
CTGGGATTTCTTGGAGCAGT+GGG	0.412618	3_2:+78735010	Msa0428010:CDS
CTTTAGGTCCTCTATAATAC+TGG	0.396377	3_2:-78735179	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATTGCAACAAAAGTAGTT+AGG	-	chr3_2:78734967-78734986	None:intergenic	30.0%
TCCTTTCTTTAATGATGTTC+TGG	+	chr3_2:78734991-78735010	Msa0428010:CDS	30.0%
CCTTTCTTTAATGATGTTCT+GGG	+	chr3_2:78734992-78735011	Msa0428010:CDS	30.0%
CCCAGAACATCATTAAAGAA+AGG	-	chr3_2:78734995-78735014	None:intergenic	35.0%
TGGAGATGTATATCTTGCAA+AGG	+	chr3_2:78735062-78735081	Msa0428010:CDS	35.0%
CTTTAGGTCCTCTATAATAC+TGG	-	chr3_2:78735182-78735201	None:intergenic	35.0%
TGCAAGATATACATCTCCAC+TGG	-	chr3_2:78735061-78735080	None:intergenic	40.0%
TGCAAAGGAAGATCCCAAAA+TGG	+	chr3_2:78735077-78735096	Msa0428010:CDS	40.0%
TAGGTCCTCTATAATACTGG+CGG	-	chr3_2:78735179-78735198	None:intergenic	40.0%
CTCAACCGCCAGTATTATAG+AGG	+	chr3_2:78735171-78735190	Msa0428010:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	78734959	78735231	78734959	ID=Msa0428010;Name=Msa0428010
chr3_2	mRNA	78734959	78735231	78734959	ID=Msa0428010-mRNA-1;Parent=Msa0428010;Name=Msa0428010-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|90
chr3_2	exon	78734959	78735231	78734959	ID=Msa0428010-mRNA-1:exon:20964;Parent=Msa0428010-mRNA-1
chr3_2	CDS	78734959	78735231	78734959	ID=Msa0428010-mRNA-1:cds;Parent=Msa0428010-mRNA-1

Gene Sequence	>Msa0428010 ATGATCCTAACTACTTTTGTTGCAATGTTGATTCCTTTCTTTAATGATGTTCTGGGATTTCTTGGAGCAGTGGGATTTTGGCCTTTAACAGTTTATTATCCAGTGGAGATGTATATCTTGCAAAGGAAGATCCCAAAATGGAGTTCTAAATGGATTTTGTTGGAAATCATAAGTGTTATATGCTTTATTGTATCAGTTGTGGCTGCTCTTGGCTCAACCGCCAGTATTATAGAGGACCTAAAGCATTACAAGCCATTCAGCTCAGAGTATTGA
Protein sequence	>Msa0428010 MILTTFVAMLIPFFNDVLGFLGAVGFWPLTVYYPVEMYILQRKIPKWSSKWILLEIISVICFIVSVVAALGSTASIIEDLKHYKPFSSEY*