Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0428010 | XP_003602666.1 | 95.556 | 90 | 4 | 0 | 1 | 90 | 388 | 477 | 9.14e-51 | 176 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0428010 | sp|Q8GUM3|AAP5_ARATH | 60.000 | 90 | 36 | 0 | 1 | 90 | 391 | 480 | 4.81e-36 | 129 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0428010 | G7JC68 | 95.556 | 90 | 4 | 0 | 1 | 90 | 388 | 477 | 4.36e-51 | 176 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0142220 | Msa0428010 | 0.802760 | 4.815158e-49 | -8.615850e-47 |
Msa0232850 | Msa0428010 | 0.800161 | 1.640807e-48 | -8.615850e-47 |
Msa0378360 | Msa0428010 | 0.848573 | 5.621933e-60 | -8.615850e-47 |
Msa0384890 | Msa0428010 | 0.812316 | 4.506821e-51 | -8.615850e-47 |
Msa0427710 | Msa0428010 | 0.844953 | 5.493967e-59 | -8.615850e-47 |
Msa0428000 | Msa0428010 | 0.902146 | 1.306304e-78 | -8.615850e-47 |
Msa0428010 | Msa0436780 | 0.805186 | 1.507567e-49 | -8.615850e-47 |
Msa0428010 | Msa0452900 | 0.813727 | 2.211152e-51 | -8.615850e-47 |
Msa0428010 | Msa0453120 | 0.817700 | 2.878333e-52 | -8.615850e-47 |
Msa0428010 | Msa0479340 | 0.807721 | 4.401770e-50 | -8.615850e-47 |
Msa0428010 | Msa0518540 | 0.855983 | 4.372114e-62 | -8.615850e-47 |
Msa0428010 | Msa0729800 | 0.804314 | 2.292738e-49 | -8.615850e-47 |
Msa0428010 | Msa0743810 | 0.806151 | 9.454551e-50 | -8.615850e-47 |
Msa0428010 | Msa0783160 | 0.816654 | 4.948194e-52 | -8.615850e-47 |
Msa0428010 | Msa0808010 | 0.816181 | 6.312240e-52 | -8.615850e-47 |
Msa0428010 | Msa0808020 | 0.810587 | 1.070313e-50 | -8.615850e-47 |
Msa0428010 | Msa0858980 | 0.817917 | 2.571752e-52 | -8.615850e-47 |
Msa0428010 | Msa0981370 | 0.807877 | 4.078526e-50 | -8.615850e-47 |
Msa0428010 | Msa1044840 | 0.801339 | 9.434312e-49 | -8.615850e-47 |
Msa0428010 | Msa1092990 | 0.815190 | 1.049744e-51 | -8.615850e-47 |
Msa0428010 | Msa1100980 | 0.825531 | 4.454667e-54 | -8.615850e-47 |
Msa0428010 | Msa1121200 | 0.828876 | 7.045134e-55 | -8.615850e-47 |
Msa0428010 | Msa1135740 | 0.813932 | 1.993050e-51 | -8.615850e-47 |
Msa0428010 | Msa1187950 | 0.815866 | 7.422600e-52 | -8.615850e-47 |
Msa0428010 | Msa1270230 | 0.805648 | 1.206064e-49 | -8.615850e-47 |
Msa0428010 | Msa1283330 | 0.800839 | 1.194019e-48 | -8.615850e-47 |
Msa0428010 | Msa1285930 | 0.811448 | 6.965562e-51 | -8.615850e-47 |
Msa0428010 | Msa1382690 | 0.834807 | 2.420902e-56 | -8.615850e-47 |
Msa0428010 | Msa1382700 | 0.868964 | 4.413698e-66 | -8.615850e-47 |
Msa0428010 | Msa1433120 | 0.819110 | 1.379241e-52 | -8.615850e-47 |
Msa0360510 | Msa0428010 | 0.833271 | 5.869777e-56 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0428010 | MtrunA17_Chr3g0130641 | 95.556 | 90 | 4 | 0 | 1 | 90 | 388 | 477 | 8.40e-55 | 176 |
Msa0428010 | MtrunA17_Chr3g0125081 | 66.667 | 90 | 30 | 0 | 1 | 90 | 390 | 479 | 4.83e-40 | 137 |
Msa0428010 | MtrunA17_Chr3g0130661 | 68.966 | 87 | 27 | 0 | 1 | 87 | 92 | 178 | 9.46e-40 | 129 |
Msa0428010 | MtrunA17_Chr3g0125101 | 65.556 | 90 | 31 | 0 | 1 | 90 | 391 | 480 | 7.67e-39 | 134 |
Msa0428010 | MtrunA17_Chr3g0125091 | 64.444 | 90 | 32 | 0 | 1 | 90 | 391 | 480 | 1.52e-37 | 130 |
Msa0428010 | MtrunA17_Chr8g0384661 | 62.500 | 88 | 33 | 0 | 3 | 90 | 407 | 494 | 2.00e-36 | 127 |
Msa0428010 | MtrunA17_Chr4g0037201 | 58.889 | 90 | 37 | 0 | 1 | 90 | 423 | 512 | 1.55e-35 | 125 |
Msa0428010 | MtrunA17_Chr1g0159761 | 58.889 | 90 | 37 | 0 | 1 | 90 | 386 | 475 | 1.34e-30 | 112 |
Msa0428010 | MtrunA17_Chr1g0206821 | 56.180 | 89 | 39 | 0 | 1 | 89 | 442 | 530 | 1.08e-29 | 109 |
Msa0428010 | MtrunA17_Chr1g0206851 | 52.874 | 87 | 41 | 0 | 1 | 87 | 292 | 378 | 1.77e-29 | 107 |
Msa0428010 | MtrunA17_Chr3g0130651 | 73.563 | 87 | 23 | 0 | 1 | 87 | 379 | 465 | 1.89e-28 | 105 |
Msa0428010 | MtrunA17_Chr3g0140761 | 47.191 | 89 | 47 | 0 | 1 | 89 | 393 | 481 | 9.84e-27 | 101 |
Msa0428010 | MtrunA17_Chr1g0206871 | 49.438 | 89 | 45 | 0 | 1 | 89 | 382 | 470 | 1.74e-26 | 100 |
Msa0428010 | MtrunA17_Chr1g0146491 | 48.315 | 89 | 46 | 0 | 1 | 89 | 383 | 471 | 7.69e-26 | 99.0 |
Msa0428010 | MtrunA17_Chr1g0206831 | 54.321 | 81 | 37 | 0 | 1 | 81 | 255 | 335 | 9.49e-26 | 97.4 |
Msa0428010 | MtrunA17_Chr5g0447221 | 54.430 | 79 | 36 | 0 | 1 | 79 | 385 | 463 | 2.53e-25 | 97.4 |
Msa0428010 | MtrunA17_Chr3g0140531 | 47.674 | 86 | 45 | 0 | 1 | 86 | 382 | 467 | 1.30e-24 | 95.5 |
Msa0428010 | MtrunA17_Chr3g0103251 | 51.899 | 79 | 38 | 0 | 1 | 79 | 292 | 370 | 6.39e-24 | 92.8 |
Msa0428010 | MtrunA17_Chr3g0103231 | 51.899 | 79 | 38 | 0 | 1 | 79 | 379 | 457 | 7.79e-24 | 93.2 |
Msa0428010 | MtrunA17_Chr3g0140541 | 47.500 | 80 | 42 | 0 | 7 | 86 | 387 | 466 | 6.51e-23 | 90.9 |
Msa0428010 | MtrunA17_Chr3g0103211 | 48.101 | 79 | 41 | 0 | 1 | 79 | 379 | 457 | 1.31e-22 | 89.7 |
Msa0428010 | MtrunA17_Chr3g0103221 | 49.367 | 79 | 40 | 0 | 1 | 79 | 386 | 464 | 1.38e-22 | 89.7 |
Msa0428010 | MtrunA17_Chr1g0146391 | 45.977 | 87 | 47 | 0 | 1 | 87 | 368 | 454 | 1.94e-21 | 86.7 |
Msa0428010 | MtrunA17_Chr1g0146331 | 42.529 | 87 | 50 | 0 | 1 | 87 | 377 | 463 | 3.32e-21 | 85.9 |
Msa0428010 | MtrunA17_Chr2g0293331 | 41.379 | 87 | 51 | 0 | 1 | 87 | 368 | 454 | 7.28e-20 | 82.0 |
Msa0428010 | MtrunA17_Chr1g0146411 | 39.286 | 84 | 51 | 0 | 3 | 86 | 386 | 469 | 2.96e-19 | 80.5 |
Msa0428010 | MtrunA17_Chr3g0103271 | 46.667 | 75 | 40 | 0 | 4 | 78 | 387 | 461 | 1.01e-18 | 79.0 |
Msa0428010 | MtrunA17_Chr5g0447231 | 34.211 | 76 | 50 | 0 | 4 | 79 | 385 | 460 | 1.55e-15 | 70.1 |
Msa0428010 | MtrunA17_Chr1g0184721 | 34.444 | 90 | 55 | 1 | 1 | 86 | 348 | 437 | 8.59e-12 | 59.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0428010 | AT1G44100.1 | 60.000 | 90 | 36 | 0 | 1 | 90 | 391 | 480 | 4.89e-37 | 129 |
Msa0428010 | AT5G09220.1 | 61.111 | 90 | 35 | 0 | 1 | 90 | 404 | 493 | 9.26e-37 | 129 |
Msa0428010 | AT5G63850.1 | 57.778 | 90 | 38 | 0 | 1 | 90 | 377 | 466 | 6.12e-35 | 124 |
Msa0428010 | AT1G77380.1 | 62.222 | 90 | 34 | 0 | 1 | 90 | 387 | 476 | 4.27e-33 | 119 |
Msa0428010 | AT5G49630.1 | 56.818 | 88 | 38 | 0 | 1 | 88 | 393 | 480 | 7.26e-30 | 110 |
Msa0428010 | AT1G58360.1 | 53.333 | 90 | 42 | 0 | 1 | 90 | 395 | 484 | 1.95e-29 | 109 |
Msa0428010 | AT1G10010.1 | 53.409 | 88 | 41 | 0 | 1 | 88 | 386 | 473 | 5.33e-29 | 107 |
Msa0428010 | AT1G10010.2 | 53.409 | 88 | 41 | 0 | 1 | 88 | 387 | 474 | 5.42e-29 | 107 |
Msa0428010 | AT5G23810.1 | 55.172 | 58 | 26 | 0 | 1 | 58 | 386 | 443 | 8.88e-17 | 73.9 |
Find 22 sgRNAs with CRISPR-Local
Find 23 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCCATTTAGAACTCCATTT+TGG | 0.108522 | 3_2:-78735091 | None:intergenic |
TCCTTTCTTTAATGATGTTC+TGG | 0.137749 | 3_2:+78734991 | Msa0428010:CDS |
TTCTTGGAGCAGTGGGATTT+TGG | 0.180772 | 3_2:+78735017 | Msa0428010:CDS |
AATGATGTTCTGGGATTTCT+TGG | 0.212555 | 3_2:+78735001 | Msa0428010:CDS |
ACTGGATAATAAACTGTTAA+AGG | 0.224075 | 3_2:-78735040 | None:intergenic |
CCTTTCTTTAATGATGTTCT+GGG | 0.306108 | 3_2:+78734992 | Msa0428010:CDS |
TCCCAAAATGGAGTTCTAAA+TGG | 0.320619 | 3_2:+78735089 | Msa0428010:CDS |
TGAATGGCTTGTAATGCTTT+AGG | 0.330057 | 3_2:-78735195 | None:intergenic |
GTATCAGTTGTGGCTGCTCT+TGG | 0.389248 | 3_2:+78735148 | Msa0428010:CDS |
CTTTAGGTCCTCTATAATAC+TGG | 0.396377 | 3_2:-78735179 | None:intergenic |
CTGGGATTTCTTGGAGCAGT+GGG | 0.412618 | 3_2:+78735010 | Msa0428010:CDS |
TGCAAAGGAAGATCCCAAAA+TGG | 0.417168 | 3_2:+78735077 | Msa0428010:CDS |
ACATTGCAACAAAAGTAGTT+AGG | 0.463138 | 3_2:-78734964 | None:intergenic |
CCCAGAACATCATTAAAGAA+AGG | 0.503059 | 3_2:-78734992 | None:intergenic |
CTCAACCGCCAGTATTATAG+AGG | 0.511484 | 3_2:+78735171 | Msa0428010:CDS |
ATGCTTTATTGTATCAGTTG+TGG | 0.512651 | 3_2:+78735138 | Msa0428010:CDS |
GCTCAATACTCTGAGCTGAA+TGG | 0.555896 | 3_2:-78735211 | None:intergenic |
TCTGGGATTTCTTGGAGCAG+TGG | 0.566045 | 3_2:+78735009 | Msa0428010:CDS |
TTTAACAGTTTATTATCCAG+TGG | 0.568524 | 3_2:+78735042 | Msa0428010:CDS |
TGCAAGATATACATCTCCAC+TGG | 0.575990 | 3_2:-78735058 | None:intergenic |
TGGAGATGTATATCTTGCAA+AGG | 0.629124 | 3_2:+78735062 | Msa0428010:CDS |
TAGGTCCTCTATAATACTGG+CGG | 0.635831 | 3_2:-78735176 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | ACTGGATAATAAACTGTTAA+AGG | - | chr3_2:78735043-78735062 | None:intergenic | 25.0% |
! | TTTAACAGTTTATTATCCAG+TGG | + | chr3_2:78735042-78735061 | Msa0428010:CDS | 25.0% |
ACATTGCAACAAAAGTAGTT+AGG | - | chr3_2:78734967-78734986 | None:intergenic | 30.0% | |
TCCTTTCTTTAATGATGTTC+TGG | + | chr3_2:78734991-78735010 | Msa0428010:CDS | 30.0% | |
CCTTTCTTTAATGATGTTCT+GGG | + | chr3_2:78734992-78735011 | Msa0428010:CDS | 30.0% | |
!! | TCCATTTAGAACTCCATTTT+GGG | - | chr3_2:78735093-78735112 | None:intergenic | 30.0% |
!! | ATCCATTTAGAACTCCATTT+TGG | - | chr3_2:78735094-78735113 | None:intergenic | 30.0% |
!!! | GAGTTCTAAATGGATTTTGT+TGG | + | chr3_2:78735099-78735118 | Msa0428010:CDS | 30.0% |
! | ATGCTTTATTGTATCAGTTG+TGG | + | chr3_2:78735138-78735157 | Msa0428010:CDS | 30.0% |
CCCAGAACATCATTAAAGAA+AGG | - | chr3_2:78734995-78735014 | None:intergenic | 35.0% | |
!! | AATGATGTTCTGGGATTTCT+TGG | + | chr3_2:78735001-78735020 | Msa0428010:CDS | 35.0% |
TGGAGATGTATATCTTGCAA+AGG | + | chr3_2:78735062-78735081 | Msa0428010:CDS | 35.0% | |
!! | TCCCAAAATGGAGTTCTAAA+TGG | + | chr3_2:78735089-78735108 | Msa0428010:CDS | 35.0% |
CTTTAGGTCCTCTATAATAC+TGG | - | chr3_2:78735182-78735201 | None:intergenic | 35.0% | |
! | TGAATGGCTTGTAATGCTTT+AGG | - | chr3_2:78735198-78735217 | None:intergenic | 35.0% |
TGCAAGATATACATCTCCAC+TGG | - | chr3_2:78735061-78735080 | None:intergenic | 40.0% | |
TGCAAAGGAAGATCCCAAAA+TGG | + | chr3_2:78735077-78735096 | Msa0428010:CDS | 40.0% | |
TAGGTCCTCTATAATACTGG+CGG | - | chr3_2:78735179-78735198 | None:intergenic | 40.0% | |
! | TTCTTGGAGCAGTGGGATTT+TGG | + | chr3_2:78735017-78735036 | Msa0428010:CDS | 45.0% |
CTCAACCGCCAGTATTATAG+AGG | + | chr3_2:78735171-78735190 | Msa0428010:CDS | 45.0% | |
! | TCTGGGATTTCTTGGAGCAG+TGG | + | chr3_2:78735009-78735028 | Msa0428010:CDS | 50.0% |
CTGGGATTTCTTGGAGCAGT+GGG | + | chr3_2:78735010-78735029 | Msa0428010:CDS | 50.0% | |
GTATCAGTTGTGGCTGCTCT+TGG | + | chr3_2:78735148-78735167 | Msa0428010:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 78734959 | 78735231 | 78734959 | ID=Msa0428010;Name=Msa0428010 |
chr3_2 | mRNA | 78734959 | 78735231 | 78734959 | ID=Msa0428010-mRNA-1;Parent=Msa0428010;Name=Msa0428010-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|-1|0|1|-1|1|1|0|90 |
chr3_2 | exon | 78734959 | 78735231 | 78734959 | ID=Msa0428010-mRNA-1:exon:20964;Parent=Msa0428010-mRNA-1 |
chr3_2 | CDS | 78734959 | 78735231 | 78734959 | ID=Msa0428010-mRNA-1:cds;Parent=Msa0428010-mRNA-1 |
Gene Sequence |
Protein sequence |