AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0498650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0498650 MtrunA17_Chr3g0096311 89.714 175 18 0 55 229 6 180 4.59e-113 321
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0498650 AT1G06500.3 40.789 152 68 4 76 227 2 131 1.36e-29 107
Msa0498650 AT1G06500.1 40.789 152 68 4 76 227 2 131 1.36e-29 107
Msa0498650 AT1G06500.2 40.789 152 68 4 76 227 2 131 1.36e-29 107
Msa0498650 AT1G06500.4 40.789 152 68 4 76 227 2 131 1.36e-29 107

Find 71 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTGCTCCATCAAATATT+TGG 0.194483 3_4:+35701103 Msa0498650:CDS
ACATTGGATGAATTTAAATA+TGG 0.196305 3_4:+35700788 Msa0498650:CDS
CATGCATCCATCCATGATTT+TGG 0.208551 3_4:-35701136 None:intergenic
TTCCTTGTTGATGTGAATTC+TGG 0.218734 3_4:-35700700 None:intergenic
GGATGCATGACTTGTTATTT+AGG 0.221973 3_4:+35701150 Msa0498650:exon
GCCTCTCCTCCGCTTTCTTC+TGG 0.239178 3_4:-35700911 None:intergenic
GGAAGAGAAACATTTAAATT+AGG 0.257008 3_4:+35701034 Msa0498650:CDS
TGATCGTTACTGTCTGAAAA+TGG 0.262305 3_4:+35701244 Msa0498650:intron
TTAATCTCAAGTAGTGTCTT+TGG 0.263305 3_4:+35701384 Msa0498650:three_prime_UTR
TATCGACTACTTCAAATAAA+TGG 0.302615 3_4:+35700828 Msa0498650:CDS
ACACCGTGTTCGGAAAATTC+TGG 0.307317 3_4:-35700748 None:intergenic
TAATCTCAAGTAGTGTCTTT+GGG 0.327001 3_4:+35701385 Msa0498650:three_prime_UTR
GGGCTGGTGTTTGGAACTAA+TGG 0.328127 3_4:+35701405 Msa0498650:three_prime_UTR
ATCCAATGTTGTCATTCCTT+TGG 0.364028 3_4:-35700774 None:intergenic
CATTGGATGAATTTAAATAT+GGG 0.366867 3_4:+35700789 Msa0498650:CDS
TGAAGTAGTCGATAAGCTTT+CGG 0.377284 3_4:-35700819 None:intergenic
AGTGTCTTTGGGCTGGTGTT+TGG 0.380506 3_4:+35701396 Msa0498650:three_prime_UTR
AACTCTGTCATTAGGTAGAT+TGG 0.399038 3_4:+35700219 Msa0498650:CDS
GATCTTCATTGCCAAAATCA+TGG 0.401657 3_4:+35701125 Msa0498650:CDS
CCTTTGGCTAACACCGTGTT+CGG 0.405151 3_4:-35700758 None:intergenic
TGTTATTTAGGATTTAGATT+TGG 0.423298 3_4:+35701162 Msa0498650:three_prime_UTR
ACTGTCTGAAAATGGGAATC+TGG 0.437095 3_4:+35701252 Msa0498650:intron
CACCGTGTTCGGAAAATTCT+GGG 0.447219 3_4:-35700747 None:intergenic
CATCCACCTTAGAAATCTTC+CGG 0.448289 3_4:-35699759 None:intergenic
ATGAAGATCCAAATATTTGA+TGG 0.453836 3_4:-35701111 None:intergenic
GTTGACTCTTGCCTCCGTCT+TGG 0.455211 3_4:-35700889 None:intergenic
CGGAGGAGAGGCAGAGAAGA+AGG 0.461047 3_4:+35700922 Msa0498650:CDS
GTGTAAACAAGCTAGGCAAA+AGG 0.464270 3_4:+35701074 Msa0498650:CDS
GGTGCAGTAATTGCGTCTCC+TGG 0.468464 3_4:+35701183 Msa0498650:three_prime_UTR
GATCGTTACTGTCTGAAAAT+GGG 0.472939 3_4:+35701245 Msa0498650:intron
AGGAAAAGAGCTGTAGAAGA+AGG 0.487958 3_4:+35701013 Msa0498650:CDS
GTGTGTGAAACTCTGTCATT+AGG 0.489954 3_4:+35700211 Msa0498650:CDS
CTCAAGTAGTGTCTTTGGGC+TGG 0.490900 3_4:+35701389 Msa0498650:three_prime_UTR
AAGGAGTTGCTTCTGATGAC+AGG 0.492091 3_4:+35700242 Msa0498650:CDS
TTAGGTGTTCTCCGAGGCTA+TGG 0.498800 3_4:+35701052 Msa0498650:CDS
GACAAAAGCACAAGGTGTTA+CGG 0.499816 3_4:+35700673 Msa0498650:CDS
GACTACTTCAAATAAATGGT+GGG 0.503994 3_4:+35700832 Msa0498650:CDS
GAGAAGAAGGAATGTGAAAC+CGG 0.508809 3_4:+35700935 Msa0498650:CDS
GGAAATAAAAGCGTTGAAAG+TGG 0.510593 3_4:+35700719 Msa0498650:CDS
CTTCAAATAAATGGTGGGGA+TGG 0.520192 3_4:+35700837 Msa0498650:CDS
TGTAAACAAGCTAGGCAAAA+GGG 0.535406 3_4:+35701075 Msa0498650:CDS
TTTCCGGAAGATTTCTAAGG+TGG 0.537198 3_4:+35699756 Msa0498650:CDS
ACCAGAAGAAAGCGGAGGAG+AGG 0.544142 3_4:+35700910 Msa0498650:CDS
TTCATTGCCAAAATCATGGA+TGG 0.547716 3_4:+35701129 Msa0498650:CDS
GATTTCTAAGGTGGATGTGG+TGG 0.550698 3_4:+35699765 Msa0498650:CDS
CGACTACTTCAAATAAATGG+TGG 0.553601 3_4:+35700831 Msa0498650:CDS
CCGAACACGGTGTTAGCCAA+AGG 0.554812 3_4:+35700758 Msa0498650:CDS
TAAGAAGCCATGCAGAATGA+TGG 0.555153 3_4:-35701283 None:intergenic
GAAGATTTCTAAGGTGGATG+TGG 0.568981 3_4:+35699762 Msa0498650:CDS
GTTTCACACACATACGCTGT+TGG 0.574077 3_4:-35700199 None:intergenic
TCGACTGTGTTTGCTACCAT+CGG 0.586233 3_4:-35699731 None:intergenic
AATAACACAGTGGAATTGAT+CGG 0.588935 3_4:+35700170 Msa0498650:intron
CTGTCATTAGGTAGATTGGA+AGG 0.599145 3_4:+35700223 Msa0498650:CDS
GCTTGTTTACACCATAGCCT+CGG 0.602789 3_4:-35701063 None:intergenic
GGCTATGGTGTAAACAAGCT+AGG 0.604381 3_4:+35701067 Msa0498650:CDS
TGTTGTACCATCATTCTGCA+TGG 0.619129 3_4:+35701276 Msa0498650:three_prime_UTR
ACTACTTCAAATAAATGGTG+GGG 0.619643 3_4:+35700833 Msa0498650:CDS
GAAATTTGCAGTGTAGCCGA+TGG 0.629562 3_4:+35699715 Msa0498650:CDS
GACAGCTCATGTTACAAACC+AGG 0.629970 3_4:-35701201 None:intergenic
TGCAACAAGCAAATGATGGG+AGG 0.634860 3_4:+35700651 Msa0498650:CDS
AGTCAACCAGAAGAAAGCGG+AGG 0.636989 3_4:+35700905 Msa0498650:CDS
AAGAGTCAACCAGAAGAAAG+CGG 0.639731 3_4:+35700902 Msa0498650:CDS
AGCCAAAGGAATGACAACAT+TGG 0.640708 3_4:+35700772 Msa0498650:CDS
CACCAGAATTCACATCAACA+AGG 0.644361 3_4:+35700698 Msa0498650:CDS
GTAGTCGATAAGCTTTCGGA+CGG 0.669763 3_4:-35700815 None:intergenic
CATCTTTGTTGAGATCTGTG+AGG 0.675369 3_4:+35700993 Msa0498650:CDS
AGTAGTGAAGAAACTCGTCA+AGG 0.678227 3_4:+35700968 Msa0498650:CDS
CGTACTGACACAAACCAAGA+CGG 0.693330 3_4:+35700875 Msa0498650:CDS
GATGGGAGGACAAAAGCACA+AGG 0.714490 3_4:+35700665 Msa0498650:CDS
TTTAAATTAGGTGTTCTCCG+AGG 0.721425 3_4:+35701046 Msa0498650:CDS
ACTGACACAAACCAAGACGG+AGG 0.740979 3_4:+35700878 Msa0498650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAAATTACAAATTCTATA+TGG - chr3_4:35700488-35700507 None:intergenic 15.0%
!! CATAAATTACAAATTCTATA+TGG - chr3_4:35700488-35700507 None:intergenic 15.0%
!! ACGATAAATGTTAATTGATA+TGG + chr3_4:35700548-35700567 Msa0498650:intron 20.0%
!! ACATTGGATGAATTTAAATA+TGG + chr3_4:35700788-35700807 Msa0498650:CDS 20.0%
!! CATTGGATGAATTTAAATAT+GGG + chr3_4:35700789-35700808 Msa0498650:CDS 20.0%
!!! TGTTATTTAGGATTTAGATT+TGG + chr3_4:35701162-35701181 Msa0498650:three_prime_UTR 20.0%
!! ACGATAAATGTTAATTGATA+TGG + chr3_4:35700548-35700567 Msa0498650:intron 20.0%
!! ACATTGGATGAATTTAAATA+TGG + chr3_4:35700788-35700807 Msa0498650:CDS 20.0%
!! CATTGGATGAATTTAAATAT+GGG + chr3_4:35700789-35700808 Msa0498650:CDS 20.0%
!!! TGTTATTTAGGATTTAGATT+TGG + chr3_4:35701162-35701181 Msa0498650:three_prime_UTR 20.0%
!!! CTGTGTTATTGGATTTTTTT+GGG - chr3_4:35700160-35700179 None:intergenic 25.0%
!!! ACTGTGTTATTGGATTTTTT+TGG - chr3_4:35700161-35700180 None:intergenic 25.0%
! AAAAAAATCCAATAACACAG+TGG + chr3_4:35700160-35700179 Msa0498650:intron 25.0%
! AAATGGAACATAGAATGTTT+AGG + chr3_4:35700335-35700354 Msa0498650:intron 25.0%
! ATTCTATATGGTATCATAGT+AGG - chr3_4:35700476-35700495 None:intergenic 25.0%
!! TATCGACTACTTCAAATAAA+TGG + chr3_4:35700828-35700847 Msa0498650:CDS 25.0%
! GGAAGAGAAACATTTAAATT+AGG + chr3_4:35701034-35701053 Msa0498650:CDS 25.0%
! ATATTGCTCCATCAAATATT+TGG + chr3_4:35701103-35701122 Msa0498650:CDS 25.0%
! ATGAAGATCCAAATATTTGA+TGG - chr3_4:35701114-35701133 None:intergenic 25.0%
!!! CTGTGTTATTGGATTTTTTT+GGG - chr3_4:35700160-35700179 None:intergenic 25.0%
!!! ACTGTGTTATTGGATTTTTT+TGG - chr3_4:35700161-35700180 None:intergenic 25.0%
! AAAAAAATCCAATAACACAG+TGG + chr3_4:35700160-35700179 Msa0498650:intron 25.0%
! AAATGGAACATAGAATGTTT+AGG + chr3_4:35700335-35700354 Msa0498650:intron 25.0%
! ATTCTATATGGTATCATAGT+AGG - chr3_4:35700476-35700495 None:intergenic 25.0%
!! TATCGACTACTTCAAATAAA+TGG + chr3_4:35700828-35700847 Msa0498650:CDS 25.0%
! GGAAGAGAAACATTTAAATT+AGG + chr3_4:35701034-35701053 Msa0498650:CDS 25.0%
! ATATTGCTCCATCAAATATT+TGG + chr3_4:35701103-35701122 Msa0498650:CDS 25.0%
! ATGAAGATCCAAATATTTGA+TGG - chr3_4:35701114-35701133 None:intergenic 25.0%
AACAGCATAACAGTCATATA+TGG + chr3_4:35700029-35700048 Msa0498650:intron 30.0%
AATAACACAGTGGAATTGAT+CGG + chr3_4:35700170-35700189 Msa0498650:intron 30.0%
GAAAGATGTGGATAGAATAT+AGG + chr3_4:35700305-35700324 Msa0498650:intron 30.0%
AGAATATAGGCTATTGGAAA+TGG + chr3_4:35700318-35700337 Msa0498650:intron 30.0%
TTTCGATAATGTAATCAGTG+AGG - chr3_4:35700453-35700472 None:intergenic 30.0%
! TTTTGCAACAAGCAAATGAT+GGG + chr3_4:35700648-35700667 Msa0498650:CDS 30.0%
GACTACTTCAAATAAATGGT+GGG + chr3_4:35700832-35700851 Msa0498650:CDS 30.0%
ACTACTTCAAATAAATGGTG+GGG + chr3_4:35700833-35700852 Msa0498650:CDS 30.0%
! TTCACTACTTTCAACTTTTC+CGG - chr3_4:35700957-35700976 None:intergenic 30.0%
TTAATCTCAAGTAGTGTCTT+TGG + chr3_4:35701384-35701403 Msa0498650:three_prime_UTR 30.0%
TAATCTCAAGTAGTGTCTTT+GGG + chr3_4:35701385-35701404 Msa0498650:three_prime_UTR 30.0%
AACAGCATAACAGTCATATA+TGG + chr3_4:35700029-35700048 Msa0498650:intron 30.0%
AATAACACAGTGGAATTGAT+CGG + chr3_4:35700170-35700189 Msa0498650:intron 30.0%
GAAAGATGTGGATAGAATAT+AGG + chr3_4:35700305-35700324 Msa0498650:intron 30.0%
AGAATATAGGCTATTGGAAA+TGG + chr3_4:35700318-35700337 Msa0498650:intron 30.0%
TTTCGATAATGTAATCAGTG+AGG - chr3_4:35700453-35700472 None:intergenic 30.0%
! TTTTGCAACAAGCAAATGAT+GGG + chr3_4:35700648-35700667 Msa0498650:CDS 30.0%
GACTACTTCAAATAAATGGT+GGG + chr3_4:35700832-35700851 Msa0498650:CDS 30.0%
ACTACTTCAAATAAATGGTG+GGG + chr3_4:35700833-35700852 Msa0498650:CDS 30.0%
! TTCACTACTTTCAACTTTTC+CGG - chr3_4:35700957-35700976 None:intergenic 30.0%
TTAATCTCAAGTAGTGTCTT+TGG + chr3_4:35701384-35701403 Msa0498650:three_prime_UTR 30.0%
TAATCTCAAGTAGTGTCTTT+GGG + chr3_4:35701385-35701404 Msa0498650:three_prime_UTR 30.0%
! AGTTTTCCGGAAGATTTCTA+AGG + chr3_4:35699753-35699772 Msa0498650:CDS 35.0%
!! ATGTGGTGGTTTTTAGGAAT+AGG + chr3_4:35699779-35699798 Msa0498650:CDS 35.0%
! TCGAATTGTTTCAGTCTTGT+AGG + chr3_4:35699852-35699871 Msa0498650:intron 35.0%
! TTGTTTCAGTCTTGTAGGAA+TGG + chr3_4:35699857-35699876 Msa0498650:intron 35.0%
!! CCATTGTTTCTCTTTTCCAT+CGG - chr3_4:35699923-35699942 None:intergenic 35.0%
CCTGCTGAGAAAATTTAGTT+TGG - chr3_4:35699951-35699970 None:intergenic 35.0%
! CCAAACTAAATTTTCTCAGC+AGG + chr3_4:35699948-35699967 Msa0498650:intron 35.0%
GCATAACAGTCATATATGGT+CGG + chr3_4:35700033-35700052 Msa0498650:intron 35.0%
!!! ATTTTTTTGGGTCTCTTGCA+TGG - chr3_4:35700148-35700167 None:intergenic 35.0%
GATCAATTCCACTGTGTTAT+TGG - chr3_4:35700171-35700190 None:intergenic 35.0%
AACTCTGTCATTAGGTAGAT+TGG + chr3_4:35700219-35700238 Msa0498650:CDS 35.0%
! TTTTGTCAGCAGTTAAGTAG+TGG + chr3_4:35700269-35700288 Msa0498650:intron 35.0%
TGAAGTGATCATGAAAGATG+TGG + chr3_4:35700293-35700312 Msa0498650:intron 35.0%
GTGGATAGAATATAGGCTAT+TGG + chr3_4:35700312-35700331 Msa0498650:intron 35.0%
!! GTAGAAGCGCTGAAATAATA+TGG + chr3_4:35700377-35700396 Msa0498650:intron 35.0%
AACTTGTCAGAAAGCTGTTA+TGG + chr3_4:35700401-35700420 Msa0498650:intron 35.0%
AAAGCTGTTATGGTGACATT+CGG + chr3_4:35700411-35700430 Msa0498650:intron 35.0%
GTTAGAGATAGAAGTGAATG+TGG - chr3_4:35700524-35700543 None:intergenic 35.0%
! GTTTTGCAACAAGCAAATGA+TGG + chr3_4:35700647-35700666 Msa0498650:CDS 35.0%
TTCCTTGTTGATGTGAATTC+TGG - chr3_4:35700703-35700722 None:intergenic 35.0%
!! GGAAATAAAAGCGTTGAAAG+TGG + chr3_4:35700719-35700738 Msa0498650:CDS 35.0%
ATCCAATGTTGTCATTCCTT+TGG - chr3_4:35700777-35700796 None:intergenic 35.0%
TGAAGTAGTCGATAAGCTTT+CGG - chr3_4:35700822-35700841 None:intergenic 35.0%
CGACTACTTCAAATAAATGG+TGG + chr3_4:35700831-35700850 Msa0498650:CDS 35.0%
TTTAAATTAGGTGTTCTCCG+AGG + chr3_4:35701046-35701065 Msa0498650:CDS 35.0%
TGTAAACAAGCTAGGCAAAA+GGG + chr3_4:35701075-35701094 Msa0498650:CDS 35.0%
GATCTTCATTGCCAAAATCA+TGG + chr3_4:35701125-35701144 Msa0498650:CDS 35.0%
TTCATTGCCAAAATCATGGA+TGG + chr3_4:35701129-35701148 Msa0498650:CDS 35.0%
!! GGATGCATGACTTGTTATTT+AGG + chr3_4:35701150-35701169 Msa0498650:exon 35.0%
TGATCGTTACTGTCTGAAAA+TGG + chr3_4:35701244-35701263 Msa0498650:intron 35.0%
GATCGTTACTGTCTGAAAAT+GGG + chr3_4:35701245-35701264 Msa0498650:intron 35.0%
! AGTTTTCCGGAAGATTTCTA+AGG + chr3_4:35699753-35699772 Msa0498650:CDS 35.0%
!! ATGTGGTGGTTTTTAGGAAT+AGG + chr3_4:35699779-35699798 Msa0498650:CDS 35.0%
! TCGAATTGTTTCAGTCTTGT+AGG + chr3_4:35699852-35699871 Msa0498650:intron 35.0%
! TTGTTTCAGTCTTGTAGGAA+TGG + chr3_4:35699857-35699876 Msa0498650:intron 35.0%
!! CCATTGTTTCTCTTTTCCAT+CGG - chr3_4:35699923-35699942 None:intergenic 35.0%
CCTGCTGAGAAAATTTAGTT+TGG - chr3_4:35699951-35699970 None:intergenic 35.0%
! CCAAACTAAATTTTCTCAGC+AGG + chr3_4:35699948-35699967 Msa0498650:intron 35.0%
GCATAACAGTCATATATGGT+CGG + chr3_4:35700033-35700052 Msa0498650:intron 35.0%
!!! ATTTTTTTGGGTCTCTTGCA+TGG - chr3_4:35700148-35700167 None:intergenic 35.0%
GATCAATTCCACTGTGTTAT+TGG - chr3_4:35700171-35700190 None:intergenic 35.0%
AACTCTGTCATTAGGTAGAT+TGG + chr3_4:35700219-35700238 Msa0498650:CDS 35.0%
! TTTTGTCAGCAGTTAAGTAG+TGG + chr3_4:35700269-35700288 Msa0498650:intron 35.0%
TGAAGTGATCATGAAAGATG+TGG + chr3_4:35700293-35700312 Msa0498650:intron 35.0%
GTGGATAGAATATAGGCTAT+TGG + chr3_4:35700312-35700331 Msa0498650:intron 35.0%
!! GTAGAAGCGCTGAAATAATA+TGG + chr3_4:35700377-35700396 Msa0498650:intron 35.0%
AACTTGTCAGAAAGCTGTTA+TGG + chr3_4:35700401-35700420 Msa0498650:intron 35.0%
AAAGCTGTTATGGTGACATT+CGG + chr3_4:35700411-35700430 Msa0498650:intron 35.0%
GTTAGAGATAGAAGTGAATG+TGG - chr3_4:35700524-35700543 None:intergenic 35.0%
! GTTTTGCAACAAGCAAATGA+TGG + chr3_4:35700647-35700666 Msa0498650:CDS 35.0%
TTCCTTGTTGATGTGAATTC+TGG - chr3_4:35700703-35700722 None:intergenic 35.0%
!! GGAAATAAAAGCGTTGAAAG+TGG + chr3_4:35700719-35700738 Msa0498650:CDS 35.0%
ATCCAATGTTGTCATTCCTT+TGG - chr3_4:35700777-35700796 None:intergenic 35.0%
TGAAGTAGTCGATAAGCTTT+CGG - chr3_4:35700822-35700841 None:intergenic 35.0%
CGACTACTTCAAATAAATGG+TGG + chr3_4:35700831-35700850 Msa0498650:CDS 35.0%
TTTAAATTAGGTGTTCTCCG+AGG + chr3_4:35701046-35701065 Msa0498650:CDS 35.0%
TGTAAACAAGCTAGGCAAAA+GGG + chr3_4:35701075-35701094 Msa0498650:CDS 35.0%
GATCTTCATTGCCAAAATCA+TGG + chr3_4:35701125-35701144 Msa0498650:CDS 35.0%
TTCATTGCCAAAATCATGGA+TGG + chr3_4:35701129-35701148 Msa0498650:CDS 35.0%
!! GGATGCATGACTTGTTATTT+AGG + chr3_4:35701150-35701169 Msa0498650:exon 35.0%
TGATCGTTACTGTCTGAAAA+TGG + chr3_4:35701244-35701263 Msa0498650:intron 35.0%
GATCGTTACTGTCTGAAAAT+GGG + chr3_4:35701245-35701264 Msa0498650:intron 35.0%
! TTTCCGGAAGATTTCTAAGG+TGG + chr3_4:35699756-35699775 Msa0498650:CDS 40.0%
CATCCACCTTAGAAATCTTC+CGG - chr3_4:35699762-35699781 None:intergenic 40.0%
!! GAAGATTTCTAAGGTGGATG+TGG + chr3_4:35699762-35699781 Msa0498650:CDS 40.0%
CCGATGGAAAAGAGAAACAA+TGG + chr3_4:35699920-35699939 Msa0498650:intron 40.0%
AACAGTCATATATGGTCGGT+TGG + chr3_4:35700037-35700056 Msa0498650:intron 40.0%
ACAGTCATATATGGTCGGTT+GGG + chr3_4:35700038-35700057 Msa0498650:intron 40.0%
! ATATATGGTCGGTTGGGTTT+TGG + chr3_4:35700044-35700063 Msa0498650:intron 40.0%
! TATATGGTCGGTTGGGTTTT+GGG + chr3_4:35700045-35700064 Msa0498650:intron 40.0%
GTGTGTGAAACTCTGTCATT+AGG + chr3_4:35700211-35700230 Msa0498650:CDS 40.0%
CTGTCATTAGGTAGATTGGA+AGG + chr3_4:35700223-35700242 Msa0498650:CDS 40.0%
! GACAAAAGCACAAGGTGTTA+CGG + chr3_4:35700673-35700692 Msa0498650:CDS 40.0%
CACCAGAATTCACATCAACA+AGG + chr3_4:35700698-35700717 Msa0498650:CDS 40.0%
AGCCAAAGGAATGACAACAT+TGG + chr3_4:35700772-35700791 Msa0498650:CDS 40.0%
! CTTCAAATAAATGGTGGGGA+TGG + chr3_4:35700837-35700856 Msa0498650:CDS 40.0%
AAGAGTCAACCAGAAGAAAG+CGG + chr3_4:35700902-35700921 Msa0498650:CDS 40.0%
GAGAAGAAGGAATGTGAAAC+CGG + chr3_4:35700935-35700954 Msa0498650:CDS 40.0%
AGTAGTGAAGAAACTCGTCA+AGG + chr3_4:35700968-35700987 Msa0498650:CDS 40.0%
CATCTTTGTTGAGATCTGTG+AGG + chr3_4:35700993-35701012 Msa0498650:CDS 40.0%
AGGAAAAGAGCTGTAGAAGA+AGG + chr3_4:35701013-35701032 Msa0498650:CDS 40.0%
GTGTAAACAAGCTAGGCAAA+AGG + chr3_4:35701074-35701093 Msa0498650:CDS 40.0%
! CATGCATCCATCCATGATTT+TGG - chr3_4:35701139-35701158 None:intergenic 40.0%
CACGACTGTTTAACAAAGAG+CGG - chr3_4:35701226-35701245 None:intergenic 40.0%
ACTGTCTGAAAATGGGAATC+TGG + chr3_4:35701252-35701271 Msa0498650:intron 40.0%
TGTTGTACCATCATTCTGCA+TGG + chr3_4:35701276-35701295 Msa0498650:three_prime_UTR 40.0%
TAAGAAGCCATGCAGAATGA+TGG - chr3_4:35701286-35701305 None:intergenic 40.0%
! TTTCCGGAAGATTTCTAAGG+TGG + chr3_4:35699756-35699775 Msa0498650:CDS 40.0%
CATCCACCTTAGAAATCTTC+CGG - chr3_4:35699762-35699781 None:intergenic 40.0%
!! GAAGATTTCTAAGGTGGATG+TGG + chr3_4:35699762-35699781 Msa0498650:CDS 40.0%
CCGATGGAAAAGAGAAACAA+TGG + chr3_4:35699920-35699939 Msa0498650:intron 40.0%
AACAGTCATATATGGTCGGT+TGG + chr3_4:35700037-35700056 Msa0498650:intron 40.0%
ACAGTCATATATGGTCGGTT+GGG + chr3_4:35700038-35700057 Msa0498650:intron 40.0%
! ATATATGGTCGGTTGGGTTT+TGG + chr3_4:35700044-35700063 Msa0498650:intron 40.0%
! TATATGGTCGGTTGGGTTTT+GGG + chr3_4:35700045-35700064 Msa0498650:intron 40.0%
GTGTGTGAAACTCTGTCATT+AGG + chr3_4:35700211-35700230 Msa0498650:CDS 40.0%
CTGTCATTAGGTAGATTGGA+AGG + chr3_4:35700223-35700242 Msa0498650:CDS 40.0%
! GACAAAAGCACAAGGTGTTA+CGG + chr3_4:35700673-35700692 Msa0498650:CDS 40.0%
CACCAGAATTCACATCAACA+AGG + chr3_4:35700698-35700717 Msa0498650:CDS 40.0%
AGCCAAAGGAATGACAACAT+TGG + chr3_4:35700772-35700791 Msa0498650:CDS 40.0%
! CTTCAAATAAATGGTGGGGA+TGG + chr3_4:35700837-35700856 Msa0498650:CDS 40.0%
AAGAGTCAACCAGAAGAAAG+CGG + chr3_4:35700902-35700921 Msa0498650:CDS 40.0%
GAGAAGAAGGAATGTGAAAC+CGG + chr3_4:35700935-35700954 Msa0498650:CDS 40.0%
AGTAGTGAAGAAACTCGTCA+AGG + chr3_4:35700968-35700987 Msa0498650:CDS 40.0%
CATCTTTGTTGAGATCTGTG+AGG + chr3_4:35700993-35701012 Msa0498650:CDS 40.0%
AGGAAAAGAGCTGTAGAAGA+AGG + chr3_4:35701013-35701032 Msa0498650:CDS 40.0%
GTGTAAACAAGCTAGGCAAA+AGG + chr3_4:35701074-35701093 Msa0498650:CDS 40.0%
! CATGCATCCATCCATGATTT+TGG - chr3_4:35701139-35701158 None:intergenic 40.0%
CACGACTGTTTAACAAAGAG+CGG - chr3_4:35701226-35701245 None:intergenic 40.0%
ACTGTCTGAAAATGGGAATC+TGG + chr3_4:35701252-35701271 Msa0498650:intron 40.0%
TGTTGTACCATCATTCTGCA+TGG + chr3_4:35701276-35701295 Msa0498650:three_prime_UTR 40.0%
TAAGAAGCCATGCAGAATGA+TGG - chr3_4:35701286-35701305 None:intergenic 40.0%
GAAATTTGCAGTGTAGCCGA+TGG + chr3_4:35699715-35699734 Msa0498650:CDS 45.0%
! TCGACTGTGTTTGCTACCAT+CGG - chr3_4:35699734-35699753 None:intergenic 45.0%
! GCAAACACAGTCGAGTTTTC+CGG + chr3_4:35699740-35699759 Msa0498650:CDS 45.0%
!! GATTTCTAAGGTGGATGTGG+TGG + chr3_4:35699765-35699784 Msa0498650:CDS 45.0%
! AGGTGGATGTGGTGGTTTTT+AGG + chr3_4:35699773-35699792 Msa0498650:CDS 45.0%
AGAAACTGTAGCGCATGAGT+TGG + chr3_4:35699811-35699830 Msa0498650:intron 45.0%
CTAGCGATGATTCAACTACC+AGG - chr3_4:35699883-35699902 None:intergenic 45.0%
! TGCTAAGAGAAGTACACCGA+TGG + chr3_4:35699904-35699923 Msa0498650:intron 45.0%
AGAAGCTGTGCCATGAAAAC+TGG + chr3_4:35700099-35700118 Msa0498650:intron 45.0%
GTTTCACACACATACGCTGT+TGG - chr3_4:35700202-35700221 None:intergenic 45.0%
AAGGAGTTGCTTCTGATGAC+AGG + chr3_4:35700242-35700261 Msa0498650:CDS 45.0%
! TGCAACAAGCAAATGATGGG+AGG + chr3_4:35700651-35700670 Msa0498650:CDS 45.0%
CACCGTGTTCGGAAAATTCT+GGG - chr3_4:35700750-35700769 None:intergenic 45.0%
ACACCGTGTTCGGAAAATTC+TGG - chr3_4:35700751-35700770 None:intergenic 45.0%
GTAGTCGATAAGCTTTCGGA+CGG - chr3_4:35700818-35700837 None:intergenic 45.0%
! CGTACTGACACAAACCAAGA+CGG + chr3_4:35700875-35700894 Msa0498650:CDS 45.0%
GCTTGTTTACACCATAGCCT+CGG - chr3_4:35701066-35701085 None:intergenic 45.0%
GGCTATGGTGTAAACAAGCT+AGG + chr3_4:35701067-35701086 Msa0498650:CDS 45.0%
GACAGCTCATGTTACAAACC+AGG - chr3_4:35701204-35701223 None:intergenic 45.0%
GAAATTTGCAGTGTAGCCGA+TGG + chr3_4:35699715-35699734 Msa0498650:CDS 45.0%
! TCGACTGTGTTTGCTACCAT+CGG - chr3_4:35699734-35699753 None:intergenic 45.0%
! GCAAACACAGTCGAGTTTTC+CGG + chr3_4:35699740-35699759 Msa0498650:CDS 45.0%
!! GATTTCTAAGGTGGATGTGG+TGG + chr3_4:35699765-35699784 Msa0498650:CDS 45.0%
! AGGTGGATGTGGTGGTTTTT+AGG + chr3_4:35699773-35699792 Msa0498650:CDS 45.0%
AGAAACTGTAGCGCATGAGT+TGG + chr3_4:35699811-35699830 Msa0498650:intron 45.0%
CTAGCGATGATTCAACTACC+AGG - chr3_4:35699883-35699902 None:intergenic 45.0%
! TGCTAAGAGAAGTACACCGA+TGG + chr3_4:35699904-35699923 Msa0498650:intron 45.0%
AGAAGCTGTGCCATGAAAAC+TGG + chr3_4:35700099-35700118 Msa0498650:intron 45.0%
GTTTCACACACATACGCTGT+TGG - chr3_4:35700202-35700221 None:intergenic 45.0%
AAGGAGTTGCTTCTGATGAC+AGG + chr3_4:35700242-35700261 Msa0498650:CDS 45.0%
! TGCAACAAGCAAATGATGGG+AGG + chr3_4:35700651-35700670 Msa0498650:CDS 45.0%
CACCGTGTTCGGAAAATTCT+GGG - chr3_4:35700750-35700769 None:intergenic 45.0%
ACACCGTGTTCGGAAAATTC+TGG - chr3_4:35700751-35700770 None:intergenic 45.0%
GTAGTCGATAAGCTTTCGGA+CGG - chr3_4:35700818-35700837 None:intergenic 45.0%
! CGTACTGACACAAACCAAGA+CGG + chr3_4:35700875-35700894 Msa0498650:CDS 45.0%
GCTTGTTTACACCATAGCCT+CGG - chr3_4:35701066-35701085 None:intergenic 45.0%
GGCTATGGTGTAAACAAGCT+AGG + chr3_4:35701067-35701086 Msa0498650:CDS 45.0%
GACAGCTCATGTTACAAACC+AGG - chr3_4:35701204-35701223 None:intergenic 45.0%
! TCAGTCTTGTAGGAATGGCC+TGG + chr3_4:35699862-35699881 Msa0498650:intron 50.0%
GCTGTTGTGCACATCACGTT+AGG - chr3_4:35700015-35700034 None:intergenic 50.0%
TGGCACAGCTTCTCTAGCAT+GGG - chr3_4:35700092-35700111 None:intergenic 50.0%
ATGGCACAGCTTCTCTAGCA+TGG - chr3_4:35700093-35700112 None:intergenic 50.0%
! GCTTCTCAGGCCAGTTTTCA+TGG - chr3_4:35700112-35700131 None:intergenic 50.0%
! AAACTGGCCTGAGAAGCTGT+CGG + chr3_4:35700115-35700134 Msa0498650:intron 50.0%
GTTATGGTGACATTCGGCTG+CGG + chr3_4:35700417-35700436 Msa0498650:intron 50.0%
! GATGGGAGGACAAAAGCACA+AGG + chr3_4:35700665-35700684 Msa0498650:CDS 50.0%
! CGCCCAGAATTTTCCGAACA+CGG + chr3_4:35700745-35700764 Msa0498650:CDS 50.0%
CCTTTGGCTAACACCGTGTT+CGG - chr3_4:35700761-35700780 None:intergenic 50.0%
ACTGACACAAACCAAGACGG+AGG + chr3_4:35700878-35700897 Msa0498650:CDS 50.0%
AGTCAACCAGAAGAAAGCGG+AGG + chr3_4:35700905-35700924 Msa0498650:CDS 50.0%
TTAGGTGTTCTCCGAGGCTA+TGG + chr3_4:35701052-35701071 Msa0498650:CDS 50.0%
CTCAAGTAGTGTCTTTGGGC+TGG + chr3_4:35701389-35701408 Msa0498650:three_prime_UTR 50.0%
!! AGTGTCTTTGGGCTGGTGTT+TGG + chr3_4:35701396-35701415 Msa0498650:three_prime_UTR 50.0%
! GGGCTGGTGTTTGGAACTAA+TGG + chr3_4:35701405-35701424 Msa0498650:three_prime_UTR 50.0%
! TCAGTCTTGTAGGAATGGCC+TGG + chr3_4:35699862-35699881 Msa0498650:intron 50.0%
GCTGTTGTGCACATCACGTT+AGG - chr3_4:35700015-35700034 None:intergenic 50.0%
TGGCACAGCTTCTCTAGCAT+GGG - chr3_4:35700092-35700111 None:intergenic 50.0%
ATGGCACAGCTTCTCTAGCA+TGG - chr3_4:35700093-35700112 None:intergenic 50.0%
! GCTTCTCAGGCCAGTTTTCA+TGG - chr3_4:35700112-35700131 None:intergenic 50.0%
! AAACTGGCCTGAGAAGCTGT+CGG + chr3_4:35700115-35700134 Msa0498650:intron 50.0%
GTTATGGTGACATTCGGCTG+CGG + chr3_4:35700417-35700436 Msa0498650:intron 50.0%
! GATGGGAGGACAAAAGCACA+AGG + chr3_4:35700665-35700684 Msa0498650:CDS 50.0%
! CGCCCAGAATTTTCCGAACA+CGG + chr3_4:35700745-35700764 Msa0498650:CDS 50.0%
CCTTTGGCTAACACCGTGTT+CGG - chr3_4:35700761-35700780 None:intergenic 50.0%
ACTGACACAAACCAAGACGG+AGG + chr3_4:35700878-35700897 Msa0498650:CDS 50.0%
AGTCAACCAGAAGAAAGCGG+AGG + chr3_4:35700905-35700924 Msa0498650:CDS 50.0%
TTAGGTGTTCTCCGAGGCTA+TGG + chr3_4:35701052-35701071 Msa0498650:CDS 50.0%
CTCAAGTAGTGTCTTTGGGC+TGG + chr3_4:35701389-35701408 Msa0498650:three_prime_UTR 50.0%
!! AGTGTCTTTGGGCTGGTGTT+TGG + chr3_4:35701396-35701415 Msa0498650:three_prime_UTR 50.0%
! GGGCTGGTGTTTGGAACTAA+TGG + chr3_4:35701405-35701424 Msa0498650:three_prime_UTR 50.0%
!!! GTTGGGTTTTGGGAGTGGCT+GGG + chr3_4:35700055-35700074 Msa0498650:intron 55.0%
! CCGAACACGGTGTTAGCCAA+AGG + chr3_4:35700758-35700777 Msa0498650:CDS 55.0%
! GTTGACTCTTGCCTCCGTCT+TGG - chr3_4:35700892-35700911 None:intergenic 55.0%
ACCAGAAGAAAGCGGAGGAG+AGG + chr3_4:35700910-35700929 Msa0498650:CDS 55.0%
GGTGCAGTAATTGCGTCTCC+TGG + chr3_4:35701183-35701202 Msa0498650:three_prime_UTR 55.0%
!!! GTTGGGTTTTGGGAGTGGCT+GGG + chr3_4:35700055-35700074 Msa0498650:intron 55.0%
! CCGAACACGGTGTTAGCCAA+AGG + chr3_4:35700758-35700777 Msa0498650:CDS 55.0%
! GTTGACTCTTGCCTCCGTCT+TGG - chr3_4:35700892-35700911 None:intergenic 55.0%
ACCAGAAGAAAGCGGAGGAG+AGG + chr3_4:35700910-35700929 Msa0498650:CDS 55.0%
GGTGCAGTAATTGCGTCTCC+TGG + chr3_4:35701183-35701202 Msa0498650:three_prime_UTR 55.0%
!!! GGTCGGTTGGGTTTTGGGAG+TGG + chr3_4:35700050-35700069 Msa0498650:intron 60.0%
!!! GGTTGGGTTTTGGGAGTGGC+TGG + chr3_4:35700054-35700073 Msa0498650:intron 60.0%
TGCGCATCCGACAGCTTCTC+AGG - chr3_4:35700125-35700144 None:intergenic 60.0%
GCCTCTCCTCCGCTTTCTTC+TGG - chr3_4:35700914-35700933 None:intergenic 60.0%
CGGAGGAGAGGCAGAGAAGA+AGG + chr3_4:35700922-35700941 Msa0498650:CDS 60.0%
!!! GGTCGGTTGGGTTTTGGGAG+TGG + chr3_4:35700050-35700069 Msa0498650:intron 60.0%
!!! GGTTGGGTTTTGGGAGTGGC+TGG + chr3_4:35700054-35700073 Msa0498650:intron 60.0%
TGCGCATCCGACAGCTTCTC+AGG - chr3_4:35700125-35700144 None:intergenic 60.0%
GCCTCTCCTCCGCTTTCTTC+TGG - chr3_4:35700914-35700933 None:intergenic 60.0%
CGGAGGAGAGGCAGAGAAGA+AGG + chr3_4:35700922-35700941 Msa0498650:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 35699709 35701435 35699709 ID=Msa0498650;Name=Msa0498650
chr3_4 mRNA 35699709 35701435 35699709 ID=Msa0498650-mRNA-1;Parent=Msa0498650;Name=Msa0498650-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.33|0.5|0.5|0.66|0.5|4|236|229
chr3_4 exon 35699709 35699800 35699709 ID=Msa0498650-mRNA-1:exon:7523;Parent=Msa0498650-mRNA-1
chr3_4 exon 35700180 35700263 35700180 ID=Msa0498650-mRNA-1:exon:7524;Parent=Msa0498650-mRNA-1
chr3_4 exon 35700646 35701213 35700646 ID=Msa0498650-mRNA-1:exon:7525;Parent=Msa0498650-mRNA-1
chr3_4 exon 35701254 35701435 35701254 ID=Msa0498650-mRNA-1:exon:7526;Parent=Msa0498650-mRNA-1
chr3_4 CDS 35699709 35699800 35699709 ID=Msa0498650-mRNA-1:cds;Parent=Msa0498650-mRNA-1
chr3_4 CDS 35700180 35700263 35700180 ID=Msa0498650-mRNA-1:cds;Parent=Msa0498650-mRNA-1
chr3_4 CDS 35700646 35701159 35700646 ID=Msa0498650-mRNA-1:cds;Parent=Msa0498650-mRNA-1
chr3_4 three_prime_UTR 35701160 35701213 35701160 ID=Msa0498650-mRNA-1:three_prime_utr;Parent=Msa0498650-mRNA-1
chr3_4 three_prime_UTR 35701254 35701435 35701254 ID=Msa0498650-mRNA-1:three_prime_utr;Parent=Msa0498650-mRNA-1
Gene Sequence

>Msa0498650

ATGGTGGAAATTTGCAGTGTAGCCGATGGTAGCAAACACAGTCGAGTTTTCCGGAAGATTTCTAAGGTGGATGTGGTGGTTTTTAGGAATAGTGGAATTGATCGGCGTGAGCCAACAGCGTATGTGTGTGAAACTCTGTCATTAGGTAGATTGGAAGGAGTTGCTTCTGATGACAGTGTTTTGCAACAAGCAAATGATGGGAGGACAAAAGCACAAGGTGTTACGGTGCACCAGAATTCACATCAACAAGGAAATAAAAGCGTTGAAAGTGGACGCGCCCAGAATTTTCCGAACACGGTGTTAGCCAAAGGAATGACAACATTGGATGAATTTAAATATGGGTTTCCGTCCGAAAGCTTATCGACTACTTCAAATAAATGGTGGGGATGGAGTGATTCTGACGATCGTACTGACACAAACCAAGACGGAGGCAAGAGTCAACCAGAAGAAAGCGGAGGAGAGGCAGAGAAGAAGGAATGTGAAACCGGAAAAGTTGAAAGTAGTGAAGAAACTCGTCAAGGTTCATCTTTGTTGAGATCTGTGAGGAAAAGAGCTGTAGAAGAAGGAAGAGAAACATTTAAATTAGGTGTTCTCCGAGGCTATGGTGTAAACAAGCTAGGCAAAAGGGAGAAAATATTGCTCCATCAAATATTTGGATCTTCATTGCCAAAATCATGGATGGATGCATGA

Protein sequence

>Msa0498650

MVEICSVADGSKHSRVFRKISKVDVVVFRNSGIDRREPTAYVCETLSLGRLEGVASDDSVLQQANDGRTKAQGVTVHQNSHQQGNKSVESGRAQNFPNTVLAKGMTTLDEFKYGFPSESLSTTSNKWWGWSDSDDRTDTNQDGGKSQPEESGGEAEKKECETGKVESSEETRQGSSLLRSVRKRAVEEGRETFKLGVLRGYGVNKLGKREKILLHQIFGSSLPKSWMDA*