Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427710 | XP_003602666.1 | 95.597 | 477 | 21 | 0 | 1 | 477 | 1 | 477 | 0.0 | 947 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427710 | sp|Q38967|AAP2_ARATH | 64.819 | 469 | 161 | 2 | 13 | 477 | 25 | 493 | 0.0 | 656 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427710 | G7JC68 | 95.597 | 477 | 21 | 0 | 1 | 477 | 1 | 477 | 0.0 | 947 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0142220 | Msa0427710 | 0.830551 | 2.756103e-55 | -8.615850e-47 |
| Msa0227480 | Msa0427710 | 0.827920 | 1.198294e-54 | -8.615850e-47 |
| Msa0378360 | Msa0427710 | 0.990878 | 8.977505e-185 | -8.615850e-47 |
| Msa0384890 | Msa0427710 | 0.817881 | 2.620593e-52 | -8.615850e-47 |
| Msa0414420 | Msa0427710 | 0.805846 | 1.095820e-49 | -8.615850e-47 |
| Msa0427710 | Msa0428000 | 0.893002 | 9.423196e-75 | -8.615850e-47 |
| Msa0427710 | Msa0428010 | 0.844953 | 5.493967e-59 | -8.615850e-47 |
| Msa0427710 | Msa0435230 | 0.807107 | 5.941916e-50 | -8.615850e-47 |
| Msa0427710 | Msa0452900 | 0.807727 | 4.389243e-50 | -8.615850e-47 |
| Msa0427710 | Msa0518540 | 0.981673 | 3.642854e-153 | -8.615850e-47 |
| Msa0427710 | Msa0600700 | 0.800014 | 1.757964e-48 | -8.615850e-47 |
| Msa0427710 | Msa0639610 | 0.808121 | 3.617799e-50 | -8.615850e-47 |
| Msa0427710 | Msa0729800 | 0.801005 | 1.104138e-48 | -8.615850e-47 |
| Msa0427710 | Msa0743810 | 0.806689 | 7.282232e-50 | -8.615850e-47 |
| Msa0427710 | Msa0766630 | 0.807198 | 5.683138e-50 | -8.615850e-47 |
| Msa0427710 | Msa0767720 | 0.820660 | 6.100653e-53 | -8.615850e-47 |
| Msa0427710 | Msa0783160 | 0.822318 | 2.526042e-53 | -8.615850e-47 |
| Msa0427710 | Msa0808010 | 0.809010 | 2.336896e-50 | -8.615850e-47 |
| Msa0427710 | Msa0808020 | 0.802275 | 6.061955e-49 | -8.615850e-47 |
| Msa0427710 | Msa0811080 | 0.831610 | 1.513769e-55 | -8.615850e-47 |
| Msa0427710 | Msa0858980 | 0.804264 | 2.348555e-49 | -8.615850e-47 |
| Msa0427710 | Msa0885290 | 0.809652 | 1.702579e-50 | -8.615850e-47 |
| Msa0427710 | Msa0907260 | 0.807565 | 4.750581e-50 | -8.615850e-47 |
| Msa0427710 | Msa0956270 | 0.813708 | 2.231934e-51 | -8.615850e-47 |
| Msa0427710 | Msa1016280 | 0.807812 | 4.209772e-50 | -8.615850e-47 |
| Msa0427710 | Msa1100980 | 0.824988 | 5.988600e-54 | -8.615850e-47 |
| Msa0427710 | Msa1135740 | 0.809130 | 2.202847e-50 | -8.615850e-47 |
| Msa0427710 | Msa1187940 | 0.809143 | 2.188755e-50 | -8.615850e-47 |
| Msa0427710 | Msa1187950 | 0.830258 | 3.249989e-55 | -8.615850e-47 |
| Msa0427710 | Msa1192640 | 0.806535 | 7.847441e-50 | -8.615850e-47 |
| Msa0427710 | Msa1251910 | 0.801761 | 7.729638e-49 | -8.615850e-47 |
| Msa0427710 | Msa1253000 | 0.804653 | 1.947837e-49 | -8.615850e-47 |
| Msa0427710 | Msa1270230 | 0.805544 | 1.268174e-49 | -8.615850e-47 |
| Msa0427710 | Msa1283330 | 0.816368 | 5.733984e-52 | -8.615850e-47 |
| Msa0427710 | Msa1285930 | 0.827689 | 1.361744e-54 | -8.615850e-47 |
| Msa0427710 | Msa1382690 | 0.938690 | 4.434340e-99 | -8.615850e-47 |
| Msa0427710 | Msa1382700 | 0.878286 | 3.176539e-69 | -8.615850e-47 |
| Msa0270520 | Msa0427710 | 0.810658 | 1.032942e-50 | -8.615850e-47 |
| Msa0360510 | Msa0427710 | 0.819297 | 1.250302e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427710 | MtrunA17_Chr3g0130641 | 95.597 | 477 | 21 | 0 | 1 | 477 | 1 | 477 | 0.0 | 947 |
| Msa0427710 | MtrunA17_Chr3g0130651 | 71.767 | 464 | 129 | 1 | 11 | 474 | 4 | 465 | 0.0 | 674 |
| Msa0427710 | MtrunA17_Chr3g0125081 | 63.410 | 481 | 170 | 3 | 1 | 477 | 1 | 479 | 0.0 | 652 |
| Msa0427710 | MtrunA17_Chr8g0384661 | 67.627 | 451 | 146 | 0 | 27 | 477 | 44 | 494 | 0.0 | 652 |
| Msa0427710 | MtrunA17_Chr3g0125091 | 63.693 | 482 | 168 | 4 | 1 | 477 | 1 | 480 | 0.0 | 643 |
| Msa0427710 | MtrunA17_Chr3g0125101 | 62.241 | 482 | 175 | 4 | 1 | 477 | 1 | 480 | 0.0 | 632 |
| Msa0427710 | MtrunA17_Chr4g0037201 | 59.794 | 485 | 183 | 3 | 5 | 477 | 28 | 512 | 0.0 | 619 |
| Msa0427710 | MtrunA17_Chr1g0159761 | 63.113 | 469 | 165 | 3 | 13 | 477 | 11 | 475 | 0.0 | 607 |
| Msa0427710 | MtrunA17_Chr1g0146491 | 52.790 | 466 | 213 | 4 | 18 | 476 | 6 | 471 | 0.0 | 533 |
| Msa0427710 | MtrunA17_Chr3g0140761 | 51.452 | 482 | 227 | 5 | 1 | 476 | 1 | 481 | 0.0 | 530 |
| Msa0427710 | MtrunA17_Chr1g0206821 | 47.510 | 522 | 209 | 5 | 20 | 476 | 9 | 530 | 5.42e-170 | 489 |
| Msa0427710 | MtrunA17_Chr1g0206871 | 50.109 | 457 | 214 | 4 | 33 | 476 | 15 | 470 | 1.88e-168 | 483 |
| Msa0427710 | MtrunA17_Chr1g0146411 | 47.589 | 477 | 240 | 4 | 1 | 474 | 1 | 470 | 2.17e-164 | 473 |
| Msa0427710 | MtrunA17_Chr3g0103231 | 49.324 | 444 | 220 | 2 | 26 | 466 | 16 | 457 | 3.04e-164 | 472 |
| Msa0427710 | MtrunA17_Chr3g0103211 | 49.550 | 444 | 219 | 2 | 26 | 466 | 16 | 457 | 1.35e-160 | 462 |
| Msa0427710 | MtrunA17_Chr3g0140531 | 47.598 | 458 | 227 | 5 | 24 | 473 | 15 | 467 | 7.00e-156 | 451 |
| Msa0427710 | MtrunA17_Chr3g0103221 | 47.500 | 440 | 226 | 2 | 30 | 466 | 27 | 464 | 8.92e-155 | 448 |
| Msa0427710 | MtrunA17_Chr5g0447221 | 45.842 | 469 | 244 | 5 | 2 | 466 | 1 | 463 | 2.28e-153 | 444 |
| Msa0427710 | MtrunA17_Chr3g0103271 | 48.043 | 460 | 233 | 3 | 10 | 465 | 4 | 461 | 3.82e-149 | 433 |
| Msa0427710 | MtrunA17_Chr3g0140541 | 48.690 | 458 | 228 | 4 | 18 | 473 | 14 | 466 | 2.38e-148 | 432 |
| Msa0427710 | MtrunA17_Chr1g0146331 | 44.592 | 453 | 243 | 4 | 27 | 474 | 14 | 463 | 2.44e-147 | 429 |
| Msa0427710 | MtrunA17_Chr1g0146391 | 46.374 | 455 | 231 | 5 | 27 | 474 | 6 | 454 | 2.82e-147 | 428 |
| Msa0427710 | MtrunA17_Chr2g0293331 | 45.197 | 458 | 243 | 5 | 21 | 474 | 1 | 454 | 4.19e-146 | 425 |
| Msa0427710 | MtrunA17_Chr5g0447231 | 43.836 | 438 | 240 | 4 | 33 | 466 | 25 | 460 | 2.32e-127 | 378 |
| Msa0427710 | MtrunA17_Chr1g0206851 | 48.634 | 366 | 177 | 4 | 114 | 474 | 19 | 378 | 1.26e-126 | 373 |
| Msa0427710 | MtrunA17_Chr5g0402151 | 60.339 | 295 | 84 | 3 | 36 | 330 | 3 | 264 | 1.60e-115 | 341 |
| Msa0427710 | MtrunA17_Chr1g0206831 | 49.107 | 336 | 160 | 3 | 138 | 468 | 6 | 335 | 4.04e-112 | 334 |
| Msa0427710 | MtrunA17_Chr3g0103251 | 45.739 | 352 | 157 | 3 | 147 | 466 | 21 | 370 | 2.87e-109 | 328 |
| Msa0427710 | MtrunA17_Chr3g0130671 | 64.935 | 231 | 81 | 0 | 16 | 246 | 22 | 252 | 8.92e-108 | 321 |
| Msa0427710 | MtrunA17_Chr3g0130661 | 66.854 | 178 | 59 | 0 | 297 | 474 | 1 | 178 | 1.80e-83 | 255 |
| Msa0427710 | MtrunA17_Chr6g0458931 | 29.801 | 453 | 268 | 10 | 33 | 474 | 42 | 455 | 5.36e-49 | 174 |
| Msa0427710 | MtrunA17_Chr2g0331721 | 29.464 | 448 | 263 | 11 | 4 | 438 | 18 | 425 | 5.80e-48 | 171 |
| Msa0427710 | MtrunA17_Chr5g0422741 | 32.334 | 467 | 254 | 16 | 20 | 470 | 15 | 435 | 8.25e-47 | 167 |
| Msa0427710 | MtrunA17_Chr8g0376991 | 28.728 | 456 | 282 | 12 | 28 | 474 | 15 | 436 | 2.05e-45 | 164 |
| Msa0427710 | MtrunA17_Chr1g0184721 | 27.313 | 454 | 291 | 13 | 27 | 473 | 16 | 437 | 1.15e-44 | 162 |
| Msa0427710 | MtrunA17_Chr4g0057851 | 28.728 | 456 | 261 | 14 | 34 | 471 | 11 | 420 | 1.73e-43 | 158 |
| Msa0427710 | MtrunA17_Chr1g0198531 | 30.238 | 463 | 286 | 11 | 13 | 470 | 3 | 433 | 8.83e-43 | 157 |
| Msa0427710 | MtrunA17_Chr6g0459031 | 30.217 | 460 | 279 | 12 | 24 | 474 | 2 | 428 | 5.10e-40 | 149 |
| Msa0427710 | MtrunA17_Chr7g0230011 | 28.664 | 464 | 294 | 10 | 17 | 474 | 11 | 443 | 9.95e-40 | 149 |
| Msa0427710 | MtrunA17_Chr6g0458921 | 29.268 | 451 | 272 | 10 | 34 | 474 | 15 | 428 | 1.18e-39 | 148 |
| Msa0427710 | MtrunA17_Chr1g0198541 | 28.665 | 457 | 268 | 10 | 29 | 470 | 20 | 433 | 5.13e-39 | 146 |
| Msa0427710 | MtrunA17_Chr4g0027241 | 27.004 | 474 | 284 | 14 | 27 | 475 | 25 | 461 | 1.81e-37 | 142 |
| Msa0427710 | MtrunA17_Chr3g0103261 | 49.600 | 125 | 63 | 0 | 26 | 150 | 16 | 140 | 4.50e-37 | 134 |
| Msa0427710 | MtrunA17_Chr3g0077651 | 29.754 | 447 | 278 | 10 | 34 | 474 | 53 | 469 | 1.53e-36 | 140 |
| Msa0427710 | MtrunA17_Chr6g0459021 | 27.615 | 478 | 304 | 13 | 5 | 474 | 4 | 447 | 4.69e-36 | 138 |
| Msa0427710 | MtrunA17_Chr1g0206841 | 62.105 | 95 | 36 | 0 | 20 | 114 | 8 | 102 | 9.36e-36 | 128 |
| Msa0427710 | MtrunA17_Chr2g0328081 | 28.696 | 460 | 286 | 10 | 24 | 474 | 2 | 428 | 1.87e-35 | 136 |
| Msa0427710 | MtrunA17_Chr3g0122921 | 26.471 | 476 | 293 | 14 | 4 | 474 | 5 | 428 | 3.34e-35 | 135 |
| Msa0427710 | MtrunA17_Chr6g0459011 | 29.343 | 426 | 261 | 11 | 49 | 468 | 1 | 392 | 1.64e-34 | 133 |
| Msa0427710 | MtrunA17_Chr8g0387941 | 26.501 | 483 | 304 | 17 | 7 | 476 | 6 | 450 | 6.12e-34 | 132 |
| Msa0427710 | MtrunA17_Chr1g0206861 | 52.500 | 120 | 56 | 1 | 20 | 138 | 8 | 127 | 1.19e-33 | 124 |
| Msa0427710 | MtrunA17_Chr6g0459001 | 27.383 | 493 | 295 | 12 | 27 | 474 | 2 | 476 | 1.04e-32 | 129 |
| Msa0427710 | MtrunA17_Chr1g0198081 | 26.966 | 445 | 280 | 16 | 44 | 476 | 70 | 481 | 1.49e-32 | 129 |
| Msa0427710 | MtrunA17_Chr1g0146351 | 54.369 | 103 | 46 | 1 | 43 | 145 | 13 | 114 | 1.95e-30 | 114 |
| Msa0427710 | MtrunA17_Chr4g0038711 | 25.104 | 482 | 316 | 16 | 11 | 472 | 45 | 501 | 2.27e-29 | 120 |
| Msa0427710 | MtrunA17_Chr3g0143701 | 25.216 | 464 | 282 | 14 | 27 | 464 | 75 | 499 | 1.54e-28 | 118 |
| Msa0427710 | MtrunA17_Chr5g0406351 | 23.810 | 462 | 306 | 12 | 19 | 465 | 93 | 523 | 2.69e-23 | 102 |
| Msa0427710 | MtrunA17_Chr5g0436281 | 25.962 | 416 | 267 | 14 | 64 | 475 | 4 | 382 | 6.40e-23 | 100 |
| Msa0427710 | MtrunA17_Chr5g0406331 | 23.341 | 437 | 286 | 12 | 20 | 440 | 73 | 476 | 7.23e-21 | 95.5 |
| Msa0427710 | MtrunA17_Chr2g0281341 | 24.845 | 483 | 290 | 18 | 19 | 472 | 81 | 519 | 4.24e-18 | 87.0 |
| Msa0427710 | MtrunA17_Chr4g0058161 | 22.353 | 425 | 271 | 12 | 64 | 475 | 71 | 449 | 6.89e-16 | 79.7 |
| Msa0427710 | MtrunA17_Chr1g0159751 | 42.683 | 82 | 40 | 1 | 276 | 357 | 1 | 75 | 2.46e-15 | 70.9 |
| Msa0427710 | MtrunA17_Chr3g0112971 | 24.059 | 478 | 290 | 18 | 22 | 475 | 7 | 435 | 1.02e-14 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427710 | AT5G09220.1 | 64.819 | 469 | 161 | 2 | 13 | 477 | 25 | 493 | 0.0 | 656 |
| Msa0427710 | AT1G77380.1 | 65.517 | 464 | 157 | 1 | 17 | 477 | 13 | 476 | 0.0 | 649 |
| Msa0427710 | AT5G63850.1 | 64.912 | 456 | 156 | 2 | 26 | 477 | 11 | 466 | 0.0 | 642 |
| Msa0427710 | AT1G44100.1 | 59.158 | 475 | 184 | 4 | 12 | 477 | 7 | 480 | 0.0 | 610 |
| Msa0427710 | AT5G49630.1 | 56.798 | 456 | 191 | 4 | 26 | 475 | 25 | 480 | 0.0 | 528 |
| Msa0427710 | AT1G10010.1 | 53.642 | 453 | 206 | 2 | 27 | 475 | 21 | 473 | 0.0 | 526 |
| Msa0427710 | AT1G10010.2 | 53.642 | 453 | 206 | 2 | 27 | 475 | 22 | 474 | 0.0 | 526 |
| Msa0427710 | AT1G58360.1 | 53.145 | 461 | 211 | 3 | 22 | 477 | 24 | 484 | 0.0 | 524 |
| Msa0427710 | AT5G23810.1 | 47.748 | 444 | 216 | 6 | 7 | 442 | 5 | 440 | 8.23e-137 | 402 |
| Msa0427710 | AT5G23810.2 | 48.538 | 342 | 165 | 5 | 7 | 345 | 5 | 338 | 4.37e-101 | 307 |
| Msa0427710 | AT5G23810.4 | 46.586 | 249 | 124 | 4 | 18 | 263 | 14 | 256 | 1.54e-67 | 218 |
| Msa0427710 | AT5G23810.5 | 45.972 | 211 | 105 | 4 | 7 | 214 | 5 | 209 | 1.47e-53 | 180 |
| Msa0427710 | AT5G23810.3 | 45.972 | 211 | 105 | 4 | 7 | 214 | 5 | 209 | 1.47e-53 | 180 |
| Msa0427710 | AT1G48640.1 | 29.325 | 474 | 294 | 12 | 7 | 474 | 15 | 453 | 2.74e-47 | 170 |
| Msa0427710 | AT5G40780.1 | 29.663 | 445 | 277 | 10 | 34 | 474 | 34 | 446 | 2.60e-46 | 167 |
| Msa0427710 | AT1G67640.1 | 29.736 | 454 | 280 | 11 | 28 | 474 | 20 | 441 | 1.33e-42 | 157 |
| Msa0427710 | AT5G40780.3 | 29.535 | 430 | 267 | 10 | 49 | 474 | 1 | 398 | 1.95e-42 | 155 |
| Msa0427710 | AT5G40780.2 | 29.535 | 430 | 267 | 10 | 49 | 474 | 1 | 398 | 1.95e-42 | 155 |
| Msa0427710 | AT1G61270.1 | 27.193 | 456 | 293 | 12 | 22 | 469 | 19 | 443 | 7.11e-41 | 152 |
| Msa0427710 | AT1G24400.1 | 28.510 | 463 | 274 | 15 | 28 | 474 | 20 | 441 | 9.89e-41 | 152 |
| Msa0427710 | AT3G01760.1 | 25.214 | 468 | 306 | 11 | 16 | 468 | 3 | 441 | 8.92e-40 | 149 |
| Msa0427710 | AT1G25530.1 | 28.477 | 453 | 270 | 11 | 32 | 471 | 26 | 437 | 6.93e-37 | 141 |
| Msa0427710 | AT1G71680.1 | 27.423 | 485 | 291 | 14 | 7 | 474 | 8 | 448 | 9.68e-35 | 135 |
| Msa0427710 | AT1G08230.2 | 29.231 | 455 | 279 | 14 | 33 | 475 | 27 | 450 | 1.63e-32 | 129 |
| Msa0427710 | AT1G71680.2 | 28.532 | 361 | 211 | 12 | 7 | 350 | 8 | 338 | 3.04e-30 | 121 |
| Msa0427710 | AT5G41800.1 | 25.219 | 456 | 297 | 12 | 33 | 476 | 26 | 449 | 4.72e-26 | 110 |
| Msa0427710 | AT1G08230.4 | 30.745 | 322 | 193 | 9 | 163 | 475 | 31 | 331 | 2.63e-24 | 103 |
| Msa0427710 | AT1G08230.6 | 30.745 | 322 | 193 | 9 | 163 | 475 | 31 | 331 | 2.63e-24 | 103 |
| Msa0427710 | AT1G08230.5 | 30.745 | 322 | 193 | 9 | 163 | 475 | 31 | 331 | 2.63e-24 | 103 |
| Msa0427710 | AT1G08230.3 | 30.745 | 322 | 193 | 9 | 163 | 475 | 50 | 350 | 3.18e-24 | 103 |
| Msa0427710 | AT2G39890.2 | 24.519 | 416 | 273 | 14 | 64 | 475 | 63 | 441 | 2.44e-21 | 96.7 |
| Msa0427710 | AT2G39890.1 | 24.519 | 416 | 273 | 14 | 64 | 475 | 63 | 441 | 2.44e-21 | 96.7 |
| Msa0427710 | AT2G39890.3 | 24.519 | 416 | 273 | 14 | 64 | 475 | 4 | 382 | 3.17e-21 | 95.9 |
| Msa0427710 | AT2G36590.1 | 24.632 | 475 | 309 | 17 | 9 | 475 | 2 | 435 | 5.83e-21 | 95.5 |
| Msa0427710 | AT3G55740.1 | 24.940 | 417 | 270 | 13 | 64 | 475 | 60 | 438 | 1.03e-20 | 94.7 |
| Msa0427710 | AT3G55740.2 | 25.120 | 418 | 268 | 14 | 64 | 475 | 4 | 382 | 1.27e-20 | 94.0 |
| Msa0427710 | AT3G55740.3 | 25.120 | 418 | 268 | 14 | 64 | 475 | 4 | 382 | 1.27e-20 | 94.0 |
| Msa0427710 | AT1G47670.1 | 24.895 | 474 | 301 | 15 | 19 | 472 | 79 | 517 | 2.93e-18 | 87.8 |
| Msa0427710 | AT4G35180.1 | 23.529 | 459 | 292 | 13 | 34 | 473 | 58 | 476 | 2.59e-16 | 81.6 |
| Msa0427710 | AT4G35180.2 | 25.271 | 277 | 187 | 5 | 33 | 305 | 57 | 317 | 2.73e-13 | 71.2 |
| Msa0427710 | AT2G36590.2 | 24.332 | 337 | 224 | 12 | 9 | 340 | 2 | 312 | 9.82e-12 | 66.6 |
Find 113 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCATTTAGAACTCCATTT+TGG | 0.108522 | 3_2:+78383502 | None:intergenic |
| GTTCAGTACTTGTATCTTTA+TGG | 0.129160 | 3_2:-78385356 | Msa0427710:CDS |
| TCCTTTCTTTAATGATGTTC+TGG | 0.137749 | 3_2:-78383602 | Msa0427710:CDS |
| TTCTTGGAGCAGTGGGATTT+TGG | 0.180772 | 3_2:-78383576 | Msa0427710:CDS |
| AATGATGTTCTGGGATTTCT+TGG | 0.212555 | 3_2:-78383592 | Msa0427710:CDS |
| ACTGGATAATAAACTGTTAA+AGG | 0.224075 | 3_2:+78383553 | None:intergenic |
| TCAAATTCTCATTGAAATTC+AGG | 0.231508 | 3_2:-78384127 | Msa0427710:intron |
| CCATCGTCGTCGAAGTATTC+AGG | 0.273974 | 3_2:+78386221 | None:intergenic |
| TAAATCTATTTAGATTAGTT+TGG | 0.281769 | 3_2:-78383669 | Msa0427710:CDS |
| CCTTTCTTTAATGATGTTCT+GGG | 0.306108 | 3_2:-78383601 | Msa0427710:CDS |
| TCCCAAAATGGAGTTCTAAA+TGG | 0.320619 | 3_2:-78383504 | Msa0427710:CDS |
| TGAATGGCTTGTAATGCTTT+AGG | 0.330057 | 3_2:+78383398 | None:intergenic |
| TCCAGCTTGGCTCATCGATT+TGG | 0.332874 | 3_2:-78383842 | Msa0427710:CDS |
| TATCTTTATGGCAGTGCAAT+AGG | 0.337033 | 3_2:-78385344 | Msa0427710:CDS |
| ATAGCTGCAATAATGTCTTT+TGG | 0.346313 | 3_2:-78384614 | Msa0427710:CDS |
| AGCATGGGCTACGGCACAAT+TGG | 0.349061 | 3_2:-78385844 | Msa0427710:CDS |
| TCTAGATGTCTCCATTTATC+AGG | 0.357700 | 3_2:-78384749 | Msa0427710:CDS |
| AACGACGATAACCTGCTGTT+TGG | 0.358251 | 3_2:+78384558 | None:intergenic |
| AACCCATACATGATCAGTTT+TGG | 0.359942 | 3_2:-78384698 | Msa0427710:CDS |
| ATCAACTCACATCATGCTAA+TGG | 0.372993 | 3_2:+78385304 | None:intergenic |
| TTCTGAAGGGACACCATCTA+TGG | 0.373125 | 3_2:+78386250 | None:intergenic |
| TAATGTGTACCTGTTCGTTT+AGG | 0.376426 | 3_2:+78386194 | None:intergenic |
| TGCATGGGCTATGCTGCATT+TGG | 0.377828 | 3_2:-78383910 | Msa0427710:CDS |
| CTAAATAGATTTAGATTGTA+AGG | 0.384304 | 3_2:+78383679 | None:intergenic |
| GATGCAGTTCGTAGCATTCT+TGG | 0.385053 | 3_2:-78385696 | Msa0427710:intron |
| CATATAATAACAGCTGTGAT+TGG | 0.385307 | 3_2:-78385885 | Msa0427710:CDS |
| GTATCAGTTGTGGCTGCTCT+TGG | 0.389248 | 3_2:-78383445 | Msa0427710:CDS |
| CTTTAGGTCCTCTATAATAC+TGG | 0.396377 | 3_2:+78383414 | None:intergenic |
| GGGTTGGATTGGTGGTCCTT+TGG | 0.399149 | 3_2:-78385823 | Msa0427710:CDS |
| ATAACAGCTGTGATTGGGTC+TGG | 0.401374 | 3_2:-78385879 | Msa0427710:CDS |
| GTTATGAGTCAGGAACAATA+TGG | 0.405471 | 3_2:-78385920 | Msa0427710:intron |
| ACTCCAAAACTGATCATGTA+TGG | 0.410066 | 3_2:+78384695 | None:intergenic |
| CTGGGATTTCTTGGAGCAGT+GGG | 0.412618 | 3_2:-78383583 | Msa0427710:CDS |
| TGCAAAGGAAGATCCCAAAA+TGG | 0.417168 | 3_2:-78383516 | Msa0427710:CDS |
| ACGACGATAACCTGCTGTTT+GGG | 0.418197 | 3_2:+78384559 | None:intergenic |
| ACAAAGTGACGAGGCTGAAA+AGG | 0.428865 | 3_2:+78385793 | None:intergenic |
| TTATTTGCTTTGTGGCTGCA+TGG | 0.440989 | 3_2:-78383926 | Msa0427710:CDS |
| ACCTTCAAGGGTACTCTCAC+TGG | 0.442148 | 3_2:-78384237 | Msa0427710:CDS |
| AACAGAAAATGGTACCTTCA+AGG | 0.444400 | 3_2:-78384250 | Msa0427710:intron |
| AACCGGAGCCATTCCATAGA+TGG | 0.448209 | 3_2:-78386263 | Msa0427710:CDS |
| CTGGGGTGCTATCCTTAGCA+TGG | 0.450709 | 3_2:-78385860 | Msa0427710:CDS |
| GTCTTTGCCTTCGTAGAGAA+AGG | 0.451734 | 3_2:-78383763 | Msa0427710:CDS |
| TCAACTCACATCATGCTAAT+GGG | 0.455025 | 3_2:+78385305 | None:intergenic |
| AAGAAGAAATAGAAAGAAAC+CGG | 0.458125 | 3_2:-78386280 | Msa0427710:CDS |
| ACATTGCAACAAAAGTAGTT+AGG | 0.463138 | 3_2:+78383629 | None:intergenic |
| CTATTCCACAAACCGTGTAT+TGG | 0.465036 | 3_2:+78385378 | None:intergenic |
| GCATGGGCTACGGCACAATT+GGG | 0.465627 | 3_2:-78385843 | Msa0427710:CDS |
| TCCAGTGAGAGTACCCTTGA+AGG | 0.465923 | 3_2:+78384236 | None:intergenic |
| GCACAATTGGGTTGGATTGG+TGG | 0.466018 | 3_2:-78385831 | Msa0427710:CDS |
| TAAGGACGAAAACCCGGGAT+TGG | 0.471537 | 3_2:+78383697 | None:intergenic |
| GTCAACAACAACAAAATTGT+GGG | 0.475137 | 3_2:-78384196 | Msa0427710:CDS |
| GCCAAATCGATGAGCCAAGC+TGG | 0.477067 | 3_2:+78383841 | None:intergenic |
| GGGCGCCAATACACGGTTTG+TGG | 0.479067 | 3_2:-78385383 | Msa0427710:CDS |
| TATTTGCTTTGTGGCTGCAT+GGG | 0.481138 | 3_2:-78383925 | Msa0427710:CDS |
| TAGCTTCTCTTTCCATGCAC+AGG | 0.488301 | 3_2:+78385729 | None:intergenic |
| ATATAATAACAGCTGTGATT+GGG | 0.488499 | 3_2:-78385884 | Msa0427710:CDS |
| GGGCTACGGCACAATTGGGT+TGG | 0.489975 | 3_2:-78385839 | Msa0427710:CDS |
| TGCTGCTCCTTTCTCTACGA+AGG | 0.498588 | 3_2:+78383756 | None:intergenic |
| GCCGTCGTAATCCACCTTGT+GGG | 0.501113 | 3_2:-78383811 | Msa0427710:CDS |
| CCCAGAACATCATTAAAGAA+AGG | 0.503059 | 3_2:+78383601 | None:intergenic |
| GCACCAGGGAACTTGCTCAC+TGG | 0.503377 | 3_2:-78383880 | Msa0427710:CDS |
| TTCTCTACGAAGGCAAAGAC+AGG | 0.507161 | 3_2:+78383766 | None:intergenic |
| CTCAACCGCCAGTATTATAG+AGG | 0.511484 | 3_2:-78383422 | Msa0427710:CDS |
| ATGCTTTATTGTATCAGTTG+TGG | 0.512651 | 3_2:-78383455 | Msa0427710:CDS |
| GATGGTCGTCCTAAACGAAC+AGG | 0.514219 | 3_2:-78386203 | Msa0427710:intron |
| TTAGCAATTTCCCAAACAGC+AGG | 0.515563 | 3_2:-78384569 | Msa0427710:intron |
| TAACAGCTGTGATTGGGTCT+GGG | 0.516920 | 3_2:-78385878 | Msa0427710:CDS |
| ACAGAAAATGGTACCTTCAA+GGG | 0.518566 | 3_2:-78384249 | Msa0427710:intron |
| TGTCAACAACAACAAAATTG+TGG | 0.522475 | 3_2:-78384197 | Msa0427710:CDS |
| GATTGTAAGGACGAAAACCC+GGG | 0.523575 | 3_2:+78383692 | None:intergenic |
| GGAACACAAAATTCCAATCC+CGG | 0.528501 | 3_2:-78383710 | Msa0427710:CDS |
| GCATTTGGAGAACAAGCACC+AGG | 0.529176 | 3_2:-78383895 | Msa0427710:CDS |
| CACCATCTATGGAATGGCTC+CGG | 0.534833 | 3_2:+78386261 | None:intergenic |
| TGCCGTCGTAATCCACCTTG+TGG | 0.547983 | 3_2:-78383812 | Msa0427710:CDS |
| ACGGCACAATTGGGTTGGAT+TGG | 0.551307 | 3_2:-78385834 | Msa0427710:CDS |
| TATTCAGGATCAAGTTCTGA+AGG | 0.553591 | 3_2:+78386236 | None:intergenic |
| AAGATGGCCCCAAACAAAAG+TGG | 0.554048 | 3_2:-78383731 | Msa0427710:CDS |
| GCTCAATACTCTGAGCTGAA+TGG | 0.555896 | 3_2:+78383382 | None:intergenic |
| AGACAGGTTGAACATATACT+TGG | 0.557340 | 3_2:+78383782 | None:intergenic |
| TGCAGGCGGGCGCCAATACA+CGG | 0.557733 | 3_2:-78385390 | Msa0427710:intron |
| AGATTGTAAGGACGAAAACC+CGG | 0.560505 | 3_2:+78383691 | None:intergenic |
| CTCCAAAACTGATCATGTAT+GGG | 0.563692 | 3_2:+78384696 | None:intergenic |
| TCTGGGATTTCTTGGAGCAG+TGG | 0.566045 | 3_2:-78383584 | Msa0427710:CDS |
| AATCCAGTGAGCAAGTTCCC+TGG | 0.566335 | 3_2:+78383877 | None:intergenic |
| TTTAACAGTTTATTATCCAG+TGG | 0.568524 | 3_2:-78383551 | Msa0427710:CDS |
| TGCAAGATATACATCTCCAC+TGG | 0.575990 | 3_2:+78383535 | None:intergenic |
| TGGGGTGCTATCCTTAGCAT+GGG | 0.576138 | 3_2:-78385859 | Msa0427710:CDS |
| TTAGTATGTACAATCCAGCT+TGG | 0.584076 | 3_2:-78383855 | Msa0427710:CDS |
| AACAGCTGTGATTGGGTCTG+GGG | 0.588270 | 3_2:-78385877 | Msa0427710:CDS |
| GAACACAAAATTCCAATCCC+GGG | 0.593016 | 3_2:-78383709 | Msa0427710:CDS |
| AAGGGACACCATCTATGGAA+TGG | 0.597405 | 3_2:+78386255 | None:intergenic |
| CCTGAATACTTCGACGACGA+TGG | 0.603286 | 3_2:-78386221 | Msa0427710:CDS |
| TTGTGCCGTAGCCCATGCTA+AGG | 0.606269 | 3_2:+78385848 | None:intergenic |
| TGGAGATGTATATCTTGCAA+AGG | 0.629124 | 3_2:-78383531 | Msa0427710:CDS |
| TTGAGAGTATGAATAAGCAA+AGG | 0.634614 | 3_2:+78384146 | None:intergenic |
| AGATGTCTCCATTTATCAGG+AGG | 0.634869 | 3_2:-78384746 | Msa0427710:CDS |
| TAGGTCCTCTATAATACTGG+CGG | 0.635831 | 3_2:+78383417 | None:intergenic |
| CTAGCTGAATGTTATCGTTG+TGG | 0.636182 | 3_2:-78385756 | Msa0427710:CDS |
| CGTTGTGGAGATCCTGTGCA+TGG | 0.641437 | 3_2:-78385741 | Msa0427710:CDS |
| TTCCAGAGTTTCATAATACG+TGG | 0.645176 | 3_2:-78384649 | Msa0427710:CDS |
| CACCACGTATTATGAAACTC+TGG | 0.648752 | 3_2:+78384647 | None:intergenic |
| ATTCAGGATCAAGTTCTGAA+GGG | 0.648974 | 3_2:+78386237 | None:intergenic |
| TTCAAGGGTACTCTCACTGG+AGG | 0.649496 | 3_2:-78384234 | Msa0427710:CDS |
| GGGTTGCTTGACATGTGACA+TGG | 0.650556 | 3_2:+78384716 | None:intergenic |
| CTGAAAAGGATCATCACCAA+AGG | 0.653603 | 3_2:+78385807 | None:intergenic |
| TCAACAACAACAAAATTGTG+GGG | 0.655949 | 3_2:-78384195 | Msa0427710:CDS |
| GCTATCCTTAGCATGGGCTA+CGG | 0.662463 | 3_2:-78385853 | Msa0427710:CDS |
| CAGAGTTTCATAATACGTGG+TGG | 0.670066 | 3_2:-78384646 | Msa0427710:CDS |
| CTTGGTATGCTCCCACAAGG+TGG | 0.675365 | 3_2:+78383800 | None:intergenic |
| ATACTTGGTATGCTCCCACA+AGG | 0.692310 | 3_2:+78383797 | None:intergenic |
| ATGAAGTATACAAAGTGACG+AGG | 0.719582 | 3_2:+78385784 | None:intergenic |
| TCCCACAAGGTGGATTACGA+CGG | 0.722373 | 3_2:+78383810 | None:intergenic |
| CATTTGGAGAACAAGCACCA+GGG | 0.723647 | 3_2:-78383894 | Msa0427710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAATTAATT+CGG | - | chr3_2:78385364-78385383 | Msa0427710:CDS | 0.0% |
| !!! | TTATATAATTTTACGTTAAA+TGG | - | chr3_2:78383510-78383529 | Msa0427710:CDS | 10.0% |
| !!! | TTTTTTATGTCTAATTTTTA+TGG | - | chr3_2:78383682-78383701 | Msa0427710:CDS | 10.0% |
| !!! | TTTTTATGTCTAATTTTTAT+GGG | - | chr3_2:78383683-78383702 | Msa0427710:CDS | 10.0% |
| !! | AAAAAAAAAAAATTAATTCG+GGG | - | chr3_2:78385366-78385385 | Msa0427710:CDS | 10.0% |
| !!! | TTTTAATTAAGATAAAGAAA+GGG | + | chr3_2:78385586-78385605 | None:intergenic | 10.0% |
| !!! | ATTTTAATTAAGATAAAGAA+AGG | + | chr3_2:78385587-78385606 | None:intergenic | 10.0% |
| !!! | AAAGCATGTATATTATTTTT+TGG | - | chr3_2:78384161-78384180 | Msa0427710:CDS | 15.0% |
| !! | ATATATTAATTACCATTAGT+GGG | - | chr3_2:78384561-78384580 | Msa0427710:intron | 15.0% |
| !! | AAAAAAAAAAAAACCATTGA+TGG | - | chr3_2:78384743-78384762 | Msa0427710:CDS | 15.0% |
| !!! | TTGATGAGTTTATTTTAATT+TGG | - | chr3_2:78384879-78384898 | Msa0427710:intron | 15.0% |
| !!! | TGATGAGTTTATTTTAATTT+GGG | - | chr3_2:78384880-78384899 | Msa0427710:intron | 15.0% |
| !!! | TAAATCTATTTAGATTAGTT+TGG | - | chr3_2:78386002-78386021 | Msa0427710:intron | 15.0% |
| !!! | TTAAATTTTCATTACTAGGA+GGG | + | chr3_2:78383717-78383736 | None:intergenic | 20.0% |
| !!! | TGTGTTAAATTTTCATTACT+AGG | + | chr3_2:78383721-78383740 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGTTATGAGTC+AGG | - | chr3_2:78383741-78383760 | Msa0427710:CDS | 20.0% |
| !!! | AATGTGTTTGTATTTAAGAT+CGG | - | chr3_2:78384094-78384113 | Msa0427710:intron | 20.0% |
| !! | ATGCTTGTAAAAGATAATTA+CGG | + | chr3_2:78384401-78384420 | None:intergenic | 20.0% |
| !! | GATATATTAATTACCATTAG+TGG | - | chr3_2:78384560-78384579 | Msa0427710:intron | 20.0% |
| !! | ATAAGTATAACCTAAAAAGA+AGG | - | chr3_2:78384705-78384724 | Msa0427710:CDS | 20.0% |
| !! | TCTTACTTCTATTATTGATA+GGG | - | chr3_2:78384837-78384856 | Msa0427710:intron | 20.0% |
| !!! | ACTGATTTTTAAACAGAAAA+TGG | - | chr3_2:78385410-78385429 | Msa0427710:intron | 20.0% |
| !!! | TATATATTTTTACTACACAC+AGG | - | chr3_2:78385643-78385662 | Msa0427710:intron | 20.0% |
| !!! | ATTCTTCATCGTTTTTATTT+CGG | + | chr3_2:78385690-78385709 | None:intergenic | 20.0% |
| !! | CTAAATAGATTTAGATTGTA+AGG | + | chr3_2:78385995-78386014 | None:intergenic | 20.0% |
| ! | AAGAAGAAATAGAAAGAAAC+CGG | - | chr3_2:78383391-78383410 | Msa0427710:CDS | 25.0% |
| ! | GAATTTCACAAGTTTACATT+TGG | - | chr3_2:78383600-78383619 | Msa0427710:CDS | 25.0% |
| !! | GTTAAATTTTCATTACTAGG+AGG | + | chr3_2:78383718-78383737 | None:intergenic | 25.0% |
| ! | ATATAATAACAGCTGTGATT+GGG | - | chr3_2:78383787-78383806 | Msa0427710:CDS | 25.0% |
| ! | GATGTAATATTCTTAAGAGT+TGG | - | chr3_2:78384220-78384239 | Msa0427710:CDS | 25.0% |
| !! | TAGTTTCAAACATAATTTGC+AGG | - | chr3_2:78384264-78384283 | Msa0427710:intron | 25.0% |
| ! | TGTAAAAGATAATTACGGTA+TGG | + | chr3_2:78384396-78384415 | None:intergenic | 25.0% |
| !! | CAATATCAATCCTTCTTTTT+AGG | + | chr3_2:78384718-78384737 | None:intergenic | 25.0% |
| !!! | ACATATTTTTGATCCATCAA+TGG | + | chr3_2:78384759-78384778 | None:intergenic | 25.0% |
| !! | ACAAATGCTAATAGGTATTT+TGG | + | chr3_2:78384818-78384837 | None:intergenic | 25.0% |
| ! | GTCTTACTTCTATTATTGAT+AGG | - | chr3_2:78384836-78384855 | Msa0427710:intron | 25.0% |
| !!! | TTTATTTTAATTTGGGTGAC+AGG | - | chr3_2:78384887-78384906 | Msa0427710:intron | 25.0% |
| !!! | TTATTTTAATTTGGGTGACA+GGG | - | chr3_2:78384888-78384907 | Msa0427710:intron | 25.0% |
| ! | ATTCTTGATCATGTACTTTA+CGG | - | chr3_2:78385279-78385298 | Msa0427710:intron | 25.0% |
| ! | TCAAATTCTCATTGAAATTC+AGG | - | chr3_2:78385544-78385563 | Msa0427710:intron | 25.0% |
| ! | ACTGGATAATAAACTGTTAA+AGG | + | chr3_2:78386121-78386140 | None:intergenic | 25.0% |
| ! | TTTAACAGTTTATTATCCAG+TGG | - | chr3_2:78386120-78386139 | Msa0427710:intron | 25.0% |
| CATATAATAACAGCTGTGAT+TGG | - | chr3_2:78383786-78383805 | Msa0427710:CDS | 30.0% | |
| ! | AAAGAGAAGCTATACTTTTG+TGG | - | chr3_2:78383953-78383972 | Msa0427710:CDS | 30.0% |
| ! | TTGCTTGTATTTAAGAGCAT+GGG | + | chr3_2:78384040-78384059 | None:intergenic | 30.0% |
| TTTGCTTGTATTTAAGAGCA+TGG | + | chr3_2:78384041-78384060 | None:intergenic | 30.0% | |
| ! | TTTCAAACATAATTTGCAGG+CGG | - | chr3_2:78384267-78384286 | Msa0427710:intron | 30.0% |
| GTTCAGTACTTGTATCTTTA+TGG | - | chr3_2:78384315-78384334 | Msa0427710:intron | 30.0% | |
| GAAGTAAGACAAATGCTAAT+AGG | + | chr3_2:78384826-78384845 | None:intergenic | 30.0% | |
| ! | ATAGCTGCAATAATGTCTTT+TGG | - | chr3_2:78385057-78385076 | Msa0427710:intron | 30.0% |
| ATCAAACAATTGTACTCAAG+TGG | - | chr3_2:78385204-78385223 | Msa0427710:intron | 30.0% | |
| ! | AGAACTTGGTTCTCTAAATT+TGG | + | chr3_2:78385243-78385262 | None:intergenic | 30.0% |
| TTACATCCAAAAGTAGAACT+TGG | + | chr3_2:78385257-78385276 | None:intergenic | 30.0% | |
| !!! | TGTTAACAGTCTCGTTTTTT+GGG | + | chr3_2:78385338-78385357 | None:intergenic | 30.0% |
| TGTCAACAACAACAAAATTG+TGG | - | chr3_2:78385474-78385493 | Msa0427710:intron | 30.0% | |
| GTCAACAACAACAAAATTGT+GGG | - | chr3_2:78385475-78385494 | Msa0427710:intron | 30.0% | |
| TCAACAACAACAAAATTGTG+GGG | - | chr3_2:78385476-78385495 | Msa0427710:intron | 30.0% | |
| ! | TTGAGAGTATGAATAAGCAA+AGG | + | chr3_2:78385528-78385547 | None:intergenic | 30.0% |
| !! | TTCATCGTTTTTATTTCGGA+TGG | + | chr3_2:78385686-78385705 | None:intergenic | 30.0% |
| !! | ACAGCATTTTATTTGCTTTG+TGG | - | chr3_2:78385737-78385756 | Msa0427710:CDS | 30.0% |
| !! | TTTGTGTTCCACTTTTGTTT+GGG | + | chr3_2:78385951-78385970 | None:intergenic | 30.0% |
| !! | TTTTGTGTTCCACTTTTGTT+TGG | + | chr3_2:78385952-78385971 | None:intergenic | 30.0% |
| ACATTGCAACAAAAGTAGTT+AGG | + | chr3_2:78386045-78386064 | None:intergenic | 30.0% | |
| TCCTTTCTTTAATGATGTTC+TGG | - | chr3_2:78386069-78386088 | Msa0427710:intron | 30.0% | |
| CCTTTCTTTAATGATGTTCT+GGG | - | chr3_2:78386070-78386089 | Msa0427710:intron | 30.0% | |
| !! | TCCATTTAGAACTCCATTTT+GGG | + | chr3_2:78386171-78386190 | None:intergenic | 30.0% |
| !! | ATCCATTTAGAACTCCATTT+TGG | + | chr3_2:78386172-78386191 | None:intergenic | 30.0% |
| !!! | GAGTTCTAAATGGATTTTGT+TGG | - | chr3_2:78386177-78386196 | Msa0427710:intron | 30.0% |
| ! | ATGCTTTATTGTATCAGTTG+TGG | - | chr3_2:78386216-78386235 | Msa0427710:CDS | 30.0% |
| !! | ATTCAGGATCAAGTTCTGAA+GGG | + | chr3_2:78383437-78383456 | None:intergenic | 35.0% |
| ! | TATTCAGGATCAAGTTCTGA+AGG | + | chr3_2:78383438-78383457 | None:intergenic | 35.0% |
| TAATGTGTACCTGTTCGTTT+AGG | + | chr3_2:78383480-78383499 | None:intergenic | 35.0% | |
| GTTATGAGTCAGGAACAATA+TGG | - | chr3_2:78383751-78383770 | Msa0427710:CDS | 35.0% | |
| ATGAAGTATACAAAGTGACG+AGG | + | chr3_2:78383890-78383909 | None:intergenic | 35.0% | |
| ! | TTCAAACATAATTTGCAGGC+GGG | - | chr3_2:78384268-78384287 | Msa0427710:intron | 35.0% |
| TATCTTTATGGCAGTGCAAT+AGG | - | chr3_2:78384327-78384346 | Msa0427710:intron | 35.0% | |
| TCAACTCACATCATGCTAAT+GGG | + | chr3_2:78384369-78384388 | None:intergenic | 35.0% | |
| ATCAACTCACATCATGCTAA+TGG | + | chr3_2:78384370-78384389 | None:intergenic | 35.0% | |
| !! | TTGTTCTAAAGACCCACTAA+TGG | + | chr3_2:78384576-78384595 | None:intergenic | 35.0% |
| TCTAGATGTCTCCATTTATC+AGG | - | chr3_2:78384922-78384941 | Msa0427710:intron | 35.0% | |
| ! | GATCTTTTCCTCCTGATAAA+TGG | + | chr3_2:78384936-78384955 | None:intergenic | 35.0% |
| ! | AACCCATACATGATCAGTTT+TGG | - | chr3_2:78384973-78384992 | Msa0427710:intron | 35.0% |
| CTCCAAAACTGATCATGTAT+GGG | + | chr3_2:78384978-78384997 | None:intergenic | 35.0% | |
| ACTCCAAAACTGATCATGTA+TGG | + | chr3_2:78384979-78384998 | None:intergenic | 35.0% | |
| TTCCAGAGTTTCATAATACG+TGG | - | chr3_2:78385022-78385041 | Msa0427710:intron | 35.0% | |
| ! | AGAGAACCAAGTTCTACTTT+TGG | - | chr3_2:78385248-78385267 | Msa0427710:intron | 35.0% |
| !!! | GTTAACAGTCTCGTTTTTTG+GGG | + | chr3_2:78385337-78385356 | None:intergenic | 35.0% |
| !!! | GTGTTAACAGTCTCGTTTTT+TGG | + | chr3_2:78385339-78385358 | None:intergenic | 35.0% |
| AACAGAAAATGGTACCTTCA+AGG | - | chr3_2:78385421-78385440 | Msa0427710:intron | 35.0% | |
| ACAGAAAATGGTACCTTCAA+GGG | - | chr3_2:78385422-78385441 | Msa0427710:intron | 35.0% | |
| !! | ATCGTTTTTATTTCGGATGG+TGG | + | chr3_2:78385683-78385702 | None:intergenic | 35.0% |
| TTAGTATGTACAATCCAGCT+TGG | - | chr3_2:78385816-78385835 | Msa0427710:CDS | 35.0% | |
| ! | AGACAGGTTGAACATATACT+TGG | + | chr3_2:78385892-78385911 | None:intergenic | 35.0% |
| !! | TTGTGTTCCACTTTTGTTTG+GGG | + | chr3_2:78385950-78385969 | None:intergenic | 35.0% |
| CCCAGAACATCATTAAAGAA+AGG | + | chr3_2:78386073-78386092 | None:intergenic | 35.0% | |
| !! | AATGATGTTCTGGGATTTCT+TGG | - | chr3_2:78386079-78386098 | Msa0427710:intron | 35.0% |
| TGGAGATGTATATCTTGCAA+AGG | - | chr3_2:78386140-78386159 | Msa0427710:intron | 35.0% | |
| !! | TCCCAAAATGGAGTTCTAAA+TGG | - | chr3_2:78386167-78386186 | Msa0427710:intron | 35.0% |
| CTTTAGGTCCTCTATAATAC+TGG | + | chr3_2:78386260-78386279 | None:intergenic | 35.0% | |
| ! | TGAATGGCTTGTAATGCTTT+AGG | + | chr3_2:78386276-78386295 | None:intergenic | 35.0% |
| !! | GTGTCGATCTTTTGTCTTCT+TGG | - | chr3_2:78383622-78383641 | Msa0427710:CDS | 40.0% |
| CTGAAAAGGATCATCACCAA+AGG | + | chr3_2:78383867-78383886 | None:intergenic | 40.0% | |
| CTAGCTGAATGTTATCGTTG+TGG | - | chr3_2:78383915-78383934 | Msa0427710:CDS | 40.0% | |
| CTATTCCACAAACCGTGTAT+TGG | + | chr3_2:78384296-78384315 | None:intergenic | 40.0% | |
| AGATGTCTCCATTTATCAGG+AGG | - | chr3_2:78384925-78384944 | Msa0427710:intron | 40.0% | |
| CACCACGTATTATGAAACTC+TGG | + | chr3_2:78385027-78385046 | None:intergenic | 40.0% | |
| CAGAGTTTCATAATACGTGG+TGG | - | chr3_2:78385025-78385044 | Msa0427710:intron | 40.0% | |
| !! | TCTTTTGGCTATTCCACAGT+TGG | - | chr3_2:78385072-78385091 | Msa0427710:intron | 40.0% |
| TTAGCAATTTCCCAAACAGC+AGG | - | chr3_2:78385102-78385121 | Msa0427710:intron | 40.0% | |
| !!! | TGGGGAATTTTTCAAGCTCT+TGG | - | chr3_2:78385494-78385513 | Msa0427710:intron | 40.0% |
| TTATTTGCTTTGTGGCTGCA+TGG | - | chr3_2:78385745-78385764 | Msa0427710:CDS | 40.0% | |
| TATTTGCTTTGTGGCTGCAT+GGG | - | chr3_2:78385746-78385765 | Msa0427710:CDS | 40.0% | |
| AGAAAGGAGCAGCAAAAAGA+TGG | - | chr3_2:78385924-78385943 | Msa0427710:intron | 40.0% | |
| GGAACACAAAATTCCAATCC+CGG | - | chr3_2:78385961-78385980 | Msa0427710:intron | 40.0% | |
| GAACACAAAATTCCAATCCC+GGG | - | chr3_2:78385962-78385981 | Msa0427710:intron | 40.0% | |
| AGATTGTAAGGACGAAAACC+CGG | + | chr3_2:78385983-78386002 | None:intergenic | 40.0% | |
| TGCAAGATATACATCTCCAC+TGG | + | chr3_2:78386139-78386158 | None:intergenic | 40.0% | |
| TGCAAAGGAAGATCCCAAAA+TGG | - | chr3_2:78386155-78386174 | Msa0427710:intron | 40.0% | |
| TAGGTCCTCTATAATACTGG+CGG | + | chr3_2:78386257-78386276 | None:intergenic | 40.0% | |
| AAGGGACACCATCTATGGAA+TGG | + | chr3_2:78383419-78383438 | None:intergenic | 45.0% | |
| ! | TTCTGAAGGGACACCATCTA+TGG | + | chr3_2:78383424-78383443 | None:intergenic | 45.0% |
| ATAACAGCTGTGATTGGGTC+TGG | - | chr3_2:78383792-78383811 | Msa0427710:CDS | 45.0% | |
| TAACAGCTGTGATTGGGTCT+GGG | - | chr3_2:78383793-78383812 | Msa0427710:CDS | 45.0% | |
| ACAAAGTGACGAGGCTGAAA+AGG | + | chr3_2:78383881-78383900 | None:intergenic | 45.0% | |
| TAGCTTCTCTTTCCATGCAC+AGG | + | chr3_2:78383945-78383964 | None:intergenic | 45.0% | |
| GATGCAGTTCGTAGCATTCT+TGG | - | chr3_2:78383975-78383994 | Msa0427710:CDS | 45.0% | |
| TGCTAAAAAGACGCCAACTG+TGG | + | chr3_2:78385088-78385107 | None:intergenic | 45.0% | |
| ! | ACGACGATAACCTGCTGTTT+GGG | + | chr3_2:78385115-78385134 | None:intergenic | 45.0% |
| AACGACGATAACCTGCTGTT+TGG | + | chr3_2:78385116-78385135 | None:intergenic | 45.0% | |
| !!! | CAGTCTCGTTTTTTGGGGAA+AGG | + | chr3_2:78385332-78385351 | None:intergenic | 45.0% |
| CATTTGGAGAACAAGCACCA+GGG | - | chr3_2:78385777-78385796 | Msa0427710:CDS | 45.0% | |
| ATACTTGGTATGCTCCCACA+AGG | + | chr3_2:78385877-78385896 | None:intergenic | 45.0% | |
| TTCTCTACGAAGGCAAAGAC+AGG | + | chr3_2:78385908-78385927 | None:intergenic | 45.0% | |
| GTCTTTGCCTTCGTAGAGAA+AGG | - | chr3_2:78385908-78385927 | Msa0427710:CDS | 45.0% | |
| AAGATGGCCCCAAACAAAAG+TGG | - | chr3_2:78385940-78385959 | Msa0427710:intron | 45.0% | |
| GATTGTAAGGACGAAAACCC+GGG | + | chr3_2:78385982-78386001 | None:intergenic | 45.0% | |
| ! | TTCTTGGAGCAGTGGGATTT+TGG | - | chr3_2:78386095-78386114 | Msa0427710:intron | 45.0% |
| CTCAACCGCCAGTATTATAG+AGG | - | chr3_2:78386249-78386268 | Msa0427710:CDS | 45.0% | |
| !! | AAAAAAAAAAAAATTAATTC+GGG | - | chr3_2:78385365-78385384 | Msa0427710:CDS | 5.0% |
| AACCGGAGCCATTCCATAGA+TGG | - | chr3_2:78383408-78383427 | Msa0427710:CDS | 50.0% | |
| CACCATCTATGGAATGGCTC+CGG | + | chr3_2:78383413-78383432 | None:intergenic | 50.0% | |
| ! | CCATCGTCGTCGAAGTATTC+AGG | + | chr3_2:78383453-78383472 | None:intergenic | 50.0% |
| CCTGAATACTTCGACGACGA+TGG | - | chr3_2:78383450-78383469 | Msa0427710:CDS | 50.0% | |
| GATGGTCGTCCTAAACGAAC+AGG | - | chr3_2:78383468-78383487 | Msa0427710:CDS | 50.0% | |
| AACAGCTGTGATTGGGTCTG+GGG | - | chr3_2:78383794-78383813 | Msa0427710:CDS | 50.0% | |
| ! | TGGGGTGCTATCCTTAGCAT+GGG | - | chr3_2:78383812-78383831 | Msa0427710:CDS | 50.0% |
| ! | GCTATCCTTAGCATGGGCTA+CGG | - | chr3_2:78383818-78383837 | Msa0427710:CDS | 50.0% |
| !! | ACGGCACAATTGGGTTGGAT+TGG | - | chr3_2:78383837-78383856 | Msa0427710:CDS | 50.0% |
| !! | GCACAATTGGGTTGGATTGG+TGG | - | chr3_2:78383840-78383859 | Msa0427710:CDS | 50.0% |
| GGGTTGCTTGACATGTGACA+TGG | + | chr3_2:78384958-78384977 | None:intergenic | 50.0% | |
| ACGGTAACTCGAACGAACTC+AGG | - | chr3_2:78385298-78385317 | Msa0427710:intron | 50.0% | |
| !! | ACCTTCAAGGGTACTCTCAC+TGG | - | chr3_2:78385434-78385453 | Msa0427710:intron | 50.0% |
| !! | TCCAGTGAGAGTACCCTTGA+AGG | + | chr3_2:78385438-78385457 | None:intergenic | 50.0% |
| !! | TTCAAGGGTACTCTCACTGG+AGG | - | chr3_2:78385437-78385456 | Msa0427710:intron | 50.0% |
| ! | TGCATGGGCTATGCTGCATT+TGG | - | chr3_2:78385761-78385780 | Msa0427710:CDS | 50.0% |
| GCATTTGGAGAACAAGCACC+AGG | - | chr3_2:78385776-78385795 | Msa0427710:CDS | 50.0% | |
| AATCCAGTGAGCAAGTTCCC+TGG | + | chr3_2:78385797-78385816 | None:intergenic | 50.0% | |
| ! | TCCAGCTTGGCTCATCGATT+TGG | - | chr3_2:78385829-78385848 | Msa0427710:CDS | 50.0% |
| !! | TCCCACAAGGTGGATTACGA+CGG | + | chr3_2:78385864-78385883 | None:intergenic | 50.0% |
| TGCTGCTCCTTTCTCTACGA+AGG | + | chr3_2:78385918-78385937 | None:intergenic | 50.0% | |
| TAAGGACGAAAACCCGGGAT+TGG | + | chr3_2:78385977-78385996 | None:intergenic | 50.0% | |
| ! | TCTGGGATTTCTTGGAGCAG+TGG | - | chr3_2:78386087-78386106 | Msa0427710:intron | 50.0% |
| CTGGGATTTCTTGGAGCAGT+GGG | - | chr3_2:78386088-78386107 | Msa0427710:intron | 50.0% | |
| GTATCAGTTGTGGCTGCTCT+TGG | - | chr3_2:78386226-78386245 | Msa0427710:CDS | 50.0% | |
| ! | CTGGGGTGCTATCCTTAGCA+TGG | - | chr3_2:78383811-78383830 | Msa0427710:CDS | 55.0% |
| TTGTGCCGTAGCCCATGCTA+AGG | + | chr3_2:78383826-78383845 | None:intergenic | 55.0% | |
| ! | AGCATGGGCTACGGCACAAT+TGG | - | chr3_2:78383827-78383846 | Msa0427710:CDS | 55.0% |
| ! | GCATGGGCTACGGCACAATT+GGG | - | chr3_2:78383828-78383847 | Msa0427710:CDS | 55.0% |
| !! | GGGTTGGATTGGTGGTCCTT+TGG | - | chr3_2:78383848-78383867 | Msa0427710:CDS | 55.0% |
| CGTTGTGGAGATCCTGTGCA+TGG | - | chr3_2:78383930-78383949 | Msa0427710:CDS | 55.0% | |
| GCCAAATCGATGAGCCAAGC+TGG | + | chr3_2:78385833-78385852 | None:intergenic | 55.0% | |
| TGCCGTCGTAATCCACCTTG+TGG | - | chr3_2:78385859-78385878 | Msa0427710:CDS | 55.0% | |
| GCCGTCGTAATCCACCTTGT+GGG | - | chr3_2:78385860-78385879 | Msa0427710:CDS | 55.0% | |
| CTTGGTATGCTCCCACAAGG+TGG | + | chr3_2:78385874-78385893 | None:intergenic | 55.0% | |
| GGGCTACGGCACAATTGGGT+TGG | - | chr3_2:78383832-78383851 | Msa0427710:CDS | 60.0% | |
| GGGCGCCAATACACGGTTTG+TGG | - | chr3_2:78384288-78384307 | Msa0427710:intron | 60.0% | |
| ! | GCACCAGGGAACTTGCTCAC+TGG | - | chr3_2:78385791-78385810 | Msa0427710:CDS | 60.0% |
| TGCAGGCGGGCGCCAATACA+CGG | - | chr3_2:78384281-78384300 | Msa0427710:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 78383384 | 78386309 | 78383384 | ID=Msa0427710;Name=Msa0427710 |
| chr3_2 | mRNA | 78383384 | 78386309 | 78383384 | ID=Msa0427710-mRNA-1;Parent=Msa0427710;Name=Msa0427710-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|6|0|477 |
| chr3_2 | exon | 78386204 | 78386309 | 78386204 | ID=Msa0427710-mRNA-1:exon:20714;Parent=Msa0427710-mRNA-1 |
| chr3_2 | exon | 78385697 | 78385930 | 78385697 | ID=Msa0427710-mRNA-1:exon:20713;Parent=Msa0427710-mRNA-1 |
| chr3_2 | exon | 78385314 | 78385407 | 78385314 | ID=Msa0427710-mRNA-1:exon:20712;Parent=Msa0427710-mRNA-1 |
| chr3_2 | exon | 78384570 | 78384784 | 78384570 | ID=Msa0427710-mRNA-1:exon:20711;Parent=Msa0427710-mRNA-1 |
| chr3_2 | exon | 78384128 | 78384267 | 78384128 | ID=Msa0427710-mRNA-1:exon:20710;Parent=Msa0427710-mRNA-1 |
| chr3_2 | exon | 78383384 | 78384028 | 78383384 | ID=Msa0427710-mRNA-1:exon:20709;Parent=Msa0427710-mRNA-1 |
| chr3_2 | CDS | 78386204 | 78386309 | 78386204 | ID=Msa0427710-mRNA-1:cds;Parent=Msa0427710-mRNA-1 |
| chr3_2 | CDS | 78385697 | 78385930 | 78385697 | ID=Msa0427710-mRNA-1:cds;Parent=Msa0427710-mRNA-1 |
| chr3_2 | CDS | 78385314 | 78385407 | 78385314 | ID=Msa0427710-mRNA-1:cds;Parent=Msa0427710-mRNA-1 |
| chr3_2 | CDS | 78384570 | 78384784 | 78384570 | ID=Msa0427710-mRNA-1:cds;Parent=Msa0427710-mRNA-1 |
| chr3_2 | CDS | 78384128 | 78384267 | 78384128 | ID=Msa0427710-mRNA-1:cds;Parent=Msa0427710-mRNA-1 |
| chr3_2 | CDS | 78383384 | 78384028 | 78383384 | ID=Msa0427710-mRNA-1:cds;Parent=Msa0427710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
