AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0813670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0813670 MtrunA17_Chr5g0431351 94.954 218 10 1 1 218 1 217 1.20e-145 404
Msa0813670 MtrunA17_Chr4g0071811 54.348 92 38 2 130 217 293 384 1.09e-22 94.7
Msa0813670 MtrunA17_Chr7g0226451 39.850 133 41 3 124 217 219 351 2.74e-20 87.4
Msa0813670 MtrunA17_Chr1g0209861 44.144 111 42 3 125 217 316 424 1.87e-19 85.9
Msa0813670 MtrunA17_Chr8g0390971 35.354 198 80 7 45 217 226 400 5.09e-18 81.6
Msa0813670 MtrunA17_Chr1g0150471 49.275 69 32 1 149 217 232 297 2.72e-13 67.8
Msa0813670 MtrunA17_Chr3g0136701 67.442 43 14 0 175 217 232 274 2.20e-11 62.0
Msa0813670 MtrunA17_Chr4g0072871 67.442 43 14 0 175 217 298 340 4.81e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0813670 AT1G07050.1 63.964 111 29 4 113 217 88 193 2.88e-38 131
Msa0813670 AT1G07050.2 61.905 105 29 4 113 211 88 187 2.42e-33 119
Msa0813670 AT5G14370.1 53.211 109 36 3 124 217 228 336 3.77e-28 108
Msa0813670 AT4G25990.1 53.922 102 39 3 120 217 286 383 2.10e-23 97.1
Msa0813670 AT5G57180.2 53.846 91 40 2 127 217 337 425 9.15e-23 95.5
Msa0813670 AT1G73870.1 42.553 141 57 5 95 217 253 387 9.19e-21 89.7
Msa0813670 AT4G25990.2 47.009 117 39 4 120 217 286 398 1.20e-19 86.7
Msa0813670 AT4G25990.3 52.083 96 38 3 120 211 286 377 2.73e-19 85.5
Msa0813670 AT1G49130.1 52.747 91 34 3 129 217 237 320 3.71e-19 84.3
Msa0813670 AT1G49130.2 51.648 91 35 2 129 217 230 313 4.08e-19 84.3
Msa0813670 AT1G25440.1 46.429 112 42 4 124 217 292 403 7.96e-19 84.3
Msa0813670 AT5G57180.1 51.765 85 39 2 127 211 337 419 1.25e-18 84.0
Msa0813670 AT1G68520.1 41.880 117 50 3 119 217 283 399 2.74e-18 82.8
Msa0813670 AT2G24790.1 61.111 54 21 0 164 217 218 271 6.27e-13 66.6
Msa0813670 AT5G24930.1 53.226 62 29 0 156 217 276 337 8.36e-12 63.9
Msa0813670 AT5G57660.1 69.767 43 13 0 175 217 285 327 2.02e-11 62.8

Find 39 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAGTGGCCTTAGATATTT+TGG 0.178831 5_3:-44691438 None:intergenic
ACTTCATGTTCTTCTTTCTT+TGG 0.183818 5_3:-44689933 None:intergenic
GGTCAGACCGTGGTTCTCTT+TGG 0.228285 5_3:+44690318 Msa0813670:CDS
GCTCTCTCTTCTTCCAATAT+TGG 0.250193 5_3:-44691124 None:intergenic
TTTGAATTATCAAGAGGTTT+TGG 0.259887 5_3:+44690289 Msa0813670:CDS
AAAAGTGTGACCTTGATTCT+TGG 0.281388 5_3:-44691250 None:intergenic
TCGTTCTCTTCCAATTCTTT+AGG 0.292085 5_3:-44691533 None:intergenic
GAAGAGAAGCAAGTGTTCTT+AGG 0.336563 5_3:+44691149 Msa0813670:CDS
GTCAGACCGTGGTTCTCTTT+GGG 0.337914 5_3:+44690319 Msa0813670:CDS
AATATCTTCCAAAATATCTA+AGG 0.342626 5_3:+44691430 Msa0813670:three_prime_UTR
TCCTTCTCTTCCTAAAGAAT+TGG 0.347982 5_3:+44691523 Msa0813670:three_prime_UTR
GATGGGAGAAGTGCCAATAT+TGG 0.355037 5_3:+44691111 Msa0813670:intron
ATAGTAGTAATGAGCTTCAT+TGG 0.401933 5_3:+44690111 Msa0813670:CDS
GTGTAAGATTTGTTGAAGTT+TGG 0.413457 5_3:-44689981 None:intergenic
CTCATCTTTCCCTTCATCAA+AGG 0.415253 5_3:-44690159 None:intergenic
TCATCTTTCCCTTCATCAAA+GGG 0.428053 5_3:-44690158 None:intergenic
AAGAGAGAAAATTACAATGA+TGG 0.429279 5_3:+44690221 Msa0813670:CDS
GGTCTTTGAGTGGTAGCTTC+TGG 0.429886 5_3:-44689957 None:intergenic
GAAGAGAAGGACAAATTGAA+TGG 0.471175 5_3:-44691511 None:intergenic
TGAGCTTCATTGGGATATCA+TGG 0.472007 5_3:+44690121 Msa0813670:CDS
GAGGGATTTCCCTTTGATGA+AGG 0.484035 5_3:+44690149 Msa0813670:CDS
TCCAATTCTTTAGGAAGAGA+AGG 0.489389 5_3:-44691524 None:intergenic
ACTAACATAGGAGCCACTAT+TGG 0.497136 5_3:-44690372 None:intergenic
TAAGATTTGTTGAAGTTTGG+TGG 0.507600 5_3:-44689978 None:intergenic
TAGTAGTAATGAGCTTCATT+GGG 0.508412 5_3:+44690112 Msa0813670:CDS
AGGGATTTCCCTTTGATGAA+GGG 0.520507 5_3:+44690150 Msa0813670:CDS
TCATTGGGATATCATGGAAT+GGG 0.534580 5_3:+44690127 Msa0813670:CDS
TTCATTGGGATATCATGGAA+TGG 0.539426 5_3:+44690126 Msa0813670:CDS
AACATAGGAGCCACTATTGG+AGG 0.540947 5_3:-44690369 None:intergenic
TTTGAATTTGAATTATCAAG+AGG 0.541289 5_3:+44690283 Msa0813670:CDS
CGCTTTGTGAAGAGACATTG+AGG 0.551371 5_3:+44691379 Msa0813670:CDS
TGATAAAAGACCAAGAATCA+AGG 0.578251 5_3:+44691240 Msa0813670:CDS
ATAGGAGCCACTATTGGAGG+AGG 0.606351 5_3:-44690366 None:intergenic
TTGGGATATCATGGAATGGG+AGG 0.609318 5_3:+44690130 Msa0813670:CDS
GAAGTTTGGTGGTCTTTGAG+TGG 0.614300 5_3:-44689967 None:intergenic
TTGGATGCATGGTCAGACCG+TGG 0.632541 5_3:+44690308 Msa0813670:CDS
AGTGGGTGATGAAAAGAGTG+TGG 0.652358 5_3:+44690253 Msa0813670:CDS
TGGGATATCATGGAATGGGA+GGG 0.659236 5_3:+44690131 Msa0813670:CDS
CATTAGCCCAAAGAGAACCA+CGG 0.726854 5_3:-44690325 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATATAGTTGTTATA+TGG - chr5_3:44690529-44690548 None:intergenic 10.0%
!!! TAATTTTAAATAGTAACAAA+AGG - chr5_3:44690561-44690580 None:intergenic 10.0%
!!! TAATTTATTTTTTGTTTAGA+TGG + chr5_3:44691093-44691112 Msa0813670:intron 10.0%
!!! AATTTATTTTTTGTTTAGAT+GGG + chr5_3:44691094-44691113 Msa0813670:intron 10.0%
!!! TTTCTTTTTTCTTTTTTATT+GGG + chr5_3:44691295-44691314 Msa0813670:intron 10.0%
!! ATAATAATATAGTTGTTATA+TGG - chr5_3:44690529-44690548 None:intergenic 10.0%
!!! TAATTTTAAATAGTAACAAA+AGG - chr5_3:44690561-44690580 None:intergenic 10.0%
!!! TAATTTATTTTTTGTTTAGA+TGG + chr5_3:44691093-44691112 Msa0813670:intron 10.0%
!!! AATTTATTTTTTGTTTAGAT+GGG + chr5_3:44691094-44691113 Msa0813670:intron 10.0%
!!! TTTCTTTTTTCTTTTTTATT+GGG + chr5_3:44691295-44691314 Msa0813670:intron 10.0%
!! AAGAAAACAATATAAAACTT+AGG - chr5_3:44690469-44690488 None:intergenic 15.0%
!!! ATTGTTTTCTTATTCTTTTA+AGG + chr5_3:44690478-44690497 Msa0813670:intron 15.0%
!!! GTTTCTTTTTTCTTTTTTAT+TGG + chr5_3:44691294-44691313 Msa0813670:intron 15.0%
!! AAGAAAACAATATAAAACTT+AGG - chr5_3:44690469-44690488 None:intergenic 15.0%
!!! ATTGTTTTCTTATTCTTTTA+AGG + chr5_3:44690478-44690497 Msa0813670:intron 15.0%
!!! GTTTCTTTTTTCTTTTTTAT+TGG + chr5_3:44691294-44691313 Msa0813670:intron 15.0%
!!! AAAATTACAATGATGGTTTT+TGG + chr5_3:44690228-44690247 Msa0813670:CDS 20.0%
!!! AAATTACAATGATGGTTTTT+GGG + chr5_3:44690229-44690248 Msa0813670:CDS 20.0%
!! TTTGAATTTGAATTATCAAG+AGG + chr5_3:44690283-44690302 Msa0813670:CDS 20.0%
!! TTATATATGAAAGTGAAGAT+TGG - chr5_3:44690407-44690426 None:intergenic 20.0%
!!! TTTTTGGATAAGTTGTTATA+TGG - chr5_3:44690504-44690523 None:intergenic 20.0%
!! ATATAACAACTTATCCAAAA+AGG + chr5_3:44690503-44690522 Msa0813670:intron 20.0%
!!! TTCAACTTTTTCTACAAATA+TGG - chr5_3:44690588-44690607 None:intergenic 20.0%
!!! TTTGTCGATAACTAAATTTT+TGG + chr5_3:44690835-44690854 Msa0813670:intron 20.0%
!!! ATAACTAAATTTTTGGTGAT+AGG + chr5_3:44690842-44690861 Msa0813670:intron 20.0%
!!! GTAACATATTTAGTTCATTT+TGG + chr5_3:44690938-44690957 Msa0813670:intron 20.0%
!!! TTTTGTGATATTTTTGATGT+AGG + chr5_3:44691354-44691373 Msa0813670:intron 20.0%
!!! TTTGTGATATTTTTGATGTA+GGG + chr5_3:44691355-44691374 Msa0813670:intron 20.0%
!!! GATATTTTGGAAGATATTTT+AGG - chr5_3:44691428-44691447 None:intergenic 20.0%
!! AATATCTTCCAAAATATCTA+AGG + chr5_3:44691430-44691449 Msa0813670:three_prime_UTR 20.0%
!! AGAAAAAAAATACAAAGTAG+AGG - chr5_3:44691461-44691480 None:intergenic 20.0%
!!! AAAATTACAATGATGGTTTT+TGG + chr5_3:44690228-44690247 Msa0813670:CDS 20.0%
!!! AAATTACAATGATGGTTTTT+GGG + chr5_3:44690229-44690248 Msa0813670:CDS 20.0%
!! TTTGAATTTGAATTATCAAG+AGG + chr5_3:44690283-44690302 Msa0813670:CDS 20.0%
!! TTATATATGAAAGTGAAGAT+TGG - chr5_3:44690407-44690426 None:intergenic 20.0%
!!! TTTTTGGATAAGTTGTTATA+TGG - chr5_3:44690504-44690523 None:intergenic 20.0%
!! ATATAACAACTTATCCAAAA+AGG + chr5_3:44690503-44690522 Msa0813670:intron 20.0%
!!! TTCAACTTTTTCTACAAATA+TGG - chr5_3:44690588-44690607 None:intergenic 20.0%
!!! TTTGTCGATAACTAAATTTT+TGG + chr5_3:44690835-44690854 Msa0813670:intron 20.0%
!!! ATAACTAAATTTTTGGTGAT+AGG + chr5_3:44690842-44690861 Msa0813670:intron 20.0%
!!! GTAACATATTTAGTTCATTT+TGG + chr5_3:44690938-44690957 Msa0813670:intron 20.0%
!!! TTTTGTGATATTTTTGATGT+AGG + chr5_3:44691354-44691373 Msa0813670:intron 20.0%
!!! TTTGTGATATTTTTGATGTA+GGG + chr5_3:44691355-44691374 Msa0813670:intron 20.0%
!!! GATATTTTGGAAGATATTTT+AGG - chr5_3:44691428-44691447 None:intergenic 20.0%
!! AATATCTTCCAAAATATCTA+AGG + chr5_3:44691430-44691449 Msa0813670:three_prime_UTR 20.0%
!! AGAAAAAAAATACAAAGTAG+AGG - chr5_3:44691461-44691480 None:intergenic 20.0%
! AAGAGAGAAAATTACAATGA+TGG + chr5_3:44690221-44690240 Msa0813670:CDS 25.0%
!! TTTGAATTATCAAGAGGTTT+TGG + chr5_3:44690289-44690308 Msa0813670:CDS 25.0%
! TATTACTTAATTGACACCTA+CGG - chr5_3:44690705-44690724 None:intergenic 25.0%
! TTATTCGATCTATTCAATTG+TGG + chr5_3:44690806-44690825 Msa0813670:intron 25.0%
! AAGAGAGAAAATTACAATGA+TGG + chr5_3:44690221-44690240 Msa0813670:CDS 25.0%
!! TTTGAATTATCAAGAGGTTT+TGG + chr5_3:44690289-44690308 Msa0813670:CDS 25.0%
! TATTACTTAATTGACACCTA+CGG - chr5_3:44690705-44690724 None:intergenic 25.0%
! TTATTCGATCTATTCAATTG+TGG + chr5_3:44690806-44690825 Msa0813670:intron 25.0%
ACTTCATGTTCTTCTTTCTT+TGG - chr5_3:44689936-44689955 None:intergenic 30.0%
!! TAAGATTTGTTGAAGTTTGG+TGG - chr5_3:44689981-44690000 None:intergenic 30.0%
!! GTGTAAGATTTGTTGAAGTT+TGG - chr5_3:44689984-44690003 None:intergenic 30.0%
! CTACTATTACAAGTGTTTTG+TGG - chr5_3:44690098-44690117 None:intergenic 30.0%
ATAGTAGTAATGAGCTTCAT+TGG + chr5_3:44690111-44690130 Msa0813670:CDS 30.0%
TAGTAGTAATGAGCTTCATT+GGG + chr5_3:44690112-44690131 Msa0813670:CDS 30.0%
TGGATAATGAAGACTAACAT+AGG - chr5_3:44690387-44690406 None:intergenic 30.0%
! TAGTTGTTATATGGCCTTTT+TGG - chr5_3:44690520-44690539 None:intergenic 30.0%
! GCAAGAATAGTCATCAATTT+TGG - chr5_3:44690618-44690637 None:intergenic 30.0%
ATTACTTAATTGACACCTAC+GGG - chr5_3:44690704-44690723 None:intergenic 30.0%
!!! TATGCTGACTTTTGTTTAGA+TGG + chr5_3:44690723-44690742 Msa0813670:intron 30.0%
TGATAAAAGACCAAGAATCA+AGG + chr5_3:44691240-44691259 Msa0813670:CDS 30.0%
AAAAATACAAAGTAGAGGAG+TGG - chr5_3:44691456-44691475 None:intergenic 30.0%
ACTTCATGTTCTTCTTTCTT+TGG - chr5_3:44689936-44689955 None:intergenic 30.0%
!! TAAGATTTGTTGAAGTTTGG+TGG - chr5_3:44689981-44690000 None:intergenic 30.0%
!! GTGTAAGATTTGTTGAAGTT+TGG - chr5_3:44689984-44690003 None:intergenic 30.0%
! CTACTATTACAAGTGTTTTG+TGG - chr5_3:44690098-44690117 None:intergenic 30.0%
ATAGTAGTAATGAGCTTCAT+TGG + chr5_3:44690111-44690130 Msa0813670:CDS 30.0%
TAGTAGTAATGAGCTTCATT+GGG + chr5_3:44690112-44690131 Msa0813670:CDS 30.0%
TGGATAATGAAGACTAACAT+AGG - chr5_3:44690387-44690406 None:intergenic 30.0%
! TAGTTGTTATATGGCCTTTT+TGG - chr5_3:44690520-44690539 None:intergenic 30.0%
! GCAAGAATAGTCATCAATTT+TGG - chr5_3:44690618-44690637 None:intergenic 30.0%
ATTACTTAATTGACACCTAC+GGG - chr5_3:44690704-44690723 None:intergenic 30.0%
!!! TATGCTGACTTTTGTTTAGA+TGG + chr5_3:44690723-44690742 Msa0813670:intron 30.0%
TGATAAAAGACCAAGAATCA+AGG + chr5_3:44691240-44691259 Msa0813670:CDS 30.0%
AAAAATACAAAGTAGAGGAG+TGG - chr5_3:44691456-44691475 None:intergenic 30.0%
TTCATTGGGATATCATGGAA+TGG + chr5_3:44690126-44690145 Msa0813670:CDS 35.0%
TCATTGGGATATCATGGAAT+GGG + chr5_3:44690127-44690146 Msa0813670:CDS 35.0%
TCATCTTTCCCTTCATCAAA+GGG - chr5_3:44690161-44690180 None:intergenic 35.0%
!! AATGATGGTTTTTGGGAAGT+GGG + chr5_3:44690236-44690255 Msa0813670:CDS 35.0%
TAAAACTTAGGAGCCACTAT+TGG - chr5_3:44690457-44690476 None:intergenic 35.0%
TTGATCGCTTTCTGGATAAT+AGG + chr5_3:44690760-44690779 Msa0813670:intron 35.0%
GATAGGTAATCTTTGATGCT+TGG + chr5_3:44690859-44690878 Msa0813670:intron 35.0%
!! CAGCGTTTAATTTTCGAACT+TGG - chr5_3:44691222-44691241 None:intergenic 35.0%
! AAAAGTGTGACCTTGATTCT+TGG - chr5_3:44691253-44691272 None:intergenic 35.0%
GAAGAGAAGGACAAATTGAA+TGG - chr5_3:44691514-44691533 None:intergenic 35.0%
TCCTTCTCTTCCTAAAGAAT+TGG + chr5_3:44691523-44691542 Msa0813670:three_prime_UTR 35.0%
! TCCAATTCTTTAGGAAGAGA+AGG - chr5_3:44691527-44691546 None:intergenic 35.0%
TCGTTCTCTTCCAATTCTTT+AGG - chr5_3:44691536-44691555 None:intergenic 35.0%
AAGAGATGAAGTGTATCTCA+TGG - chr5_3:44689907-44689926 None:intergenic 35.0%
TTCATTGGGATATCATGGAA+TGG + chr5_3:44690126-44690145 Msa0813670:CDS 35.0%
TCATTGGGATATCATGGAAT+GGG + chr5_3:44690127-44690146 Msa0813670:CDS 35.0%
TCATCTTTCCCTTCATCAAA+GGG - chr5_3:44690161-44690180 None:intergenic 35.0%
!! AATGATGGTTTTTGGGAAGT+GGG + chr5_3:44690236-44690255 Msa0813670:CDS 35.0%
TAAAACTTAGGAGCCACTAT+TGG - chr5_3:44690457-44690476 None:intergenic 35.0%
TTGATCGCTTTCTGGATAAT+AGG + chr5_3:44690760-44690779 Msa0813670:intron 35.0%
GATAGGTAATCTTTGATGCT+TGG + chr5_3:44690859-44690878 Msa0813670:intron 35.0%
!! CAGCGTTTAATTTTCGAACT+TGG - chr5_3:44691222-44691241 None:intergenic 35.0%
! AAAAGTGTGACCTTGATTCT+TGG - chr5_3:44691253-44691272 None:intergenic 35.0%
GAAGAGAAGGACAAATTGAA+TGG - chr5_3:44691514-44691533 None:intergenic 35.0%
TCCTTCTCTTCCTAAAGAAT+TGG + chr5_3:44691523-44691542 Msa0813670:three_prime_UTR 35.0%
! TCCAATTCTTTAGGAAGAGA+AGG - chr5_3:44691527-44691546 None:intergenic 35.0%
TCGTTCTCTTCCAATTCTTT+AGG - chr5_3:44691536-44691555 None:intergenic 35.0%
TGAGCTTCATTGGGATATCA+TGG + chr5_3:44690121-44690140 Msa0813670:CDS 40.0%
AGGGATTTCCCTTTGATGAA+GGG + chr5_3:44690150-44690169 Msa0813670:CDS 40.0%
CTCATCTTTCCCTTCATCAA+AGG - chr5_3:44690162-44690181 None:intergenic 40.0%
!! CAATGATGGTTTTTGGGAAG+TGG + chr5_3:44690235-44690254 Msa0813670:CDS 40.0%
!!! ATCAAGAGGTTTTGGATGCA+TGG + chr5_3:44690297-44690316 Msa0813670:CDS 40.0%
! TCATTTTCCTCCTCCAATAG+TGG + chr5_3:44690359-44690378 Msa0813670:CDS 40.0%
ACTAACATAGGAGCCACTAT+TGG - chr5_3:44690375-44690394 None:intergenic 40.0%
! TCATTTTCCTCCTCCAATAG+TGG + chr5_3:44690359-44690378 Msa0813670:CDS 40.0%
! CGCATAAAGATTTTACCCGT+AGG + chr5_3:44690686-44690705 Msa0813670:intron 40.0%
AACTCTTGTTGATCGCTTTC+TGG + chr5_3:44690752-44690771 Msa0813670:intron 40.0%
GCTCTCTCTTCTTCCAATAT+TGG - chr5_3:44691127-44691146 None:intergenic 40.0%
GAAGAGAAGCAAGTGTTCTT+AGG + chr5_3:44691149-44691168 Msa0813670:CDS 40.0%
!! AGGAGTGGCCTTAGATATTT+TGG - chr5_3:44691441-44691460 None:intergenic 40.0%
TGAGCTTCATTGGGATATCA+TGG + chr5_3:44690121-44690140 Msa0813670:CDS 40.0%
AGGGATTTCCCTTTGATGAA+GGG + chr5_3:44690150-44690169 Msa0813670:CDS 40.0%
CTCATCTTTCCCTTCATCAA+AGG - chr5_3:44690162-44690181 None:intergenic 40.0%
!! CAATGATGGTTTTTGGGAAG+TGG + chr5_3:44690235-44690254 Msa0813670:CDS 40.0%
!!! ATCAAGAGGTTTTGGATGCA+TGG + chr5_3:44690297-44690316 Msa0813670:CDS 40.0%
! TCATTTTCCTCCTCCAATAG+TGG + chr5_3:44690359-44690378 Msa0813670:CDS 40.0%
ACTAACATAGGAGCCACTAT+TGG - chr5_3:44690375-44690394 None:intergenic 40.0%
! TCATTTTCCTCCTCCAATAG+TGG + chr5_3:44690359-44690378 Msa0813670:CDS 40.0%
! CGCATAAAGATTTTACCCGT+AGG + chr5_3:44690686-44690705 Msa0813670:intron 40.0%
AACTCTTGTTGATCGCTTTC+TGG + chr5_3:44690752-44690771 Msa0813670:intron 40.0%
GCTCTCTCTTCTTCCAATAT+TGG - chr5_3:44691127-44691146 None:intergenic 40.0%
GAAGAGAAGCAAGTGTTCTT+AGG + chr5_3:44691149-44691168 Msa0813670:CDS 40.0%
!! AGGAGTGGCCTTAGATATTT+TGG - chr5_3:44691441-44691460 None:intergenic 40.0%
! GAAGTTTGGTGGTCTTTGAG+TGG - chr5_3:44689970-44689989 None:intergenic 45.0%
TTGGGATATCATGGAATGGG+AGG + chr5_3:44690130-44690149 Msa0813670:CDS 45.0%
TGGGATATCATGGAATGGGA+GGG + chr5_3:44690131-44690150 Msa0813670:CDS 45.0%
GAGGGATTTCCCTTTGATGA+AGG + chr5_3:44690149-44690168 Msa0813670:CDS 45.0%
AGTGGGTGATGAAAAGAGTG+TGG + chr5_3:44690253-44690272 Msa0813670:CDS 45.0%
CATTAGCCCAAAGAGAACCA+CGG - chr5_3:44690328-44690347 None:intergenic 45.0%
AACATAGGAGCCACTATTGG+AGG - chr5_3:44690372-44690391 None:intergenic 45.0%
AACTTAGGAGCCACTATTGG+AGG - chr5_3:44690454-44690473 None:intergenic 45.0%
!! GATGGGAGAAGTGCCAATAT+TGG + chr5_3:44691111-44691130 Msa0813670:intron 45.0%
CGCTTTGTGAAGAGACATTG+AGG + chr5_3:44691379-44691398 Msa0813670:CDS 45.0%
! GAAGTTTGGTGGTCTTTGAG+TGG - chr5_3:44689970-44689989 None:intergenic 45.0%
TTGGGATATCATGGAATGGG+AGG + chr5_3:44690130-44690149 Msa0813670:CDS 45.0%
TGGGATATCATGGAATGGGA+GGG + chr5_3:44690131-44690150 Msa0813670:CDS 45.0%
GAGGGATTTCCCTTTGATGA+AGG + chr5_3:44690149-44690168 Msa0813670:CDS 45.0%
AGTGGGTGATGAAAAGAGTG+TGG + chr5_3:44690253-44690272 Msa0813670:CDS 45.0%
CATTAGCCCAAAGAGAACCA+CGG - chr5_3:44690328-44690347 None:intergenic 45.0%
AACATAGGAGCCACTATTGG+AGG - chr5_3:44690372-44690391 None:intergenic 45.0%
AACTTAGGAGCCACTATTGG+AGG - chr5_3:44690454-44690473 None:intergenic 45.0%
!! GATGGGAGAAGTGCCAATAT+TGG + chr5_3:44691111-44691130 Msa0813670:intron 45.0%
CGCTTTGTGAAGAGACATTG+AGG + chr5_3:44691379-44691398 Msa0813670:CDS 45.0%
!! TAAACAAAAAATAAATTATA+AGG - chr5_3:44691091-44691110 None:intergenic 5.0%
!!! TATTATTATTTTTTTAAAGA+AGG - chr5_3:44691586-44691605 None:intergenic 5.0%
!! TAAACAAAAAATAAATTATA+AGG - chr5_3:44691091-44691110 None:intergenic 5.0%
!!! TATTATTATTTTTTTAAAGA+AGG - chr5_3:44691586-44691605 None:intergenic 5.0%
GGTCTTTGAGTGGTAGCTTC+TGG - chr5_3:44689960-44689979 None:intergenic 50.0%
GTCAGACCGTGGTTCTCTTT+GGG + chr5_3:44690319-44690338 Msa0813670:CDS 50.0%
ATAGGAGCCACTATTGGAGG+AGG - chr5_3:44690369-44690388 None:intergenic 50.0%
TTAGGAGCCACTATTGGAGG+AGG - chr5_3:44690451-44690470 None:intergenic 50.0%
GGTCTTTGAGTGGTAGCTTC+TGG - chr5_3:44689960-44689979 None:intergenic 50.0%
GTCAGACCGTGGTTCTCTTT+GGG + chr5_3:44690319-44690338 Msa0813670:CDS 50.0%
ATAGGAGCCACTATTGGAGG+AGG - chr5_3:44690369-44690388 None:intergenic 50.0%
TTAGGAGCCACTATTGGAGG+AGG - chr5_3:44690451-44690470 None:intergenic 50.0%
TTGGATGCATGGTCAGACCG+TGG + chr5_3:44690308-44690327 Msa0813670:CDS 55.0%
GGTCAGACCGTGGTTCTCTT+TGG + chr5_3:44690318-44690337 Msa0813670:CDS 55.0%
TTGGATGCATGGTCAGACCG+TGG + chr5_3:44690308-44690327 Msa0813670:CDS 55.0%
GGTCAGACCGTGGTTCTCTT+TGG + chr5_3:44690318-44690337 Msa0813670:CDS 55.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 44689906 44691615 44689906 ID=Msa0813670;Name=Msa0813670
chr5_3 mRNA 44689906 44691615 44689906 ID=Msa0813670-mRNA-1;Parent=Msa0813670;Name=Msa0813670-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.5|0.33|1|1|1|3|216|218
chr5_3 exon 44689906 44690388 44689906 ID=Msa0813670-mRNA-1:exon:13754;Parent=Msa0813670-mRNA-1
chr5_3 exon 44691112 44691261 44691112 ID=Msa0813670-mRNA-1:exon:13755;Parent=Msa0813670-mRNA-1
chr5_3 exon 44691376 44691615 44691376 ID=Msa0813670-mRNA-1:exon:13756;Parent=Msa0813670-mRNA-1
chr5_3 CDS 44689906 44690388 44689906 ID=Msa0813670-mRNA-1:cds;Parent=Msa0813670-mRNA-1
chr5_3 CDS 44691112 44691261 44691112 ID=Msa0813670-mRNA-1:cds;Parent=Msa0813670-mRNA-1
chr5_3 CDS 44691376 44691399 44691376 ID=Msa0813670-mRNA-1:cds;Parent=Msa0813670-mRNA-1
chr5_3 three_prime_UTR 44691400 44691615 44691400 ID=Msa0813670-mRNA-1:three_prime_utr;Parent=Msa0813670-mRNA-1
Gene Sequence

>Msa0813670

ATGAGATACACTTCATCTCTTAGAAGTCCAAAGAAAGAAGAACATGAAGTACCAGAAGCTACCACTCAAAGACCACCAAACTTCAACAAATCTTACACTAATGAAGATTTCTATCTTTTCGACGAACTCGAAGAATACTTGAACATTGAAGAAGAAGAAGAAGAAGAAGAAGAACAAAAGTTATCATCACCACAAAACACTTGTAATAGTAGTAATGAGCTTCATTGGGATATCATGGAATGGGAGGGATTTCCCTTTGATGAAGGGAAAGATGAGAACATAAGCAAATGCAATTATGAAGAGAAGAAGATTATAAAGAGAGAAAATTACAATGATGGTTTTTGGGAAGTGGGTGATGAAAAGAGTGTGGCTTTGAATTTGAATTTGAATTATCAAGAGGTTTTGGATGCATGGTCAGACCGTGGTTCTCTTTGGGCTAATGATTGTTCTCTTTCATTTTCCTCCTCCAATAGTGGCTCCTATATGGGAGAAGTGCCAATATTGGAAGAAGAGAGAGCAAGAAGAGAAGCAAGTGTTCTTAGGTATAAAGAAAAACGTCAGAACAGATTGTTCTCAAAGAAGATAAGATACCAAGTTCGAAAATTAAACGCTGATAAAAGACCAAGAATCAAGGGTCGCTTTGTGAAGAGACATTGA

Protein sequence

>Msa0813670

MRYTSSLRSPKKEEHEVPEATTQRPPNFNKSYTNEDFYLFDELEEYLNIEEEEEEEEEQKLSSPQNTCNSSNELHWDIMEWEGFPFDEGKDENISKCNYEEKKIIKRENYNDGFWEVGDEKSVALNLNLNYQEVLDAWSDRGSLWANDCSLSFSSSNSGSYMGEVPILEEERARREASVLRYKEKRQNRLFSKKIRYQVRKLNADKRPRIKGRFVKRH*