AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0439140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0439140 MtrunA17_Chr7g0215451 97.854 233 5 0 1 233 114 346 1.22e-168 468
Msa0439140 MtrunA17_Chr6g0460121 73.913 230 60 0 1 230 76 305 3.58e-126 359
Msa0439140 MtrunA17_Chr6g0457581 73.478 230 61 0 1 230 113 342 2.28e-125 358
Msa0439140 MtrunA17_Chr1g0209741 61.161 224 87 0 1 224 153 376 3.88e-98 291
Msa0439140 MtrunA17_Chr5g0423541 60.619 226 89 0 1 226 167 392 6.79e-98 290
Msa0439140 MtrunA17_Chr1g0195501 50.220 227 113 0 1 227 67 293 7.63e-79 239
Msa0439140 MtrunA17_Chr6g0484431 66.061 165 55 1 1 164 117 281 5.86e-78 236
Msa0439140 MtrunA17_Chr7g0269371 48.230 226 117 0 1 226 66 291 8.31e-77 235
Msa0439140 MtrunA17_Chr1g0212901 47.345 226 119 0 1 226 69 294 5.54e-68 211
Msa0439140 MtrunA17_Chr4g0047891 42.601 223 128 0 1 223 99 321 1.15e-62 198
Msa0439140 MtrunA17_Chr1g0199771 36.957 230 141 4 1 228 91 318 1.98e-49 164
Msa0439140 MtrunA17_Chr4g0071671 36.910 233 140 3 5 233 93 322 2.80e-48 161
Msa0439140 MtrunA17_Chr6g0479331 35.683 227 132 8 1 223 172 388 1.05e-27 108
Msa0439140 MtrunA17_Chr3g0140391 33.624 229 138 6 1 225 153 371 4.36e-27 107
Msa0439140 MtrunA17_Chr6g0484421 70.968 62 18 0 165 226 1 62 1.33e-25 95.1
Msa0439140 MtrunA17_Chr1g0209761 56.061 66 29 0 158 223 12 77 1.88e-17 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0439140 AT5G16120.3 75.431 232 57 0 1 232 115 346 2.70e-129 369
Msa0439140 AT5G16120.1 75.431 232 57 0 1 232 115 346 2.70e-129 369
Msa0439140 AT5G16120.4 75.431 232 57 0 1 232 147 378 8.44e-129 369
Msa0439140 AT5G16120.2 75.431 232 57 0 1 232 133 364 8.54e-129 369
Msa0439140 AT1G77420.1 56.951 223 96 0 1 223 154 376 2.24e-90 271
Msa0439140 AT3G62860.2 48.879 223 114 0 1 223 24 246 6.90e-77 234
Msa0439140 AT3G62860.1 48.879 223 114 0 1 223 67 289 2.43e-76 234
Msa0439140 AT2G47630.2 50.224 223 111 0 1 223 24 246 1.20e-75 231
Msa0439140 AT2G47630.3 50.224 223 111 0 1 223 44 266 1.77e-75 231
Msa0439140 AT2G47630.1 50.224 223 111 0 1 223 69 291 4.16e-75 231
Msa0439140 AT2G39420.1 50.673 223 110 0 1 223 70 292 2.27e-73 226
Msa0439140 AT1G11090.1 46.667 225 120 0 1 225 90 314 1.45e-71 221
Msa0439140 AT2G39400.1 48.230 226 117 0 1 226 64 289 2.99e-67 210
Msa0439140 AT2G39410.2 47.345 226 119 0 1 226 70 295 1.03e-66 209
Msa0439140 AT3G55180.1 46.018 226 122 0 1 226 65 290 2.07e-64 202
Msa0439140 AT3G55190.1 43.049 223 126 1 1 222 70 292 2.84e-57 184
Msa0439140 AT5G14980.1 35.683 227 144 2 1 226 91 316 6.18e-52 171
Msa0439140 AT5G19290.1 34.978 223 143 2 1 222 92 313 3.99e-50 166
Msa0439140 AT1G52760.1 35.897 234 143 3 2 231 99 329 3.96e-46 156
Msa0439140 AT2G39400.2 44.848 165 91 0 1 165 64 228 6.72e-40 138
Msa0439140 AT1G73480.1 35.088 228 136 6 1 225 244 462 6.49e-30 116
Msa0439140 AT5G11650.1 33.480 227 135 8 1 222 160 375 2.30e-25 102
Msa0439140 AT1G18360.1 32.599 227 139 6 1 223 163 379 2.36e-25 102

Find 89 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGACCACATACTCTTTA+AGG 0.123246 3_3:+4653763 Msa0439140:five_prime_UTR
CTTGGAAGAGATTGCAATTC+TGG 0.138099 3_3:-4657390 None:intergenic
CAATGAATTGCATAAGATTT+TGG 0.153787 3_3:+4653673 Msa0439140:five_prime_UTR
ACAAGCTCGTGAAGCCTTTA+AGG 0.155648 3_3:+4653727 Msa0439140:five_prime_UTR
CCCATGCCTTAGGTTGTTTA+AGG 0.160845 3_3:-4657461 None:intergenic
TTCGGCCGCCTGGCAGTTTC+AGG 0.174448 3_3:-4654833 None:intergenic
CCGAAGCTGAATATCCTTAA+AGG 0.205753 3_3:-4653741 None:intergenic
ATGAATATTGAGATTGTTCT+TGG 0.219578 3_3:+4658840 Msa0439140:three_prime_UTR
TGCAGGAATAGCTAGAAAAT+TGG 0.274864 3_3:+4655013 Msa0439140:five_prime_UTR
CTACATGCCTTCAAAGAAAA+AGG 0.295838 3_3:-4654897 None:intergenic
TCTCTTCCAAGCTTCCTCTT+TGG 0.299326 3_3:+4657402 Msa0439140:CDS
TTTGTAAGCAACAACATTAT+AGG 0.319531 3_3:-4657988 None:intergenic
TCCAACAACCATAACATATA+TGG 0.330352 3_3:+4653415 Msa0439140:five_prime_UTR
TTAGGCTGAGTGTAGAATTC+AGG 0.333949 3_3:+4653600 Msa0439140:intron
GCCATATATGTTATGGTTGT+TGG 0.338789 3_3:-4653416 None:intergenic
ATATTGTGAAATTTATTTGC+AGG 0.348551 3_3:+4654996 Msa0439140:five_prime_UTR
TTGCCATTGCTAATCCTTCA+TGG 0.351070 3_3:+4658596 Msa0439140:CDS
CACAGCTGCTTTCGGCCGCC+TGG 0.352234 3_3:-4654843 None:intergenic
GCTATGGATTATCCAGGATT+TGG 0.355333 3_3:+4655059 Msa0439140:exon
AGTTAAGTCAACCAAAGTTT+AGG 0.361407 3_3:+4653302 None:intergenic
GCTATGGCTACTAGATTTCC+AGG 0.389057 3_3:+4653644 Msa0439140:five_prime_UTR
AGTTTAGGTACCTTTGATCT+TGG 0.394996 3_3:-4655153 None:intergenic
AAATTGGCATGTGCTGGATA+TGG 0.398369 3_3:+4655029 Msa0439140:five_prime_UTR
ACTTGGATTATCATTTCATC+AGG 0.402873 3_3:-4658737 None:intergenic
TGCAATTCATTGTCAACTCC+TGG 0.404718 3_3:-4653662 None:intergenic
TGCCATTGCTAATCCTTCAT+GGG 0.412278 3_3:+4658597 Msa0439140:CDS
CTTTGAAGGCATGTAGTAGC+TGG 0.420752 3_3:+4654904 Msa0439140:five_prime_UTR
AGAGATAGGATGAGTGGAAA+TGG 0.426824 3_3:-4653383 None:intergenic
AGATTTGAAGAAGAGAGAAA+TGG 0.427655 3_3:+4657722 Msa0439140:CDS
GCTTACCATTCTCTTCTTGA+GGG 0.433960 3_3:+4658710 Msa0439140:CDS
TGCTTACCATTCTCTTCTTG+AGG 0.435129 3_3:+4658709 Msa0439140:CDS
AGAACAATCTCAATATTCAT+AGG 0.436876 3_3:-4658837 None:intergenic
CAAGAAGCTTAAACTTTACA+AGG 0.438282 3_3:+4658685 Msa0439140:CDS
CAGTAAAACACAGCTGCTTT+CGG 0.438591 3_3:-4654851 None:intergenic
TAGTAGCTGGTGTTAAGTTC+TGG 0.439690 3_3:+4654917 Msa0439140:five_prime_UTR
CTTCCTCTTTGGACAATCCA+TGG 0.443316 3_3:+4657413 Msa0439140:CDS
TCAAGAAATAGAAAAGAGAT+TGG 0.449597 3_3:+4658055 Msa0439140:CDS
AGGCATAGCCATATATGTTA+TGG 0.454761 3_3:-4653423 None:intergenic
TGTTATGGTTGTTGGATATG+AGG 0.457938 3_3:-4653408 None:intergenic
GCTAGAAAATTGGCATGTGC+TGG 0.472592 3_3:+4655023 Msa0439140:five_prime_UTR
CCTTTAAGGATATTCAGCTT+CGG 0.473133 3_3:+4653741 Msa0439140:five_prime_UTR
TTGGATATGAGGAAAGAGAT+AGG 0.476776 3_3:-4653397 None:intergenic
ATAATATGGGACCTAAACTT+TGG 0.477682 3_3:-4653313 None:intergenic
ACACATTGGTGCAACAAGAA+TGG 0.480543 3_3:-4657490 None:intergenic
ATGGCGCCATCCCATGCCTT+AGG 0.492346 3_3:-4657471 None:intergenic
TTGCTAGCTCAGATACTCAT+TGG 0.501169 3_3:+4657633 Msa0439140:CDS
TAGAAATCTTCTACAAGAGC+TGG 0.502129 3_3:+4654807 Msa0439140:five_prime_UTR
CCAGGATTTGGTCTTTCAGA+AGG 0.502384 3_3:+4655071 Msa0439140:CDS
GATTGTCCAAAGAGGAAGCT+TGG 0.503541 3_3:-4657408 None:intergenic
GGGAACGATGAAAACGGAAA+AGG 0.508501 3_3:-4653460 None:intergenic
TTCCTCTTTGGACAATCCAT+GGG 0.527323 3_3:+4657414 Msa0439140:CDS
AATAAAATAAAATTGAGGAA+TGG 0.528960 3_3:+4658914 Msa0439140:three_prime_UTR
CCTTCTGAAAGACCAAATCC+TGG 0.529189 3_3:-4655071 None:intergenic
TACCTTGGGAACGATGAAAA+CGG 0.539480 3_3:-4653466 None:intergenic
GCTGGTTTCCTGAAACTGCC+AGG 0.541160 3_3:+4654825 Msa0439140:five_prime_UTR
TCATACGAGGTGAACTCAAA+GGG 0.541716 3_3:+4654782 Msa0439140:five_prime_UTR
GGTAAAGACGACATTGGCTA+TGG 0.547698 3_3:+4653628 Msa0439140:five_prime_UTR
GAGGAAAGAGATAGGATGAG+TGG 0.550232 3_3:-4653389 None:intergenic
TATTGAGATTGTTCTTGGCA+TGG 0.551773 3_3:+4658845 Msa0439140:three_prime_UTR
ACCTTAAACAACCTAAGGCA+TGG 0.551832 3_3:+4657460 Msa0439140:CDS
TCTTTAGATTGCAGATGACA+TGG 0.555683 3_3:+4657599 Msa0439140:intron
ATAGTACCTTAAAGAGTATG+TGG 0.557114 3_3:-4653769 None:intergenic
GCCATTGCTAATCCTTCATG+GGG 0.559750 3_3:+4658598 Msa0439140:CDS
GATGCACCTTAAACAACCTA+AGG 0.561834 3_3:+4657455 Msa0439140:CDS
CAATATCAGCCTCCCCATGA+AGG 0.562301 3_3:-4658610 None:intergenic
AAGATGAATGTTTCAAGCTG+TGG 0.564559 3_3:-4658790 None:intergenic
CTCTTTGGACAATCCATGGG+AGG 0.564768 3_3:+4657417 Msa0439140:CDS
TCAACTAGTGAATCGAAACT+AGG 0.566144 3_3:-4655110 None:intergenic
ACAAAGATAAACCGCGGTTG+TGG 0.567389 3_3:+4658006 Msa0439140:CDS
TAAAGCAACAGCTCCTCCCA+TGG 0.568099 3_3:-4657430 None:intergenic
GTCATACGAGGTGAACTCAA+AGG 0.582659 3_3:+4654781 Msa0439140:intron
AGTATCTGAGCTAGCAACCA+TGG 0.584270 3_3:-4657627 None:intergenic
GTTCACCCTCAAGAAGAGAA+TGG 0.585405 3_3:-4658715 None:intergenic
CCTTAAACAACCTAAGGCAT+GGG 0.589776 3_3:+4657461 Msa0439140:CDS
TCCACAAAAGAATTTAGCAG+AGG 0.592497 3_3:+4657689 Msa0439140:CDS
GAGATTTACTCCAAGATCAA+AGG 0.595424 3_3:+4655143 Msa0439140:CDS
ATTGCTAATCCTTCATGGGG+AGG 0.602643 3_3:+4658601 Msa0439140:CDS
TCCCCATGAAGGATTAGCAA+TGG 0.609252 3_3:-4658599 None:intergenic
GCTTTGCAGACTCAATGCGA+TGG 0.622456 3_3:+4654618 Msa0439140:intron
CAGATGACATGGTTCCTCCA+TGG 0.625513 3_3:+4657610 Msa0439140:CDS
AAACAACCTAAGGCATGGGA+TGG 0.626145 3_3:+4657465 Msa0439140:CDS
CTCCCATGGATTGTCCAAAG+AGG 0.649020 3_3:-4657416 None:intergenic
GAGAGAGGTAAAGACGACAT+TGG 0.659166 3_3:+4653622 Msa0439140:five_prime_UTR
GAGTGTAGAATTCAGGAGAG+AGG 0.664486 3_3:+4653607 Msa0439140:five_prime_UTR
TTGCTTACAAAGATAAACCG+CGG 0.712200 3_3:+4658000 Msa0439140:CDS
TCGACGGCAGTCCACAACCG+CGG 0.716565 3_3:-4658017 None:intergenic
TACTTCACAACAGTCATACG+AGG 0.720811 3_3:+4654769 Msa0439140:intron
ATCTGAGCTAGCAACCATGG+AGG 0.731031 3_3:-4657624 None:intergenic
GGTTTCCTGAAACTGCCAGG+CGG 0.739305 3_3:+4654828 Msa0439140:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACAAATTTTAAGAAAATTA+TGG + chr3_3:4655518-4655537 Msa0439140:intron 10.0%
!!! TGATTTTCTCAAATTATTAA+CGG - chr3_3:4653934-4653953 None:intergenic 15.0%
!! GAACATTATAAAACAAATTA+AGG - chr3_3:4654133-4654152 None:intergenic 15.0%
!!! TATTCAATTTCATAGTATTT+TGG + chr3_3:4654171-4654190 Msa0439140:intron 15.0%
!! AAAAAAATTACTTTACACAT+TGG - chr3_3:4657507-4657526 None:intergenic 15.0%
!! AAACAAAAACAATATTCTAT+TGG - chr3_3:4657763-4657782 None:intergenic 15.0%
!!! GTTTGATAACTTAAAAATTT+TGG + chr3_3:4657779-4657798 Msa0439140:intron 15.0%
!!! TTTTTAGTGATATCATTTTA+TGG + chr3_3:4658759-4658778 Msa0439140:CDS 15.0%
!! AATAAAATAAAATTGAGGAA+TGG + chr3_3:4658914-4658933 Msa0439140:three_prime_UTR 15.0%
!!! TTTTTCTGAGTAGATAATAT+GGG - chr3_3:4653329-4653348 None:intergenic 20.0%
!!! ATTTTTCTGAGTAGATAATA+TGG - chr3_3:4653330-4653349 None:intergenic 20.0%
!! CAGAGAATAGTAAAAAAAAA+TGG - chr3_3:4653511-4653530 None:intergenic 20.0%
!! ATTTCGAAAAAAAATACATG+TGG - chr3_3:4654552-4654571 None:intergenic 20.0%
!! ATATTGTGAAATTTATTTGC+AGG + chr3_3:4654996-4655015 Msa0439140:five_prime_UTR 20.0%
!! CGTGTAGAATAATTATTAAA+AGG + chr3_3:4655421-4655440 Msa0439140:intron 20.0%
!!! ACTTAAAACATACTTTTTTG+TGG + chr3_3:4655491-4655510 Msa0439140:intron 20.0%
!! TTAAGAAAATTATGGATTTG+AGG + chr3_3:4655526-4655545 Msa0439140:intron 20.0%
!! GTGTCAAATAAAAAATAAAG+AGG + chr3_3:4655719-4655738 Msa0439140:intron 20.0%
!! TAGATAATAACTACAAGAAT+CGG - chr3_3:4656472-4656491 None:intergenic 20.0%
!!! TCTTTTAGTTTAGTATTCAT+AGG + chr3_3:4656508-4656527 Msa0439140:intron 20.0%
!!! CTTTTAGTTTAGTATTCATA+GGG + chr3_3:4656509-4656528 Msa0439140:intron 20.0%
!!! GAGTAATTTTTTTAGCTTTA+TGG + chr3_3:4656623-4656642 Msa0439140:intron 20.0%
!!! ATTTTTTTAGCTTTATGGAA+AGG + chr3_3:4656628-4656647 Msa0439140:intron 20.0%
!! TCAAATGAAGAATAATAAGA+TGG - chr3_3:4656675-4656694 None:intergenic 20.0%
!!! GTTTCATTACTAGTTTATAA+AGG + chr3_3:4656862-4656881 Msa0439140:intron 20.0%
!! CTATGATACTATCTTAATTT+GGG - chr3_3:4656940-4656959 None:intergenic 20.0%
!! ACTATGATACTATCTTAATT+TGG - chr3_3:4656941-4656960 None:intergenic 20.0%
!! GTAAAGAAGTCTTAAAATTT+CGG - chr3_3:4657147-4657166 None:intergenic 20.0%
!!! TGTATATTTTACTTTCCTTT+GGG + chr3_3:4657214-4657233 Msa0439140:intron 20.0%
!! ATTTCATTATTTATACCCAA+AGG - chr3_3:4657232-4657251 None:intergenic 20.0%
!! TTTGGGTATAAATAATGAAA+TGG + chr3_3:4657231-4657250 Msa0439140:intron 20.0%
!! GTAAAAAGTGATATATTTGT+AGG - chr3_3:4657807-4657826 None:intergenic 20.0%
!! AAATGATATCACTAAAAACT+TGG - chr3_3:4658757-4658776 None:intergenic 20.0%
!!! AAAAGGTTTGAAATTTTGAG+AGG - chr3_3:4653446-4653465 None:intergenic 25.0%
!!! TTTTTTTGTCAAAGTACCTT+GGG - chr3_3:4653483-4653502 None:intergenic 25.0%
!!! TTTTTTTTGTCAAAGTACCT+TGG - chr3_3:4653484-4653503 None:intergenic 25.0%
!!! AATATTGTTCCTTTTTCAAG+TGG + chr3_3:4653544-4653563 Msa0439140:intron 25.0%
!!! ATATTGTTCCTTTTTCAAGT+GGG + chr3_3:4653545-4653564 Msa0439140:intron 25.0%
!! CAATGAATTGCATAAGATTT+TGG + chr3_3:4653673-4653692 Msa0439140:five_prime_UTR 25.0%
!! TAAGATTTTGGATGCTAATA+TGG + chr3_3:4653685-4653704 Msa0439140:five_prime_UTR 25.0%
! TATTATTCATAAGCTTGTCA+AGG + chr3_3:4653847-4653866 Msa0439140:intron 25.0%
! TTCAGTGTAATTATATGTGT+CGG + chr3_3:4653959-4653978 Msa0439140:intron 25.0%
! AAAAGTAACTCAATCTGATT+GGG + chr3_3:4654107-4654126 Msa0439140:intron 25.0%
! TATATCTTGACTAGATTGTT+TGG - chr3_3:4654495-4654514 None:intergenic 25.0%
! AATACATGTGGAAATTTAAG+AGG - chr3_3:4654540-4654559 None:intergenic 25.0%
!! CTCAGAGAAAGTAAAAATTT+TGG - chr3_3:4654587-4654606 None:intergenic 25.0%
! TGTAGTATTCAATTTCAACA+TGG - chr3_3:4655211-4655230 None:intergenic 25.0%
! ATCAAAAGGAAATATTCATC+AGG - chr3_3:4655332-4655351 None:intergenic 25.0%
! GTACAAGATATATCATCAAA+AGG - chr3_3:4655346-4655365 None:intergenic 25.0%
! TTATTAAAAGGACACAACTT+AGG + chr3_3:4655433-4655452 Msa0439140:intron 25.0%
!!! ATAAAGAGGAATTTTTCAGT+AGG + chr3_3:4655733-4655752 Msa0439140:intron 25.0%
!!! TAAAGAGGAATTTTTCAGTA+GGG + chr3_3:4655734-4655753 Msa0439140:intron 25.0%
! TAATATCAATAGTAGAGAGT+AGG + chr3_3:4655855-4655874 Msa0439140:intron 25.0%
! AATATCAATAGTAGAGAGTA+GGG + chr3_3:4655856-4655875 Msa0439140:intron 25.0%
!! TTGTAGTTATTATCTAGCTT+AGG + chr3_3:4656476-4656495 Msa0439140:intron 25.0%
! TGTTTGCAGTTAGAATAATA+AGG - chr3_3:4656579-4656598 None:intergenic 25.0%
! TTGTGCAAAATAGAATTTCT+TGG + chr3_3:4656755-4656774 Msa0439140:intron 25.0%
! ATAGTCTATTCAAGATCAAT+TGG + chr3_3:4656956-4656975 Msa0439140:intron 25.0%
! TAGTCTATTCAAGATCAATT+GGG + chr3_3:4656957-4656976 Msa0439140:intron 25.0%
! AAACCATATCTCATCTAATA+TGG - chr3_3:4657053-4657072 None:intergenic 25.0%
! ATGAGATATGGTTTCAAAAT+CGG + chr3_3:4657059-4657078 Msa0439140:intron 25.0%
!! AAAATCGGTTTATAAATCTG+AGG + chr3_3:4657074-4657093 Msa0439140:intron 25.0%
!!! AATTTTAAGACTTCTTTACC+TGG + chr3_3:4657148-4657167 Msa0439140:intron 25.0%
!! GTGTATATTTTACTTTCCTT+TGG + chr3_3:4657213-4657232 Msa0439140:intron 25.0%
! TGCATACAAGTTAATAAAAC+TGG + chr3_3:4657302-4657321 Msa0439140:intron 25.0%
!! AGTGAATAATCAAACTTTTC+TGG + chr3_3:4657948-4657967 Msa0439140:intron 25.0%
! TTTGTAAGCAACAACATTAT+AGG - chr3_3:4657991-4658010 None:intergenic 25.0%
! TCAAGAAATAGAAAAGAGAT+TGG + chr3_3:4658055-4658074 Msa0439140:CDS 25.0%
!! ACAAGTTGAATTCTAAAGAT+AGG - chr3_3:4658093-4658112 None:intergenic 25.0%
!!! ATTGTTTTGCAATGCATTTA+TGG + chr3_3:4658168-4658187 Msa0439140:intron 25.0%
! AGCAAATGGAAAAAGAAAAA+CGG - chr3_3:4658388-4658407 None:intergenic 25.0%
!!! CTGTTAAAGTTGATATGTAA+TGG + chr3_3:4658552-4658571 Msa0439140:intron 25.0%
!!! GTAATGGTTTTGATGATTAT+AGG + chr3_3:4658568-4658587 Msa0439140:intron 25.0%
! AGAACAATCTCAATATTCAT+AGG - chr3_3:4658840-4658859 None:intergenic 25.0%
! ATGAATATTGAGATTGTTCT+TGG + chr3_3:4658840-4658859 Msa0439140:three_prime_UTR 25.0%
TCCAACAACCATAACATATA+TGG + chr3_3:4653415-4653434 Msa0439140:five_prime_UTR 30.0%
!!! TATTGTTCCTTTTTCAAGTG+GGG + chr3_3:4653546-4653565 Msa0439140:intron 30.0%
! ATAGTACCTTAAAGAGTATG+TGG - chr3_3:4653772-4653791 None:intergenic 30.0%
CAAAAGTAACTCAATCTGAT+TGG + chr3_3:4654106-4654125 Msa0439140:intron 30.0%
CACTCAGATTCTCAAATAAA+GGG - chr3_3:4654241-4654260 None:intergenic 30.0%
ACACTCAGATTCTCAAATAA+AGG - chr3_3:4654242-4654261 None:intergenic 30.0%
TTCATATTCATGTTGTTCTG+TGG + chr3_3:4654317-4654336 Msa0439140:intron 30.0%
! ATGTGGTTAGGTTTTCTTAA+AGG + chr3_3:4654371-4654390 Msa0439140:intron 30.0%
TGATAGATAGTTCATAGAGT+AGG + chr3_3:4654418-4654437 Msa0439140:intron 30.0%
AACCATGAATAAATTCAACG+AGG + chr3_3:4654461-4654480 Msa0439140:intron 30.0%
CAAGTAATGCAAATACAGAA+AGG - chr3_3:4654748-4654767 None:intergenic 30.0%
TGAATACTACAAATCTACTG+TGG + chr3_3:4655220-4655239 Msa0439140:intron 30.0%
AGTATAATAGTGTACCATAG+AGG + chr3_3:4655270-4655289 Msa0439140:intron 30.0%
TTATGGATTTGAGGAAATCA+TGG + chr3_3:4655535-4655554 Msa0439140:intron 30.0%
TATGGATTTGAGGAAATCAT+GGG + chr3_3:4655536-4655555 Msa0439140:intron 30.0%
TCTCCTTTATAACCAAACTT+AGG - chr3_3:4655617-4655636 None:intergenic 30.0%
AAAGGAGAGTTATGTTAAAC+AGG + chr3_3:4655629-4655648 Msa0439140:intron 30.0%
AAGGAGAGTTATGTTAAACA+GGG + chr3_3:4655630-4655649 Msa0439140:intron 30.0%
AACTAGAACTACAACATCAA+AGG + chr3_3:4655672-4655691 Msa0439140:intron 30.0%
GAACGATAGATACCTAAATA+GGG + chr3_3:4655878-4655897 Msa0439140:intron 30.0%
ATAGATACCTAAATAGGGTA+GGG + chr3_3:4655883-4655902 Msa0439140:intron 30.0%
GCTAATTCGTTCCATATATA+AGG - chr3_3:4655914-4655933 None:intergenic 30.0%
TTTACTTAGTTGTTAGACTC+AGG + chr3_3:4656100-4656119 Msa0439140:intron 30.0%
! TAGCTTGCAAAATATGACAA+AGG - chr3_3:4656536-4656555 None:intergenic 30.0%
GAAACATATAAGATGACAGT+AGG - chr3_3:4656847-4656866 None:intergenic 30.0%
TTAACTCAACCATGTAAAAC+CGG - chr3_3:4656911-4656930 None:intergenic 30.0%
AGTCCATATTAGATGAGATA+TGG + chr3_3:4657047-4657066 Msa0439140:intron 30.0%
AATATCGGCATGTAAAGTAA+GGG - chr3_3:4657103-4657122 None:intergenic 30.0%
! AAGTAAAAGTTCAAGTTTCC+AGG - chr3_3:4657169-4657188 None:intergenic 30.0%
! CTTGAACTTTTACTTTCACA+TGG + chr3_3:4657174-4657193 Msa0439140:intron 30.0%
CGAAACTATATCCTTACAAA+AGG + chr3_3:4657342-4657361 Msa0439140:intron 30.0%
CTATATCCTTACAAAAGGTT+TGG + chr3_3:4657347-4657366 Msa0439140:intron 30.0%
! AATGAACCAAACCTTTTGTA+AGG - chr3_3:4657356-4657375 None:intergenic 30.0%
!! TTCTGAAACAATTTAACTCC+AGG + chr3_3:4657529-4657548 Msa0439140:intron 30.0%
GAAAATCATACAAAAACACC+TGG - chr3_3:4657550-4657569 None:intergenic 30.0%
! ATCTAAAGAAATAGAGTGTC+TGG - chr3_3:4657588-4657607 None:intergenic 30.0%
AGATTTGAAGAAGAGAGAAA+TGG + chr3_3:4657722-4657741 Msa0439140:CDS 30.0%
GATTTAAGTCAGAAAGCAAA+TGG - chr3_3:4658402-4658421 None:intergenic 30.0%
! CAATTCACGATTCTGAAAAT+AGG + chr3_3:4658468-4658487 Msa0439140:intron 30.0%
! TAAAATGTTTTGCTCACAGA+GGG - chr3_3:4658644-4658663 None:intergenic 30.0%
! ATAAAATGTTTTGCTCACAG+AGG - chr3_3:4658645-4658664 None:intergenic 30.0%
CAAGAAGCTTAAACTTTACA+AGG + chr3_3:4658685-4658704 Msa0439140:CDS 30.0%
ACTTGGATTATCATTTCATC+AGG - chr3_3:4658740-4658759 None:intergenic 30.0%
TTGGATATGAGGAAAGAGAT+AGG - chr3_3:4653400-4653419 None:intergenic 35.0%
TGTTATGGTTGTTGGATATG+AGG - chr3_3:4653411-4653430 None:intergenic 35.0%
GCCATATATGTTATGGTTGT+TGG - chr3_3:4653419-4653438 None:intergenic 35.0%
AGGCATAGCCATATATGTTA+TGG - chr3_3:4653426-4653445 None:intergenic 35.0%
!!! ATTGCTTTTTGTGACCCTTT+AGG + chr3_3:4653582-4653601 Msa0439140:intron 35.0%
AATTCTACACTCAGCCTAAA+GGG - chr3_3:4653599-4653618 None:intergenic 35.0%
! CCTTTAAGGATATTCAGCTT+CGG + chr3_3:4653741-4653760 Msa0439140:five_prime_UTR 35.0%
GATTGACCACATACTCTTTA+AGG + chr3_3:4653763-4653782 Msa0439140:five_prime_UTR 35.0%
ATATTCACCAATGACACGTT+TGG + chr3_3:4653798-4653817 Msa0439140:intron 35.0%
ATCACTATGAAGCACAGATA+CGG + chr3_3:4653891-4653910 Msa0439140:intron 35.0%
ATTCTCAAATAAAGGGATCC+TGG - chr3_3:4654234-4654253 None:intergenic 35.0%
!! TAGTCAATTGGTGCTATTCA+TGG + chr3_3:4654340-4654359 Msa0439140:intron 35.0%
TATTCATGGTAGTTGAGATG+TGG + chr3_3:4654354-4654373 Msa0439140:intron 35.0%
AGATAGTTCATAGAGTAGGA+TGG + chr3_3:4654422-4654441 Msa0439140:intron 35.0%
TGCCTCGTTGAATTTATTCA+TGG - chr3_3:4654466-4654485 None:intergenic 35.0%
! TTTAAGAGGCACATTCTAAG+AGG - chr3_3:4654526-4654545 None:intergenic 35.0%
ATTGAGTCTGCAAAGCATAA+AGG - chr3_3:4654614-4654633 None:intergenic 35.0%
!! ATGCGATGGACTAAAAATGA+AGG + chr3_3:4654632-4654651 Msa0439140:five_prime_UTR 35.0%
!! GAAAAGGTATTAGCATAGCA+CGG - chr3_3:4654723-4654742 None:intergenic 35.0%
CAAATACAGAAAGGAGGAAA+AGG - chr3_3:4654739-4654758 None:intergenic 35.0%
GTAATGCAAATACAGAAAGG+AGG - chr3_3:4654745-4654764 None:intergenic 35.0%
TAGAAATCTTCTACAAGAGC+TGG + chr3_3:4654807-4654826 Msa0439140:five_prime_UTR 35.0%
! GTGTTTTACTGTCATGGTTA+TGG + chr3_3:4654863-4654882 Msa0439140:five_prime_UTR 35.0%
! ACTTCCACCTTTTTCTTTGA+AGG + chr3_3:4654890-4654909 Msa0439140:five_prime_UTR 35.0%
CTACATGCCTTCAAAGAAAA+AGG - chr3_3:4654900-4654919 None:intergenic 35.0%
TGCAGGAATAGCTAGAAAAT+TGG + chr3_3:4655013-4655032 Msa0439140:five_prime_UTR 35.0%
TCAACTAGTGAATCGAAACT+AGG - chr3_3:4655113-4655132 None:intergenic 35.0%
GAGATTTACTCCAAGATCAA+AGG + chr3_3:4655143-4655162 Msa0439140:CDS 35.0%
AGTTTAGGTACCTTTGATCT+TGG - chr3_3:4655156-4655175 None:intergenic 35.0%
! GGTAGAATTAGTTTCTTGTC+AGG + chr3_3:4655241-4655260 Msa0439140:intron 35.0%
! GAATTAGTTTCTTGTCAGGA+AGG + chr3_3:4655245-4655264 Msa0439140:intron 35.0%
GTACTTAAGGCATGAAGTTA+AGG + chr3_3:4655298-4655317 Msa0439140:intron 35.0%
ACTACTTTCAGAGCAAAAAC+TGG - chr3_3:4655368-4655387 None:intergenic 35.0%
CTACACGAATCTTTGTATGA+TGG - chr3_3:4655408-4655427 None:intergenic 35.0%
!! ACAACACGAAAAAGTACCTA+AGG - chr3_3:4655466-4655485 None:intergenic 35.0%
AAGAACACGAAAAACACCTA+AGG + chr3_3:4655584-4655603 Msa0439140:intron 35.0%
AAACTTAGGTGCATTTCCTT+AGG - chr3_3:4655603-4655622 None:intergenic 35.0%
TAAGGAAATGCACCTAAGTT+TGG + chr3_3:4655602-4655621 Msa0439140:intron 35.0%
GCACCTAAGTTTGGTTATAA+AGG + chr3_3:4655611-4655630 Msa0439140:intron 35.0%
TTATGTTAAACAGGGCTCTT+AGG + chr3_3:4655638-4655657 Msa0439140:intron 35.0%
!! GTAGTTCTAGTTGTATCATC+TGG - chr3_3:4655664-4655683 None:intergenic 35.0%
!! CTCTCAAAGCATTTGTGTTT+TGG - chr3_3:4655700-4655719 None:intergenic 35.0%
! CAACGAGTTTTACATAGGAA+AGG - chr3_3:4655829-4655848 None:intergenic 35.0%
! ACAGACAACGAGTTTTACAT+AGG - chr3_3:4655834-4655853 None:intergenic 35.0%
GGAACGATAGATACCTAAAT+AGG + chr3_3:4655877-4655896 Msa0439140:intron 35.0%
GATAGATACCTAAATAGGGT+AGG + chr3_3:4655882-4655901 Msa0439140:intron 35.0%
TGGTAAGGAATCTGAATAAG+AGG - chr3_3:4655979-4655998 None:intergenic 35.0%
TATTCAGATTCCTTACCACA+AGG + chr3_3:4655981-4656000 Msa0439140:intron 35.0%
ATTAATCAGTAAAGCAGGAC+AGG - chr3_3:4656049-4656068 None:intergenic 35.0%
CGAAGATTAATCAGTAAAGC+AGG - chr3_3:4656054-4656073 None:intergenic 35.0%
TGCTTGTAATTCACATTCAC+TGG - chr3_3:4656160-4656179 None:intergenic 35.0%
GAATGTGAATTACAAGCAGA+CGG + chr3_3:4656162-4656181 Msa0439140:intron 35.0%
CTCTTAACTAAGCTTCTTGT+TGG - chr3_3:4656349-4656368 None:intergenic 35.0%
ACCTATGTACCTTTCTACTT+AGG + chr3_3:4656702-4656721 Msa0439140:intron 35.0%
! TCCTAAGTAGAAAGGTACAT+AGG - chr3_3:4656706-4656725 None:intergenic 35.0%
CACTAACTTCCTAAGTAGAA+AGG - chr3_3:4656714-4656733 None:intergenic 35.0%
TCAATTGGGTTATCTGCTAT+TGG + chr3_3:4656971-4656990 Msa0439140:intron 35.0%
CAATTGGGTTATCTGCTATT+GGG + chr3_3:4656972-4656991 Msa0439140:intron 35.0%
CAATATCGGCATGTAAAGTA+AGG - chr3_3:4657104-4657123 None:intergenic 35.0%
CTTTACATGCCGATATTGTA+CGG + chr3_3:4657106-4657125 Msa0439140:intron 35.0%
CTAACTCAACCGTACAATAT+CGG - chr3_3:4657118-4657137 None:intergenic 35.0%
TCTTTAGATTGCAGATGACA+TGG + chr3_3:4657599-4657618 Msa0439140:intron 35.0%
! TGTGGAACTAACTTTTGCTT+TGG - chr3_3:4657675-4657694 None:intergenic 35.0%
TCCACAAAAGAATTTAGCAG+AGG + chr3_3:4657689-4657708 Msa0439140:CDS 35.0%
TTGCTTACAAAGATAAACCG+CGG + chr3_3:4658000-4658019 Msa0439140:CDS 35.0%
!!! AGTAGTTTTAAGCATCTCGA+CGG - chr3_3:4658036-4658055 None:intergenic 35.0%
! AAGTTTTCTTCTCTTCTCCT+TGG + chr3_3:4658145-4658164 Msa0439140:intron 35.0%
ATGCATTGCAAAACAATCCA+AGG - chr3_3:4658165-4658184 None:intergenic 35.0%
CACTAGAGATTCACATTGAT+TGG - chr3_3:4658245-4658264 None:intergenic 35.0%
ATGCAAAGCTGACAAAAAGT+GGG - chr3_3:4658359-4658378 None:intergenic 35.0%
TATGCAAAGCTGACAAAAAG+TGG - chr3_3:4658360-4658379 None:intergenic 35.0%
TCAAAGTCTTCAGTATTGCA+TGG - chr3_3:4658529-4658548 None:intergenic 35.0%
AAGATGAATGTTTCAAGCTG+TGG - chr3_3:4658793-4658812 None:intergenic 35.0%
TATTGAGATTGTTCTTGGCA+TGG + chr3_3:4658845-4658864 Msa0439140:three_prime_UTR 35.0%
AGAGATAGGATGAGTGGAAA+TGG - chr3_3:4653386-4653405 None:intergenic 40.0%
TACCTTGGGAACGATGAAAA+CGG - chr3_3:4653469-4653488 None:intergenic 40.0%
GAATTCTACACTCAGCCTAA+AGG - chr3_3:4653600-4653619 None:intergenic 40.0%
TTAGGCTGAGTGTAGAATTC+AGG + chr3_3:4653600-4653619 Msa0439140:intron 40.0%
TGCAATTCATTGTCAACTCC+TGG - chr3_3:4653665-4653684 None:intergenic 40.0%
CCGAAGCTGAATATCCTTAA+AGG - chr3_3:4653744-4653763 None:intergenic 40.0%
AGTCAATCCAAACGTGTCAT+TGG - chr3_3:4653808-4653827 None:intergenic 40.0%
TATGAAGCATAGACACTCCT+CGG - chr3_3:4653999-4654018 None:intergenic 40.0%
CTATGCTTCATAGACGTACA+AGG + chr3_3:4654007-4654026 Msa0439140:intron 40.0%
GATCCTGGTAATCCAAAGTT+CGG - chr3_3:4654219-4654238 None:intergenic 40.0%
GTTGTTCTGTGGTAGTCAAT+TGG + chr3_3:4654328-4654347 Msa0439140:intron 40.0%
ATGGTAGTTGAGATGTGGTT+AGG + chr3_3:4654359-4654378 Msa0439140:intron 40.0%
!! CGATGGACTAAAAATGAAGG+AGG + chr3_3:4654635-4654654 Msa0439140:five_prime_UTR 40.0%
TACTTCACAACAGTCATACG+AGG + chr3_3:4654769-4654788 Msa0439140:intron 40.0%
TCATACGAGGTGAACTCAAA+GGG + chr3_3:4654782-4654801 Msa0439140:five_prime_UTR 40.0%
! CAGTAAAACACAGCTGCTTT+CGG - chr3_3:4654854-4654873 None:intergenic 40.0%
CATGCCTTCAAAGAAAAAGG+TGG - chr3_3:4654897-4654916 None:intergenic 40.0%
! TAGTAGCTGGTGTTAAGTTC+TGG + chr3_3:4654917-4654936 Msa0439140:five_prime_UTR 40.0%
AAATTGGCATGTGCTGGATA+TGG + chr3_3:4655029-4655048 Msa0439140:five_prime_UTR 40.0%
! TGGATATGGAGTTTTCGCTA+TGG + chr3_3:4655043-4655062 Msa0439140:exon 40.0%
!! GTTTTCGCTATGGATTATCC+AGG + chr3_3:4655053-4655072 Msa0439140:exon 40.0%
! GCTATGGATTATCCAGGATT+TGG + chr3_3:4655059-4655078 Msa0439140:exon 40.0%
!! CTTAAGTACTGATGCCTCTA+TGG - chr3_3:4655287-4655306 None:intergenic 40.0%
!! CATAGAGGCATCAGTACTTA+AGG + chr3_3:4655285-4655304 Msa0439140:intron 40.0%
CAACTTAGGTGTGTTTCCTT+AGG + chr3_3:4655447-4655466 Msa0439140:intron 40.0%
! TGAAAACATGAGTTGACCTC+AGG + chr3_3:4655769-4655788 Msa0439140:intron 40.0%
! GAAAACATGAGTTGACCTCA+GGG + chr3_3:4655770-4655789 Msa0439140:intron 40.0%
! AAAACATGAGTTGACCTCAG+GGG + chr3_3:4655771-4655790 Msa0439140:intron 40.0%
ATACCTAAATAGGGTAGGGA+TGG + chr3_3:4655887-4655906 Msa0439140:intron 40.0%
GTAGGGATGGTCCTTATATA+TGG + chr3_3:4655900-4655919 Msa0439140:intron 40.0%
CTCAGGCCATATGGATAATA+CGG + chr3_3:4655953-4655972 Msa0439140:intron 40.0%
AAGAGGCCGTATTATCCATA+TGG - chr3_3:4655962-4655981 None:intergenic 40.0%
ATGAATGCACAAGCATTCAG+AGG + chr3_3:4656074-4656093 Msa0439140:intron 40.0%
!!! GATGAACCTGCCTTTTTTGT+TGG - chr3_3:4656261-4656280 None:intergenic 40.0%
TGGGATGAAATAATGACCCA+GGG - chr3_3:4656324-4656343 None:intergenic 40.0%
CATTCTCACATTGCTTCTAG+AGG + chr3_3:4656373-4656392 Msa0439140:intron 40.0%
! TCACATTGCTTCTAGAGGAT+CGG + chr3_3:4656378-4656397 Msa0439140:intron 40.0%
ACAAGAATCGGTGTGCTAAT+CGG - chr3_3:4656460-4656479 None:intergenic 40.0%
CGATATTGTACGGTTGAGTT+AGG + chr3_3:4657116-4657135 Msa0439140:intron 40.0%
CTTGGAAGAGATTGCAATTC+TGG - chr3_3:4657393-4657412 None:intergenic 40.0%
TTCCTCTTTGGACAATCCAT+GGG + chr3_3:4657414-4657433 Msa0439140:CDS 40.0%
GATGCACCTTAAACAACCTA+AGG + chr3_3:4657455-4657474 Msa0439140:CDS 40.0%
ACCTTAAACAACCTAAGGCA+TGG + chr3_3:4657460-4657479 Msa0439140:CDS 40.0%
CCTTAAACAACCTAAGGCAT+GGG + chr3_3:4657461-4657480 Msa0439140:CDS 40.0%
ACACATTGGTGCAACAAGAA+TGG - chr3_3:4657493-4657512 None:intergenic 40.0%
TTGCTAGCTCAGATACTCAT+TGG + chr3_3:4657633-4657652 Msa0439140:CDS 40.0%
! GCCTCTGCTAAATTCTTTTG+TGG - chr3_3:4657693-4657712 None:intergenic 40.0%
TTGCCATTGCTAATCCTTCA+TGG + chr3_3:4658596-4658615 Msa0439140:CDS 40.0%
TGCCATTGCTAATCCTTCAT+GGG + chr3_3:4658597-4658616 Msa0439140:CDS 40.0%
TGCTTACCATTCTCTTCTTG+AGG + chr3_3:4658709-4658728 Msa0439140:CDS 40.0%
GCTTACCATTCTCTTCTTGA+GGG + chr3_3:4658710-4658729 Msa0439140:CDS 40.0%
GAGGAAAGAGATAGGATGAG+TGG - chr3_3:4653392-4653411 None:intergenic 45.0%
GGGAACGATGAAAACGGAAA+AGG - chr3_3:4653463-4653482 None:intergenic 45.0%
! TTCCGTTTTCATCGTTCCCA+AGG + chr3_3:4653464-4653483 Msa0439140:five_prime_UTR 45.0%
TCACACACCCCACTTGAAAA+AGG - chr3_3:4653556-4653575 None:intergenic 45.0%
GAGTGTAGAATTCAGGAGAG+AGG + chr3_3:4653607-4653626 Msa0439140:five_prime_UTR 45.0%
GAGAGAGGTAAAGACGACAT+TGG + chr3_3:4653622-4653641 Msa0439140:five_prime_UTR 45.0%
! GGTAAAGACGACATTGGCTA+TGG + chr3_3:4653628-4653647 Msa0439140:five_prime_UTR 45.0%
GCTATGGCTACTAGATTTCC+AGG + chr3_3:4653644-4653663 Msa0439140:five_prime_UTR 45.0%
ACAAGCTCGTGAAGCCTTTA+AGG + chr3_3:4653727-4653746 Msa0439140:five_prime_UTR 45.0%
GGCCAGACTTTACTTATCTC+CGG + chr3_3:4654192-4654211 Msa0439140:intron 45.0%
GCCAGACTTTACTTATCTCC+GGG + chr3_3:4654193-4654212 Msa0439140:intron 45.0%
GTCATACGAGGTGAACTCAA+AGG + chr3_3:4654781-4654800 Msa0439140:intron 45.0%
! GCAGCTGTGTTTTACTGTCA+TGG + chr3_3:4654857-4654876 Msa0439140:five_prime_UTR 45.0%
! CTTTGAAGGCATGTAGTAGC+TGG + chr3_3:4654904-4654923 Msa0439140:five_prime_UTR 45.0%
GCTAGAAAATTGGCATGTGC+TGG + chr3_3:4655023-4655042 Msa0439140:five_prime_UTR 45.0%
! CCTTCTGAAAGACCAAATCC+TGG - chr3_3:4655074-4655093 None:intergenic 45.0%
! CCAGGATTTGGTCTTTCAGA+AGG + chr3_3:4655071-4655090 Msa0439140:CDS 45.0%
!! CAAAGGTACCTAAACTCGCA+TGG + chr3_3:4655160-4655179 Msa0439140:intron 45.0%
ACACAGTTCCATGCGAGTTT+AGG - chr3_3:4655171-4655190 None:intergenic 45.0%
CTGAGACATAAGGCTTGTCA+GGG - chr3_3:4655938-4655957 None:intergenic 45.0%
TCCATATGGCCTGAGACATA+AGG - chr3_3:4655948-4655967 None:intergenic 45.0%
ATTCCTTACCACAAGGTCGA+TGG + chr3_3:4655988-4656007 Msa0439140:intron 45.0%
TTCCTTACCACAAGGTCGAT+GGG + chr3_3:4655989-4656008 Msa0439140:intron 45.0%
TAAAGCAGGACAGGAACAGT+AGG - chr3_3:4656040-4656059 None:intergenic 45.0%
AATGCACAAGCATTCAGAGG+TGG + chr3_3:4656077-4656096 Msa0439140:intron 45.0%
AATCAATGCAGAGCGACAGT+TGG - chr3_3:4656127-4656146 None:intergenic 45.0%
AAGCTTGTCAGCAGGAATAG+TGG + chr3_3:4656205-4656224 Msa0439140:intron 45.0%
AGCTTGTCAGCAGGAATAGT+GGG + chr3_3:4656206-4656225 Msa0439140:intron 45.0%
TCATCCCACGCCAACAAAAA+AGG + chr3_3:4656248-4656267 Msa0439140:intron 45.0%
GTGGGATGAAATAATGACCC+AGG - chr3_3:4656325-4656344 None:intergenic 45.0%
ACTAAGCTTCTTGTTGGCGT+GGG - chr3_3:4656343-4656362 None:intergenic 45.0%
AACTAAGCTTCTTGTTGGCG+TGG - chr3_3:4656344-4656363 None:intergenic 45.0%
! CACATTGCTTCTAGAGGATC+GGG + chr3_3:4656379-4656398 Msa0439140:intron 45.0%
! ACATTGCTTCTAGAGGATCG+GGG + chr3_3:4656380-4656399 Msa0439140:intron 45.0%
AAAACCGGCATGTAAGGTGA+GGG - chr3_3:4656896-4656915 None:intergenic 45.0%
TAAAACCGGCATGTAAGGTG+AGG - chr3_3:4656897-4656916 None:intergenic 45.0%
CCATGTAAAACCGGCATGTA+AGG - chr3_3:4656902-4656921 None:intergenic 45.0%
!!! CCTTACATGCCGGTTTTACA+TGG + chr3_3:4656899-4656918 Msa0439140:intron 45.0%
TCTCTTCCAAGCTTCCTCTT+TGG + chr3_3:4657402-4657421 Msa0439140:CDS 45.0%
GATTGTCCAAAGAGGAAGCT+TGG - chr3_3:4657411-4657430 None:intergenic 45.0%
CTTCCTCTTTGGACAATCCA+TGG + chr3_3:4657413-4657432 Msa0439140:CDS 45.0%
! CCCATGCCTTAGGTTGTTTA+AGG - chr3_3:4657464-4657483 None:intergenic 45.0%
AAACAACCTAAGGCATGGGA+TGG + chr3_3:4657465-4657484 Msa0439140:CDS 45.0%
AGTATCTGAGCTAGCAACCA+TGG - chr3_3:4657630-4657649 None:intergenic 45.0%
ACAAAGATAAACCGCGGTTG+TGG + chr3_3:4658006-4658025 Msa0439140:CDS 45.0%
TCAGGTAGTGATTCGCTAGA+AGG - chr3_3:4658323-4658342 None:intergenic 45.0%
GTGGGCAATTACACAAGTTC+AGG - chr3_3:4658341-4658360 None:intergenic 45.0%
GCCATTGCTAATCCTTCATG+GGG + chr3_3:4658598-4658617 Msa0439140:CDS 45.0%
! TCCCCATGAAGGATTAGCAA+TGG - chr3_3:4658602-4658621 None:intergenic 45.0%
ATTGCTAATCCTTCATGGGG+AGG + chr3_3:4658601-4658620 Msa0439140:CDS 45.0%
GTTCACCCTCAAGAAGAGAA+TGG - chr3_3:4658718-4658737 None:intergenic 45.0%
!!! TTTTTAATAAAATAAAATTG+AGG + chr3_3:4658909-4658928 Msa0439140:three_prime_UTR 5.0%
GCATAGACACTCCTCGGATT+AGG - chr3_3:4653993-4654012 None:intergenic 50.0%
GCCCGGAGATAAGTAAAGTC+TGG - chr3_3:4654197-4654216 None:intergenic 50.0%
TGGTAATCCAAAGTTCGGCC+CGG - chr3_3:4654214-4654233 None:intergenic 50.0%
GCTTTGCAGACTCAATGCGA+TGG + chr3_3:4654618-4654637 Msa0439140:intron 50.0%
!! AAAGGTACCTCCCCTCAGAT+CGG - chr3_3:4655811-4655830 None:intergenic 50.0%
GGACCATCCCTACCCTATTT+AGG - chr3_3:4655893-4655912 None:intergenic 50.0%
CCTGAGACATAAGGCTTGTC+AGG - chr3_3:4655939-4655958 None:intergenic 50.0%
! CCTGACAAGCCTTATGTCTC+AGG + chr3_3:4655936-4655955 Msa0439140:intron 50.0%
GCCTTATGTCTCAGGCCATA+TGG + chr3_3:4655944-4655963 Msa0439140:intron 50.0%
AGTTTAGCCCATCGACCTTG+TGG - chr3_3:4655999-4656018 None:intergenic 50.0%
TTTGCGAGAAGCTTGTCAGC+AGG + chr3_3:4656197-4656216 Msa0439140:intron 50.0%
!!! CCTGCCTTTTTTGTTGGCGT+GGG - chr3_3:4656255-4656274 None:intergenic 50.0%
!!! ACCTGCCTTTTTTGTTGGCG+TGG - chr3_3:4656256-4656275 None:intergenic 50.0%
GCGAAATAATGACCCTCGCA+GGG - chr3_3:4656286-4656305 None:intergenic 50.0%
AGCGAAATAATGACCCTCGC+AGG - chr3_3:4656287-4656306 None:intergenic 50.0%
! CATTGCTTCTAGAGGATCGG+GGG + chr3_3:4656381-4656400 Msa0439140:intron 50.0%
GCACGGATGTACTGGACATT+GGG - chr3_3:4656428-4656447 None:intergenic 50.0%
TCATCCCTCACCTTACATGC+CGG + chr3_3:4656889-4656908 Msa0439140:intron 50.0%
CTATTGGGTTACTCGAGCCA+GGG + chr3_3:4656987-4657006 Msa0439140:intron 50.0%
AACACAGACACCTCATGTCC+TGG - chr3_3:4657024-4657043 None:intergenic 50.0%
! CTCCCATGGATTGTCCAAAG+AGG - chr3_3:4657419-4657438 None:intergenic 50.0%
CTCTTTGGACAATCCATGGG+AGG + chr3_3:4657417-4657436 Msa0439140:CDS 50.0%
TAAAGCAACAGCTCCTCCCA+TGG - chr3_3:4657433-4657452 None:intergenic 50.0%
CAGATGACATGGTTCCTCCA+TGG + chr3_3:4657610-4657629 Msa0439140:CDS 50.0%
ATCTGAGCTAGCAACCATGG+AGG - chr3_3:4657627-4657646 None:intergenic 50.0%
CAATATCAGCCTCCCCATGA+AGG - chr3_3:4658613-4658632 None:intergenic 50.0%
CGGACAACTCACCTAATCCG+AGG + chr3_3:4653979-4653998 Msa0439140:intron 55.0%
CTTATCTCCGGGCCGAACTT+TGG + chr3_3:4654204-4654223 Msa0439140:intron 55.0%
GGGCCGAACTTTGGATTACC+AGG + chr3_3:4654213-4654232 Msa0439140:intron 55.0%
! GCTGGTTTCCTGAAACTGCC+AGG + chr3_3:4654825-4654844 Msa0439140:five_prime_UTR 55.0%
GGTTTCCTGAAACTGCCAGG+CGG + chr3_3:4654828-4654847 Msa0439140:five_prime_UTR 55.0%
! TGAGTTGACCTCAGGGGAGT+CGG + chr3_3:4655777-4655796 Msa0439140:intron 55.0%
AGCCCATCGACCTTGTGGTA+AGG - chr3_3:4655994-4656013 None:intergenic 55.0%
!! ATAGTGGGCTTTCTGCTGCC+AGG + chr3_3:4656221-4656240 Msa0439140:intron 55.0%
TTGGCGTGGGATGAAAGACC+TGG - chr3_3:4656242-4656261 None:intergenic 55.0%
CCCACGCCAACAAAAAAGGC+AGG + chr3_3:4656252-4656271 Msa0439140:intron 55.0%
CAGGTTCATCAACCCTGCGA+GGG + chr3_3:4656271-4656290 Msa0439140:intron 55.0%
!! CTTCTAGAGTGCTCAGCCCT+GGG + chr3_3:4656305-4656324 Msa0439140:intron 55.0%
GGATGTACTGGACATTGGGC+AGG - chr3_3:4656424-4656443 None:intergenic 55.0%
GGCACGGATGTACTGGACAT+TGG - chr3_3:4656429-4656448 None:intergenic 55.0%
ATGTCCAGTACATCCGTGCC+AGG + chr3_3:4656429-4656448 Msa0439140:intron 55.0%
GCTATTGGGTTACTCGAGCC+AGG + chr3_3:4656986-4657005 Msa0439140:intron 55.0%
CTTGTCCAGTCCAGGACATG+AGG + chr3_3:4657011-4657030 Msa0439140:intron 55.0%
AGACACCTCATGTCCTGGAC+TGG - chr3_3:4657019-4657038 None:intergenic 55.0%
GCAGGTTCATCAACCCTGCG+AGG + chr3_3:4656270-4656289 Msa0439140:intron 60.0%
!! GCTTCTAGAGTGCTCAGCCC+TGG + chr3_3:4656304-4656323 Msa0439140:intron 60.0%
CAAGCCTGGCACGGATGTAC+TGG - chr3_3:4656436-4656455 None:intergenic 60.0%
CAGTACATCCGTGCCAGGCT+TGG + chr3_3:4656434-4656453 Msa0439140:intron 60.0%
CTAATCGGCCAAGCCTGGCA+CGG - chr3_3:4656445-4656464 None:intergenic 60.0%
GTGTGCTAATCGGCCAAGCC+TGG - chr3_3:4656450-4656469 None:intergenic 60.0%
! TCCTGGACTGGACAAGACCC+TGG - chr3_3:4657007-4657026 None:intergenic 60.0%
ATGGCGCCATCCCATGCCTT+AGG - chr3_3:4657474-4657493 None:intergenic 60.0%
TTCGGCCGCCTGGCAGTTTC+AGG - chr3_3:4654836-4654855 None:intergenic 65.0%
GTTGACCTCAGGGGAGTCGG+TGG + chr3_3:4655780-4655799 Msa0439140:intron 65.0%
!! TCGGTGGTGGTGCCGATCTG+AGG + chr3_3:4655796-4655815 Msa0439140:intron 65.0%
!! CGGTGGTGGTGCCGATCTGA+GGG + chr3_3:4655797-4655816 Msa0439140:intron 65.0%
!! GGTGGTGGTGCCGATCTGAG+GGG + chr3_3:4655798-4655817 Msa0439140:intron 65.0%
! GCCAGGGTCTTGTCCAGTCC+AGG + chr3_3:4657003-4657022 Msa0439140:intron 65.0%
TCGACGGCAGTCCACAACCG+CGG - chr3_3:4658020-4658039 None:intergenic 65.0%
! CACAGCTGCTTTCGGCCGCC+TGG - chr3_3:4654846-4654865 None:intergenic 70.0%
GACCTCAGGGGAGTCGGTGG+TGG + chr3_3:4655783-4655802 Msa0439140:intron 70.0%
!! CACCACCACCGACTCCCCTG+AGG - chr3_3:4655788-4655807 None:intergenic 70.0%
!! GGTGGTGCCGATCTGAGGGG+AGG + chr3_3:4655801-4655820 Msa0439140:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 4653314 4658972 4653314 ID=Msa0439140;Name=Msa0439140
chr3_3 mRNA 4653314 4658972 4653314 ID=Msa0439140-mRNA-1;Parent=Msa0439140;Name=Msa0439140-mRNA-1;_AED=0.08;_eAED=0.08;_QI=640|1|1|1|0.62|0.44|9|152|233
chr3_3 exon 4653314 4653485 4653314 ID=Msa0439140-mRNA-1:exon:966;Parent=Msa0439140-mRNA-1
chr3_3 exon 4653604 4653784 4653604 ID=Msa0439140-mRNA-1:exon:967;Parent=Msa0439140-mRNA-1
chr3_3 exon 4654627 4654656 4654627 ID=Msa0439140-mRNA-1:exon:968;Parent=Msa0439140-mRNA-1
chr3_3 exon 4654782 4654956 4654782 ID=Msa0439140-mRNA-1:exon:969;Parent=Msa0439140-mRNA-1
chr3_3 exon 4654980 4655164 4654980 ID=Msa0439140-mRNA-1:exon:970;Parent=Msa0439140-mRNA-1
chr3_3 exon 4657385 4657515 4657385 ID=Msa0439140-mRNA-1:exon:971;Parent=Msa0439140-mRNA-1
chr3_3 exon 4657606 4657743 4657606 ID=Msa0439140-mRNA-1:exon:972;Parent=Msa0439140-mRNA-1
chr3_3 exon 4657984 4658082 4657984 ID=Msa0439140-mRNA-1:exon:973;Parent=Msa0439140-mRNA-1
chr3_3 exon 4658590 4658972 4658590 ID=Msa0439140-mRNA-1:exon:974;Parent=Msa0439140-mRNA-1
chr3_3 five_prime_UTR 4653314 4653485 4653314 ID=Msa0439140-mRNA-1:five_prime_utr;Parent=Msa0439140-mRNA-1
chr3_3 five_prime_UTR 4653604 4653784 4653604 ID=Msa0439140-mRNA-1:five_prime_utr;Parent=Msa0439140-mRNA-1
chr3_3 five_prime_UTR 4654627 4654656 4654627 ID=Msa0439140-mRNA-1:five_prime_utr;Parent=Msa0439140-mRNA-1
chr3_3 five_prime_UTR 4654782 4654956 4654782 ID=Msa0439140-mRNA-1:five_prime_utr;Parent=Msa0439140-mRNA-1
chr3_3 five_prime_UTR 4654980 4655061 4654980 ID=Msa0439140-mRNA-1:five_prime_utr;Parent=Msa0439140-mRNA-1
chr3_3 CDS 4655062 4655164 4655062 ID=Msa0439140-mRNA-1:cds;Parent=Msa0439140-mRNA-1
chr3_3 CDS 4657385 4657515 4657385 ID=Msa0439140-mRNA-1:cds;Parent=Msa0439140-mRNA-1
chr3_3 CDS 4657606 4657743 4657606 ID=Msa0439140-mRNA-1:cds;Parent=Msa0439140-mRNA-1
chr3_3 CDS 4657984 4658082 4657984 ID=Msa0439140-mRNA-1:cds;Parent=Msa0439140-mRNA-1
chr3_3 CDS 4658590 4658820 4658590 ID=Msa0439140-mRNA-1:cds;Parent=Msa0439140-mRNA-1
chr3_3 three_prime_UTR 4658821 4658972 4658821 ID=Msa0439140-mRNA-1:three_prime_utr;Parent=Msa0439140-mRNA-1
Gene Sequence

>Msa0439140

ATGGATTATCCAGGATTTGGTCTTTCAGAAGGTCTTCATTGCTATATTCCTAGTTTCGATTCACTAGTTGATGATGTCATCGAGATTTACTCCAAGATCAAAGAAAATCCAGAATTGCAATCTCTTCCAAGCTTCCTCTTTGGACAATCCATGGGAGGAGCTGTTGCTTTAAAGATGCACCTTAAACAACCTAAGGCATGGGATGGCGCCATTCTTGTTGCACCAATGTGTAAAATTGCAGATGACATGGTTCCTCCATGGTTGCTAGCTCAGATACTCATTGGTATAGCTAATGTTCTACCAAAGCAAAAGTTAGTTCCACAAAAGAATTTAGCAGAGGCAGCTTTTAGAGATTTGAAGAAGAGAGAAATGACTGCCTATAATGTTGTTGCTTACAAAGATAAACCGCGGTTGTGGACTGCCGTCGAGATGCTTAAAACTACTCAAGAAATAGAAAAGAGATTGGAAGAAGTATCTTTGCCATTGCTAATCCTTCATGGGGAGGCTGATATTGTGACTGATCCCTCTGTGAGCAAAACATTTTATGAGAAAGCTAGCAGCACAGACAAGAAGCTTAAACTTTACAAGGATGCTTACCATTCTCTTCTTGAGGGTGAACCTGATGAAATGATAATCCAAGTTTTTAGTGATATCATTTTATGGCTTGATGACCACAGCTTGAAACATTCATCTTCTAAATAA
Protein sequence

>Msa0439140

MDYPGFGLSEGLHCYIPSFDSLVDDVIEIYSKIKENPELQSLPSFLFGQSMGGAVALKMHLKQPKAWDGAILVAPMCKIADDMVPPWLLAQILIGIANVLPKQKLVPQKNLAEAAFRDLKKREMTAYNVVAYKDKPRLWTAVEMLKTTQEIEKRLEEVSLPLLILHGEADIVTDPSVSKTFYEKASSTDKKLKLYKDAYHSLLEGEPDEMIIQVFSDIILWLDDHSLKHSSSK*