AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0437630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0437630 MtrunA17_Chr3g0105901 96.904 323 10 0 7 329 630 952 0.0 654
Msa0437630 MtrunA17_Chr5g0444511 32.258 217 109 7 4 189 427 636 1.27e-23 101
Msa0437630 MtrunA17_Chr3g0099361 29.508 244 133 8 4 215 501 737 2.99e-20 91.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0437630 AT5G58510.1 61.128 337 118 5 3 329 630 963 2.00e-137 413
Msa0437630 AT5G58510.2 61.504 226 84 2 3 228 630 852 1.96e-94 299
Msa0437630 AT5G55060.3 35.065 231 96 8 4 203 322 529 1.92e-26 110
Msa0437630 AT5G55060.2 35.065 231 96 8 4 203 322 529 1.92e-26 110
Msa0437630 AT5G55060.1 35.065 231 96 8 4 203 415 622 2.26e-26 110

Find 200 sgRNAs with CRISPR-Local

Find 1051 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAACTTTGTTCTAGGTAAA+AGG 0.153890 3_3:-1552478 Msa0437630:intron
CAAGCCTGCAAATTGGAATT+TGG 0.195936 3_3:-1552260 Msa0437630:five_prime_UTR
ATTTCACCCTTGCTTCTTCC+TGG 0.232958 3_3:-1553436 Msa0437630:five_prime_UTR
ATTAATTTGATGTTGTTTAT+TGG 0.249300 3_3:-1537963 Msa0437630:exon
TCCAATAAAACTTATGCATT+TGG 0.259281 3_3:-1551807 Msa0437630:five_prime_UTR
TTCAAGCTTGTTCCCATTGT+TGG 0.261462 3_3:+1538402 None:intergenic
GAGACAGGAACTCACAAATT+TGG 0.279202 3_3:+1551760 None:intergenic
TGTCAGCCATTTCTGTACTA+TGG 0.283856 3_3:-1545123 Msa0437630:intron
CCTTCTCGGAAAGCTTATAT+TGG 0.286136 3_3:-1551893 Msa0437630:five_prime_UTR
TCATAACAATTACCTTTAAC+AGG 0.293198 3_3:+1551014 None:intergenic
TGACCTACGTGTTGCACTTT+CGG 0.295352 3_3:-1537998 Msa0437630:CDS
TAGAGGCTGTTTGCCGGCTT+TGG 0.301802 3_3:-1552990 Msa0437630:five_prime_UTR
GAAATTTGTGGAGAAAGATT+TGG 0.305936 3_3:-1540916 Msa0437630:CDS
TCTGCAGAAGATCCTGTTAA+AGG 0.306445 3_3:-1551026 Msa0437630:intron
CATTGAGGATTTCAAATTAT+CGG 0.306833 3_3:+1549550 None:intergenic
GCAGTTCTCTTGGAGTATTC+TGG 0.306853 3_3:-1552454 Msa0437630:five_prime_UTR
TTGACAACACTTCTCTTTCA+TGG 0.308470 3_3:+1538223 None:intergenic
TTAAGTCTTTACCTGAAGTT+AGG 0.319108 3_3:+1541683 None:intergenic
AAATCCAAATTCCAATTTGC+AGG 0.320981 3_3:+1552256 None:intergenic
TTCTATGGAAATGGCTGAAC+TGG 0.322774 3_3:-1550327 Msa0437630:five_prime_UTR
TGTTTACATTCTCTTTGGTT+TGG 0.330319 3_3:-1545285 Msa0437630:five_prime_UTR
CACGATCTGCAGTTATGTTT+CGG 0.330557 3_3:-1552232 Msa0437630:five_prime_UTR
TCAGATGAATGAAGATTATC+AGG 0.342556 3_3:-1544622 Msa0437630:five_prime_UTR
AAATCTGAAGAAAATCTTAC+TGG 0.346213 3_3:-1551104 Msa0437630:five_prime_UTR
TTCCAGTTCACGATCCTTCT+CGG 0.355995 3_3:-1551907 Msa0437630:five_prime_UTR
ACGCAGGCAAGCCTGCAAAT+TGG 0.358232 3_3:-1552267 Msa0437630:five_prime_UTR
CTGAAATAGAGGCTGTTTGC+CGG 0.364549 3_3:-1552996 Msa0437630:five_prime_UTR
AGTTCACCTGTCAACTTTCC+CGG 0.366304 3_3:+1544389 None:intergenic
GAAGATGGTTGAAAGTTCTA+TGG 0.366567 3_3:-1550342 Msa0437630:five_prime_UTR
AGAAGTGGTTGATCTCTCTA+AGG 0.374421 3_3:-1550280 Msa0437630:intron
ACATCAATTGCTTGAACAAA+TGG 0.382687 3_3:-1538791 Msa0437630:CDS
TTCGAGAGGTTAGGTGGTGT+TGG 0.390276 3_3:-1545090 Msa0437630:five_prime_UTR
TTCTTCCATGTCTTCAACTT+CGG 0.394276 3_3:+1553580 None:intergenic
AGCAGATCGCATTGGTAGTC+AGG 0.397737 3_3:-1551831 Msa0437630:five_prime_UTR
AATGGGATGATGATTGTTCT+TGG 0.400326 3_3:-1551061 Msa0437630:five_prime_UTR
TTATACAGGTCCGTATCTTC+AGG 0.400955 3_3:+1543071 None:intergenic
TAACTTTGTTCTAGGTAAAA+GGG 0.401392 3_3:-1552477 Msa0437630:intron
GAAAGAAGAGGTTGTTGAAA+AGG 0.405819 3_3:-1538382 Msa0437630:intron
CTACCATGGCATCTGCTTTG+AGG 0.406678 3_3:-1538675 Msa0437630:CDS
ACTACACCACTTGCACTTTG+AGG 0.410067 3_3:+1552095 None:intergenic
CCCTTGCTTCTTCCTGGGAA+CGG 0.416166 3_3:-1553430 Msa0437630:intron
GGTGGCATTCACCTGGAGAT+TGG 0.417522 3_3:-1541057 Msa0437630:CDS
AGGTAGGATCTTCGTCTTGC+CGG 0.420190 3_3:+1553628 None:intergenic
CATCAACAAGAACATGCAAC+TGG 0.420882 3_3:+1549766 None:intergenic
GGTAAAAGGGGCAGTTCTCT+TGG 0.422286 3_3:-1552464 Msa0437630:five_prime_UTR
CTCTATCCATAGTACAGAAA+TGG 0.426739 3_3:+1545117 None:intergenic
CGATAATTTGAAATCCTCAA+TGG 0.428406 3_3:-1549549 Msa0437630:five_prime_UTR
TGGGCACTGTATTCACTAGA+AGG 0.428991 3_3:-1551859 Msa0437630:five_prime_UTR
CACAATATGGTCAGAGAAGA+TGG 0.429747 3_3:-1550357 Msa0437630:five_prime_UTR
TTGCTTTGTCGAATTGTTCA+AGG 0.435752 3_3:-1552028 Msa0437630:intron
GTGGCATTCACCTGGAGATT+GGG 0.435816 3_3:-1541056 Msa0437630:CDS
AGAGGCTTCTGTTCCGAAGC+AGG 0.442981 3_3:+1540875 None:intergenic
CTCCCACAGCTAACCAGTCT+TGG 0.443303 3_3:-1538188 Msa0437630:CDS
TTTCACCCTTGCTTCTTCCT+GGG 0.443811 3_3:-1553435 Msa0437630:five_prime_UTR
TCGAGAGGTTAGGTGGTGTT+GGG 0.444848 3_3:-1545089 Msa0437630:five_prime_UTR
ATGTTAGCTTCATTGCAATT+CGG 0.447445 3_3:+1551183 None:intergenic
GTTGGAGAAACCTGTGTGTA+CGG 0.450152 3_3:+1542957 None:intergenic
CTTCGTCTTGCCGGTGTTGG+TGG 0.450440 3_3:+1553637 None:intergenic
TGTTATGTATACAGACTTGA+AGG 0.450998 3_3:-1549819 Msa0437630:intron
GTTTATTGGTCTCAAACTCA+TGG 0.451131 3_3:-1537949 Msa0437630:three_prime_UTR
AAGTCTTCAAAAGTAGCATC+TGG 0.452459 3_3:+1541085 None:intergenic
AATAAAACTTATGCATTTGG+AGG 0.453146 3_3:-1551804 Msa0437630:five_prime_UTR
TAAGACTTCGCGATCTGTAA+AGG 0.454497 3_3:-1545340 Msa0437630:five_prime_UTR
CTCACCTGCTCTTCCTGCTT+CGG 0.456403 3_3:-1540888 Msa0437630:CDS
AAAATAAGTTGAAAGATAGT+TGG 0.461931 3_3:-1540979 Msa0437630:CDS
TTCATATAGTCCTCATCAAA+GGG 0.462254 3_3:+1551149 None:intergenic
TTCCGAGAAGGATCGTGAAC+TGG 0.464690 3_3:+1551905 None:intergenic
ACGCTAAGTCAGACTAGTTA+TGG 0.464886 3_3:-1538739 Msa0437630:CDS
AGCTAACCAGTCTTGGAGAA+AGG 0.466504 3_3:-1538181 Msa0437630:CDS
CGTGTCAGCTGCCGCTCTGA+AGG 0.468088 3_3:+1538759 None:intergenic
TAGGTTTATTTCTGAAATAG+AGG 0.471512 3_3:-1553007 Msa0437630:five_prime_UTR
GAAAAGGATATCCTAACTTC+AGG 0.473184 3_3:-1541694 Msa0437630:intron
TTTATTCGGTGGCATTCACC+TGG 0.474759 3_3:-1541064 Msa0437630:CDS
TAGAGTTTGTTCGAGAGGTT+AGG 0.477130 3_3:-1545099 Msa0437630:five_prime_UTR
ATGATTGTTCTTGGAGTGAA+TGG 0.477314 3_3:-1551052 Msa0437630:five_prime_UTR
TGCATTGCAAATGTCATTTG+AGG 0.478123 3_3:-1549745 Msa0437630:five_prime_UTR
TGATGCTGATCCACTGCTCT+CGG 0.481314 3_3:+1541018 None:intergenic
GCAGTTATGTTTCGGTGTAA+AGG 0.483595 3_3:-1552224 Msa0437630:five_prime_UTR
GGTTGAAAGTTCTATGGAAA+TGG 0.489937 3_3:-1550336 Msa0437630:five_prime_UTR
CTCAACAGTTTGCTAGCCTC+TGG 0.490161 3_3:+1552062 None:intergenic
TCAAAACCTTTCTCCAAGAC+TGG 0.491818 3_3:+1538175 None:intergenic
TGAAGGTTCTAAAGAGAGTC+GGG 0.494547 3_3:-1549802 Msa0437630:five_prime_UTR
CTGAAAGAACTGTTTATTGA+AGG 0.497176 3_3:-1549494 Msa0437630:intron
GATCTTCGTCTTGCCGGTGT+TGG 0.498167 3_3:+1553634 None:intergenic
TCATCGTCATCAGTAGAATC+AGG 0.499159 3_3:+1553608 None:intergenic
GGATCTAAACTCTGAAGAAA+AGG 0.499370 3_3:-1553799 None:intergenic
AAGACTTCGCGATCTGTAAA+GGG 0.501476 3_3:-1545339 Msa0437630:five_prime_UTR
CTCCAAGACTGGTTAGCTGT+GGG 0.501930 3_3:+1538186 None:intergenic
AAAATAATCTCCCTGAGGAT+TGG 0.503477 3_3:+1538123 None:intergenic
ATGGTCACGAACCAATCCTC+AGG 0.503857 3_3:-1538134 Msa0437630:CDS
TTGGAGAAACCTGTGTGTAC+GGG 0.509109 3_3:+1542958 None:intergenic
AATAACTAGTTACCTTGTAA+AGG 0.510806 3_3:+1538652 None:intergenic
CGTCTTGCCGGTGTTGGTGG+AGG 0.513140 3_3:+1553640 None:intergenic
CCAATATAAGCTTTCCGAGA+AGG 0.513716 3_3:+1551893 None:intergenic
TGCCGGCTTTGGATGTCTGA+TGG 0.517822 3_3:-1552979 Msa0437630:five_prime_UTR
TTTCATATAGTCCTCATCAA+AGG 0.518881 3_3:+1551148 None:intergenic
GATGCTGATCCACTGCTCTC+GGG 0.519692 3_3:+1541019 None:intergenic
TGCATGTCTTCTGTCATAAG+AGG 0.520468 3_3:+1542840 None:intergenic
TGTCGGAGCACGGAAATTTG+TGG 0.522930 3_3:-1540928 Msa0437630:CDS
TCATCTGCTTCCCAATCTCC+AGG 0.523726 3_3:+1541046 None:intergenic
TCTCCAAGACTGGTTAGCTG+TGG 0.527194 3_3:+1538185 None:intergenic
TGTTCCGAAGCAGGAAGAGC+AGG 0.527290 3_3:+1540884 None:intergenic
TCGTGAACTGGAACAAATGC+TGG 0.532806 3_3:+1551917 None:intergenic
ATAAAACTTATGCATTTGGA+GGG 0.535174 3_3:-1551803 Msa0437630:five_prime_UTR
TAACAGAAAGCCTGAAGATA+CGG 0.537971 3_3:-1543081 Msa0437630:intron
GATTAATCAAACAAGTAGAA+AGG 0.539887 3_3:+1545020 None:intergenic
GATCCGTTAGGTGCCATCCT+AGG 0.542441 3_3:+1545049 None:intergenic
AGTTTGTTCGAGAGGTTAGG+TGG 0.546050 3_3:-1545096 Msa0437630:five_prime_UTR
ACTTACAGAATGTATATATG+TGG 0.546156 3_3:-1538030 Msa0437630:CDS
GACATCAAGTGGGACACAAT+GGG 0.546476 3_3:-1551078 Msa0437630:five_prime_UTR
ATCAAACACGCACCGTTCCC+AGG 0.548121 3_3:+1553418 None:intergenic
AAGCAATTGATGTGGTCGTA+AGG 0.548145 3_3:+1538801 None:intergenic
AGCATGGGGAATCTTCTCAA+TGG 0.550107 3_3:-1538153 Msa0437630:CDS
CGAAGTCTTATTTCCCTCAT+CGG 0.551491 3_3:+1545353 None:intergenic
TCTCTATTTGGATCAAGAAG+AGG 0.552889 3_3:+1540857 None:intergenic
GAAAGGTCGATTGATCCGTT+AGG 0.553610 3_3:+1545037 None:intergenic
TTGAAGGTTCTAAAGAGAGT+CGG 0.554334 3_3:-1549803 Msa0437630:five_prime_UTR
TTATGGAGAACTGAAACAGA+TGG 0.560318 3_3:-1538722 Msa0437630:CDS
GATTTCAAATTATCGGAACC+AGG 0.560814 3_3:+1549557 None:intergenic
TTAACTAGGAGAGGTTCAGC+TGG 0.562481 3_3:-1543029 Msa0437630:five_prime_UTR
TTAGGTGCCATCCTAGGTAA+TGG 0.562654 3_3:+1545055 None:intergenic
CACCTCATGAAGCTGAGAAG+TGG 0.562932 3_3:-1550295 Msa0437630:five_prime_UTR
GGTTCTAAAGAGAGTCGGGT+TGG 0.563765 3_3:-1549798 Msa0437630:five_prime_UTR
GTATTCTGGCAATTTGTACA+AGG 0.564368 3_3:-1552440 Msa0437630:five_prime_UTR
GTCACAACCATTACCTAGGA+TGG 0.564747 3_3:-1545062 Msa0437630:five_prime_UTR
TCTTCAGACTTAACTAGGAG+AGG 0.564818 3_3:-1543038 Msa0437630:five_prime_UTR
AGCTTGCAATATGCATTGAG+AGG 0.566158 3_3:-1544650 Msa0437630:five_prime_UTR
ATGGTATGTGACCTCAGTCA+TGG 0.568093 3_3:+1544569 None:intergenic
ACCGTTCCCAGGAAGAAGCA+AGG 0.568748 3_3:+1553429 None:intergenic
TCTGCTTTGAGGCCTTTACA+AGG 0.569006 3_3:-1538664 Msa0437630:intron
CCTGTGGCAGCTGAAAATCC+TGG 0.569270 3_3:-1549575 Msa0437630:intron
GAAGATTATCAGGACTGTAT+CGG 0.570921 3_3:-1544612 Msa0437630:five_prime_UTR
GCGTCATCCTCCACCAACAC+CGG 0.572918 3_3:-1553647 Msa0437630:five_prime_UTR
CTTCTTGATCCAAATAGAGA+AGG 0.574853 3_3:-1540854 Msa0437630:CDS
ATGGATAGAGTTTGTTCGAG+AGG 0.575339 3_3:-1545104 Msa0437630:five_prime_UTR
GACCATCAGACATCCAAAGC+CGG 0.576876 3_3:+1552977 None:intergenic
AACTTTGTTCTAGGTAAAAG+GGG 0.577221 3_3:-1552476 Msa0437630:intron
TTGACAAGAAACAAGCGGTA+AGG 0.577648 3_3:-1538248 Msa0437630:CDS
TATATTGGAATTCAGAGCAT+GGG 0.581759 3_3:-1551878 Msa0437630:five_prime_UTR
ATGCAAGCTGTTGAAGCCAT+TGG 0.583161 3_3:-1542807 Msa0437630:five_prime_UTR
AGACATCAAGTGGGACACAA+TGG 0.587373 3_3:-1551079 Msa0437630:five_prime_UTR
TAAATTGCAGGAAGAAAGTG+TGG 0.587545 3_3:-1544457 Msa0437630:intron
GATTAATCAGAAACTTCAGA+TGG 0.588476 3_3:-1545005 Msa0437630:intron
CCGTTCCCAGGAAGAAGCAA+GGG 0.590595 3_3:+1553430 None:intergenic
CGGTGAAGGTATAACCATTG+AGG 0.591681 3_3:+1549535 None:intergenic
AAAATTTCTCTTGAGAGCCG+TGG 0.592922 3_3:+1538450 None:intergenic
CGATCATATCTGAGATTCGA+TGG 0.594175 3_3:-1553669 Msa0437630:five_prime_UTR
TGCCTTGAAAACTTACAGCA+TGG 0.601892 3_3:-1552398 Msa0437630:five_prime_UTR
GCTTACAAATGAATCACCAA+TGG 0.602069 3_3:+1542791 None:intergenic
TTGCAGGAAGAAAGTGTGGT+TGG 0.609382 3_3:-1544453 Msa0437630:intron
CAGAACACTCCCCTTTGATG+AGG 0.609705 3_3:-1551159 Msa0437630:five_prime_UTR
GATGATGATCCCGAGAGCAG+TGG 0.609855 3_3:-1541028 Msa0437630:CDS
ATTTGTTCAAGCAATTGATG+TGG 0.610015 3_3:+1538793 None:intergenic
TCGCTCCACGATAGAGTGAG+TGG 0.610435 3_3:-1538099 Msa0437630:CDS
CGTCATCAGTAGAATCAGGT+AGG 0.610831 3_3:+1553612 None:intergenic
ATCAACAAGAACATGCAACT+GGG 0.611174 3_3:+1549767 None:intergenic
TCTAAGAGAATGTCGGAGCA+CGG 0.611994 3_3:-1540938 Msa0437630:CDS
TCAACAACTTTATCCTACCA+TGG 0.615005 3_3:-1538689 Msa0437630:CDS
AGGTTTGAAGCAGATCGCAT+TGG 0.616256 3_3:-1551839 Msa0437630:five_prime_UTR
AGGCCTCAAAGCAGATGCCA+TGG 0.616368 3_3:+1538672 None:intergenic
GGGAACAAGCTTGAAAGAAG+AGG 0.617875 3_3:-1538394 Msa0437630:CDS
AACCACTTCTCAGCTTCATG+AGG 0.619960 3_3:+1550293 None:intergenic
TAAAACTTATGCATTTGGAG+GGG 0.620059 3_3:-1551802 Msa0437630:five_prime_UTR
CTTACTGGTGAGACATCAAG+TGG 0.628857 3_3:-1551089 Msa0437630:five_prime_UTR
ACTGAAGGCATACTCCACAT+TGG 0.630062 3_3:-1551231 Msa0437630:intron
CAAGACTGGTTAGCTGTGGG+AGG 0.632334 3_3:+1538189 None:intergenic
CAGAAGACATGCATGAAGAG+AGG 0.632667 3_3:-1542830 Msa0437630:five_prime_UTR
AGCACACGATCTCTAACAGT+CGG 0.633362 3_3:+1549515 None:intergenic
CGATCTCTAACAGTCGGTGA+AGG 0.634551 3_3:+1549521 None:intergenic
TTATATTGGAATTCAGAGCA+TGG 0.634913 3_3:-1551879 Msa0437630:five_prime_UTR
TCAATTGCTTGAACAAATGG+TGG 0.635113 3_3:-1538788 Msa0437630:CDS
ATGTCTTCTGTCATAAGAGG+TGG 0.637142 3_3:+1542843 None:intergenic
TTACCTAGGATGGCACCTAA+CGG 0.641363 3_3:-1545052 Msa0437630:five_prime_UTR
AAGAGTCACAACCATTACCT+AGG 0.642195 3_3:-1545066 Msa0437630:five_prime_UTR
CTCTTAGAAAGCTTCCCACG+TGG 0.649641 3_3:+1540953 None:intergenic
ACACACCGAAGTTGAAGACA+TGG 0.655155 3_3:-1553585 Msa0437630:five_prime_UTR
TGGTCACGAACCAATCCTCA+GGG 0.656438 3_3:-1538133 Msa0437630:CDS
GAAGCTTTCTAAGAGAATGT+CGG 0.656881 3_3:-1540945 Msa0437630:CDS
TTAGAAAGCTTCCCACGTGG+AGG 0.657047 3_3:+1540956 None:intergenic
CTCAAAGCAGATGCCATGGT+AGG 0.657425 3_3:+1538676 None:intergenic
ATTGCTCCTCAAAGTGCAAG+TGG 0.659519 3_3:-1552101 Msa0437630:five_prime_UTR
TGTAGTTCTTGATGCACCAG+AGG 0.663468 3_3:-1552078 Msa0437630:five_prime_UTR
GATTACCACTCACTCTATCG+TGG 0.664886 3_3:+1538094 None:intergenic
TGTGCAAAGAGTGACTCAAG+AGG 0.665633 3_3:+1545312 None:intergenic
GGAATTTGACAAGAAACAAG+CGG 0.666341 3_3:-1538253 Msa0437630:CDS
AAGATAGTTGGCCTCCACGT+GGG 0.666641 3_3:-1540967 Msa0437630:CDS
TCTTGGCATCCAGATGACGC+AGG 0.676543 3_3:-1552283 Msa0437630:intron
TATGCATGCCCCGTACACAC+AGG 0.679486 3_3:-1542967 Msa0437630:intron
AAAGATAGTTGGCCTCCACG+TGG 0.680840 3_3:-1540968 Msa0437630:CDS
TCATATAGATTCCATGACTG+AGG 0.684894 3_3:-1544580 Msa0437630:intron
TGGAGAAACCTGTGTGTACG+GGG 0.686734 3_3:+1542959 None:intergenic
TCATATAGTCCTCATCAAAG+GGG 0.695091 3_3:+1551150 None:intergenic
AACAAGAACATGCAACTGGG+AGG 0.696166 3_3:+1549770 None:intergenic
ATGAACAGATAGATCCAATG+TGG 0.712050 3_3:+1551217 None:intergenic
TTTGGCAACTGCAATATACG+TGG 0.718773 3_3:-1545267 Msa0437630:intron
AATCACTATGCAGCTCGTAG+CGG 0.731948 3_3:-1538075 Msa0437630:CDS
CAACCGAAAGTGCAACACGT+AGG 0.757533 3_3:+1537995 None:intergenic
TTACTGGTGAGACATCAAGT+GGG 0.765914 3_3:-1551088 Msa0437630:five_prime_UTR
GCAAGCTTATACGAGCACCA+CGG 0.771138 3_3:-1538467 Msa0437630:CDS
GGTGGCTACTGCCTTCAGAG+CGG 0.783574 3_3:-1538770 Msa0437630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTTGATTGTTTAAATT+CGG + chr3_3:1539122-1539141 None:intergenic 10.0%
!!! TATATTTTTTAAATCTATCT+TGG - chr3_3:1539407-1539426 Msa0437630:intron 10.0%
!! AATGAATTATTATATATTAC+TGG - chr3_3:1540173-1540192 Msa0437630:intron 10.0%
!! ATGAATTATTATATATTACT+GGG - chr3_3:1540174-1540193 Msa0437630:intron 10.0%
!! ATAATATAAAGAATTCAAAT+TGG + chr3_3:1541868-1541887 None:intergenic 10.0%
!!! TTATATTTTGTCTTTAATTT+TGG - chr3_3:1542255-1542274 Msa0437630:intron 10.0%
!!! TATATTTTGTCTTTAATTTT+GGG - chr3_3:1542256-1542275 Msa0437630:intron 10.0%
!!! AAGTGAAATATAAATTATTT+TGG - chr3_3:1542416-1542435 Msa0437630:intron 10.0%
!!! AAAATATATGTTTTACTTTT+TGG + chr3_3:1542451-1542470 None:intergenic 10.0%
!!! AAGTAAAACATATATTTTTT+TGG - chr3_3:1542453-1542472 Msa0437630:intron 10.0%
!! TATATTTAACCATATTATAT+TGG - chr3_3:1543800-1543819 Msa0437630:intron 10.0%
!! ATATTTAACCATATTATATT+GGG - chr3_3:1543801-1543820 Msa0437630:intron 10.0%
!!! AAAATAATTTTTTGTTATGT+GGG + chr3_3:1543922-1543941 None:intergenic 10.0%
!!! AAAAATAATTTTTTGTTATG+TGG + chr3_3:1543923-1543942 None:intergenic 10.0%
!!! AAAAATATTTTTTTGTTATG+TGG - chr3_3:1544556-1544575 Msa0437630:intron 10.0%
!!! AAAATATTTTTTTGTTATGT+GGG - chr3_3:1544557-1544576 Msa0437630:intron 10.0%
!! TCAATAAAATATTATACTAA+TGG + chr3_3:1544717-1544736 None:intergenic 10.0%
!!! ACATTTTCTAAAATTTATAT+TGG - chr3_3:1544864-1544883 Msa0437630:intron 10.0%
!!! CATTTTCTAAAATTTATATT+GGG - chr3_3:1544865-1544884 Msa0437630:intron 10.0%
!! AAATAATAAATAATAAAGAG+AGG - chr3_3:1545867-1545886 Msa0437630:intron 10.0%
!! ATATAATTAAAAGGATAATT+TGG - chr3_3:1546033-1546052 Msa0437630:intron 10.0%
!! TAATTAAAATGATATATTTC+AGG - chr3_3:1548346-1548365 Msa0437630:intron 10.0%
!! AAATATTAAAGTGAAATAAA+GGG + chr3_3:1549683-1549702 None:intergenic 10.0%
!! TAAATATTAAAGTGAAATAA+AGG + chr3_3:1549684-1549703 None:intergenic 10.0%
!!! CATATATCATATTTTAAATT+AGG - chr3_3:1549952-1549971 Msa0437630:intron 10.0%
!!! ATAGTAAAAGAATTTTTTAT+TGG + chr3_3:1552132-1552151 None:intergenic 10.0%
!!! CTATTGATTTTAAAATTTTA+AGG - chr3_3:1552148-1552167 Msa0437630:intron 10.0%
!!! TTAAAATTTTAAGGATTTTA+TGG - chr3_3:1552157-1552176 Msa0437630:intron 10.0%
!!! TTTTTTTTAAAGATTTGTAA+GGG + chr3_3:1552305-1552324 None:intergenic 10.0%
!!! TTTTTTTTTAAAGATTTGTA+AGG + chr3_3:1552306-1552325 None:intergenic 10.0%
!! AATTGAGAATATAAATATTA+GGG + chr3_3:1552861-1552880 None:intergenic 10.0%
!! AAATTGAGAATATAAATATT+AGG + chr3_3:1552862-1552881 None:intergenic 10.0%
!!! AAATGATTATGAAACTTTTT+TGG + chr3_3:1537959-1537978 None:intergenic 15.0%
!!! TAGTTAGTTCATATTTTTAT+AGG - chr3_3:1538362-1538381 Msa0437630:intron 15.0%
!!! TTAAATTACTTTAGTTTAGA+TGG - chr3_3:1538613-1538632 Msa0437630:intron 15.0%
!! ATAATAAAAAATTACCAGAA+GGG + chr3_3:1539354-1539373 None:intergenic 15.0%
!!! AATTTTTTATTATGGTTAGT+AGG - chr3_3:1539361-1539380 Msa0437630:intron 15.0%
!! TGAATTATTATATATTACTG+GGG - chr3_3:1540175-1540194 Msa0437630:intron 15.0%
!! AATCAATATTTAGAAAATAG+AGG - chr3_3:1541087-1541106 Msa0437630:CDS 15.0%
!!! TTAGTATAACTATTCAATTT+TGG - chr3_3:1542079-1542098 Msa0437630:intron 15.0%
!! AATTAAAGACAAAATATAAG+AGG + chr3_3:1542254-1542273 None:intergenic 15.0%
!!! ATATAAATTATTTTGGTTTG+AGG - chr3_3:1542423-1542442 Msa0437630:intron 15.0%
!!! ATTTAAAATGAAAAATTCCT+GGG + chr3_3:1542694-1542713 None:intergenic 15.0%
!!! AATTTAAAATGAAAAATTCC+TGG + chr3_3:1542695-1542714 None:intergenic 15.0%
!! GAAAAAGGATTAATTATTTA+TGG + chr3_3:1542719-1542738 None:intergenic 15.0%
!! TGAAAAAATGTTTATAAATG+TGG + chr3_3:1543105-1543124 None:intergenic 15.0%
!!! AAAAGTAAATTTTTCTCATA+AGG + chr3_3:1544301-1544320 None:intergenic 15.0%
!! GTAGAAAAGATAATATAATA+GGG + chr3_3:1544679-1544698 None:intergenic 15.0%
!! TGTAGAAAAGATAATATAAT+AGG + chr3_3:1544680-1544699 None:intergenic 15.0%
!!! GTTTCAAGTTTAATTTATTA+TGG + chr3_3:1545542-1545561 None:intergenic 15.0%
!!! TAATTTATTTTTTTCATGCA+CGG - chr3_3:1546725-1546744 Msa0437630:intron 15.0%
!! ATTTCTATATTATTGTAAAC+TGG - chr3_3:1547220-1547239 Msa0437630:intron 15.0%
!! TATAGTTTCTCATAAAATAT+GGG - chr3_3:1547491-1547510 Msa0437630:intron 15.0%
!! ATAAAAATGAACAAAAGAAT+GGG + chr3_3:1548258-1548277 None:intergenic 15.0%
!! AAGATTATCTCATTAAAAAA+AGG + chr3_3:1550081-1550100 None:intergenic 15.0%
!! TTTCTAATATTTAATGAGTA+TGG + chr3_3:1550249-1550268 None:intergenic 15.0%
!!! TTATGTATGTAAATTTTTGT+AGG - chr3_3:1550293-1550312 Msa0437630:five_prime_UTR 15.0%
!!! TAAAGTACAAATAGTTTTTA+AGG - chr3_3:1550328-1550347 Msa0437630:five_prime_UTR 15.0%
!!! AAAGTACAAATAGTTTTTAA+GGG - chr3_3:1550329-1550348 Msa0437630:five_prime_UTR 15.0%
!! ATTTATATGGTATAACAATA+TGG + chr3_3:1550939-1550958 None:intergenic 15.0%
!! ATATAAATTTCAAACAATGA+GGG - chr3_3:1550951-1550970 Msa0437630:intron 15.0%
!!! GAGAAACTTAAATTATTTTA+AGG + chr3_3:1551175-1551194 None:intergenic 15.0%
!!! AATCAAATTAAATTTTACCA+TGG + chr3_3:1551454-1551473 None:intergenic 15.0%
!!! TTAATTTGATTATGAACTTA+TGG - chr3_3:1551463-1551482 Msa0437630:intron 15.0%
!!! ATGGGATTTTAAAATTTTAA+AGG - chr3_3:1552007-1552026 Msa0437630:intron 15.0%
!!! ATGGATTTTATAAGATTTTA+AGG - chr3_3:1552176-1552195 Msa0437630:intron 15.0%
!!! TGGATTTTATAAGATTTTAA+GGG - chr3_3:1552177-1552196 Msa0437630:intron 15.0%
!! TAACAAATAAAAAATGTGTA+TGG + chr3_3:1552232-1552251 None:intergenic 15.0%
!!! TTTAATAAATTGGATTTTGA+TGG + chr3_3:1552616-1552635 None:intergenic 15.0%
!! ATTGAGAATATAAATATTAG+GGG + chr3_3:1552860-1552879 None:intergenic 15.0%
!!! ATTAATTTGATGTTGTTTAT+TGG - chr3_3:1553744-1553763 Msa0437630:five_prime_UTR 15.0%
!!! TCATGGTTTTAATAATTTTA+AGG - chr3_3:1553775-1553794 Msa0437630:five_prime_UTR 15.0%
!!! TGTTCTTTAGTTAGTTTATT+CGG - chr3_3:1538452-1538471 Msa0437630:CDS 20.0%
!! TTGATTAAATAAGTTCAGTT+TGG - chr3_3:1538492-1538511 Msa0437630:CDS 20.0%
!!! GTTGTTAATTGTTTTTTTGT+AGG - chr3_3:1538681-1538700 Msa0437630:CDS 20.0%
!!! ATGCTTACCATTAAATTTTT+TGG + chr3_3:1538755-1538774 None:intergenic 20.0%
!! AGTACAAAATGTTATCAAAT+AGG - chr3_3:1539064-1539083 Msa0437630:intron 20.0%
!!! AATTTTATGCCATTTCTTTT+TGG - chr3_3:1539189-1539208 Msa0437630:intron 20.0%
!! CATAATAAAAAATTACCAGA+AGG + chr3_3:1539355-1539374 None:intergenic 20.0%
!!! CTTCTGGTAATTTTTTATTA+TGG - chr3_3:1539353-1539372 Msa0437630:intron 20.0%
!!! AAATTTCATTGATTTCACTA+AGG - chr3_3:1539547-1539566 Msa0437630:intron 20.0%
!!! TTACTATTTTCTCATAACTT+TGG - chr3_3:1539752-1539771 Msa0437630:intron 20.0%
!!! TTCATTTAATTTTATGACGT+TGG - chr3_3:1539988-1540007 Msa0437630:intron 20.0%
!!! ATTTTTCCTTTTCTATATTC+TGG - chr3_3:1540288-1540307 Msa0437630:intron 20.0%
!! AAAGGTAATTGTTATGATAA+AGG - chr3_3:1540699-1540718 Msa0437630:intron 20.0%
!! CAACTTATCCATAAATTAAA+TGG + chr3_3:1541310-1541329 None:intergenic 20.0%
!! ATAACACTTGTAAATTGTAA+TGG - chr3_3:1541672-1541691 Msa0437630:intron 20.0%
!! TTAAATCGTGATATTATACA+AGG + chr3_3:1541766-1541785 None:intergenic 20.0%
!!! AAAAAGCATCAATAGTTTAA+TGG - chr3_3:1541785-1541804 Msa0437630:intron 20.0%
!!! TTTATAGAAGATTTTGTTTC+AGG - chr3_3:1541990-1542009 Msa0437630:intron 20.0%
!! ATACTAACTAAGAAACATAA+AGG + chr3_3:1542066-1542085 None:intergenic 20.0%
!! CAGATTTATTGAACATATAT+AGG + chr3_3:1542354-1542373 None:intergenic 20.0%
!! TTAATTCAATCCTACAAAAT+TGG - chr3_3:1542571-1542590 Msa0437630:intron 20.0%
!! TATTTACTTGAAACAGAAAA+AGG + chr3_3:1542734-1542753 None:intergenic 20.0%
!!! TGTTTCAAGTAAATACTATA+AGG - chr3_3:1542739-1542758 Msa0437630:intron 20.0%
!! TAAAAAATACCTATGTTCTT+AGG + chr3_3:1543013-1543032 None:intergenic 20.0%
!!! AAGAAGTATTTATAAGTAGT+AGG + chr3_3:1543321-1543340 None:intergenic 20.0%
!! TACTTATAAATACTTCTTTC+AGG - chr3_3:1543323-1543342 Msa0437630:intron 20.0%
!! TTTCCAATACAAATAAAAGA+GGG - chr3_3:1543496-1543515 Msa0437630:intron 20.0%
!!! TTTAAGGTTTTATGATATGA+TGG + chr3_3:1544136-1544155 None:intergenic 20.0%
!!! AAATGGGTTTATAAGATTTA+AGG + chr3_3:1544152-1544171 None:intergenic 20.0%
!!! CATATTCAATTTTTTCTTCA+CGG - chr3_3:1544456-1544475 Msa0437630:intron 20.0%
!! ACATGTAAACAAAAATAAAC+TGG - chr3_3:1545034-1545053 Msa0437630:five_prime_UTR 20.0%
!! CATGTAAACAAAAATAAACT+GGG - chr3_3:1545035-1545054 Msa0437630:five_prime_UTR 20.0%
!!! TTTTAATGTGATAAAGGAAA+GGG + chr3_3:1545084-1545103 None:intergenic 20.0%
!!! CTTATGTTTTAATGTGATAA+AGG + chr3_3:1545090-1545109 None:intergenic 20.0%
!! CTTTATCACATTAAAACATA+AGG - chr3_3:1545088-1545107 Msa0437630:five_prime_UTR 20.0%
!! AAACTAAAATCAGAATTGAA+GGG - chr3_3:1545709-1545728 Msa0437630:intron 20.0%
!!! AATGTGAATTGATTTATGTT+TGG + chr3_3:1546140-1546159 None:intergenic 20.0%
!!! AATTTTGTTTACATTCTCTT+TGG - chr3_3:1546417-1546436 Msa0437630:intron 20.0%
!! CTAAAATCAAAAGGAAAAAA+TGG + chr3_3:1547160-1547179 None:intergenic 20.0%
!! CTATAGTTTCTCATAAAATA+TGG - chr3_3:1547490-1547509 Msa0437630:intron 20.0%
!! AATTAGTGGTTATAAATGAT+GGG + chr3_3:1547565-1547584 None:intergenic 20.0%
!! AAATTAGTGGTTATAAATGA+TGG + chr3_3:1547566-1547585 None:intergenic 20.0%
!! ATCATTTATAACCACTAATT+TGG - chr3_3:1547565-1547584 Msa0437630:intron 20.0%
!! AACTTTCAATTCTCTAATAT+GGG - chr3_3:1547774-1547793 Msa0437630:intron 20.0%
!! AATAAATTTGGTTAAATTCG+AGG + chr3_3:1548097-1548116 None:intergenic 20.0%
!! TAAAAATGAACAAAAGAATG+GGG + chr3_3:1548257-1548276 None:intergenic 20.0%
!! GATAAAAATGAACAAAAGAA+TGG + chr3_3:1548259-1548278 None:intergenic 20.0%
!! AAATTTATAGAGCAGAATTT+AGG - chr3_3:1548279-1548298 Msa0437630:intron 20.0%
!!! AAGATTTTTTGTCTTTATAC+AGG + chr3_3:1548653-1548672 None:intergenic 20.0%
!! TTTAATATCAATTAACTGCT+TGG + chr3_3:1549077-1549096 None:intergenic 20.0%
!! GCAGTTAATTGATATTAAAT+CGG - chr3_3:1549078-1549097 Msa0437630:intron 20.0%
!! ATTACAAAATGTTAACTCAA+TGG + chr3_3:1549288-1549307 None:intergenic 20.0%
!! ACATAAACATAACACTATAT+AGG + chr3_3:1549654-1549673 None:intergenic 20.0%
!! ATGATCAACCAAATTAAAAT+GGG + chr3_3:1549865-1549884 None:intergenic 20.0%
!! AATGATCAACCAAATTAAAA+TGG + chr3_3:1549866-1549885 None:intergenic 20.0%
!! AGAAAAATTCTGTAGAAAAA+AGG + chr3_3:1549984-1550003 None:intergenic 20.0%
!!! TATAAACTATGAAGCATTAA+GGG + chr3_3:1550509-1550528 None:intergenic 20.0%
!!! ATTATAGTATTGAACAATGT+TGG + chr3_3:1550539-1550558 None:intergenic 20.0%
!!! AAAATAAGTTGAAAGATAGT+TGG - chr3_3:1550728-1550747 Msa0437630:intron 20.0%
!!! CTCATTGTTTGAAATTTATA+TGG + chr3_3:1550952-1550971 None:intergenic 20.0%
!! CATATAAATTTCAAACAATG+AGG - chr3_3:1550950-1550969 Msa0437630:intron 20.0%
!! ATGAATTTAACTGCTATAAT+TGG + chr3_3:1550990-1551009 None:intergenic 20.0%
!! AATTATAGCAGTTAAATTCA+TGG - chr3_3:1550989-1551008 Msa0437630:intron 20.0%
!! AATTCATGGTTATTAAATCA+AGG - chr3_3:1551003-1551022 Msa0437630:intron 20.0%
!! ATTCTATTGAAACAATACAT+AGG + chr3_3:1551277-1551296 None:intergenic 20.0%
!!! TTATACACTCAAGATTTTAA+TGG - chr3_3:1551946-1551965 Msa0437630:intron 20.0%
!!! TAAAGGATTCAATGAATTTT+AGG - chr3_3:1552024-1552043 Msa0437630:intron 20.0%
!!! AAAGGATTCAATGAATTTTA+GGG - chr3_3:1552025-1552044 Msa0437630:intron 20.0%
!!! TATGTACAATTGAATTTTGT+GGG + chr3_3:1552266-1552285 None:intergenic 20.0%
!!! ATATGTACAATTGAATTTTG+TGG + chr3_3:1552267-1552286 None:intergenic 20.0%
!! TAATTTCAAACACAAAATGA+GGG + chr3_3:1552346-1552365 None:intergenic 20.0%
!! TTAATTATGAAAAAGTCTTG+TGG + chr3_3:1552796-1552815 None:intergenic 20.0%
!! TTGAGAATATAAATATTAGG+GGG + chr3_3:1552859-1552878 None:intergenic 20.0%
!!! ATTTATATTCTCAATTTTCC+AGG - chr3_3:1552865-1552884 Msa0437630:intron 20.0%
!!! AACTTTTATATTCCAACAAT+GGG - chr3_3:1553293-1553312 Msa0437630:intron 20.0%
! AATCAGAATCATAATTCGAT+TGG + chr3_3:1538179-1538198 None:intergenic 25.0%
! TTAAATAAGTTCAGTTTGGA+TGG - chr3_3:1538496-1538515 Msa0437630:CDS 25.0%
! CAGAATACAACAATATGAAT+CGG + chr3_3:1538581-1538600 None:intergenic 25.0%
!!! TAGGTTTATTTCTGAAATAG+AGG - chr3_3:1538700-1538719 Msa0437630:CDS 25.0%
! TGATGGTCCAAAAAATTTAA+TGG - chr3_3:1538745-1538764 Msa0437630:CDS 25.0%
! AATTTCGTATATTGAAATGC+TGG - chr3_3:1538787-1538806 Msa0437630:CDS 25.0%
! CATATTTGTAAATTGTGATG+CGG - chr3_3:1538840-1538859 Msa0437630:intron 25.0%
!! TAACTTTGTTCTAGGTAAAA+GGG - chr3_3:1539230-1539249 Msa0437630:intron 25.0%
! TCCAATAAAACTTATGCATT+TGG - chr3_3:1539900-1539919 Msa0437630:intron 25.0%
!!! TCCAAATGCATAAGTTTTAT+TGG + chr3_3:1539904-1539923 None:intergenic 25.0%
! AATAAAACTTATGCATTTGG+AGG - chr3_3:1539903-1539922 Msa0437630:intron 25.0%
! ATAAAACTTATGCATTTGGA+GGG - chr3_3:1539904-1539923 Msa0437630:intron 25.0%
! TAAATTAAACAACAAGAGAC+AGG + chr3_3:1539965-1539984 None:intergenic 25.0%
! TTGTAAAAGAAAGCAAAGTA+TGG + chr3_3:1540059-1540078 None:intergenic 25.0%
!!! GCAACAGTTTTCTATTTTTT+TGG - chr3_3:1540211-1540230 Msa0437630:intron 25.0%
! AGAATCCAAGAAACATATTT+GGG + chr3_3:1540323-1540342 None:intergenic 25.0%
! AAGAATCCAAGAAACATATT+TGG + chr3_3:1540324-1540343 None:intergenic 25.0%
!!! ATAAATTATTAGGTTGAGGT+AGG + chr3_3:1540366-1540385 None:intergenic 25.0%
!! TAGCATAAATTATTAGGTTG+AGG + chr3_3:1540370-1540389 None:intergenic 25.0%
! ATCAAATGGAAATTAGTTAC+AGG + chr3_3:1540456-1540475 None:intergenic 25.0%
! TAATTTCCATTTGATACTGA+AGG - chr3_3:1540461-1540480 Msa0437630:intron 25.0%
! AAATCTGAAGAAAATCTTAC+TGG - chr3_3:1540603-1540622 Msa0437630:intron 25.0%
! TCATAACAATTACCTTTAAC+AGG + chr3_3:1540696-1540715 None:intergenic 25.0%
! TCACAAAATACACATTCTAT+TGG + chr3_3:1540782-1540801 None:intergenic 25.0%
! TTATGAAGTTATTGAGGAAA+GGG - chr3_3:1540805-1540824 Msa0437630:intron 25.0%
!! TTTGTCATACAAAGCATTAA+GGG + chr3_3:1540854-1540873 None:intergenic 25.0%
! GCATGGATGAAAAATAAAAT+AGG + chr3_3:1540900-1540919 None:intergenic 25.0%
!! AAAGAGACAAACAAAAGTAT+AGG + chr3_3:1541171-1541190 None:intergenic 25.0%
!! TTTAATACTTGGGACATTTT+TGG - chr3_3:1541201-1541220 Msa0437630:intron 25.0%
! TCCATAAATTAAATGGAACT+GGG + chr3_3:1541303-1541322 None:intergenic 25.0%
! ATCCATAAATTAAATGGAAC+TGG + chr3_3:1541304-1541323 None:intergenic 25.0%
! CTGATGAAAATGAAATTTCT+GGG + chr3_3:1541635-1541654 None:intergenic 25.0%
! ACTGATGAAAATGAAATTTC+TGG + chr3_3:1541636-1541655 None:intergenic 25.0%
! ACTTGTAAATTGTAATGGTT+AGG - chr3_3:1541677-1541696 Msa0437630:intron 25.0%
!!! TCTTTAAAAGCTTTTACTGA+GGG - chr3_3:1541739-1541758 Msa0437630:intron 25.0%
! AAAGAATTCAAATTGGTTAC+CGG + chr3_3:1541861-1541880 None:intergenic 25.0%
!!! TTTCAGGTTCAAATTTGTTT+TGG - chr3_3:1542006-1542025 Msa0437630:intron 25.0%
! CATTGAGGATTTCAAATTAT+CGG + chr3_3:1542160-1542179 None:intergenic 25.0%
!!! ATTGAAGGTACATAGATTTT+CGG - chr3_3:1542228-1542247 Msa0437630:intron 25.0%
! TTATATTTCACTTCACTCTT+TGG + chr3_3:1542409-1542428 None:intergenic 25.0%
!!! ACATATATTTTTTTGGACAG+TGG - chr3_3:1542460-1542479 Msa0437630:intron 25.0%
!!! TTGGTTACTCTTTAGAATTT+AGG - chr3_3:1542542-1542561 Msa0437630:intron 25.0%
! TATCTATTTCCTAAGAACAT+AGG - chr3_3:1543001-1543020 Msa0437630:five_prime_UTR 25.0%
! GAGATTACAAATATATAGCT+GGG + chr3_3:1543051-1543070 None:intergenic 25.0%
! AGAGATTACAAATATATAGC+TGG + chr3_3:1543052-1543071 None:intergenic 25.0%
! CTTTCCAATACAAATAAAAG+AGG - chr3_3:1543495-1543514 Msa0437630:intron 25.0%
! TTCCAATACAAATAAAAGAG+GGG - chr3_3:1543497-1543516 Msa0437630:intron 25.0%
! TACAGATATTAGTGAAACTT+AGG - chr3_3:1543538-1543557 Msa0437630:intron 25.0%
!!! TGGTTTTATATTTGATGGTT+AGG - chr3_3:1543569-1543588 Msa0437630:intron 25.0%
! TAAAAATAGGGACCATATTA+GGG + chr3_3:1544650-1544669 None:intergenic 25.0%
! ATAAAAATAGGGACCATATT+AGG + chr3_3:1543831-1543850 None:intergenic 25.0%
!!! TAATATGGTCCCTATTTTTA+TGG - chr3_3:1543830-1543849 Msa0437630:intron 25.0%
! CACAAACAAAAAATGTTTCA+TGG - chr3_3:1543895-1543914 Msa0437630:intron 25.0%
!!! GAATTTTTGGCTTATACTAA+GGG + chr3_3:1543976-1543995 None:intergenic 25.0%
!!! AGAATTTTTGGCTTATACTA+AGG + chr3_3:1543977-1543996 None:intergenic 25.0%
! GATAAAGGAGGAAAATAAAT+GGG + chr3_3:1544168-1544187 None:intergenic 25.0%
! AGATAAAGGAGGAAAATAAA+TGG + chr3_3:1544169-1544188 None:intergenic 25.0%
! GAAAAAATTGAATATGGATG+AGG + chr3_3:1544452-1544471 None:intergenic 25.0%
! CGTGAAGAAAAAATTGAATA+TGG + chr3_3:1544458-1544477 None:intergenic 25.0%
! CACAAAAAAAAATTGTTGCA+TGG + chr3_3:1544584-1544603 None:intergenic 25.0%
!!! AATATGGTCCCTATTTTTAA+GGG + chr3_3:1544649-1544668 None:intergenic 25.0%
!!! TAATATGGTCCCTATTTTTA+AGG + chr3_3:1543830-1543849 None:intergenic 25.0%
! TTAAAAATAGGGACCATATT+AGG - chr3_3:1544649-1544668 Msa0437630:five_prime_UTR 25.0%
! TAAAAATAGGGACCATATTA+GGG - chr3_3:1544650-1544669 Msa0437630:five_prime_UTR 25.0%
!!! AATTTTAGAAAATGTCACAC+AGG + chr3_3:1544859-1544878 None:intergenic 25.0%
!! TGGTATTCTATTTAAGTTAG+AGG + chr3_3:1544897-1544916 None:intergenic 25.0%
!! ACTATTTTCTTGTTCTTGAA+AGG - chr3_3:1544993-1545012 Msa0437630:intron 25.0%
!!! GTTTTAATGTGATAAAGGAA+AGG + chr3_3:1545085-1545104 None:intergenic 25.0%
! TTCAAAATTATTCACTAAGC+AGG + chr3_3:1545125-1545144 None:intergenic 25.0%
!! TTTTGAATTTCATGTTTCCT+TGG - chr3_3:1545138-1545157 Msa0437630:intron 25.0%
! TGAAGAAGAAAGATGTTTAT+GGG + chr3_3:1545424-1545443 None:intergenic 25.0%
! ATGAAGAAGAAAGATGTTTA+TGG + chr3_3:1545425-1545444 None:intergenic 25.0%
! ATAACAGATCTGTAATTAGA+GGG + chr3_3:1545477-1545496 None:intergenic 25.0%
! TATAACAGATCTGTAATTAG+AGG + chr3_3:1545478-1545497 None:intergenic 25.0%
! TATTGGAGAAAAATGAAAGT+AGG - chr3_3:1545609-1545628 Msa0437630:intron 25.0%
! CAAACTAAAATCAGAATTGA+AGG - chr3_3:1545708-1545727 Msa0437630:intron 25.0%
!! AATTTGTTCAATTTCATGGA+TGG + chr3_3:1545749-1545768 None:intergenic 25.0%
!! TCTCAATTTGTTCAATTTCA+TGG + chr3_3:1545753-1545772 None:intergenic 25.0%
! TGAAATTGAACAAATTGAGA+TGG - chr3_3:1545753-1545772 Msa0437630:intron 25.0%
!!! GATTTTGAGAGAATTGATTT+TGG + chr3_3:1546177-1546196 None:intergenic 25.0%
!!! ATATTTTGCTGGTTAGAATT+CGG - chr3_3:1546261-1546280 Msa0437630:intron 25.0%
! GATTAATCAAACAAGTAGAA+AGG + chr3_3:1546690-1546709 None:intergenic 25.0%
!!! TTTTCTAGTAGCTAAAAAGT+GGG + chr3_3:1546851-1546870 None:intergenic 25.0%
! CTGTAGAATACATAAAGATA+AGG - chr3_3:1547000-1547019 Msa0437630:intron 25.0%
!!! TTCCTTTTGATTTTAGTGAT+TGG - chr3_3:1547164-1547183 Msa0437630:intron 25.0%
!!! TCCTTTTGATTTTAGTGATT+GGG - chr3_3:1547165-1547184 Msa0437630:intron 25.0%
! TAGTAATATGACCAAATTAG+TGG + chr3_3:1547579-1547598 None:intergenic 25.0%
! GAACTTTCAATTCTCTAATA+TGG - chr3_3:1547773-1547792 Msa0437630:intron 25.0%
! ACTAGGAAACAAAAATGTAA+TGG - chr3_3:1547815-1547834 Msa0437630:intron 25.0%
! ATTTCTATTATCACTCAGTA+AGG + chr3_3:1547850-1547869 None:intergenic 25.0%
! AATATTGAGAAGGAAATTTG+GGG + chr3_3:1547929-1547948 None:intergenic 25.0%
! GAATATTGAGAAGGAAATTT+GGG + chr3_3:1547930-1547949 None:intergenic 25.0%
! TGAATATTGAGAAGGAAATT+TGG + chr3_3:1547931-1547950 None:intergenic 25.0%
!!! CCATATTTTAATATGGTGAT+AGG + chr3_3:1548015-1548034 None:intergenic 25.0%
! CCTATCACCATATTAAAATA+TGG - chr3_3:1548012-1548031 Msa0437630:intron 25.0%
! ACCATATTAAAATATGGACT+GGG - chr3_3:1548018-1548037 Msa0437630:intron 25.0%
!! TGAATATATTGTTGCTTCTT+TGG - chr3_3:1548231-1548250 Msa0437630:intron 25.0%
! AATTTGGCAAAGGAAATAAA+AGG + chr3_3:1548405-1548424 None:intergenic 25.0%
!!! ATTTTTCGAAAATTTGGCAA+AGG + chr3_3:1548415-1548434 None:intergenic 25.0%
!!! ACAGTGATTTTTCGAAAATT+TGG + chr3_3:1548421-1548440 None:intergenic 25.0%
! AAAAATCTTCAGACTTAACT+AGG - chr3_3:1548664-1548683 Msa0437630:intron 25.0%
! TAGGTACATAAGAAATTCTT+CGG + chr3_3:1549635-1549654 None:intergenic 25.0%
! AAAATGTTCAAGGATAAAGA+AGG + chr3_3:1549831-1549850 None:intergenic 25.0%
! TCTCATTAAAAAAAGGAACT+AGG + chr3_3:1550074-1550093 None:intergenic 25.0%
!! CTATAAACTATGAAGCATTA+AGG + chr3_3:1550510-1550529 None:intergenic 25.0%
! TATATGTGACAGACAAAAAA+TGG - chr3_3:1550558-1550577 Msa0437630:intron 25.0%
!!! CTACTTTTGAAGACTTTATT+CGG - chr3_3:1550629-1550648 Msa0437630:intron 25.0%
! TTATTCACGATAAGGAAAAA+AGG + chr3_3:1551050-1551069 None:intergenic 25.0%
!!! AAGTCTTGTTATGAATTGTA+AGG - chr3_3:1551068-1551087 Msa0437630:five_prime_UTR 25.0%
! CAAAGTTGTCAAAAAAAAAG+TGG - chr3_3:1551237-1551256 Msa0437630:intron 25.0%
! AGCATTCATCATAATCAATT+GGG - chr3_3:1551322-1551341 Msa0437630:intron 25.0%
! TATCCATGTATTTGTATAAG+AGG - chr3_3:1551617-1551636 Msa0437630:intron 25.0%
! AATCCTCTTATACAAATACA+TGG + chr3_3:1551623-1551642 None:intergenic 25.0%
! GTGGTTAGAAATATTAAGAA+AGG - chr3_3:1551694-1551713 Msa0437630:intron 25.0%
!! AGGATTTCAAAGGATTTTAT+GGG - chr3_3:1551989-1552008 Msa0437630:intron 25.0%
!! AAGGATTCAATGAATTTTAG+GGG - chr3_3:1552026-1552045 Msa0437630:intron 25.0%
! CTAATTTCAAACACAAAATG+AGG + chr3_3:1552347-1552366 None:intergenic 25.0%
! ATGAAAAGATGAGATTTCTT+GGG + chr3_3:1552547-1552566 None:intergenic 25.0%
! CGAAGGATTGTTTAATAAAT+TGG + chr3_3:1552626-1552645 None:intergenic 25.0%
! CAAAATCATTCAAATTTCGA+AGG + chr3_3:1552643-1552662 None:intergenic 25.0%
! ATCACTTAAAAAAAGTCTCA+TGG + chr3_3:1552670-1552689 None:intergenic 25.0%
!!! GTCATTTTAAAAAAGTCTTG+AGG + chr3_3:1552712-1552731 None:intergenic 25.0%
! AATAACTAGTTACCTTGTAA+AGG + chr3_3:1553058-1553077 None:intergenic 25.0%
!! CAACTTTTATATTCCAACAA+TGG - chr3_3:1553292-1553311 Msa0437630:intron 25.0%
! TGAAATCCATGTCATTAAAA+TGG + chr3_3:1553417-1553436 None:intergenic 25.0%
!! ATGGATTTCATCTATCTTTT+TGG - chr3_3:1553427-1553446 Msa0437630:intron 25.0%
!!! TTCATCTATCTTTTTGGTAT+AGG - chr3_3:1553433-1553452 Msa0437630:five_prime_UTR 25.0%
! ACTTACAGAATGTATATATG+TGG - chr3_3:1553677-1553696 Msa0437630:five_prime_UTR 25.0%
!! TAGGTTTGTTTCTGAAATAG+AGG - chr3_3:1538381-1538400 Msa0437630:intron 30.0%
ACTGCAAATTGAGAAAATCA+CGG + chr3_3:1538428-1538447 None:intergenic 30.0%
!!! TGCTTCACTGTTTTTAAGTA+TGG - chr3_3:1538881-1538900 Msa0437630:intron 30.0%
AATTTCGGTTTCTTCGAATT+CGG + chr3_3:1539025-1539044 None:intergenic 30.0%
AGTGTACTATGCAACAATTT+CGG + chr3_3:1539040-1539059 None:intergenic 30.0%
TTATCAAATAGGCGCTATAA+TGG - chr3_3:1539075-1539094 Msa0437630:intron 30.0%
ATGTTGTCAATTGCAAATTG+CGG + chr3_3:1539147-1539166 None:intergenic 30.0%
CAATTTGCAATTGACAACAT+TGG - chr3_3:1539147-1539166 Msa0437630:intron 30.0%
! CATTTCTTTTTGGACTTGAA+CGG - chr3_3:1539199-1539218 Msa0437630:intron 30.0%
TTTACCTAGAACAAAGTTAC+AGG + chr3_3:1539229-1539248 None:intergenic 30.0%
! GTAACTTTGTTCTAGGTAAA+AGG - chr3_3:1539229-1539248 Msa0437630:intron 30.0%
! AACTTTGTTCTAGGTAAAAG+GGG - chr3_3:1539231-1539250 Msa0437630:intron 30.0%
TAAAAAATTACCAGAAGGGT+TGG + chr3_3:1539350-1539369 None:intergenic 30.0%
TTATTATGGTTAGTAGGTTG+AGG - chr3_3:1539367-1539386 Msa0437630:intron 30.0%
AAATCCAAATTCCAATTTGC+AGG + chr3_3:1539454-1539473 None:intergenic 30.0%
!! TTTCGGTGTAAAGGAATTTT+TGG - chr3_3:1539492-1539511 Msa0437630:intron 30.0%
!!! GTGTAAAGGAATTTTTGGTA+TGG - chr3_3:1539497-1539516 Msa0437630:intron 30.0%
CTAATGTCATGTATGTCATT+AGG - chr3_3:1539581-1539600 Msa0437630:intron 30.0%
TAACTATTGCTCATTGTTTG+TGG - chr3_3:1539702-1539721 Msa0437630:intron 30.0%
TTATATTGGAATTCAGAGCA+TGG - chr3_3:1539828-1539847 Msa0437630:intron 30.0%
TATATTGGAATTCAGAGCAT+GGG - chr3_3:1539829-1539848 Msa0437630:intron 30.0%
TAAAACTTATGCATTTGGAG+GGG - chr3_3:1539905-1539924 Msa0437630:intron 30.0%
ATGGAAACATAAAGCAACAA+GGG + chr3_3:1540040-1540059 None:intergenic 30.0%
TATGGAAACATAAAGCAACA+AGG + chr3_3:1540041-1540060 None:intergenic 30.0%
CAATAGTGCTATGATACAAT+TGG - chr3_3:1540076-1540095 Msa0437630:intron 30.0%
CTTGAGATGAAATAAATACG+TGG - chr3_3:1540143-1540162 Msa0437630:intron 30.0%
CTTAAAGAATACAGAGATCT+CGG + chr3_3:1540246-1540265 None:intergenic 30.0%
AGTAAGCCAGAATATAGAAA+AGG + chr3_3:1540297-1540316 None:intergenic 30.0%
CTTTACCCAAATATGTTTCT+TGG - chr3_3:1540315-1540334 Msa0437630:intron 30.0%
!! TGGCTCTAGCATAAATTATT+AGG + chr3_3:1540376-1540395 None:intergenic 30.0%
TAATAATTTATGCTAGAGCC+AGG - chr3_3:1540375-1540394 Msa0437630:intron 30.0%
! ATGTTAGCTTCATTGCAATT+CGG + chr3_3:1540527-1540546 None:intergenic 30.0%
TTCATATAGTCCTCATCAAA+GGG + chr3_3:1540561-1540580 None:intergenic 30.0%
TTTCATATAGTCCTCATCAA+AGG + chr3_3:1540562-1540581 None:intergenic 30.0%
TGAGTGTTATGAAGTTATTG+AGG - chr3_3:1540799-1540818 Msa0437630:intron 30.0%
GTTATGAAGTTATTGAGGAA+AGG - chr3_3:1540804-1540823 Msa0437630:intron 30.0%
! TTGTCATACAAAGCATTAAG+GGG + chr3_3:1540853-1540872 None:intergenic 30.0%
! GTTTGTCATACAAAGCATTA+AGG + chr3_3:1540855-1540874 None:intergenic 30.0%
! TTCTTTGGATTTTGTCAATG+AGG - chr3_3:1541042-1541061 Msa0437630:CDS 30.0%
! ATTTTGTCAATGAGGAACTA+AGG - chr3_3:1541050-1541069 Msa0437630:CDS 30.0%
AATTGAACTCTGTTTGAAAG+AGG + chr3_3:1541148-1541167 None:intergenic 30.0%
!! TTAGAGCCTTGTTTAATACT+TGG - chr3_3:1541190-1541209 Msa0437630:intron 30.0%
!! TAGAGCCTTGTTTAATACTT+GGG - chr3_3:1541191-1541210 Msa0437630:intron 30.0%
AATGTCCCAAGTATTAAACA+AGG + chr3_3:1541199-1541218 None:intergenic 30.0%
!! GTTTTGAACTGATCACAATA+TGG - chr3_3:1541337-1541356 Msa0437630:intron 30.0%
!!! TGTTTGGTTTTGATTCTACA+GGG + chr3_3:1541483-1541502 None:intergenic 30.0%
!!! ATGTTTGGTTTTGATTCTAC+AGG + chr3_3:1541484-1541503 None:intergenic 30.0%
TAATAATCAGAGTCAGTATG+TGG - chr3_3:1541567-1541586 Msa0437630:intron 30.0%
TGTAAATTGTAATGGTTAGG+TGG - chr3_3:1541680-1541699 Msa0437630:intron 30.0%
GTAAATTGTAATGGTTAGGT+GGG - chr3_3:1541681-1541700 Msa0437630:intron 30.0%
TTAAAGAGGAAATGAAAGGA+TGG + chr3_3:1541726-1541745 None:intergenic 30.0%
!! GCTTTTAAAGAGGAAATGAA+AGG + chr3_3:1541730-1541749 None:intergenic 30.0%
!! CTCAGTAAAAGCTTTTAAAG+AGG + chr3_3:1541740-1541759 None:intergenic 30.0%
!! CTCTTTAAAAGCTTTTACTG+AGG - chr3_3:1541738-1541757 Msa0437630:intron 30.0%
TGTTATGTATACAGACTTGA+AGG - chr3_3:1541888-1541907 Msa0437630:intron 30.0%
! TTCAGCATTTTCCATTGTTT+TGG - chr3_3:1542109-1542128 Msa0437630:intron 30.0%
! CGATAATTTGAAATCCTCAA+TGG - chr3_3:1542158-1542177 Msa0437630:intron 30.0%
CTGAAAGAACTGTTTATTGA+AGG - chr3_3:1542213-1542232 Msa0437630:intron 30.0%
!! TGTCTTTAATTTTGGGTGTA+TGG - chr3_3:1542263-1542282 Msa0437630:intron 30.0%
!! GTCTTTAATTTTGGGTGTAT+GGG - chr3_3:1542264-1542283 Msa0437630:intron 30.0%
TGAATATATGATGATTGCGT+AGG - chr3_3:1542498-1542517 Msa0437630:intron 30.0%
!!! TCCTACAAAATTGGCTTTTA+AGG - chr3_3:1542580-1542599 Msa0437630:intron 30.0%
!!! CCTACAAAATTGGCTTTTAA+GGG - chr3_3:1542581-1542600 Msa0437630:intron 30.0%
GCATTTGTACAAAACGTATT+TGG - chr3_3:1542654-1542673 Msa0437630:intron 30.0%
TGGTTAATATTTAAACTCCC+AGG - chr3_3:1542674-1542693 Msa0437630:intron 30.0%
!! ACGTTCACTTTTATTCATGT+GGG + chr3_3:1542841-1542860 None:intergenic 30.0%
AAATGTTTCCAAGCTCATAA+GGG - chr3_3:1542912-1542931 Msa0437630:intron 30.0%
TTCCCAGGAAAGAATTATTA+CGG + chr3_3:1542977-1542996 None:intergenic 30.0%
TATAGCTGGGAATCTAATAT+TGG + chr3_3:1543038-1543057 None:intergenic 30.0%
TAACCCAAGTAGTTTAGTAA+TGG - chr3_3:1543199-1543218 Msa0437630:intron 30.0%
AACCCAAGTAGTTTAGTAAT+GGG - chr3_3:1543200-1543219 Msa0437630:intron 30.0%
TACCCATTACTAAACTACTT+GGG + chr3_3:1543205-1543224 None:intergenic 30.0%
ATTAACACCATATGAGAACT+TGG - chr3_3:1543247-1543266 Msa0437630:intron 30.0%
GTCTCACATTAAATGTGATA+TGG + chr3_3:1543349-1543368 None:intergenic 30.0%
AAACGAAAAGACCTAAACTT+GGG + chr3_3:1543436-1543455 None:intergenic 30.0%
AAAACGAAAAGACCTAAACT+TGG + chr3_3:1543437-1543456 None:intergenic 30.0%
ATTTGTATTGGAAAGAACAG+AGG + chr3_3:1543490-1543509 None:intergenic 30.0%
!! ATCCCCTCTTTTATTTGTAT+TGG + chr3_3:1543502-1543521 None:intergenic 30.0%
TACAAATAAAAGAGGGGATA+AGG - chr3_3:1543503-1543522 Msa0437630:intron 30.0%
ACAAATAAAAGAGGGGATAA+GGG - chr3_3:1543504-1543523 Msa0437630:intron 30.0%
ATATTAGTGAAACTTAGGTG+AGG - chr3_3:1543543-1543562 Msa0437630:intron 30.0%
TATTAGTGAAACTTAGGTGA+GGG - chr3_3:1543544-1543563 Msa0437630:intron 30.0%
TCTCAATGGAAAAACAATGT+TGG - chr3_3:1543615-1543634 Msa0437630:intron 30.0%
CTCAATGGAAAAACAATGTT+GGG - chr3_3:1543616-1543635 Msa0437630:intron 30.0%
TGGATGCATCCATAAAAATA+GGG + chr3_3:1543842-1543861 None:intergenic 30.0%
ATGGATGCATCCATAAAAAT+AGG + chr3_3:1543843-1543862 None:intergenic 30.0%
!! TATTTTTATGGATGCATCCA+TGG - chr3_3:1543842-1543861 Msa0437630:intron 30.0%
!! CAATTGAAGGTCATTTTGAA+GGG + chr3_3:1544611-1544630 None:intergenic 30.0%
ATAAGCCAAAAATTCTCAAG+TGG - chr3_3:1543981-1544000 Msa0437630:intron 30.0%
!! TTTTATGATATGATGGTGAG+AGG + chr3_3:1544129-1544148 None:intergenic 30.0%
! GGGATTTTAGGCTTATATAA+GGG - chr3_3:1544504-1544523 Msa0437630:intron 30.0%
! GGATTTTAGGCTTATATAAG+GGG - chr3_3:1544505-1544524 Msa0437630:intron 30.0%
! GATTTTAGGCTTATATAAGG+GGG - chr3_3:1544506-1544525 Msa0437630:intron 30.0%
!! CAATTGAAGGTCATTTTGAA+GGG - chr3_3:1544611-1544630 Msa0437630:five_prime_UTR 30.0%
AAAAATAGGGACCATATTAG+GGG - chr3_3:1544651-1544670 Msa0437630:five_prime_UTR 30.0%
CAAACACATGTATACATGTT+TGG + chr3_3:1544917-1544936 None:intergenic 30.0%
ATGTATACATGTGTTTGCAT+TGG - chr3_3:1544920-1544939 Msa0437630:intron 30.0%
!! TTGTTCTTTCTGGAATTAAG+TGG + chr3_3:1544965-1544984 None:intergenic 30.0%
TTTGTTTACATGTGAGACAA+AGG + chr3_3:1545027-1545046 None:intergenic 30.0%
TCACATTAAAACATAAGGTC+TGG - chr3_3:1545093-1545112 Msa0437630:five_prime_UTR 30.0%
! AGCAAAAAAACCACATTTTG+AGG + chr3_3:1545198-1545217 None:intergenic 30.0%
AAGAAAGATGTTTATGGGTA+AGG + chr3_3:1545419-1545438 None:intergenic 30.0%
!! TTTCCTCATTTTTGCAGTAT+TGG - chr3_3:1545592-1545611 Msa0437630:intron 30.0%
GAGAAAAATGAAAGTAGGAT+AGG - chr3_3:1545614-1545633 Msa0437630:intron 30.0%
AATAAAAATGTACTCCCTTC+AGG + chr3_3:1545847-1545866 None:intergenic 30.0%
!! TCTTATGAGTTGATGTTGTT+TGG + chr3_3:1546096-1546115 None:intergenic 30.0%
TGTTTACATTCTCTTTGGTT+TGG - chr3_3:1546422-1546441 Msa0437630:intron 30.0%
TAAGAAAATCAATTCCACGT+AGG + chr3_3:1546509-1546528 None:intergenic 30.0%
GATTAATCAGAAACTTCAGA+TGG - chr3_3:1546702-1546721 Msa0437630:intron 30.0%
GCTAAAATTTACTCACTCTT+TGG - chr3_3:1546754-1546773 Msa0437630:intron 30.0%
!! GTTTTCTAGTAGCTAAAAAG+TGG + chr3_3:1546852-1546871 None:intergenic 30.0%
!! GTCTCACTTTTCTTTCATTT+TGG - chr3_3:1546879-1546898 Msa0437630:intron 30.0%
TACATAAAGATAAGGCTAAG+TGG - chr3_3:1547008-1547027 Msa0437630:intron 30.0%
TCAGATGAATGAAGATTATC+AGG - chr3_3:1547085-1547104 Msa0437630:intron 30.0%
ACCCAATCACTAAAATCAAA+AGG + chr3_3:1547169-1547188 None:intergenic 30.0%
!!! ATTTTAGTGATTGGGTTGAT+TGG - chr3_3:1547173-1547192 Msa0437630:intron 30.0%
ATAAATTATAACAACCGAGC+AGG + chr3_3:1547357-1547376 None:intergenic 30.0%
TTTGATTCAACAACGAAGAT+TGG + chr3_3:1547467-1547486 None:intergenic 30.0%
AACAAAAACAGCAATAGACT+AGG - chr3_3:1547798-1547817 Msa0437630:intron 30.0%
TCCATCTTATTCCCTTTAAT+GGG - chr3_3:1547989-1548008 Msa0437630:intron 30.0%
CACCATATTAAAATATGGAC+TGG - chr3_3:1548017-1548036 Msa0437630:intron 30.0%
TTAAATTCGAGGTTAGTAGT+GGG + chr3_3:1548086-1548105 None:intergenic 30.0%
TACATCCAGTTTCAAAAACA+TGG - chr3_3:1548198-1548217 Msa0437630:intron 30.0%
! AAAGGAAATAAAAGGCATAC+TGG + chr3_3:1548397-1548416 None:intergenic 30.0%
TCTGCTGTTAAGAATAATCA+TGG - chr3_3:1548480-1548499 Msa0437630:intron 30.0%
TACTAGAAAGGGGAAAAAAA+CGG + chr3_3:1548558-1548577 None:intergenic 30.0%
ATTATATTCTGCAACATTGG+CGG + chr3_3:1548813-1548832 None:intergenic 30.0%
AGCATTATATTCTGCAACAT+TGG + chr3_3:1548816-1548835 None:intergenic 30.0%
!!! AATCTTGTTTTCTATGCTAC+AGG - chr3_3:1548839-1548858 Msa0437630:intron 30.0%
CTATATACCAAGAAATTGAG+TGG + chr3_3:1549227-1549246 None:intergenic 30.0%
TTAACTCAATGGTCATTTCA+GGG + chr3_3:1549277-1549296 None:intergenic 30.0%
!! TCGCAATGTTGTTTCATAAA+AGG - chr3_3:1549326-1549345 Msa0437630:intron 30.0%
!! CAATGTTGTTTCATAAAAGG+TGG - chr3_3:1549329-1549348 Msa0437630:intron 30.0%
GAATTGTAGATTACAAAGGA+GGG + chr3_3:1549429-1549448 None:intergenic 30.0%
AGAATTGTAGATTACAAAGG+AGG + chr3_3:1549430-1549449 None:intergenic 30.0%
CCTTTGTAATCTACAATTCT+CGG - chr3_3:1549430-1549449 Msa0437630:intron 30.0%
TGAGATGTGGTTAAATTCTT+TGG - chr3_3:1549562-1549581 Msa0437630:five_prime_UTR 30.0%
TTGGATAGTTTAAACCTCTT+AGG - chr3_3:1549581-1549600 Msa0437630:intron 30.0%
TTTACTTTGTTAGTCCTAAG+AGG + chr3_3:1549598-1549617 None:intergenic 30.0%
TACAGTACTATAAGTAAGTC+TGG - chr3_3:1549710-1549729 Msa0437630:intron 30.0%
! TATGTATACAGAAAGAGTGT+TGG - chr3_3:1549789-1549808 Msa0437630:five_prime_UTR 30.0%
AAGAAGCTTCAAAATGTTCA+AGG + chr3_3:1549841-1549860 None:intergenic 30.0%
!!! GCTTCTTTCCCATTTTAATT+TGG - chr3_3:1549854-1549873 Msa0437630:intron 30.0%
TTAAGTCTTTACCTGAAGTT+AGG + chr3_3:1550027-1550046 None:intergenic 30.0%
!!! TCTTGTCGATTTTGATTTTC+TGG - chr3_3:1550097-1550116 Msa0437630:intron 30.0%
! GCATCATAATGCTCTTTTAT+TGG - chr3_3:1550185-1550204 Msa0437630:intron 30.0%
GTAGCATTTCAGTTAGTTAT+TGG + chr3_3:1550227-1550246 None:intergenic 30.0%
AACTTCTAATCCAAAAGTGA+AGG - chr3_3:1550360-1550379 Msa0437630:five_prime_UTR 30.0%
! TAATCCAAAAGTGAAGGTTT+TGG - chr3_3:1550366-1550385 Msa0437630:five_prime_UTR 30.0%
! AATCCAAAAGTGAAGGTTTT+GGG - chr3_3:1550367-1550386 Msa0437630:five_prime_UTR 30.0%
TATTATGTATCCATGTGGAT+TGG + chr3_3:1550452-1550471 None:intergenic 30.0%
GAGTTTATTATGTATCCATG+TGG + chr3_3:1550457-1550476 None:intergenic 30.0%
!!! ACTCTTCGTTTTTTCTTTCA+TGG - chr3_3:1550473-1550492 Msa0437630:intron 30.0%
GAAATTTGTGGAGAAAGATT+TGG - chr3_3:1550791-1550810 Msa0437630:intron 30.0%
!! ACTTTTTCTCCTTCTCTATT+TGG + chr3_3:1550865-1550884 None:intergenic 30.0%
TCAAGGTTCAAATTGTGAAT+CGG - chr3_3:1551020-1551039 Msa0437630:intron 30.0%
AACAAGACTTATTCACGATA+AGG + chr3_3:1551058-1551077 None:intergenic 30.0%
ACATCAAAAGACAAGAAAAG+TGG - chr3_3:1551205-1551224 Msa0437630:five_prime_UTR 30.0%
GTTGTCAAAAAAAAAGTGGT+TGG - chr3_3:1551241-1551260 Msa0437630:intron 30.0%
TGTTTCAATAGAATGAGTCA+TGG - chr3_3:1551283-1551302 Msa0437630:intron 30.0%
CAGCATTCATCATAATCAAT+TGG - chr3_3:1551321-1551340 Msa0437630:intron 30.0%
ATCTCTAGTGTGAAACTATT+GGG + chr3_3:1551368-1551387 None:intergenic 30.0%
AATCTCTAGTGTGAAACTAT+TGG + chr3_3:1551369-1551388 None:intergenic 30.0%
! CACTAGAGATTTGTATTGAT+TGG - chr3_3:1551378-1551397 Msa0437630:intron 30.0%
!! GATTGGTTTCAATCAAGTAT+TGG - chr3_3:1551395-1551414 Msa0437630:intron 30.0%
AACTTATGGATAACATAGTC+AGG - chr3_3:1551477-1551496 Msa0437630:intron 30.0%
ACTTATGGATAACATAGTCA+GGG - chr3_3:1551478-1551497 Msa0437630:intron 30.0%
CAGTATCACAAGAGTTAATA+AGG - chr3_3:1551592-1551611 Msa0437630:intron 30.0%
TTGTATAAGAGGATTTGTCT+TGG - chr3_3:1551628-1551647 Msa0437630:intron 30.0%
!! AAAGCAAACATGTGGTTTTA+TGG - chr3_3:1551718-1551737 Msa0437630:intron 30.0%
!!! AAGCAAACATGTGGTTTTAT+GGG - chr3_3:1551719-1551738 Msa0437630:intron 30.0%
TAGTCCATTTCCTTTCATTA+TGG + chr3_3:1551770-1551789 None:intergenic 30.0%
!!! ATTTATCACACTGACTTTTG+AGG - chr3_3:1551969-1551988 Msa0437630:intron 30.0%
! GAGGATTTCAAAGGATTTTA+TGG - chr3_3:1551988-1552007 Msa0437630:intron 30.0%
CATGAAAAGATGAGATTTCT+TGG + chr3_3:1552548-1552567 None:intergenic 30.0%
!!! TGGATTTTGATGGATTTTGT+GGG + chr3_3:1552606-1552625 None:intergenic 30.0%
!!! TTGGATTTTGATGGATTTTG+TGG + chr3_3:1552607-1552626 None:intergenic 30.0%
GCAACTTAAAAAAAGTCTTG+TGG + chr3_3:1552754-1552773 None:intergenic 30.0%
TAAATATTAGGGGGATGTAT+TGG + chr3_3:1552850-1552869 None:intergenic 30.0%
TTTCAAGATAATGAAGAACC+TGG + chr3_3:1552886-1552905 None:intergenic 30.0%
ATTTGTTCAAGCAATTGATG+TGG + chr3_3:1552917-1552936 None:intergenic 30.0%
ACATCAATTGCTTGAACAAA+TGG - chr3_3:1552916-1552935 Msa0437630:intron 30.0%
!! TCCTTACCATTTTAATGACA+TGG - chr3_3:1553408-1553427 Msa0437630:intron 30.0%
TCCATGTCATTAAAATGGTA+AGG + chr3_3:1553412-1553431 None:intergenic 30.0%
TTCTTCCATGTCTTCAACTT+CGG + chr3_3:1538130-1538149 None:intergenic 35.0%
! AAGTTCAGTTTGGATGGATT+TGG - chr3_3:1538502-1538521 Msa0437630:CDS 35.0%
ACGATTACAGTAAGATACGT+CGG + chr3_3:1538815-1538834 None:intergenic 35.0%
!! TTTTAAGTATGGCGTTGTGT+TGG - chr3_3:1538892-1538911 Msa0437630:intron 35.0%
! ACTTTTGTCCCTATTGAAAC+CGG - chr3_3:1538951-1538970 Msa0437630:intron 35.0%
!! TAACAACACCGGTTTCAATA+GGG + chr3_3:1538962-1538981 None:intergenic 35.0%
!! TTAACAACACCGGTTTCAAT+AGG + chr3_3:1538963-1538982 None:intergenic 35.0%
GTTAAATAGCACAGCTATAG+CGG - chr3_3:1538978-1538997 Msa0437630:intron 35.0%
CGTTCAAGTCCAAAAAGAAA+TGG + chr3_3:1539201-1539220 None:intergenic 35.0%
ACATCCTGTAACTTTGTTCT+AGG - chr3_3:1539222-1539241 Msa0437630:intron 35.0%
GTATTCTGGCAATTTGTACA+AGG - chr3_3:1539267-1539286 Msa0437630:intron 35.0%
TTGCTTTGTCGAATTGTTCA+AGG - chr3_3:1539679-1539698 Msa0437630:intron 35.0%
AGTTACAGGCAGAAATTTAC+AGG + chr3_3:1540442-1540461 None:intergenic 35.0%
AGTATGCCTTCAGTATCAAA+TGG + chr3_3:1540470-1540489 None:intergenic 35.0%
ATGAACAGATAGATCCAATG+TGG + chr3_3:1540493-1540512 None:intergenic 35.0%
TCATATAGTCCTCATCAAAG+GGG + chr3_3:1540560-1540579 None:intergenic 35.0%
AATGGGATGATGATTGTTCT+TGG - chr3_3:1540646-1540665 Msa0437630:intron 35.0%
ATGATTGTTCTTGGAGTGAA+TGG - chr3_3:1540655-1540674 Msa0437630:intron 35.0%
GTTATGATAAAGGAACTTGC+TGG - chr3_3:1540709-1540728 Msa0437630:intron 35.0%
! TGTCATACAAAGCATTAAGG+GGG + chr3_3:1540852-1540871 None:intergenic 35.0%
TTAGAAGAACGTAGAAAGCA+TGG + chr3_3:1540917-1540936 None:intergenic 35.0%
! CTAGTGTTCATTTTGTCCAT+GGG - chr3_3:1541006-1541025 Msa0437630:CDS 35.0%
! TAGTGTTCATTTTGTCCATG+GGG - chr3_3:1541007-1541026 Msa0437630:CDS 35.0%
! GCCCAGTTCCATTTAATTTA+TGG - chr3_3:1541299-1541318 Msa0437630:intron 35.0%
TTTATGGATAAGTTGCATGC+AGG - chr3_3:1541315-1541334 Msa0437630:intron 35.0%
GAAGATGGTTGAAAGTTCTA+TGG - chr3_3:1541365-1541384 Msa0437630:intron 35.0%
GGTTGAAAGTTCTATGGAAA+TGG - chr3_3:1541371-1541390 Msa0437630:intron 35.0%
!!! GTTTGGTTTTGATTCTACAG+GGG + chr3_3:1541482-1541501 None:intergenic 35.0%
TAGCAATGAGTCATCATGTT+TGG + chr3_3:1541499-1541518 None:intergenic 35.0%
GATGCAATTACTACGAAAAC+CGG - chr3_3:1541839-1541858 Msa0437630:intron 35.0%
ATCAACAAGAACATGCAACT+GGG + chr3_3:1541943-1541962 None:intergenic 35.0%
! TGCATTGCAAATGTCATTTG+AGG - chr3_3:1541962-1541981 Msa0437630:intron 35.0%
GATTTCAAATTATCGGAACC+AGG + chr3_3:1542153-1542172 None:intergenic 35.0%
TAACTGTAAGAGCAGACTAA+TGG + chr3_3:1542328-1542347 None:intergenic 35.0%
ATGTTCAATAAATCTGCCAC+TGG - chr3_3:1542358-1542377 Msa0437630:intron 35.0%
TGTTCAATAAATCTGCCACT+GGG - chr3_3:1542359-1542378 Msa0437630:intron 35.0%
! CCCTTAAAAGCCAATTTTGT+AGG + chr3_3:1542584-1542603 None:intergenic 35.0%
! CAGGGAAGGAATTTAGAATT+CGG + chr3_3:1542619-1542638 None:intergenic 35.0%
TTGGAATAATATTCCAGGGA+AGG + chr3_3:1542633-1542652 None:intergenic 35.0%
TTCCCTGGAATATTATTCCA+AGG - chr3_3:1542632-1542651 Msa0437630:intron 35.0%
TGCCTTGGAATAATATTCCA+GGG + chr3_3:1542637-1542656 None:intergenic 35.0%
ATGCCTTGGAATAATATTCC+AGG + chr3_3:1542638-1542657 None:intergenic 35.0%
! TACGTTTTGTACAAATGCCT+TGG + chr3_3:1542652-1542671 None:intergenic 35.0%
!! GTTCACTTTTATTCATGTGG+GGG + chr3_3:1542839-1542858 None:intergenic 35.0%
!! CGTTCACTTTTATTCATGTG+GGG + chr3_3:1542840-1542859 None:intergenic 35.0%
!! CACGTTCACTTTTATTCATG+TGG + chr3_3:1542842-1542861 None:intergenic 35.0%
GAAATGTTTCCAAGCTCATA+AGG - chr3_3:1542911-1542930 Msa0437630:intron 35.0%
AATGTTTCCAAGCTCATAAG+GGG - chr3_3:1542913-1542932 Msa0437630:intron 35.0%
TCCCAGGAAAGAATTATTAC+GGG + chr3_3:1542976-1542995 None:intergenic 35.0%
GGAAATAGATAATTGTTCCC+AGG + chr3_3:1542992-1543011 None:intergenic 35.0%
TGGAAATCTTTCACCAAAGA+GGG + chr3_3:1543085-1543104 None:intergenic 35.0%
CTACCCATTACTAAACTACT+TGG + chr3_3:1543206-1543225 None:intergenic 35.0%
ACCATATGAGAACTTGGATT+GGG - chr3_3:1543253-1543272 Msa0437630:intron 35.0%
! CTCTACAAATCCAGCTTTTA+AGG - chr3_3:1543286-1543305 Msa0437630:intron 35.0%
!!! GGGTGTGGTTTTATATTTGA+TGG - chr3_3:1543564-1543583 Msa0437630:intron 35.0%
GCATACTGGAAAGAAAAAAG+TGG - chr3_3:1543665-1543684 Msa0437630:intron 35.0%
TAGGGACACCCAATATAATA+TGG + chr3_3:1543812-1543831 None:intergenic 35.0%
TATATTGGGTGTCCCTAATA+TGG - chr3_3:1543815-1543834 Msa0437630:intron 35.0%
!! GCAATTGAAGGTCATTTTGA+AGG + chr3_3:1544610-1544629 None:intergenic 35.0%
TCAAAATGACCTTCAATTGC+AGG - chr3_3:1543870-1543889 Msa0437630:intron 35.0%
! CTTCTCCACTTGAGAATTTT+TGG + chr3_3:1543989-1544008 None:intergenic 35.0%
AGGAGAGATAAAAGAAGAAG+AGG + chr3_3:1544056-1544075 None:intergenic 35.0%
TAACAGAGAGAGAGAGATAA+AGG + chr3_3:1544183-1544202 None:intergenic 35.0%
GGAGAAATTGATCCAACTTA+TGG + chr3_3:1544212-1544231 None:intergenic 35.0%
TTCACATGTTCACAAGATGT+TGG + chr3_3:1544264-1544283 None:intergenic 35.0%
GAATGTATGTACAATAGTGG+TGG + chr3_3:1544339-1544358 None:intergenic 35.0%
GGTGAATGTATGTACAATAG+TGG + chr3_3:1544342-1544361 None:intergenic 35.0%
AGAGAGAGAAAGAGATTTGT+TGG + chr3_3:1544363-1544382 None:intergenic 35.0%
! GGGGATTTTAGGCTTATATA+AGG - chr3_3:1544503-1544522 Msa0437630:intron 35.0%
TTTGTGTAACCTGCAATTGA+AGG - chr3_3:1544598-1544617 Msa0437630:five_prime_UTR 35.0%
TCAAAATGACCTTCAATTGC+AGG + chr3_3:1543870-1543889 None:intergenic 35.0%
!! GCAATTGAAGGTCATTTTGA+AGG - chr3_3:1544610-1544629 Msa0437630:five_prime_UTR 35.0%
!! CATTGGTTTCCAAGAACATT+AGG - chr3_3:1544937-1544956 Msa0437630:intron 35.0%
TAAGTGGTACCTAATGTTCT+TGG + chr3_3:1544949-1544968 None:intergenic 35.0%
GCAGTTATAATGACAAAACG+CGG - chr3_3:1545280-1545299 Msa0437630:five_prime_UTR 35.0%
CAGTTATAATGACAAAACGC+GGG - chr3_3:1545281-1545300 Msa0437630:five_prime_UTR 35.0%
AGAAGATCTTATGGGTAACT+TGG + chr3_3:1545390-1545409 None:intergenic 35.0%
GGAATTGGAGAAGATCTTAT+GGG + chr3_3:1545398-1545417 None:intergenic 35.0%
AGGAATTGGAGAAGATCTTA+TGG + chr3_3:1545399-1545418 None:intergenic 35.0%
GATGTTTATGGGTAAGGAAT+TGG + chr3_3:1545413-1545432 None:intergenic 35.0%
TCTCCAATACTGCAAAAATG+AGG + chr3_3:1545598-1545617 None:intergenic 35.0%
AGTAAACTCTGCAATCTTCA+TGG - chr3_3:1545644-1545663 Msa0437630:intron 35.0%
GGAGAACACGATGAAAAATT+AGG - chr3_3:1545677-1545696 Msa0437630:intron 35.0%
ATCAGAATTGAAGGGAAGAA+AGG - chr3_3:1545717-1545736 Msa0437630:intron 35.0%
AAAGTGTGTGTTTGGTATAG+CGG + chr3_3:1546226-1546245 None:intergenic 35.0%
! GACATGCTGATATATTTTGC+TGG - chr3_3:1546250-1546269 Msa0437630:intron 35.0%
ATAAGTGATGTAATCTCTGC+AGG - chr3_3:1546311-1546330 Msa0437630:intron 35.0%
CTCTATCCATAGTACAGAAA+TGG + chr3_3:1546593-1546612 None:intergenic 35.0%
TACAAAGACCAAGACATCAA+AGG + chr3_3:1546978-1546997 None:intergenic 35.0%
GAAGATTATCAGGACTGTAT+CGG - chr3_3:1547095-1547114 Msa0437630:intron 35.0%
TCATATAGATTCCATGACTG+AGG - chr3_3:1547127-1547146 Msa0437630:intron 35.0%
!! ACTGGTCTTGTTTAAATTGC+AGG - chr3_3:1547238-1547257 Msa0437630:intron 35.0%
TAAATTGCAGGAAGAAAGTG+TGG - chr3_3:1547250-1547269 Msa0437630:intron 35.0%
AGTGACTGGTAACATGATAA+TGG + chr3_3:1547443-1547462 None:intergenic 35.0%
AGTAAGTGACCCAAAAAATC+AGG - chr3_3:1547677-1547696 Msa0437630:intron 35.0%
! TATATTTTGTTCGTCCTCTC+TGG + chr3_3:1547717-1547736 None:intergenic 35.0%
AGAATGACAAATTGAAGGAG+GGG + chr3_3:1547970-1547989 None:intergenic 35.0%
GAGAATGACAAATTGAAGGA+GGG + chr3_3:1547971-1547990 None:intergenic 35.0%
GATGGAGAATGACAAATTGA+AGG + chr3_3:1547975-1547994 None:intergenic 35.0%
CTCCATCTTATTCCCTTTAA+TGG - chr3_3:1547988-1548007 Msa0437630:intron 35.0%
!!! GCCCAGTCCATATTTTAATA+TGG + chr3_3:1548022-1548041 None:intergenic 35.0%
TAAATTCGAGGTTAGTAGTG+GGG + chr3_3:1548085-1548104 None:intergenic 35.0%
GTTAAATTCGAGGTTAGTAG+TGG + chr3_3:1548087-1548106 None:intergenic 35.0%
GATGTATCATTAACTTAGCG+AGG + chr3_3:1548184-1548203 None:intergenic 35.0%
!!! AGAAGCCATGTTTTTGAAAC+TGG + chr3_3:1548206-1548225 None:intergenic 35.0%
GGTATGTTACCTTAAACAGT+AGG - chr3_3:1548300-1548319 Msa0437630:intron 35.0%
GATCAAAAGCCTACTGTTTA+AGG + chr3_3:1548312-1548331 None:intergenic 35.0%
! AACAGTAGGCTTTTGATCTT+TGG - chr3_3:1548314-1548333 Msa0437630:intron 35.0%
AAAGCAAGAGCTACATAACA+TGG + chr3_3:1548458-1548477 None:intergenic 35.0%
ACGAGTTTGTAACTTGAATG+AGG + chr3_3:1548514-1548533 None:intergenic 35.0%
CGGAAATATTTCCAAGATCA+TGG + chr3_3:1548538-1548557 None:intergenic 35.0%
CAGTTATGTCTACTAGAAAG+GGG + chr3_3:1548568-1548587 None:intergenic 35.0%
GCAGTTATGTCTACTAGAAA+GGG + chr3_3:1548569-1548588 None:intergenic 35.0%
AGCAGTTATGTCTACTAGAA+AGG + chr3_3:1548570-1548589 None:intergenic 35.0%
TAACAGAAAGCCTGAAGATA+CGG - chr3_3:1548626-1548645 Msa0437630:intron 35.0%
GCTTACAAATGAATCACCAA+TGG + chr3_3:1548919-1548938 None:intergenic 35.0%
TGAAATCTGAGAGGTCTATA+GGG + chr3_3:1549030-1549049 None:intergenic 35.0%
CAATGCATGTGTCAATAGAT+TGG + chr3_3:1549165-1549184 None:intergenic 35.0%
CAATCTATTGACACATGCAT+TGG - chr3_3:1549163-1549182 Msa0437630:intron 35.0%
GTTAACTCAATGGTCATTTC+AGG + chr3_3:1549278-1549297 None:intergenic 35.0%
! GGTTTTACTTCGCTTGAAAA+AGG - chr3_3:1549350-1549369 Msa0437630:intron 35.0%
TTCATACATGCAGGTGAATT+GGG + chr3_3:1549395-1549414 None:intergenic 35.0%
AATGAGAACTTCATACATGC+AGG + chr3_3:1549404-1549423 None:intergenic 35.0%
CCGAGAATTGTAGATTACAA+AGG + chr3_3:1549433-1549452 None:intergenic 35.0%
ATGTACTATGTGATGAGATG+TGG - chr3_3:1549549-1549568 Msa0437630:five_prime_UTR 35.0%
GAAAAGGATATCCTAACTTC+AGG - chr3_3:1550013-1550032 Msa0437630:intron 35.0%
TGACAGACAAAAAATGGCTT+TGG - chr3_3:1550564-1550583 Msa0437630:intron 35.0%
AAGTCTTCAAAAGTAGCATC+TGG + chr3_3:1550625-1550644 None:intergenic 35.0%
!! CTTTTGAAGACTTTATTCGG+TGG - chr3_3:1550632-1550651 Msa0437630:intron 35.0%
! GAAGCTTTCTAAGAGAATGT+CGG - chr3_3:1550762-1550781 Msa0437630:intron 35.0%
TCTCTATTTGGATCAAGAAG+AGG + chr3_3:1550853-1550872 None:intergenic 35.0%
CTTCTTGATCCAAATAGAGA+AGG - chr3_3:1550853-1550872 Msa0437630:intron 35.0%
ATTTCAAACAATGAGGGAAG+TGG - chr3_3:1550957-1550976 Msa0437630:intron 35.0%
TATGGGAAAAATGTCCATGT+TGG - chr3_3:1551736-1551755 Msa0437630:intron 35.0%
! ATGGACTACTTGTACGTATT+TGG - chr3_3:1551782-1551801 Msa0437630:five_prime_UTR 35.0%
!! CTGACTTTTGAGGATTTCAA+AGG - chr3_3:1551979-1551998 Msa0437630:intron 35.0%
!! CGTTTGAGTTTTTCTAAGAG+AGG - chr3_3:1552373-1552392 Msa0437630:five_prime_UTR 35.0%
TCAATTGCTTGAACAAATGG+TGG - chr3_3:1552919-1552938 Msa0437630:intron 35.0%
TTATGGAGAACTGAAACAGA+TGG - chr3_3:1552985-1553004 Msa0437630:five_prime_UTR 35.0%
TCAACAACTTTATCCTACCA+TGG - chr3_3:1553018-1553037 Msa0437630:intron 35.0%
TTAATTTCGCTCATGTGAGA+AGG - chr3_3:1553080-1553099 Msa0437630:intron 35.0%
GAAAGAAGAGGTTGTTGAAA+AGG - chr3_3:1553325-1553344 Msa0437630:intron 35.0%
GGAATTTGACAAGAAACAAG+CGG - chr3_3:1553454-1553473 Msa0437630:five_prime_UTR 35.0%
TTGACAACACTTCTCTTTCA+TGG + chr3_3:1553487-1553506 None:intergenic 35.0%
AAAATAATCTCCCTGAGGAT+TGG + chr3_3:1553587-1553606 None:intergenic 35.0%
! GTTTATTGGTCTCAAACTCA+TGG - chr3_3:1553758-1553777 Msa0437630:five_prime_UTR 35.0%
! CGATCATATCTGAGATTCGA+TGG - chr3_3:1538038-1538057 Msa0437630:CDS 40.0%
TCATCGTCATCAGTAGAATC+AGG + chr3_3:1538102-1538121 None:intergenic 40.0%
ATGGAAGAAGATGAAGACGT+AGG - chr3_3:1538141-1538160 Msa0437630:CDS 40.0%
! TAGAGGCTTTTTGTACGTTC+TGG - chr3_3:1538398-1538417 Msa0437630:CDS 40.0%
! GTTGTGTTGGTGGAAATAGT+GGG - chr3_3:1538905-1538924 Msa0437630:intron 40.0%
! TTGTGTTGGTGGAAATAGTG+GGG - chr3_3:1538906-1538925 Msa0437630:intron 40.0%
!! GCTGTGCTATTTAACAACAC+CGG + chr3_3:1538973-1538992 None:intergenic 40.0%
TGCCTTGAAAACTTACAGCA+TGG - chr3_3:1539309-1539328 Msa0437630:intron 40.0%
! CTCCATGCTGTAAGTTTTCA+AGG + chr3_3:1539314-1539333 None:intergenic 40.0%
!!! TATTTTGAGACCAACCCTTC+TGG - chr3_3:1539337-1539356 Msa0437630:intron 40.0%
! ATGGTTAGTAGGTTGAGGTT+TGG - chr3_3:1539372-1539391 Msa0437630:intron 40.0%
! TGGTTAGTAGGTTGAGGTTT+GGG - chr3_3:1539373-1539392 Msa0437630:intron 40.0%
CAAGCCTGCAAATTGGAATT+TGG - chr3_3:1539447-1539466 Msa0437630:intron 40.0%
CACGATCTGCAGTTATGTTT+CGG - chr3_3:1539475-1539494 Msa0437630:intron 40.0%
! GCAGTTATGTTTCGGTGTAA+AGG - chr3_3:1539483-1539502 Msa0437630:intron 40.0%
CCAATATAAGCTTTCCGAGA+AGG + chr3_3:1539817-1539836 None:intergenic 40.0%
CCTTCTCGGAAAGCTTATAT+TGG - chr3_3:1539814-1539833 Msa0437630:intron 40.0%
GAGACAGGAACTCACAAATT+TGG + chr3_3:1539950-1539969 None:intergenic 40.0%
CTTTACATAGAAGAACAGCC+TGG + chr3_3:1540396-1540415 None:intergenic 40.0%
TTACTGGTGAGACATCAAGT+GGG - chr3_3:1540619-1540638 Msa0437630:intron 40.0%
TCTGCAGAAGATCCTGTTAA+AGG - chr3_3:1540681-1540700 Msa0437630:intron 40.0%
TTGCTGGTAGAAATAGCTGT+TGG - chr3_3:1540725-1540744 Msa0437630:intron 40.0%
! GTCATACAAAGCATTAAGGG+GGG + chr3_3:1540851-1540870 None:intergenic 40.0%
GGACAAAATGAACACTAGGT+GGG + chr3_3:1541004-1541023 None:intergenic 40.0%
TGGACAAAATGAACACTAGG+TGG + chr3_3:1541005-1541024 None:intergenic 40.0%
CCATGGACAAAATGAACACT+AGG + chr3_3:1541008-1541027 None:intergenic 40.0%
! CCTAGTGTTCATTTTGTCCA+TGG - chr3_3:1541005-1541024 Msa0437630:CDS 40.0%
GGGAAGTCTAACGATTTCTT+TGG - chr3_3:1541027-1541046 Msa0437630:CDS 40.0%
AGAGGCTAGACATACAGAAT+GGG + chr3_3:1541130-1541149 None:intergenic 40.0%
AAGAGGCTAGACATACAGAA+TGG + chr3_3:1541131-1541150 None:intergenic 40.0%
CTCATGAAAACAGCAAAGCA+TGG + chr3_3:1541264-1541283 None:intergenic 40.0%
!!! CATGCTTTGCTGTTTTCATG+AGG - chr3_3:1541262-1541281 Msa0437630:intron 40.0%
CACAATATGGTCAGAGAAGA+TGG - chr3_3:1541350-1541369 Msa0437630:intron 40.0%
TTCTATGGAAATGGCTGAAC+TGG - chr3_3:1541380-1541399 Msa0437630:intron 40.0%
AGAAGTGGTTGATCTCTCTA+AGG - chr3_3:1541427-1541446 Msa0437630:intron 40.0%
CATCAACAAGAACATGCAAC+TGG + chr3_3:1541944-1541963 None:intergenic 40.0%
!!! TTTTCCATTGTTTTGGCCTG+TGG - chr3_3:1542116-1542135 Msa0437630:intron 40.0%
TATATGATGATTGCGTAGGC+AGG - chr3_3:1542502-1542521 Msa0437630:intron 40.0%
CGAATTCTAAATTCCTTCCC+TGG - chr3_3:1542617-1542636 Msa0437630:intron 40.0%
TTTGCCATGTGTGATGCAAT+TGG + chr3_3:1542792-1542811 None:intergenic 40.0%
AGTGAACGTGCATTAAGTAG+TGG - chr3_3:1542852-1542871 Msa0437630:intron 40.0%
! AACGTGCATTAAGTAGTGGA+GGG - chr3_3:1542856-1542875 Msa0437630:intron 40.0%
TGGAAACATTTCATTCCCGT+CGG + chr3_3:1542903-1542922 None:intergenic 40.0%
ATGTTTCCAAGCTCATAAGG+GGG - chr3_3:1542914-1542933 Msa0437630:intron 40.0%
! GGAACTTTTTATTGCCACGT+AGG + chr3_3:1542954-1542973 None:intergenic 40.0%
TCCCCGTAATAATTCTTTCC+TGG - chr3_3:1542971-1542990 Msa0437630:five_prime_UTR 40.0%
CCCAGGAAAGAATTATTACG+GGG + chr3_3:1542975-1542994 None:intergenic 40.0%
CCCCGTAATAATTCTTTCCT+GGG - chr3_3:1542972-1542991 Msa0437630:five_prime_UTR 40.0%
GTGGAAATCTTTCACCAAAG+AGG + chr3_3:1543086-1543105 None:intergenic 40.0%
TGAGACTTGAGAGCCATATT+AGG + chr3_3:1543140-1543159 None:intergenic 40.0%
CACCATATGAGAACTTGGAT+TGG - chr3_3:1543252-1543271 Msa0437630:intron 40.0%
ACCCAATCCAAGTTCTCATA+TGG + chr3_3:1543257-1543276 None:intergenic 40.0%
ATAAAAGAGGGGATAAGGGA+AGG - chr3_3:1543508-1543527 Msa0437630:intron 40.0%
TAAAAGAGGGGATAAGGGAA+GGG - chr3_3:1543509-1543528 Msa0437630:intron 40.0%
GGTTGATTAGACGTTCTCAA+TGG - chr3_3:1543601-1543620 Msa0437630:intron 40.0%
GGAAAAACAATGTTGGGAAG+TGG - chr3_3:1543622-1543641 Msa0437630:intron 40.0%
! TTTTCTTTCCAGTATGCCGA+TGG + chr3_3:1543662-1543681 None:intergenic 40.0%
GTTTGTGAACCTGCAATTGA+AGG + chr3_3:1543882-1543901 None:intergenic 40.0%
CTTGAAGAGAAGAGAAAGAG+AGG + chr3_3:1544021-1544040 None:intergenic 40.0%
TTATCTCTCCTTCACCTTCA+AGG - chr3_3:1544065-1544084 Msa0437630:intron 40.0%
TTTGTGTGTTGAAGCCTTGA+AGG + chr3_3:1544082-1544101 None:intergenic 40.0%
CTGTTAGTTGCTCCATAAGT+TGG - chr3_3:1544197-1544216 Msa0437630:intron 40.0%
TTTCTCCTCTCGTCTGAATT+CGG - chr3_3:1544225-1544244 Msa0437630:intron 40.0%
ACATGTTCACAAGATGTTGG+AGG + chr3_3:1544261-1544280 None:intergenic 40.0%
GATGAAAGTGGAACTTTCAG+CGG + chr3_3:1544418-1544437 None:intergenic 40.0%
GCAAATGCAGAAGATGAAAG+TGG + chr3_3:1544430-1544449 None:intergenic 40.0%
TCATCTTCATCTTCTCCACT+TGG - chr3_3:1544482-1544501 Msa0437630:intron 40.0%
CATCTTCATCTTCTCCACTT+GGG - chr3_3:1544483-1544502 Msa0437630:intron 40.0%
ATCTTCATCTTCTCCACTTG+GGG - chr3_3:1544484-1544503 Msa0437630:intron 40.0%
ATAAGCCTAAAATCCCCAAG+TGG + chr3_3:1544500-1544519 None:intergenic 40.0%
!! AGGTCATTTTGAAGGGACTA+TGG - chr3_3:1544618-1544637 Msa0437630:five_prime_UTR 40.0%
!! GGTCATTTTGAAGGGACTAT+GGG - chr3_3:1544619-1544638 Msa0437630:five_prime_UTR 40.0%
ATGGGTGCACCCTTAAAAAT+AGG - chr3_3:1544637-1544656 Msa0437630:five_prime_UTR 40.0%
TGGGTGCACCCTTAAAAATA+GGG - chr3_3:1544638-1544657 Msa0437630:five_prime_UTR 40.0%
! ATAATAGGGTGCCCCTAATA+TGG + chr3_3:1544665-1544684 None:intergenic 40.0%
GTGCTCATAGTTGTTCTTTC+TGG + chr3_3:1544975-1544994 None:intergenic 40.0%
AACAGACACAAAGAATGCCA+AGG + chr3_3:1545158-1545177 None:intergenic 40.0%
TGGCATTCTTTGTGTCTGTT+TGG - chr3_3:1545158-1545177 Msa0437630:intron 40.0%
!! CTGCTTTTCCCATGATGTTT+GGG - chr3_3:1545231-1545250 Msa0437630:intron 40.0%
TCAGATTGCCCAAACATCAT+GGG + chr3_3:1545242-1545261 None:intergenic 40.0%
TTCAGATTGCCCAAACATCA+TGG + chr3_3:1545243-1545262 None:intergenic 40.0%
TATAATGACAAAACGCGGGT+TGG - chr3_3:1545285-1545304 Msa0437630:five_prime_UTR 40.0%
!! GAAGCTTGGATTTCTAGCTT+CGG + chr3_3:1545312-1545331 None:intergenic 40.0%
TAGAGGGAGAAGAACTGTAT+CGG + chr3_3:1545461-1545480 None:intergenic 40.0%
GCAGATGAAACAGAGAAAAG+TGG - chr3_3:1545511-1545530 Msa0437630:intron 40.0%
AAACTCTGCAATCTTCATGG+AGG - chr3_3:1545647-1545666 Msa0437630:intron 40.0%
AATCTTCATGGAGGCTTCAA+TGG - chr3_3:1545656-1545675 Msa0437630:intron 40.0%
ACTGAATGGTTGAAACCTGA+AGG - chr3_3:1545829-1545848 Msa0437630:intron 40.0%
CTGAATGGTTGAAACCTGAA+GGG - chr3_3:1545830-1545849 Msa0437630:intron 40.0%
TGTCTTGCAAAGTGTGTGTT+TGG + chr3_3:1546234-1546253 None:intergenic 40.0%
! ATTCTCAGATTTTGCCGATG+AGG - chr3_3:1546340-1546359 Msa0437630:intron 40.0%
! TTCTCAGATTTTGCCGATGA+GGG - chr3_3:1546341-1546360 Msa0437630:intron 40.0%
!! CGAAGTCTTATTTCCCTCAT+CGG + chr3_3:1546357-1546376 None:intergenic 40.0%
TAAGACTTCGCGATCTGTAA+AGG - chr3_3:1546367-1546386 Msa0437630:intron 40.0%
AAGACTTCGCGATCTGTAAA+GGG - chr3_3:1546368-1546387 Msa0437630:intron 40.0%
TTTGGCAACTGCAATATACG+TGG - chr3_3:1546440-1546459 Msa0437630:intron 40.0%
!! TTCTTTCCAGCTCTAGGTTT+AGG + chr3_3:1546479-1546498 None:intergenic 40.0%
TGTCAGCCATTTCTGTACTA+TGG - chr3_3:1546584-1546603 Msa0437630:intron 40.0%
! ATGGATAGAGTTTGTTCGAG+AGG - chr3_3:1546603-1546622 Msa0437630:intron 40.0%
! TAGAGTTTGTTCGAGAGGTT+AGG - chr3_3:1546608-1546627 Msa0437630:intron 40.0%
AAGAGTCACAACCATTACCT+AGG - chr3_3:1546641-1546660 Msa0437630:intron 40.0%
TTTCCCTACCTTTGATGTCT+TGG - chr3_3:1546967-1546986 Msa0437630:intron 40.0%
AGACCAAGACATCAAAGGTA+GGG + chr3_3:1546973-1546992 None:intergenic 40.0%
AAGACCAAGACATCAAAGGT+AGG + chr3_3:1546974-1546993 None:intergenic 40.0%
AGCTTGCAATATGCATTGAG+AGG - chr3_3:1547057-1547076 Msa0437630:intron 40.0%
!!! ACACCCAGTGAGATTTTTTC+CGG - chr3_3:1547299-1547318 Msa0437630:intron 40.0%
TTCCCGGAAAAAATCTCACT+GGG + chr3_3:1547305-1547324 None:intergenic 40.0%
TTTCCCGGAAAAAATCTCAC+TGG + chr3_3:1547306-1547325 None:intergenic 40.0%
!!! TTTTTTCCGGGAAAGTTGAC+AGG - chr3_3:1547312-1547331 Msa0437630:intron 40.0%
GATAACAGCTTCCTCTCTTA+TGG - chr3_3:1547408-1547427 Msa0437630:intron 40.0%
AGTTCAAGAGATAGCTCTTG+GGG + chr3_3:1547534-1547553 None:intergenic 40.0%
CAGTTCAAGAGATAGCTCTT+GGG + chr3_3:1547535-1547554 None:intergenic 40.0%
TCAGTTCAAGAGATAGCTCT+TGG + chr3_3:1547536-1547555 None:intergenic 40.0%
AAGAGCTATCTCTTGAACTG+AGG - chr3_3:1547535-1547554 Msa0437630:intron 40.0%
AGAGCTATCTCTTGAACTGA+GGG - chr3_3:1547536-1547555 Msa0437630:intron 40.0%
TCTAATCCTAGACGTGAAGA+GGG + chr3_3:1547623-1547642 None:intergenic 40.0%
AAGTGACCCAAAAAATCAGG+TGG - chr3_3:1547680-1547699 Msa0437630:intron 40.0%
!!! ATTGGGCCACCTGATTTTTT+GGG + chr3_3:1547689-1547708 None:intergenic 40.0%
!!! TATTGGGCCACCTGATTTTT+TGG + chr3_3:1547690-1547709 None:intergenic 40.0%
AAAAAATCAGGTGGCCCAAT+AGG - chr3_3:1547689-1547708 Msa0437630:intron 40.0%
! AGGGAGCATGAATATTGAGA+AGG + chr3_3:1547939-1547958 None:intergenic 40.0%
GAATGACAAATTGAAGGAGG+GGG + chr3_3:1547969-1547988 None:intergenic 40.0%
GGAGAATGACAAATTGAAGG+AGG + chr3_3:1547972-1547991 None:intergenic 40.0%
GCCCATTAAAGGGAATAAGA+TGG + chr3_3:1547993-1548012 None:intergenic 40.0%
ATGGTGATAGGCCCATTAAA+GGG + chr3_3:1548003-1548022 None:intergenic 40.0%
TATGGTGATAGGCCCATTAA+AGG + chr3_3:1548004-1548023 None:intergenic 40.0%
TTCAGGCTTTCTGTTAACAG+TGG + chr3_3:1548622-1548641 None:intergenic 40.0%
TTATACAGGTCCGTATCTTC+AGG + chr3_3:1548639-1548658 None:intergenic 40.0%
TCTTCAGACTTAACTAGGAG+AGG - chr3_3:1548669-1548688 Msa0437630:intron 40.0%
ACTACAATGACAAGGCCAAA+TGG + chr3_3:1548785-1548804 None:intergenic 40.0%
ATGTCTTCTGTCATAAGAGG+TGG + chr3_3:1548867-1548886 None:intergenic 40.0%
TGCATGTCTTCTGTCATAAG+AGG + chr3_3:1548870-1548889 None:intergenic 40.0%
GTGAAATCTGAGAGGTCTAT+AGG + chr3_3:1549031-1549050 None:intergenic 40.0%
AGACCTCTCAGATTTCACAT+AGG - chr3_3:1549033-1549052 Msa0437630:intron 40.0%
GACCTCTCAGATTTCACATA+GGG - chr3_3:1549034-1549053 Msa0437630:intron 40.0%
ACCTCTCAGATTTCACATAG+GGG - chr3_3:1549035-1549054 Msa0437630:intron 40.0%
!! ATATTAAATCGGTGCTGCAG+TGG - chr3_3:1549089-1549108 Msa0437630:intron 40.0%
!! ATAGATTGGCTCAAGTTGGT+TGG + chr3_3:1549151-1549170 None:intergenic 40.0%
! GTCAATAGATTGGCTCAAGT+TGG + chr3_3:1549155-1549174 None:intergenic 40.0%
! ACACATGCATTGGTGTAAAG+TGG - chr3_3:1549173-1549192 Msa0437630:intron 40.0%
TCATACATGCAGGTGAATTG+GGG + chr3_3:1549394-1549413 None:intergenic 40.0%
CTTCATACATGCAGGTGAAT+TGG + chr3_3:1549396-1549415 None:intergenic 40.0%
TATAAGTAAGTCTGGTCCTG+AGG - chr3_3:1549718-1549737 Msa0437630:five_prime_UTR 40.0%
! CTTGCATTTTCATCAACCTC+AGG + chr3_3:1549737-1549756 None:intergenic 40.0%
!! CTGAGGTTGATGAAAATGCA+AGG - chr3_3:1549735-1549754 Msa0437630:five_prime_UTR 40.0%
! ACAGAATTTTTCTGCTCAGC+TGG - chr3_3:1549991-1550010 Msa0437630:intron 40.0%
! TTTTTCTGCTCAGCTGGAAA+AGG - chr3_3:1549997-1550016 Msa0437630:intron 40.0%
! TCTCCCAAAACCTTCACTTT+TGG + chr3_3:1550373-1550392 None:intergenic 40.0%
!! TTATTTTGTGCTAGTGCCAG+TGG - chr3_3:1550423-1550442 Msa0437630:intron 40.0%
GGTTCAAATTGTGAATCGGA+AGG - chr3_3:1551024-1551043 Msa0437630:intron 40.0%
TCGTAAGATACTGACAACCA+TGG - chr3_3:1551434-1551453 Msa0437630:intron 40.0%
TAGTCACTATTGCAACTAGG+AGG + chr3_3:1551547-1551566 None:intergenic 40.0%
TCCTAGTTGCAATAGTGACT+AGG - chr3_3:1551546-1551565 Msa0437630:intron 40.0%
CCTAGTTGCAATAGTGACTA+GGG - chr3_3:1551547-1551566 Msa0437630:intron 40.0%
!! TATGGCTTTATTAACCGAGC+AGG + chr3_3:1551662-1551681 None:intergenic 40.0%
AACCACTTATCTGTGCACTA+TGG + chr3_3:1551680-1551699 None:intergenic 40.0%
AGAAAGGCAAAGCAAACATG+TGG - chr3_3:1551710-1551729 Msa0437630:intron 40.0%
CCATTTCCTTTCATTATGGC+AGG + chr3_3:1551766-1551785 None:intergenic 40.0%
CCTGCCATAATGAAAGGAAA+TGG - chr3_3:1551763-1551782 Msa0437630:intron 40.0%
TTTGGTTGCTTGAGAGACTA+AGG - chr3_3:1551800-1551819 Msa0437630:five_prime_UTR 40.0%
TTGGTTGCTTGAGAGACTAA+GGG - chr3_3:1551801-1551820 Msa0437630:five_prime_UTR 40.0%
TAAGGGGGATGTATTGGATT+AGG - chr3_3:1551818-1551837 Msa0437630:five_prime_UTR 40.0%
ATAGAGAGACGAAGAGAGAA+AGG - chr3_3:1552453-1552472 Msa0437630:five_prime_UTR 40.0%
TTAGGGGGATGTATTGGATT+AGG + chr3_3:1552844-1552863 None:intergenic 40.0%
AAGCAATTGATGTGGTCGTA+AGG + chr3_3:1552909-1552928 None:intergenic 40.0%
! ACGCTAAGTCAGACTAGTTA+TGG - chr3_3:1552968-1552987 Msa0437630:five_prime_UTR 40.0%
AAAATTTCTCTTGAGAGCCG+TGG + chr3_3:1553260-1553279 None:intergenic 40.0%
! TTCAAGCTTGTTCCCATTGT+TGG + chr3_3:1553308-1553327 None:intergenic 40.0%
TGGTAAGGAAGACTTATCTG+TGG + chr3_3:1553397-1553416 None:intergenic 40.0%
TTGACAAGAAACAAGCGGTA+AGG - chr3_3:1553459-1553478 Msa0437630:intron 40.0%
TCAAAACCTTTCTCCAAGAC+TGG + chr3_3:1553535-1553554 None:intergenic 40.0%
!!! TTGGAGAAAGGTTTTGAGCA+TGG - chr3_3:1553538-1553557 Msa0437630:intron 40.0%
!!! TGGAGAAAGGTTTTGAGCAT+GGG - chr3_3:1553539-1553558 Msa0437630:intron 40.0%
GCGAAAAAATAATCTCCCTG+AGG + chr3_3:1553592-1553611 None:intergenic 40.0%
CGTCATCAGTAGAATCAGGT+AGG + chr3_3:1538098-1538117 None:intergenic 45.0%
ACACACCGAAGTTGAAGACA+TGG - chr3_3:1538122-1538141 Msa0437630:CDS 45.0%
ATTTCACCCTTGCTTCTTCC+TGG - chr3_3:1538271-1538290 Msa0437630:intron 45.0%
TTTCACCCTTGCTTCTTCCT+GGG - chr3_3:1538272-1538291 Msa0437630:intron 45.0%
CTGAAATAGAGGCTGTTTGC+CGG - chr3_3:1538711-1538730 Msa0437630:CDS 45.0%
TAAGTATGGCGTTGTGTTGG+TGG - chr3_3:1538895-1538914 Msa0437630:intron 45.0%
! CGTTGTGTTGGTGGAAATAG+TGG - chr3_3:1538904-1538923 Msa0437630:intron 45.0%
! GCAGTTCTCTTGGAGTATTC+TGG - chr3_3:1539253-1539272 Msa0437630:intron 45.0%
ATTGCTCCTCAAAGTGCAAG+TGG - chr3_3:1539606-1539625 Msa0437630:intron 45.0%
ACTACACCACTTGCACTTTG+AGG + chr3_3:1539615-1539634 None:intergenic 45.0%
TGTAGTTCTTGATGCACCAG+AGG - chr3_3:1539629-1539648 Msa0437630:intron 45.0%
! AACTTTGGCTTCGAAGTCTG+TGG - chr3_3:1539767-1539786 Msa0437630:intron 45.0%
TCGTGAACTGGAACAAATGC+TGG + chr3_3:1539793-1539812 None:intergenic 45.0%
TTCCAGTTCACGATCCTTCT+CGG - chr3_3:1539800-1539819 Msa0437630:intron 45.0%
! TGGGCACTGTATTCACTAGA+AGG - chr3_3:1539848-1539867 Msa0437630:intron 45.0%
! AGGTTTGAAGCAGATCGCAT+TGG - chr3_3:1539868-1539887 Msa0437630:intron 45.0%
! ACTGAAGGCATACTCCACAT+TGG - chr3_3:1540476-1540495 Msa0437630:intron 45.0%
CTTACTGGTGAGACATCAAG+TGG - chr3_3:1540618-1540637 Msa0437630:intron 45.0%
AGACATCAAGTGGGACACAA+TGG - chr3_3:1540628-1540647 Msa0437630:intron 45.0%
GACATCAAGTGGGACACAAT+GGG - chr3_3:1540629-1540648 Msa0437630:intron 45.0%
! TACAAAGCATTAAGGGGGGT+CGG + chr3_3:1540847-1540866 None:intergenic 45.0%
GAAATCGTTAGACTTCCCCA+TGG + chr3_3:1541025-1541044 None:intergenic 45.0%
AACCACTTCTCAGCTTCATG+AGG + chr3_3:1541417-1541436 None:intergenic 45.0%
AACAAGAACATGCAACTGGG+AGG + chr3_3:1541940-1541959 None:intergenic 45.0%
! CGGTGAAGGTATAACCATTG+AGG + chr3_3:1542175-1542194 None:intergenic 45.0%
AGCACACGATCTCTAACAGT+CGG + chr3_3:1542195-1542214 None:intergenic 45.0%
ATAAATCTGCCACTGGGACA+AGG - chr3_3:1542365-1542384 Msa0437630:intron 45.0%
!! GACAAGGTACTGGTGTCTTA+GGG - chr3_3:1542381-1542400 Msa0437630:intron 45.0%
! GTAGGCAGGTATCGTTCATT+GGG - chr3_3:1542516-1542535 Msa0437630:intron 45.0%
GGTATCGTTCATTGGGTGAT+TGG - chr3_3:1542523-1542542 Msa0437630:intron 45.0%
TGCACCAATTGCATCACACA+TGG - chr3_3:1542785-1542804 Msa0437630:intron 45.0%
GAACGTGCATTAAGTAGTGG+AGG - chr3_3:1542855-1542874 Msa0437630:intron 45.0%
! TTAAGTAGTGGAGGGATCAG+CGG - chr3_3:1542864-1542883 Msa0437630:intron 45.0%
CGGTTACACACAAAAACCGA+CGG - chr3_3:1542884-1542903 Msa0437630:intron 45.0%
GGTTACACACAAAAACCGAC+GGG - chr3_3:1542885-1542904 Msa0437630:intron 45.0%
TGTTTCCAAGCTCATAAGGG+GGG - chr3_3:1542915-1542934 Msa0437630:intron 45.0%
GAATCATATTCCTGCCTACG+TGG - chr3_3:1542937-1542956 Msa0437630:intron 45.0%
! CTTTTTATTGCCACGTAGGC+AGG + chr3_3:1542950-1542969 None:intergenic 45.0%
! TCTGAAACAAACGCCCTCTT+TGG - chr3_3:1543069-1543088 Msa0437630:five_prime_UTR 45.0%
TGAGAGCCATATTAGGTGTG+AGG + chr3_3:1543133-1543152 None:intergenic 45.0%
TGGGTTACGTTCCAAATGTC+CGG + chr3_3:1543186-1543205 None:intergenic 45.0%
GCATCGTTCACCTTAAAAGC+TGG + chr3_3:1543299-1543318 None:intergenic 45.0%
ACCAGTCAATCACGTTCTGA+CGG - chr3_3:1543410-1543429 Msa0437630:intron 45.0%
! TTGATGGTTAGGAGAGTGTG+TGG - chr3_3:1543580-1543599 Msa0437630:intron 45.0%
!! GGAACTTTGAAGTCCACCAT+CGG - chr3_3:1543643-1543662 Msa0437630:intron 45.0%
!! AGGTCATTTTGAAGGGACCA+TGG + chr3_3:1543862-1543881 None:intergenic 45.0%
GAAGAGAAGAGAAAGAGAGG+AGG + chr3_3:1544018-1544037 None:intergenic 45.0%
TGTTGAAGCCTTGAAGGTGA+AGG + chr3_3:1544076-1544095 None:intergenic 45.0%
GAGAGGAAGAAGAAGACTAG+AGG + chr3_3:1544112-1544131 None:intergenic 45.0%
CAGAGAGAGAGAGATAAAGG+AGG + chr3_3:1544180-1544199 None:intergenic 45.0%
TTCTCCTCTCGTCTGAATTC+GGG - chr3_3:1544226-1544245 Msa0437630:intron 45.0%
AACTTTCAGCGGTAAAGGGA+AGG + chr3_3:1544407-1544426 None:intergenic 45.0%
GTGGAACTTTCAGCGGTAAA+GGG + chr3_3:1544411-1544430 None:intergenic 45.0%
AGTGGAACTTTCAGCGGTAA+AGG + chr3_3:1544412-1544431 None:intergenic 45.0%
! CTTCTCCACTTGGGGATTTT+AGG - chr3_3:1544492-1544511 Msa0437630:intron 45.0%
GCGTTCACAACCTCAAAATG+TGG - chr3_3:1545185-1545204 Msa0437630:intron 45.0%
CCAAACATCATGGGAAAAGC+AGG + chr3_3:1545233-1545252 None:intergenic 45.0%
!! CCTGCTTTTCCCATGATGTT+TGG - chr3_3:1545230-1545249 Msa0437630:intron 45.0%
GCTAGAAATCCAAGCTTCTG+CGG - chr3_3:1545314-1545333 Msa0437630:five_prime_UTR 45.0%
TGTGCAAAGAGTGACTCAAG+AGG + chr3_3:1546398-1546417 None:intergenic 45.0%
!!! CAGCTCTAGGTTTAGGCTTT+TGG + chr3_3:1546472-1546491 None:intergenic 45.0%
CAAAAGCCTAAACCTAGAGC+TGG - chr3_3:1546470-1546489 Msa0437630:intron 45.0%
GATCAGTTCTTTCCAGCTCT+AGG + chr3_3:1546485-1546504 None:intergenic 45.0%
GAAAGAACTGATCACCTACG+TGG - chr3_3:1546492-1546511 Msa0437630:intron 45.0%
! AGTTTGTTCGAGAGGTTAGG+TGG - chr3_3:1546611-1546630 Msa0437630:intron 45.0%
GTCACAACCATTACCTAGGA+TGG - chr3_3:1546645-1546664 Msa0437630:intron 45.0%
! TTAGGTGCCATCCTAGGTAA+TGG + chr3_3:1546655-1546674 None:intergenic 45.0%
TTACCTAGGATGGCACCTAA+CGG - chr3_3:1546655-1546674 Msa0437630:intron 45.0%
GAAAGGTCGATTGATCCGTT+AGG + chr3_3:1546673-1546692 None:intergenic 45.0%
ATGGTATGTGACCTCAGTCA+TGG + chr3_3:1547141-1547160 None:intergenic 45.0%
! TTGCAGGAAGAAAGTGTGGT+TGG - chr3_3:1547254-1547273 Msa0437630:intron 45.0%
!!! CACCCAGTGAGATTTTTTCC+GGG - chr3_3:1547300-1547319 Msa0437630:intron 45.0%
AGTTCACCTGTCAACTTTCC+CGG + chr3_3:1547321-1547340 None:intergenic 45.0%
TTAGCAAGTGAGAACCTGCT+CGG - chr3_3:1547340-1547359 Msa0437630:intron 45.0%
GGAAGAAACAGCCATAAGAG+AGG + chr3_3:1547422-1547441 None:intergenic 45.0%
CAACGAAGATTGGAAGTGAC+TGG + chr3_3:1547457-1547476 None:intergenic 45.0%
GTCTAATCCTAGACGTGAAG+AGG + chr3_3:1547624-1547643 None:intergenic 45.0%
! GAGTGTAGAGTTTTCCAGAC+TGG - chr3_3:1547649-1547668 Msa0437630:intron 45.0%
TCACTTACTGATGTCCAGTC+TGG + chr3_3:1547666-1547685 None:intergenic 45.0%
! CTAGCTGAAACCCTTTTCTG+AGG - chr3_3:1547876-1547895 Msa0437630:intron 45.0%
GCAGGTTGTTCCTCAGAAAA+GGG + chr3_3:1547889-1547908 None:intergenic 45.0%
AGCAGGTTGTTCCTCAGAAA+AGG + chr3_3:1547890-1547909 None:intergenic 45.0%
! TGAGAAGGAAATTTGGGGCT+AGG + chr3_3:1547924-1547943 None:intergenic 45.0%
!!! AAGAGCTTGCTTTTGGGGTT+GGG + chr3_3:1548049-1548068 None:intergenic 45.0%
TTAGCGAGGACACTAGTTCA+TGG + chr3_3:1548170-1548189 None:intergenic 45.0%
CATAACATGGAGAGAGCAAC+AGG + chr3_3:1548445-1548464 None:intergenic 45.0%
ACAAACTCGTGCCATGATCT+TGG - chr3_3:1548524-1548543 Msa0437630:intron 45.0%
TTAACTAGGAGAGGTTCAGC+TGG - chr3_3:1548678-1548697 Msa0437630:intron 45.0%
TTGGAGAAACCTGTGTGTAC+GGG + chr3_3:1548752-1548771 None:intergenic 45.0%
GTTGGAGAAACCTGTGTGTA+CGG + chr3_3:1548753-1548772 None:intergenic 45.0%
CGGCGAATACTACAATGACA+AGG + chr3_3:1548793-1548812 None:intergenic 45.0%
CAGAAGACATGCATGAAGAG+AGG - chr3_3:1548877-1548896 Msa0437630:intron 45.0%
ATGCAAGCTGTTGAAGCCAT+TGG - chr3_3:1548900-1548919 Msa0437630:intron 45.0%
AGAGGTCTATAGGGTCTCTA+AGG + chr3_3:1549021-1549040 None:intergenic 45.0%
ACCCCTATGTGAAATCTGAG+AGG + chr3_3:1549039-1549058 None:intergenic 45.0%
ATTATCTGTGCCTGTGATGC+AGG - chr3_3:1549201-1549220 Msa0437630:intron 45.0%
ATGCAGGCCACTCAATTTCT+TGG - chr3_3:1549217-1549236 Msa0437630:intron 45.0%
ATACATGCAGGTGAATTGGG+GGG + chr3_3:1549392-1549411 None:intergenic 45.0%
CATACATGCAGGTGAATTGG+GGG + chr3_3:1549393-1549412 None:intergenic 45.0%
CTACAATTCTCGGTGATACG+TGG - chr3_3:1549440-1549459 Msa0437630:intron 45.0%
GATGAAAATGCAAGGACGCT+AGG - chr3_3:1549743-1549762 Msa0437630:five_prime_UTR 45.0%
! TTTATTCGGTGGCATTCACC+TGG - chr3_3:1550643-1550662 Msa0437630:intron 45.0%
TCTAAGAGAATGTCGGAGCA+CGG - chr3_3:1550769-1550788 Msa0437630:intron 45.0%
CCCTAGTCACTATTGCAACT+AGG + chr3_3:1551550-1551569 None:intergenic 45.0%
AGCCATAGTGCACAGATAAG+TGG - chr3_3:1551675-1551694 Msa0437630:intron 45.0%
TGGTTGCTTGAGAGACTAAG+GGG - chr3_3:1551802-1551821 Msa0437630:five_prime_UTR 45.0%
AGAGACTAAGGGGGATGTAT+TGG - chr3_3:1551812-1551831 Msa0437630:five_prime_UTR 45.0%
ACGAAGAGAGAAAGGAGAGA+GGG - chr3_3:1552461-1552480 Msa0437630:five_prime_UTR 45.0%
!! TCTGCTTTGAGGCCTTTACA+AGG - chr3_3:1553043-1553062 Msa0437630:intron 45.0%
GGGAACAAGCTTGAAAGAAG+AGG - chr3_3:1553313-1553332 Msa0437630:intron 45.0%
AGCTAACCAGTCTTGGAGAA+AGG - chr3_3:1553526-1553545 Msa0437630:intron 45.0%
!!! GGAGAAAGGTTTTGAGCATG+GGG - chr3_3:1553540-1553559 Msa0437630:intron 45.0%
AGCATGGGGAATCTTCTCAA+TGG - chr3_3:1553554-1553573 Msa0437630:intron 45.0%
GATTACCACTCACTCTATCG+TGG + chr3_3:1553616-1553635 None:intergenic 45.0%
AATCACTATGCAGCTCGTAG+CGG - chr3_3:1553632-1553651 Msa0437630:five_prime_UTR 45.0%
TGACCTACGTGTTGCACTTT+CGG - chr3_3:1553709-1553728 Msa0437630:five_prime_UTR 45.0%
!! TAAATAGTAATATAATTAAA+AGG - chr3_3:1546024-1546043 Msa0437630:intron 5.0%
!! TAAATATTATACAATAAATT+TGG + chr3_3:1548109-1548128 None:intergenic 5.0%
!!! TATATCATTTTAATTATATT+AGG + chr3_3:1548342-1548361 None:intergenic 5.0%
AGGTAGGATCTTCGTCTTGC+CGG + chr3_3:1538082-1538101 None:intergenic 50.0%
GACCATCAGACATCCAAAGC+CGG + chr3_3:1538733-1538752 None:intergenic 50.0%
GGTAAAAGGGGCAGTTCTCT+TGG - chr3_3:1539243-1539262 Msa0437630:intron 50.0%
! GTAGGTTGAGGTTTGGGTTC+AGG - chr3_3:1539379-1539398 Msa0437630:intron 50.0%
!! CTCAACAGTTTGCTAGCCTC+TGG + chr3_3:1539648-1539667 None:intergenic 50.0%
TTCCGAGAAGGATCGTGAAC+TGG + chr3_3:1539805-1539824 None:intergenic 50.0%
! AGCAGATCGCATTGGTAGTC+AGG - chr3_3:1539876-1539895 Msa0437630:intron 50.0%
TCTTACCACTTCCACCCCTA+GGG - chr3_3:1540111-1540130 Msa0437630:intron 50.0%
TCAAGATGTCCCTTCCCTAG+GGG + chr3_3:1540128-1540147 None:intergenic 50.0%
CTCAAGATGTCCCTTCCCTA+GGG + chr3_3:1540129-1540148 None:intergenic 50.0%
TCTCAAGATGTCCCTTCCCT+AGG + chr3_3:1540130-1540149 None:intergenic 50.0%
CAGAACACTCCCCTTTGATG+AGG - chr3_3:1540548-1540567 Msa0437630:intron 50.0%
CACCTCATGAAGCTGAGAAG+TGG - chr3_3:1541412-1541431 Msa0437630:intron 50.0%
CGATCTCTAACAGTCGGTGA+AGG + chr3_3:1542189-1542208 None:intergenic 50.0%
!! GGACAAGGTACTGGTGTCTT+AGG - chr3_3:1542380-1542399 Msa0437630:intron 50.0%
! CGTAGGCAGGTATCGTTCAT+TGG - chr3_3:1542515-1542534 Msa0437630:intron 50.0%
TGATTCCCCCCTTATGAGCT+TGG + chr3_3:1542923-1542942 None:intergenic 50.0%
ACGCCACCTCACACCTAATA+TGG - chr3_3:1543124-1543143 Msa0437630:intron 50.0%
GAGCCATATTAGGTGTGAGG+TGG + chr3_3:1543130-1543149 None:intergenic 50.0%
ACCTACGTCACTCCTAGAAC+CGG - chr3_3:1543164-1543183 Msa0437630:intron 50.0%
CACTCCTAGAACCGGACATT+TGG - chr3_3:1543172-1543191 Msa0437630:intron 50.0%
CGTTCCAAATGTCCGGTTCT+AGG + chr3_3:1543179-1543198 None:intergenic 50.0%
GTGAAACTTAGGTGAGGGTG+TGG - chr3_3:1543549-1543568 Msa0437630:intron 50.0%
TCTTTCCAGTATGCCGATGG+TGG + chr3_3:1543659-1543678 None:intergenic 50.0%
GAATCCCGAATTCAGACGAG+AGG + chr3_3:1544233-1544252 None:intergenic 50.0%
TTTGCTTTGCCGCAGAAGCT+TGG + chr3_3:1545326-1545345 None:intergenic 50.0%
CTTGCAAGCGAGACACTGAA+TGG - chr3_3:1545815-1545834 Msa0437630:intron 50.0%
TTCGAGAGGTTAGGTGGTGT+TGG - chr3_3:1546617-1546636 Msa0437630:intron 50.0%
TCGAGAGGTTAGGTGGTGTT+GGG - chr3_3:1546618-1546637 Msa0437630:intron 50.0%
AATCCTAGACGTGAAGAGGG+AGG + chr3_3:1547620-1547639 None:intergenic 50.0%
! CGTCCTCTCTGGTTCCTATT+GGG + chr3_3:1547706-1547725 None:intergenic 50.0%
! TCGTCCTCTCTGGTTCCTAT+TGG + chr3_3:1547707-1547726 None:intergenic 50.0%
! TTTGGGGCTAGGTTGAGTGA+AGG + chr3_3:1547913-1547932 None:intergenic 50.0%
! TGAAGGAGGGGGTGTGAAAA+GGG + chr3_3:1547958-1547977 None:intergenic 50.0%
! TTGAAGGAGGGGGTGTGAAA+AGG + chr3_3:1547959-1547978 None:intergenic 50.0%
!!! CTTGCTTTTGGGGTTGGGTT+AGG + chr3_3:1548044-1548063 None:intergenic 50.0%
!!! CAAGAGCTTGCTTTTGGGGT+TGG + chr3_3:1548050-1548069 None:intergenic 50.0%
CAACCCCAAAAGCAAGCTCT+TGG - chr3_3:1548048-1548067 Msa0437630:intron 50.0%
!! ACGCCAAGAGCTTGCTTTTG+GGG + chr3_3:1548054-1548073 None:intergenic 50.0%
!! CACGCCAAGAGCTTGCTTTT+GGG + chr3_3:1548055-1548074 None:intergenic 50.0%
!! TCACGCCAAGAGCTTGCTTT+TGG + chr3_3:1548056-1548075 None:intergenic 50.0%
AAAAGCAAGCTCTTGGCGTG+AGG - chr3_3:1548055-1548074 Msa0437630:intron 50.0%
AAAGCAAGCTCTTGGCGTGA+GGG - chr3_3:1548056-1548075 Msa0437630:intron 50.0%
TGGAGAAACCTGTGTGTACG+GGG + chr3_3:1548751-1548770 None:intergenic 50.0%
TCCAACACCCAGACACCATT+TGG - chr3_3:1548767-1548786 Msa0437630:intron 50.0%
GACAAGGCCAAATGGTGTCT+GGG + chr3_3:1548777-1548796 None:intergenic 50.0%
TGACAAGGCCAAATGGTGTC+TGG + chr3_3:1548778-1548797 None:intergenic 50.0%
!! AATCGGTGCTGCAGTGGTAT+AGG - chr3_3:1549095-1549114 Msa0437630:intron 50.0%
AATTGAGTGGCCTGCATCAC+AGG + chr3_3:1549214-1549233 None:intergenic 50.0%
TACATGCAGGTGAATTGGGG+GGG + chr3_3:1549391-1549410 None:intergenic 50.0%
TTCTCGGTGATACGTGGAAG+TGG - chr3_3:1549446-1549465 Msa0437630:intron 50.0%
!! CCATGTGGATTGGAATCCAC+TGG + chr3_3:1550442-1550461 None:intergenic 50.0%
! CCAGTGGATTCCAATCCACA+TGG - chr3_3:1550439-1550458 Msa0437630:intron 50.0%
GTGGCATTCACCTGGAGATT+GGG - chr3_3:1550651-1550670 Msa0437630:intron 50.0%
TCATCTGCTTCCCAATCTCC+AGG + chr3_3:1550664-1550683 None:intergenic 50.0%
TGATGCTGATCCACTGCTCT+CGG + chr3_3:1550692-1550711 None:intergenic 50.0%
! AAAGATAGTTGGCCTCCACG+TGG - chr3_3:1550739-1550758 Msa0437630:intron 50.0%
! AAGATAGTTGGCCTCCACGT+GGG - chr3_3:1550740-1550759 Msa0437630:intron 50.0%
TTAGAAAGCTTCCCACGTGG+AGG + chr3_3:1550754-1550773 None:intergenic 50.0%
CTCTTAGAAAGCTTCCCACG+TGG + chr3_3:1550757-1550776 None:intergenic 50.0%
TGTCGGAGCACGGAAATTTG+TGG - chr3_3:1550779-1550798 Msa0437630:intron 50.0%
TCTTGGAATGCTGTCCTGCT+CGG - chr3_3:1551645-1551664 Msa0437630:intron 50.0%
TTATGGCAGGCAAGCCAACA+TGG + chr3_3:1551753-1551772 None:intergenic 50.0%
GGCTTGCCTGCCATAATGAA+AGG - chr3_3:1551757-1551776 Msa0437630:intron 50.0%
GGTTGCTTGAGAGACTAAGG+GGG - chr3_3:1551803-1551822 Msa0437630:five_prime_UTR 50.0%
GTGAGAGAGAGAGAGAAGAG+AGG - chr3_3:1552395-1552414 Msa0437630:five_prime_UTR 50.0%
AGAGAGAAGAGAGGAGAGAG+AGG - chr3_3:1552404-1552423 Msa0437630:five_prime_UTR 50.0%
GAGAGAAGAGAGGAGAGAGA+GGG - chr3_3:1552405-1552424 Msa0437630:five_prime_UTR 50.0%
GACGAAGAGAGAAAGGAGAG+AGG - chr3_3:1552460-1552479 Msa0437630:five_prime_UTR 50.0%
CGAAGAGAGAAAGGAGAGAG+GGG - chr3_3:1552462-1552481 Msa0437630:five_prime_UTR 50.0%
GAAGAGAGAAAGGAGAGAGG+GGG - chr3_3:1552463-1552482 Msa0437630:five_prime_UTR 50.0%
AAGAGAGAAAGGAGAGAGGG+GGG - chr3_3:1552464-1552483 Msa0437630:five_prime_UTR 50.0%
CTCAAAGCAGATGCCATGGT+AGG + chr3_3:1553034-1553053 None:intergenic 50.0%
CTACCATGGCATCTGCTTTG+AGG - chr3_3:1553032-1553051 Msa0437630:intron 50.0%
GCAAGCTTATACGAGCACCA+CGG - chr3_3:1553240-1553259 Msa0437630:intron 50.0%
! CTCCAAGACTGGTTAGCTGT+GGG + chr3_3:1553524-1553543 None:intergenic 50.0%
! TCTCCAAGACTGGTTAGCTG+TGG + chr3_3:1553525-1553544 None:intergenic 50.0%
ATGGTCACGAACCAATCCTC+AGG - chr3_3:1553573-1553592 Msa0437630:five_prime_UTR 50.0%
TGGTCACGAACCAATCCTCA+GGG - chr3_3:1553574-1553593 Msa0437630:five_prime_UTR 50.0%
! CAACCGAAAGTGCAACACGT+AGG + chr3_3:1553715-1553734 None:intergenic 50.0%
GATCTTCGTCTTGCCGGTGT+TGG + chr3_3:1538076-1538095 None:intergenic 55.0%
CCGTTCCCAGGAAGAAGCAA+GGG + chr3_3:1538280-1538299 None:intergenic 55.0%
CCCTTGCTTCTTCCTGGGAA+CGG - chr3_3:1538277-1538296 Msa0437630:intron 55.0%
ACCGTTCCCAGGAAGAAGCA+AGG + chr3_3:1538281-1538300 None:intergenic 55.0%
ATCAAACACGCACCGTTCCC+AGG + chr3_3:1538292-1538311 None:intergenic 55.0%
!! TAGAGGCTGTTTGCCGGCTT+TGG - chr3_3:1538717-1538736 Msa0437630:CDS 55.0%
!! TGCCGGCTTTGGATGTCTGA+TGG - chr3_3:1538728-1538747 Msa0437630:CDS 55.0%
TCTTGGCATCCAGATGACGC+AGG - chr3_3:1539424-1539443 Msa0437630:intron 55.0%
ACGCAGGCAAGCCTGCAAAT+TGG - chr3_3:1539440-1539459 Msa0437630:intron 55.0%
GTCTTACCACTTCCACCCCT+AGG - chr3_3:1540110-1540129 Msa0437630:intron 55.0%
CATTAAGGGGGGTCGGATGT+GGG + chr3_3:1540840-1540859 None:intergenic 55.0%
GCTGCCACAGGCCAAAACAA+TGG + chr3_3:1542123-1542142 None:intergenic 55.0%
! CCAGGATTTTCAGCTGCCAC+AGG + chr3_3:1542135-1542154 None:intergenic 55.0%
CCTGTGGCAGCTGAAAATCC+TGG - chr3_3:1542132-1542151 Msa0437630:intron 55.0%
ACACCAGTACCTTGTCCCAG+TGG + chr3_3:1542377-1542396 None:intergenic 55.0%
! TGGGGGACTCGACTTTTGTG+TGG + chr3_3:1542822-1542841 None:intergenic 55.0%
!! TCCGGTTCTAGGAGTGACGT+AGG + chr3_3:1543168-1543187 None:intergenic 55.0%
GCCGTCAGAACGTGATTGAC+TGG + chr3_3:1543414-1543433 None:intergenic 55.0%
CGTTCTGACGGCCCAAGTTT+AGG - chr3_3:1543422-1543441 Msa0437630:intron 55.0%
GAAGTCCACCATCGGCATAC+TGG - chr3_3:1543651-1543670 Msa0437630:intron 55.0%
! GATCCGTTAGGTGCCATCCT+AGG + chr3_3:1546661-1546680 None:intergenic 55.0%
TGGCCCAATAGGAACCAGAG+AGG - chr3_3:1547700-1547719 Msa0437630:intron 55.0%
! GCTAGGTTGAGTGAAGGAGC+AGG + chr3_3:1547907-1547926 None:intergenic 55.0%
TATGCATGCCCCGTACACAC+AGG - chr3_3:1548740-1548759 Msa0437630:intron 55.0%
GCCAAATGGTGTCTGGGTGT+TGG + chr3_3:1548771-1548790 None:intergenic 55.0%
ACATGCAGGTGAATTGGGGG+GGG + chr3_3:1549390-1549409 None:intergenic 55.0%
GGTGGCATTCACCTGGAGAT+TGG - chr3_3:1550650-1550669 Msa0437630:intron 55.0%
GATGATGATCCCGAGAGCAG+TGG - chr3_3:1550679-1550698 Msa0437630:intron 55.0%
GATGCTGATCCACTGCTCTC+GGG + chr3_3:1550691-1550710 None:intergenic 55.0%
CTCACCTGCTCTTCCTGCTT+CGG - chr3_3:1550819-1550838 Msa0437630:intron 55.0%
TGTTCCGAAGCAGGAAGAGC+AGG + chr3_3:1550826-1550845 None:intergenic 55.0%
AGAGGCTTCTGTTCCGAAGC+AGG + chr3_3:1550835-1550854 None:intergenic 55.0%
AGAGAGGGAGAGAGAGAGAG+AGG - chr3_3:1552420-1552439 Msa0437630:five_prime_UTR 55.0%
GAGAGGGAGAGAGAGAGAGA+GGG - chr3_3:1552421-1552440 Msa0437630:five_prime_UTR 55.0%
GGAGAGAGAGAGAGAGGGAA+TGG - chr3_3:1552426-1552445 Msa0437630:five_prime_UTR 55.0%
AGGCCTCAAAGCAGATGCCA+TGG + chr3_3:1553038-1553057 None:intergenic 55.0%
! CAAGACTGGTTAGCTGTGGG+AGG + chr3_3:1553521-1553540 None:intergenic 55.0%
CTCCCACAGCTAACCAGTCT+TGG - chr3_3:1553519-1553538 Msa0437630:intron 55.0%
TCGCTCCACGATAGAGTGAG+TGG - chr3_3:1553608-1553627 Msa0437630:five_prime_UTR 55.0%
GCGTCATCCTCCACCAACAC+CGG - chr3_3:1538060-1538079 Msa0437630:CDS 60.0%
! CTTCGTCTTGCCGGTGTTGG+TGG + chr3_3:1538073-1538092 None:intergenic 60.0%
ACCACTTCCACCCCTAGGGA+AGG - chr3_3:1540115-1540134 Msa0437630:intron 60.0%
CCACTTCCACCCCTAGGGAA+GGG - chr3_3:1540116-1540135 Msa0437630:intron 60.0%
AGATGTCCCTTCCCTAGGGG+TGG + chr3_3:1540125-1540144 None:intergenic 60.0%
GCATTAAGGGGGGTCGGATG+TGG + chr3_3:1540841-1540860 None:intergenic 60.0%
CTGCCACTGGGACAAGGTAC+TGG - chr3_3:1542371-1542390 Msa0437630:intron 60.0%
CAGCCTCCCTCTTCACGTCT+AGG - chr3_3:1547614-1547633 Msa0437630:intron 60.0%
TGAATTGGGGGGGGGTGGTT+AGG + chr3_3:1549381-1549400 None:intergenic 60.0%
CATGCAGGTGAATTGGGGGG+GGG + chr3_3:1549389-1549408 None:intergenic 60.0%
AGAGAAAGGAGAGAGGGGGG+AGG - chr3_3:1552467-1552486 Msa0437630:intron 60.0%
GAGAAAGGAGAGAGGGGGGA+GGG - chr3_3:1552468-1552487 Msa0437630:intron 60.0%
AGAAAGGAGAGAGGGGGGAG+GGG - chr3_3:1552469-1552488 Msa0437630:intron 60.0%
GGGAGGGGAGAGAGAGAGAA+TGG - chr3_3:1552484-1552503 Msa0437630:intron 60.0%
GGTGGCTACTGCCTTCAGAG+CGG - chr3_3:1552937-1552956 Msa0437630:intron 60.0%
!! CGTCTTGCCGGTGTTGGTGG+AGG + chr3_3:1538070-1538089 None:intergenic 65.0%
GCAGGCTTGCCTGCGTCATC+TGG + chr3_3:1539436-1539455 None:intergenic 65.0%
CCCTTCCCTAGGGGTGGAAG+TGG + chr3_3:1540119-1540138 None:intergenic 65.0%
GGGGGGTCGGATGTGGGAAA+AGG + chr3_3:1540834-1540853 None:intergenic 65.0%
AGCAATCACCGCGGGGGAGA+GGG + chr3_3:1551517-1551536 None:intergenic 65.0%
TCTCCCCCGCGGTGATTGCT+GGG - chr3_3:1551517-1551536 Msa0437630:intron 65.0%
CGTGTCAGCTGCCGCTCTGA+AGG + chr3_3:1552951-1552970 None:intergenic 65.0%
GCAGGTGAATTGGGGGGGGG+TGG + chr3_3:1549386-1549405 None:intergenic 70.0%
ATAGTCCCCCCTCTCCCCCG+CGG - chr3_3:1551506-1551525 Msa0437630:intron 70.0%
AATCACCGCGGGGGAGAGGG+GGG + chr3_3:1551514-1551533 None:intergenic 70.0%
CAATCACCGCGGGGGAGAGG+GGG + chr3_3:1551515-1551534 None:intergenic 70.0%
GCAATCACCGCGGGGGAGAG+GGG + chr3_3:1551516-1551535 None:intergenic 70.0%
CAGCAATCACCGCGGGGGAG+AGG + chr3_3:1551518-1551537 None:intergenic 70.0%
CTCTCCCCCGCGGTGATTGC+TGG - chr3_3:1551516-1551535 Msa0437630:intron 70.0%
TCCGCCCAGCAATCACCGCG+GGG + chr3_3:1551524-1551543 None:intergenic 70.0%
GTCCGCCCAGCAATCACCGC+GGG + chr3_3:1551525-1551544 None:intergenic 70.0%
GGTCCGCCCAGCAATCACCG+CGG + chr3_3:1551526-1551545 None:intergenic 70.0%
CCGCCCAGCAATCACCGCGG+GGG + chr3_3:1551523-1551542 None:intergenic 75.0%
CCCCCGCGGTGATTGCTGGG+CGG - chr3_3:1551520-1551539 Msa0437630:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 1537915 1553814 1537915 ID=Msa0437630;Name=Msa0437630
chr3_3 mRNA 1537915 1553814 1537915 ID=Msa0437630-mRNA-1;Parent=Msa0437630;Name=Msa0437630-mRNA-1;_AED=0.13;_eAED=0.13;_QI=2038|1|1|1|0.85|0.90|22|66|329
chr3_3 exon 1537915 1538274 1537915 ID=Msa0437630-mRNA-1:exon:178;Parent=Msa0437630-mRNA-1
chr3_3 exon 1538383 1538594 1538383 ID=Msa0437630-mRNA-1:exon:177;Parent=Msa0437630-mRNA-1
chr3_3 exon 1538665 1538842 1538665 ID=Msa0437630-mRNA-1:exon:176;Parent=Msa0437630-mRNA-1
chr3_3 exon 1540847 1541159 1540847 ID=Msa0437630-mRNA-1:exon:175;Parent=Msa0437630-mRNA-1
chr3_3 exon 1541695 1541734 1541695 ID=Msa0437630-mRNA-1:exon:174;Parent=Msa0437630-mRNA-1
chr3_3 exon 1542797 1542868 1542797 ID=Msa0437630-mRNA-1:exon:173;Parent=Msa0437630-mRNA-1
chr3_3 exon 1542968 1543097 1542968 ID=Msa0437630-mRNA-1:exon:172;Parent=Msa0437630-mRNA-1
chr3_3 exon 1544383 1544469 1544383 ID=Msa0437630-mRNA-1:exon:171;Parent=Msa0437630-mRNA-1
chr3_3 exon 1544581 1544670 1544581 ID=Msa0437630-mRNA-1:exon:170;Parent=Msa0437630-mRNA-1
chr3_3 exon 1545006 1545139 1545006 ID=Msa0437630-mRNA-1:exon:169;Parent=Msa0437630-mRNA-1
chr3_3 exon 1545268 1545396 1545268 ID=Msa0437630-mRNA-1:exon:168;Parent=Msa0437630-mRNA-1
chr3_3 exon 1549495 1549587 1549495 ID=Msa0437630-mRNA-1:exon:167;Parent=Msa0437630-mRNA-1
chr3_3 exon 1549718 1549827 1549718 ID=Msa0437630-mRNA-1:exon:166;Parent=Msa0437630-mRNA-1
chr3_3 exon 1550281 1550392 1550281 ID=Msa0437630-mRNA-1:exon:165;Parent=Msa0437630-mRNA-1
chr3_3 exon 1551027 1551246 1551027 ID=Msa0437630-mRNA-1:exon:164;Parent=Msa0437630-mRNA-1
chr3_3 exon 1551775 1551946 1551775 ID=Msa0437630-mRNA-1:exon:163;Parent=Msa0437630-mRNA-1
chr3_3 exon 1552029 1552126 1552029 ID=Msa0437630-mRNA-1:exon:162;Parent=Msa0437630-mRNA-1
chr3_3 exon 1552216 1552292 1552216 ID=Msa0437630-mRNA-1:exon:161;Parent=Msa0437630-mRNA-1
chr3_3 exon 1552371 1552485 1552371 ID=Msa0437630-mRNA-1:exon:160;Parent=Msa0437630-mRNA-1
chr3_3 exon 1552963 1553026 1552963 ID=Msa0437630-mRNA-1:exon:159;Parent=Msa0437630-mRNA-1
chr3_3 exon 1553431 1553474 1553431 ID=Msa0437630-mRNA-1:exon:158;Parent=Msa0437630-mRNA-1
chr3_3 exon 1553571 1553814 1553571 ID=Msa0437630-mRNA-1:exon:157;Parent=Msa0437630-mRNA-1
chr3_3 five_prime_UTR 1553571 1553814 1553571 ID=Msa0437630-mRNA-1:five_prime_utr;Parent=Msa0437630-mRNA-1
chr3_3 five_prime_UTR 1553431 1553474 1553431 ID=Msa0437630-mRNA-1:five_prime_utr;Parent=Msa0437630-mRNA-1
chr3_3 five_prime_UTR 1552963 1553026 1552963 ID=Msa0437630-mRNA-1:five_prime_utr;Parent=Msa0437630-mRNA-1
chr3_3 five_prime_UTR 1552371 1552485 1552371 ID=Msa0437630-mRNA-1:five_prime_utr;Parent=Msa0437630-mRNA-1
chr3_3 five_prime_UTR 1552216 1552292 1552216 ID=Msa0437630-mRNA-1:five_prime_utr;Parent=Msa0437630-mRNA-1
chr3_3 five_prime_UTR 1552029 1552126 1552029 ID=Msa0437630-mRNA-1:five_prime_utr;Parent=Msa0437630-mRNA-1
chr3_3 five_prime_UTR 1551775 1551946 1551775 ID=Msa0437630-mRNA-1:five_prime_utr;Parent=Msa0437630-mRNA-1
chr3_3 five_prime_UTR 1551027 1551246 1551027 ID=Msa0437630-mRNA-1:five_prime_utr;Parent=Msa0437630-mRNA-1
chr3_3 five_prime_UTR 1550281 1550392 1550281 ID=Msa0437630-mRNA-1:five_prime_utr;Parent=Msa0437630-mRNA-1
chr3_3 five_prime_UTR 1549718 1549827 1549718 ID=Msa0437630-mRNA-1:five_prime_utr;Parent=Msa0437630-mRNA-1
chr3_3 five_prime_UTR 1549495 1549587 1549495 ID=Msa0437630-mRNA-1:five_prime_utr;Parent=Msa0437630-mRNA-1
chr3_3 five_prime_UTR 1545268 1545396 1545268 ID=Msa0437630-mRNA-1:five_prime_utr;Parent=Msa0437630-mRNA-1
chr3_3 five_prime_UTR 1545006 1545139 1545006 ID=Msa0437630-mRNA-1:five_prime_utr;Parent=Msa0437630-mRNA-1
chr3_3 five_prime_UTR 1544581 1544670 1544581 ID=Msa0437630-mRNA-1:five_prime_utr;Parent=Msa0437630-mRNA-1
chr3_3 five_prime_UTR 1544383 1544469 1544383 ID=Msa0437630-mRNA-1:five_prime_utr;Parent=Msa0437630-mRNA-1
chr3_3 five_prime_UTR 1542968 1543097 1542968 ID=Msa0437630-mRNA-1:five_prime_utr;Parent=Msa0437630-mRNA-1
chr3_3 five_prime_UTR 1542797 1542868 1542797 ID=Msa0437630-mRNA-1:five_prime_utr;Parent=Msa0437630-mRNA-1
chr3_3 five_prime_UTR 1541695 1541734 1541695 ID=Msa0437630-mRNA-1:five_prime_utr;Parent=Msa0437630-mRNA-1
chr3_3 five_prime_UTR 1541153 1541159 1541153 ID=Msa0437630-mRNA-1:five_prime_utr;Parent=Msa0437630-mRNA-1
chr3_3 CDS 1540847 1541152 1540847 ID=Msa0437630-mRNA-1:cds;Parent=Msa0437630-mRNA-1
chr3_3 CDS 1538665 1538842 1538665 ID=Msa0437630-mRNA-1:cds;Parent=Msa0437630-mRNA-1
chr3_3 CDS 1538383 1538594 1538383 ID=Msa0437630-mRNA-1:cds;Parent=Msa0437630-mRNA-1
chr3_3 CDS 1537981 1538274 1537981 ID=Msa0437630-mRNA-1:cds;Parent=Msa0437630-mRNA-1
chr3_3 three_prime_UTR 1537915 1537980 1537915 ID=Msa0437630-mRNA-1:three_prime_utr;Parent=Msa0437630-mRNA-1
Gene Sequence

>Msa0437630

ATGGCTTTGGTGCTATTAGATATGTCAGCATTTAAAGCAGCGAATCCAGATGCTACTTTTGAAGACTTTATTCGGTGGCATTCACCTGGAGATTGGGAAGCAGATGATGATCCCGAGAGCAGTGGATCAGCATCATCTGATTCTCTTGAAAAAAATAAGTTGAAAGATAGTTGGCCTCCACGTGGGAAGCTTTCTAAGAGAATGTCGGAGCACGGAAATTTGTGGAGAAAGATTTGGAATAGCTCACCTGCTCTTCCTGCTTCGGAACAGAAGCCTCTTCTTGATCCAAATAGAGAAGGAGAAAAAGTTCTTCATTATCTTGAAACCTTACGACCACATCAATTGCTTGAACAAATGGTGGCTACTGCCTTCAGAGCGGCAGCTGACACGCTAAGTCAGACTAGTTATGGAGAACTGAAACAGATGGAGACTAAGATTCAACAACTTTATCCTACCATGGCATCTGCTTTGAGGCCTTTACAAGTAAATCGATTGTCTGCAGACAGTGAGACTATTGAAGACTTCAGACGATTGTGTGTTGTTTTTGAACGTGTTGAAAAATTACTGACTGTTGCAGCTTCTCTTCATCGCAAGCTTATACGAGCACCACGGCTCTCAAGAGAAATTTTTAATGATTACTACAACTTTTATATTCCAACAATGGGAACAAGCTTGAAAGAAGAGGTTGTTGAAAAGGAATTTGACAAGAAACAAGCGGTAAGGAACCATGAAAGAGAAGTGTTGTCAAATATGTTTGTTCCTCCCACAGCTAACCAGTCTTGGAGAAAGGTTTTGAGCATGGGGAATCTTCTCAATGGTCACGAACCAATCCTCAGGGAGATTATTTTTTCGCTCCACGATAGAGTGAGTGGTAATCACTATGCAGCTCGTAGCGGTAGTGTTTCTCAAGAAATTGAAACTTACAGAATGTATATATGTGGAACATCTAATGACCTACGTGTTGCACTTTCGGTTGTCTCGTGTGATTAA
Protein sequence

>Msa0437630

MALVLLDMSAFKAANPDATFEDFIRWHSPGDWEADDDPESSGSASSDSLEKNKLKDSWPPRGKLSKRMSEHGNLWRKIWNSSPALPASEQKPLLDPNREGEKVLHYLETLRPHQLLEQMVATAFRAAADTLSQTSYGELKQMETKIQQLYPTMASALRPLQVNRLSADSETIEDFRRLCVVFERVEKLLTVAASLHRKLIRAPRLSREIFNDYYNFYIPTMGTSLKEEVVEKEFDKKQAVRNHEREVLSNMFVPPTANQSWRKVLSMGNLLNGHEPILREIIFSLHDRVSGNHYAARSGSVSQEIETYRMYICGTSNDLRVALSVVSCD*