Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443010 | KEH18875.1 | 70.968 | 62 | 18 | 0 | 35 | 96 | 88 | 149 | 4.36e-23 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443010 | A0A072TZD4 | 70.968 | 62 | 18 | 0 | 35 | 96 | 88 | 149 | 2.08e-23 | 103 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037570 | Msa0443010 | -0.809748 | 1.623016e-50 | -8.615850e-47 |
| Msa0072120 | Msa0443010 | 0.813191 | 2.899481e-51 | -8.615850e-47 |
| Msa0092410 | Msa0443010 | 0.826181 | 3.123725e-54 | -8.615850e-47 |
| Msa0125650 | Msa0443010 | 0.820001 | 8.639326e-53 | -8.615850e-47 |
| Msa0140500 | Msa0443010 | -0.810192 | 1.302253e-50 | -8.615850e-47 |
| Msa0190530 | Msa0443010 | 0.807446 | 5.034752e-50 | -8.615850e-47 |
| Msa0217700 | Msa0443010 | 0.842630 | 2.299497e-58 | -8.615850e-47 |
| Msa0229590 | Msa0443010 | 0.815618 | 8.428735e-52 | -8.615850e-47 |
| Msa0371950 | Msa0443010 | 0.813451 | 2.543076e-51 | -8.615850e-47 |
| Msa0417330 | Msa0443010 | 0.808596 | 2.866101e-50 | -8.615850e-47 |
| Msa0443010 | Msa0443020 | 0.826970 | 2.024667e-54 | -8.615850e-47 |
| Msa0443010 | Msa0455760 | 0.800408 | 1.461528e-48 | -8.615850e-47 |
| Msa0443010 | Msa0506860 | 0.831234 | 1.873715e-55 | -8.615850e-47 |
| Msa0443010 | Msa0614920 | 0.809831 | 1.557491e-50 | -8.615850e-47 |
| Msa0443010 | Msa0624960 | 0.800111 | 1.679652e-48 | -8.615850e-47 |
| Msa0443010 | Msa0667740 | 0.806441 | 8.213303e-50 | -8.615850e-47 |
| Msa0443010 | Msa0708310 | 0.810858 | 9.352590e-51 | -8.615850e-47 |
| Msa0443010 | Msa0711150 | 0.812385 | 4.353682e-51 | -8.615850e-47 |
| Msa0443010 | Msa0733010 | 0.812596 | 3.916115e-51 | -8.615850e-47 |
| Msa0443010 | Msa0805960 | 0.800625 | 1.320121e-48 | -8.615850e-47 |
| Msa0443010 | Msa0830230 | 0.830686 | 2.553159e-55 | -8.615850e-47 |
| Msa0443010 | Msa0894710 | 0.814186 | 1.751351e-51 | -8.615850e-47 |
| Msa0443010 | Msa0902830 | 0.833280 | 5.840770e-56 | -8.615850e-47 |
| Msa0443010 | Msa0935770 | 0.807594 | 4.684130e-50 | -8.615850e-47 |
| Msa0443010 | Msa0943970 | 0.803538 | 3.324102e-49 | -8.615850e-47 |
| Msa0443010 | Msa0972810 | 0.818253 | 2.159207e-52 | -8.615850e-47 |
| Msa0443010 | Msa1025080 | 0.805688 | 1.182885e-49 | -8.615850e-47 |
| Msa0443010 | Msa1063400 | 0.817397 | 3.368879e-52 | -8.615850e-47 |
| Msa0443010 | Msa1109090 | 0.810376 | 1.188643e-50 | -8.615850e-47 |
| Msa0443010 | Msa1185110 | 0.809875 | 1.523998e-50 | -8.615850e-47 |
| Msa0443010 | Msa1246360 | 0.806852 | 6.725433e-50 | -8.615850e-47 |
| Msa0443010 | Msa1305530 | 0.813926 | 1.999124e-51 | -8.615850e-47 |
| Msa0443010 | Msa1345940 | 0.804212 | 2.408058e-49 | -8.615850e-47 |
| Msa0443010 | Msa1353890 | 0.805764 | 1.140606e-49 | -8.615850e-47 |
| Msa0443010 | Msa1372150 | 0.801552 | 8.530379e-49 | -8.615850e-47 |
| Msa0443010 | Msa1394380 | 0.817166 | 3.795968e-52 | -8.615850e-47 |
| Msa0443010 | Msa1418280 | 0.807492 | 4.923795e-50 | -8.615850e-47 |
| Msa0443010 | Msa1419690 | 0.805272 | 1.446078e-49 | -8.615850e-47 |
| Msa0443010 | Msa1430550 | 0.808698 | 2.725709e-50 | -8.615850e-47 |
| Msa0443010 | Msa1445390 | -0.808131 | 3.600569e-50 | -8.615850e-47 |
| Msa0443010 | Msa1448560 | 0.803580 | 3.257845e-49 | -8.615850e-47 |
| Msa0443010 | Msa1449340 | -0.811503 | 6.776544e-51 | -8.615850e-47 |
| Msa0443010 | Msa1450440 | 0.820254 | 7.557044e-53 | -8.615850e-47 |
| Msa0443010 | Msa1462360 | 0.814574 | 1.437553e-51 | -8.615850e-47 |
| Msa0241140 | Msa0443010 | 0.803977 | 2.694689e-49 | -8.615850e-47 |
| Msa0267790 | Msa0443010 | 0.809445 | 1.885269e-50 | -8.615850e-47 |
| Msa0269560 | Msa0443010 | 0.825128 | 5.550408e-54 | -8.615850e-47 |
| Msa0296480 | Msa0443010 | 0.800602 | 1.334357e-48 | -8.615850e-47 |
| Msa0348550 | Msa0443010 | 0.849211 | 3.741108e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443010 | MtrunA17_Chr8g0384791 | 67.213 | 61 | 20 | 0 | 36 | 96 | 1 | 61 | 1.04e-22 | 92.0 |
| Msa0443010 | MtrunA17_Chr3g0081361 | 81.395 | 43 | 8 | 0 | 96 | 138 | 758 | 800 | 1.02e-17 | 78.6 |
| Msa0443010 | MtrunA17_Chr3g0081211 | 76.190 | 42 | 9 | 1 | 97 | 138 | 753 | 793 | 5.65e-15 | 70.9 |
| Msa0443010 | MtrunA17_Chr3g0081391 | 78.571 | 42 | 8 | 1 | 97 | 138 | 754 | 794 | 1.84e-14 | 69.3 |
| Msa0443010 | MtrunA17_Chr3g0081841 | 76.190 | 42 | 9 | 1 | 97 | 138 | 418 | 458 | 2.41e-14 | 68.9 |
| Msa0443010 | MtrunA17_Chr3g0081371 | 68.182 | 44 | 13 | 1 | 96 | 138 | 757 | 800 | 5.91e-14 | 67.8 |
| Msa0443010 | MtrunA17_Chr3g0144591 | 38.750 | 80 | 40 | 1 | 38 | 108 | 205 | 284 | 2.94e-12 | 62.8 |
| Msa0443010 | MtrunA17_Chr3g0081191 | 70.000 | 40 | 11 | 1 | 99 | 138 | 752 | 790 | 4.34e-12 | 62.4 |
| Msa0443010 | MtrunA17_Chr3g0087691 | 44.068 | 59 | 33 | 0 | 38 | 96 | 166 | 224 | 7.09e-12 | 61.6 |
| Msa0443010 | MtrunA17_Chr3g0081181 | 61.905 | 42 | 15 | 1 | 96 | 137 | 737 | 777 | 6.90e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 24 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTAACAAATTTGCCTGAT+TGG | 0.272686 | 3_3:-13455588 | Msa0443010:CDS |
| TTAGCTTAACAAGATACTTT+AGG | 0.292237 | 3_3:+13455557 | None:intergenic |
| TTTAGGTTTGGAATCCAATC+AGG | 0.368386 | 3_3:+13455574 | None:intergenic |
| GTCTATCCTCATTCACTTGT+TGG | 0.373499 | 3_3:+13456010 | None:intergenic |
| ATCCCTCTCATTAGTGAGTC+TGG | 0.379639 | 3_3:-13456163 | Msa0443010:CDS |
| ATGCACTTCTTACCGAATAA+TGG | 0.386950 | 3_3:+13455962 | None:intergenic |
| TTAACAAGATACTTTAGGTT+TGG | 0.392707 | 3_3:+13455562 | None:intergenic |
| ATTAGTGAGTCTGGCAGCTC+TGG | 0.411338 | 3_3:-13456154 | Msa0443010:CDS |
| AAGTTGAGAATTCTTAGATT+AGG | 0.424323 | 3_3:+13455619 | None:intergenic |
| GTTGGAATGAAGAGCTTGTT+CGG | 0.441714 | 3_3:-13456083 | Msa0443010:CDS |
| AATGAGAGGGATATCAAAAC+CGG | 0.501758 | 3_3:+13456174 | None:intergenic |
| GTTTCGGTCTAACAGAATGA+AGG | 0.514043 | 3_3:+13456869 | None:intergenic |
| TTGAGAATTCTTAGATTAGG+TGG | 0.520276 | 3_3:+13455622 | None:intergenic |
| CTAAGAATTCTCAACTTGAA+AGG | 0.530169 | 3_3:-13455613 | Msa0443010:CDS |
| TCCACCACGATATTAAAAGT+TGG | 0.530244 | 3_3:-13456101 | Msa0443010:CDS |
| ACAAGTGAATGAGGATAGAC+TGG | 0.541413 | 3_3:-13456007 | Msa0443010:CDS |
| AGAATTCTTAGATTAGGTGG+TGG | 0.546776 | 3_3:+13455625 | None:intergenic |
| GCTTTACAAAGATATACAGT+TGG | 0.576664 | 3_3:-13456132 | Msa0443010:CDS |
| TGCCAGACTCACTAATGAGA+GGG | 0.600267 | 3_3:+13456161 | None:intergenic |
| GCTGTTCCAACAAGTGAATG+AGG | 0.605311 | 3_3:-13456016 | Msa0443010:CDS |
| CTGCCAGACTCACTAATGAG+AGG | 0.612862 | 3_3:+13456160 | None:intergenic |
| TTGAAGAAGGAACAGCGCAA+AGG | 0.618767 | 3_3:-13456053 | Msa0443010:CDS |
| TCATTCACTTGTTGGAACAG+CGG | 0.658940 | 3_3:+13456018 | None:intergenic |
| TGAATGAGGATAGACTGGTG+TGG | 0.754909 | 3_3:-13456002 | Msa0443010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCAACTTAAACTTTTTTT+AGG | + | chr3_3:13455604-13455623 | None:intergenic | 15.0% |
| !! | TAAGATTATTTATTTAGCAT+TGG | - | chr3_3:13455766-13455785 | Msa0443010:intron | 15.0% |
| !!! | CTTATGTTTTAAGAATAAAT+AGG | - | chr3_3:13456017-13456036 | Msa0443010:CDS | 15.0% |
| !!! | ATACCATATTTTTAATTTTC+GGG | + | chr3_3:13456958-13456977 | None:intergenic | 15.0% |
| !!! | CATACCATATTTTTAATTTT+CGG | + | chr3_3:13456959-13456978 | None:intergenic | 15.0% |
| !!! | AATCAACTTAAACTTTTTTT+AGG | + | chr3_3:13455604-13455623 | None:intergenic | 15.0% |
| !! | TAAGATTATTTATTTAGCAT+TGG | - | chr3_3:13455766-13455785 | Msa0443010:intron | 15.0% |
| !!! | CTTATGTTTTAAGAATAAAT+AGG | - | chr3_3:13456017-13456036 | Msa0443010:CDS | 15.0% |
| !!! | ATACCATATTTTTAATTTTC+GGG | + | chr3_3:13456958-13456977 | None:intergenic | 15.0% |
| !!! | CATACCATATTTTTAATTTT+CGG | + | chr3_3:13456959-13456978 | None:intergenic | 15.0% |
| !!! | TTTTAAGAATAAATAGGAGA+AGG | - | chr3_3:13456023-13456042 | Msa0443010:CDS | 20.0% |
| !! | TTTAAGAATAAATAGGAGAA+GGG | - | chr3_3:13456024-13456043 | Msa0443010:CDS | 20.0% |
| !! | TGTAATATTAATTAACCATG+TGG | - | chr3_3:13456577-13456596 | Msa0443010:intron | 20.0% |
| !!! | TACCATATTTTTAATTTTCG+GGG | + | chr3_3:13456957-13456976 | None:intergenic | 20.0% |
| !! | CGAAAATTAAAAATATGGTA+TGG | - | chr3_3:13456957-13456976 | Msa0443010:intron | 20.0% |
| !! | TAATATTCAAAGATTCAAGA+TGG | + | chr3_3:13457117-13457136 | None:intergenic | 20.0% |
| !!! | TTTTAAGAATAAATAGGAGA+AGG | - | chr3_3:13456023-13456042 | Msa0443010:CDS | 20.0% |
| !! | TTTAAGAATAAATAGGAGAA+GGG | - | chr3_3:13456024-13456043 | Msa0443010:CDS | 20.0% |
| !! | TGTAATATTAATTAACCATG+TGG | - | chr3_3:13456577-13456596 | Msa0443010:intron | 20.0% |
| !!! | TACCATATTTTTAATTTTCG+GGG | + | chr3_3:13456957-13456976 | None:intergenic | 20.0% |
| !! | CGAAAATTAAAAATATGGTA+TGG | - | chr3_3:13456957-13456976 | Msa0443010:intron | 20.0% |
| !! | TAATATTCAAAGATTCAAGA+TGG | + | chr3_3:13457117-13457136 | None:intergenic | 20.0% |
| ! | GATGATACAAATTACATAAC+AGG | + | chr3_3:13455833-13455852 | None:intergenic | 25.0% |
| ! | TTTATTTATGACAATTCTGG+CGG | + | chr3_3:13456240-13456259 | None:intergenic | 25.0% |
| !! | CACTTTATTTATGACAATTC+TGG | + | chr3_3:13456243-13456262 | None:intergenic | 25.0% |
| ! | ATATTAATTAACCATGTGGT+TGG | - | chr3_3:13456581-13456600 | Msa0443010:intron | 25.0% |
| ! | TATTAATTAACCATGTGGTT+GGG | - | chr3_3:13456582-13456601 | Msa0443010:intron | 25.0% |
| !!! | ACCATATTTTTAATTTTCGG+GGG | + | chr3_3:13456956-13456975 | None:intergenic | 25.0% |
| ! | AAGTTGAGAATTCTTAGATT+AGG | + | chr3_3:13457193-13457212 | None:intergenic | 25.0% |
| ! | AATTAACAAATTTGCCTGAT+TGG | - | chr3_3:13457221-13457240 | Msa0443010:intron | 25.0% |
| !! | TTAACAAGATACTTTAGGTT+TGG | + | chr3_3:13457250-13457269 | None:intergenic | 25.0% |
| ! | TTAGCTTAACAAGATACTTT+AGG | + | chr3_3:13457255-13457274 | None:intergenic | 25.0% |
| ! | GATGATACAAATTACATAAC+AGG | + | chr3_3:13455833-13455852 | None:intergenic | 25.0% |
| ! | TTTATTTATGACAATTCTGG+CGG | + | chr3_3:13456240-13456259 | None:intergenic | 25.0% |
| !! | CACTTTATTTATGACAATTC+TGG | + | chr3_3:13456243-13456262 | None:intergenic | 25.0% |
| ! | ATATTAATTAACCATGTGGT+TGG | - | chr3_3:13456581-13456600 | Msa0443010:intron | 25.0% |
| ! | TATTAATTAACCATGTGGTT+GGG | - | chr3_3:13456582-13456601 | Msa0443010:intron | 25.0% |
| !!! | ACCATATTTTTAATTTTCGG+GGG | + | chr3_3:13456956-13456975 | None:intergenic | 25.0% |
| ! | AAGTTGAGAATTCTTAGATT+AGG | + | chr3_3:13457193-13457212 | None:intergenic | 25.0% |
| ! | AATTAACAAATTTGCCTGAT+TGG | - | chr3_3:13457221-13457240 | Msa0443010:intron | 25.0% |
| !! | TTAACAAGATACTTTAGGTT+TGG | + | chr3_3:13457250-13457269 | None:intergenic | 25.0% |
| ! | TTAGCTTAACAAGATACTTT+AGG | + | chr3_3:13457255-13457274 | None:intergenic | 25.0% |
| ATAATAGAATAGACACCACA+AGG | + | chr3_3:13456320-13456339 | None:intergenic | 30.0% | |
| CTTGAAAATGATAGAACAAG+TGG | + | chr3_3:13456467-13456486 | None:intergenic | 30.0% | |
| ! | TTTTGCTAATGTGCATAAGA+GGG | + | chr3_3:13456518-13456537 | None:intergenic | 30.0% |
| GTGACTAATAAACTTTCGAT+AGG | - | chr3_3:13456610-13456629 | Msa0443010:intron | 30.0% | |
| AATAAACTTTCGATAGGTTC+CGG | - | chr3_3:13456616-13456635 | Msa0443010:intron | 30.0% | |
| GCTTTACAAAGATATACAGT+TGG | - | chr3_3:13456677-13456696 | Msa0443010:intron | 30.0% | |
| ! | CATTCCAACTTTTAATATCG+TGG | + | chr3_3:13456715-13456734 | None:intergenic | 30.0% |
| !! | GTTCGGTATATTTTTGAAGA+AGG | - | chr3_3:13456743-13456762 | Msa0443010:intron | 30.0% |
| TTTGTGTGTAGAAGAAATAG+TGG | - | chr3_3:13456874-13456893 | Msa0443010:intron | 30.0% | |
| TGGATAATTCTCACTTAAGA+AGG | - | chr3_3:13456894-13456913 | Msa0443010:CDS | 30.0% | |
| TCCCCCGAAAATTAAAAATA+TGG | - | chr3_3:13456952-13456971 | Msa0443010:intron | 30.0% | |
| TTGAGAATTCTTAGATTAGG+TGG | + | chr3_3:13457190-13457209 | None:intergenic | 30.0% | |
| CTAAGAATTCTCAACTTGAA+AGG | - | chr3_3:13457196-13457215 | Msa0443010:intron | 30.0% | |
| ATAATAGAATAGACACCACA+AGG | + | chr3_3:13456320-13456339 | None:intergenic | 30.0% | |
| CTTGAAAATGATAGAACAAG+TGG | + | chr3_3:13456467-13456486 | None:intergenic | 30.0% | |
| ! | TTTTGCTAATGTGCATAAGA+GGG | + | chr3_3:13456518-13456537 | None:intergenic | 30.0% |
| GTGACTAATAAACTTTCGAT+AGG | - | chr3_3:13456610-13456629 | Msa0443010:intron | 30.0% | |
| AATAAACTTTCGATAGGTTC+CGG | - | chr3_3:13456616-13456635 | Msa0443010:intron | 30.0% | |
| GCTTTACAAAGATATACAGT+TGG | - | chr3_3:13456677-13456696 | Msa0443010:intron | 30.0% | |
| ! | CATTCCAACTTTTAATATCG+TGG | + | chr3_3:13456715-13456734 | None:intergenic | 30.0% |
| !! | GTTCGGTATATTTTTGAAGA+AGG | - | chr3_3:13456743-13456762 | Msa0443010:intron | 30.0% |
| TTTGTGTGTAGAAGAAATAG+TGG | - | chr3_3:13456874-13456893 | Msa0443010:intron | 30.0% | |
| TGGATAATTCTCACTTAAGA+AGG | - | chr3_3:13456894-13456913 | Msa0443010:CDS | 30.0% | |
| TCCCCCGAAAATTAAAAATA+TGG | - | chr3_3:13456952-13456971 | Msa0443010:intron | 30.0% | |
| TTGAGAATTCTTAGATTAGG+TGG | + | chr3_3:13457190-13457209 | None:intergenic | 30.0% | |
| CTAAGAATTCTCAACTTGAA+AGG | - | chr3_3:13457196-13457215 | Msa0443010:intron | 30.0% | |
| ACAGGAAACTGTCAAAATTG+AGG | + | chr3_3:13455855-13455874 | None:intergenic | 35.0% | |
| CTGTACATGTTGACAAATAC+AGG | + | chr3_3:13455873-13455892 | None:intergenic | 35.0% | |
| TTGTCAACATGTACAGATTC+AGG | - | chr3_3:13455877-13455896 | Msa0443010:intron | 35.0% | |
| ! | AGACATATAGAGGGTATAGA+GGG | - | chr3_3:13456049-13456068 | Msa0443010:CDS | 35.0% |
| TCGTATTGTGCAAATTACCA+CGG | - | chr3_3:13456264-13456283 | Msa0443010:intron | 35.0% | |
| TACTTGTACATAACACCTTG+TGG | - | chr3_3:13456302-13456321 | Msa0443010:intron | 35.0% | |
| ! | GACAAGTATCTGGTTTAAAG+AGG | + | chr3_3:13456413-13456432 | None:intergenic | 35.0% |
| ! | CTTTTGCTAATGTGCATAAG+AGG | + | chr3_3:13456519-13456538 | None:intergenic | 35.0% |
| AATGAGAGGGATATCAAAAC+CGG | + | chr3_3:13456638-13456657 | None:intergenic | 35.0% | |
| TCCACCACGATATTAAAAGT+TGG | - | chr3_3:13456708-13456727 | Msa0443010:intron | 35.0% | |
| ! | TCCAACTTTTAATATCGTGG+TGG | + | chr3_3:13456712-13456731 | None:intergenic | 35.0% |
| !!! | GAATAATGGCCATTTTTCTC+GGG | + | chr3_3:13456836-13456855 | None:intergenic | 35.0% |
| !!! | CGAATAATGGCCATTTTTCT+CGG | + | chr3_3:13456837-13456856 | None:intergenic | 35.0% |
| CGAGAAAAATGGCCATTATT+CGG | - | chr3_3:13456835-13456854 | Msa0443010:intron | 35.0% | |
| ATGCACTTCTTACCGAATAA+TGG | + | chr3_3:13456850-13456869 | None:intergenic | 35.0% | |
| AATTCTCACTTAAGAAGGCT+AGG | - | chr3_3:13456899-13456918 | Msa0443010:CDS | 35.0% | |
| ACTTAAGAAGGCTAGGTTAT+TGG | - | chr3_3:13456906-13456925 | Msa0443010:CDS | 35.0% | |
| TAGGTTATTGGAGTGGAATT+TGG | - | chr3_3:13456918-13456937 | Msa0443010:CDS | 35.0% | |
| ATGCATTTCCATATTCGTGA+TGG | + | chr3_3:13457069-13457088 | None:intergenic | 35.0% | |
| GAATATTATTGCCTTAGCTG+AGG | - | chr3_3:13457129-13457148 | Msa0443010:intron | 35.0% | |
| AAGAATTTCATCCTCAGCTA+AGG | + | chr3_3:13457143-13457162 | None:intergenic | 35.0% | |
| AGAATTCTTAGATTAGGTGG+TGG | + | chr3_3:13457187-13457206 | None:intergenic | 35.0% | |
| ! | TTTAGGTTTGGAATCCAATC+AGG | + | chr3_3:13457238-13457257 | None:intergenic | 35.0% |
| ACAGGAAACTGTCAAAATTG+AGG | + | chr3_3:13455855-13455874 | None:intergenic | 35.0% | |
| CTGTACATGTTGACAAATAC+AGG | + | chr3_3:13455873-13455892 | None:intergenic | 35.0% | |
| TTGTCAACATGTACAGATTC+AGG | - | chr3_3:13455877-13455896 | Msa0443010:intron | 35.0% | |
| ! | AGACATATAGAGGGTATAGA+GGG | - | chr3_3:13456049-13456068 | Msa0443010:CDS | 35.0% |
| TCGTATTGTGCAAATTACCA+CGG | - | chr3_3:13456264-13456283 | Msa0443010:intron | 35.0% | |
| TACTTGTACATAACACCTTG+TGG | - | chr3_3:13456302-13456321 | Msa0443010:intron | 35.0% | |
| ! | GACAAGTATCTGGTTTAAAG+AGG | + | chr3_3:13456413-13456432 | None:intergenic | 35.0% |
| ! | CTTTTGCTAATGTGCATAAG+AGG | + | chr3_3:13456519-13456538 | None:intergenic | 35.0% |
| AATGAGAGGGATATCAAAAC+CGG | + | chr3_3:13456638-13456657 | None:intergenic | 35.0% | |
| TCCACCACGATATTAAAAGT+TGG | - | chr3_3:13456708-13456727 | Msa0443010:intron | 35.0% | |
| ! | TCCAACTTTTAATATCGTGG+TGG | + | chr3_3:13456712-13456731 | None:intergenic | 35.0% |
| !!! | GAATAATGGCCATTTTTCTC+GGG | + | chr3_3:13456836-13456855 | None:intergenic | 35.0% |
| !!! | CGAATAATGGCCATTTTTCT+CGG | + | chr3_3:13456837-13456856 | None:intergenic | 35.0% |
| CGAGAAAAATGGCCATTATT+CGG | - | chr3_3:13456835-13456854 | Msa0443010:intron | 35.0% | |
| ATGCACTTCTTACCGAATAA+TGG | + | chr3_3:13456850-13456869 | None:intergenic | 35.0% | |
| AATTCTCACTTAAGAAGGCT+AGG | - | chr3_3:13456899-13456918 | Msa0443010:CDS | 35.0% | |
| ACTTAAGAAGGCTAGGTTAT+TGG | - | chr3_3:13456906-13456925 | Msa0443010:CDS | 35.0% | |
| TAGGTTATTGGAGTGGAATT+TGG | - | chr3_3:13456918-13456937 | Msa0443010:CDS | 35.0% | |
| ATGCATTTCCATATTCGTGA+TGG | + | chr3_3:13457069-13457088 | None:intergenic | 35.0% | |
| GAATATTATTGCCTTAGCTG+AGG | - | chr3_3:13457129-13457148 | Msa0443010:intron | 35.0% | |
| AAGAATTTCATCCTCAGCTA+AGG | + | chr3_3:13457143-13457162 | None:intergenic | 35.0% | |
| AGAATTCTTAGATTAGGTGG+TGG | + | chr3_3:13457187-13457206 | None:intergenic | 35.0% | |
| ! | TTTAGGTTTGGAATCCAATC+AGG | + | chr3_3:13457238-13457257 | None:intergenic | 35.0% |
| GTTTCGGTCTAACAGAATGA+AGG | + | chr3_3:13455943-13455962 | None:intergenic | 40.0% | |
| TGTTAGACCGAAACTGAATG+TGG | - | chr3_3:13455949-13455968 | Msa0443010:intron | 40.0% | |
| GAAACTGCCACATTCAGTTT+CGG | + | chr3_3:13455959-13455978 | None:intergenic | 40.0% | |
| AGAAGGGTCAGACATATAGA+GGG | - | chr3_3:13456040-13456059 | Msa0443010:CDS | 40.0% | |
| ! | CAGACATATAGAGGGTATAG+AGG | - | chr3_3:13456048-13456067 | Msa0443010:CDS | 40.0% |
| GTTATCCGGAAGTTATTGAG+TGG | - | chr3_3:13456071-13456090 | Msa0443010:CDS | 40.0% | |
| ACCAACCACTCAATAACTTC+CGG | + | chr3_3:13456079-13456098 | None:intergenic | 40.0% | |
| GAAGTTATTGAGTGGTTGGT+TGG | - | chr3_3:13456079-13456098 | Msa0443010:CDS | 40.0% | |
| GATCCAACTCTCGAACATTT+CGG | - | chr3_3:13456105-13456124 | Msa0443010:CDS | 40.0% | |
| AACTCTCGAACATTTCGGAA+GGG | - | chr3_3:13456110-13456129 | Msa0443010:CDS | 40.0% | |
| TGTACTGTGTGTATGCAATC+TGG | - | chr3_3:13456202-13456221 | Msa0443010:intron | 40.0% | |
| !! | TACAGATCAGTTCTAAACCG+TGG | + | chr3_3:13456284-13456303 | None:intergenic | 40.0% |
| AAGTGGAAATGTGACTTCCA+GGG | + | chr3_3:13456450-13456469 | None:intergenic | 40.0% | |
| ! | GTTGGAATGAAGAGCTTGTT+CGG | - | chr3_3:13456726-13456745 | Msa0443010:intron | 40.0% |
| ! | TCATTCACTTGTTGGAACAG+CGG | + | chr3_3:13456794-13456813 | None:intergenic | 40.0% |
| GTCTATCCTCATTCACTTGT+TGG | + | chr3_3:13456802-13456821 | None:intergenic | 40.0% | |
| ACAAGTGAATGAGGATAGAC+TGG | - | chr3_3:13456802-13456821 | Msa0443010:intron | 40.0% | |
| GTTATTGGAGTGGAATTTGG+AGG | - | chr3_3:13456921-13456940 | Msa0443010:intron | 40.0% | |
| AATGCTTGCCTACTAGAGTA+AGG | - | chr3_3:13456993-13457012 | Msa0443010:intron | 40.0% | |
| CGATTCAACCTTACTCTAGT+AGG | + | chr3_3:13457004-13457023 | None:intergenic | 40.0% | |
| AGAGTAAGGTTGAATCGAAG+AGG | - | chr3_3:13457007-13457026 | Msa0443010:intron | 40.0% | |
| GTTTCGGTCTAACAGAATGA+AGG | + | chr3_3:13455943-13455962 | None:intergenic | 40.0% | |
| TGTTAGACCGAAACTGAATG+TGG | - | chr3_3:13455949-13455968 | Msa0443010:intron | 40.0% | |
| GAAACTGCCACATTCAGTTT+CGG | + | chr3_3:13455959-13455978 | None:intergenic | 40.0% | |
| AGAAGGGTCAGACATATAGA+GGG | - | chr3_3:13456040-13456059 | Msa0443010:CDS | 40.0% | |
| ! | CAGACATATAGAGGGTATAG+AGG | - | chr3_3:13456048-13456067 | Msa0443010:CDS | 40.0% |
| GTTATCCGGAAGTTATTGAG+TGG | - | chr3_3:13456071-13456090 | Msa0443010:CDS | 40.0% | |
| ACCAACCACTCAATAACTTC+CGG | + | chr3_3:13456079-13456098 | None:intergenic | 40.0% | |
| GAAGTTATTGAGTGGTTGGT+TGG | - | chr3_3:13456079-13456098 | Msa0443010:CDS | 40.0% | |
| GATCCAACTCTCGAACATTT+CGG | - | chr3_3:13456105-13456124 | Msa0443010:CDS | 40.0% | |
| AACTCTCGAACATTTCGGAA+GGG | - | chr3_3:13456110-13456129 | Msa0443010:CDS | 40.0% | |
| TGTACTGTGTGTATGCAATC+TGG | - | chr3_3:13456202-13456221 | Msa0443010:intron | 40.0% | |
| !! | TACAGATCAGTTCTAAACCG+TGG | + | chr3_3:13456284-13456303 | None:intergenic | 40.0% |
| AAGTGGAAATGTGACTTCCA+GGG | + | chr3_3:13456450-13456469 | None:intergenic | 40.0% | |
| ! | GTTGGAATGAAGAGCTTGTT+CGG | - | chr3_3:13456726-13456745 | Msa0443010:intron | 40.0% |
| ! | TCATTCACTTGTTGGAACAG+CGG | + | chr3_3:13456794-13456813 | None:intergenic | 40.0% |
| GTCTATCCTCATTCACTTGT+TGG | + | chr3_3:13456802-13456821 | None:intergenic | 40.0% | |
| ACAAGTGAATGAGGATAGAC+TGG | - | chr3_3:13456802-13456821 | Msa0443010:intron | 40.0% | |
| GTTATTGGAGTGGAATTTGG+AGG | - | chr3_3:13456921-13456940 | Msa0443010:intron | 40.0% | |
| AATGCTTGCCTACTAGAGTA+AGG | - | chr3_3:13456993-13457012 | Msa0443010:intron | 40.0% | |
| CGATTCAACCTTACTCTAGT+AGG | + | chr3_3:13457004-13457023 | None:intergenic | 40.0% | |
| AGAGTAAGGTTGAATCGAAG+AGG | - | chr3_3:13457007-13457026 | Msa0443010:intron | 40.0% | |
| GAGAAGGGTCAGACATATAG+AGG | - | chr3_3:13456039-13456058 | Msa0443010:CDS | 45.0% | |
| ! | AGAGGGTATAGAGGGTTATC+CGG | - | chr3_3:13456057-13456076 | Msa0443010:CDS | 45.0% |
| TCCGGAAGTTATTGAGTGGT+TGG | - | chr3_3:13456075-13456094 | Msa0443010:CDS | 45.0% | |
| CTTCCGAAATGTTCGAGAGT+TGG | + | chr3_3:13456111-13456130 | None:intergenic | 45.0% | |
| CAACTCTCGAACATTTCGGA+AGG | - | chr3_3:13456109-13456128 | Msa0443010:CDS | 45.0% | |
| ACTCTCGAACATTTCGGAAG+GGG | - | chr3_3:13456111-13456130 | Msa0443010:CDS | 45.0% | |
| CACACAAAGATTCGAGAGCT+TGG | + | chr3_3:13456142-13456161 | None:intergenic | 45.0% | |
| ACCAGATACTTGTCTCTGTG+TGG | - | chr3_3:13456419-13456438 | Msa0443010:intron | 45.0% | |
| ACCACACAGAGACAAGTATC+TGG | + | chr3_3:13456423-13456442 | None:intergenic | 45.0% | |
| CAAGTGGAAATGTGACTTCC+AGG | + | chr3_3:13456451-13456470 | None:intergenic | 45.0% | |
| GCTAATGTGCATAAGAGGGA+GGG | + | chr3_3:13456514-13456533 | None:intergenic | 45.0% | |
| TGCTAATGTGCATAAGAGGG+AGG | + | chr3_3:13456515-13456534 | None:intergenic | 45.0% | |
| ATCCCTCTCATTAGTGAGTC+TGG | - | chr3_3:13456646-13456665 | Msa0443010:intron | 45.0% | |
| TGCCAGACTCACTAATGAGA+GGG | + | chr3_3:13456651-13456670 | None:intergenic | 45.0% | |
| TTGAAGAAGGAACAGCGCAA+AGG | - | chr3_3:13456756-13456775 | Msa0443010:intron | 45.0% | |
| GCTGTTCCAACAAGTGAATG+AGG | - | chr3_3:13456793-13456812 | Msa0443010:intron | 45.0% | |
| TGAATGAGGATAGACTGGTG+TGG | - | chr3_3:13456807-13456826 | Msa0443010:intron | 45.0% | |
| GTGTGGAATCCCGAGAAAAA+TGG | - | chr3_3:13456824-13456843 | Msa0443010:intron | 45.0% | |
| AGAAGGCTAGGTTATTGGAG+TGG | - | chr3_3:13456911-13456930 | Msa0443010:CDS | 45.0% | |
| ATATGGTATGGCATGTGTGC+AGG | - | chr3_3:13456969-13456988 | Msa0443010:intron | 45.0% | |
| TATGGTATGGCATGTGTGCA+GGG | - | chr3_3:13456970-13456989 | Msa0443010:intron | 45.0% | |
| TTGCACATAACACACGACGA+CGG | + | chr3_3:13457043-13457062 | None:intergenic | 45.0% | |
| TGCAACGACCATCACGAATA+TGG | - | chr3_3:13457058-13457077 | Msa0443010:intron | 45.0% | |
| GAGAAGGGTCAGACATATAG+AGG | - | chr3_3:13456039-13456058 | Msa0443010:CDS | 45.0% | |
| ! | AGAGGGTATAGAGGGTTATC+CGG | - | chr3_3:13456057-13456076 | Msa0443010:CDS | 45.0% |
| TCCGGAAGTTATTGAGTGGT+TGG | - | chr3_3:13456075-13456094 | Msa0443010:CDS | 45.0% | |
| CTTCCGAAATGTTCGAGAGT+TGG | + | chr3_3:13456111-13456130 | None:intergenic | 45.0% | |
| CAACTCTCGAACATTTCGGA+AGG | - | chr3_3:13456109-13456128 | Msa0443010:CDS | 45.0% | |
| ACTCTCGAACATTTCGGAAG+GGG | - | chr3_3:13456111-13456130 | Msa0443010:CDS | 45.0% | |
| CACACAAAGATTCGAGAGCT+TGG | + | chr3_3:13456142-13456161 | None:intergenic | 45.0% | |
| ACCAGATACTTGTCTCTGTG+TGG | - | chr3_3:13456419-13456438 | Msa0443010:intron | 45.0% | |
| ACCACACAGAGACAAGTATC+TGG | + | chr3_3:13456423-13456442 | None:intergenic | 45.0% | |
| CAAGTGGAAATGTGACTTCC+AGG | + | chr3_3:13456451-13456470 | None:intergenic | 45.0% | |
| GCTAATGTGCATAAGAGGGA+GGG | + | chr3_3:13456514-13456533 | None:intergenic | 45.0% | |
| TGCTAATGTGCATAAGAGGG+AGG | + | chr3_3:13456515-13456534 | None:intergenic | 45.0% | |
| ATCCCTCTCATTAGTGAGTC+TGG | - | chr3_3:13456646-13456665 | Msa0443010:intron | 45.0% | |
| TGCCAGACTCACTAATGAGA+GGG | + | chr3_3:13456651-13456670 | None:intergenic | 45.0% | |
| TTGAAGAAGGAACAGCGCAA+AGG | - | chr3_3:13456756-13456775 | Msa0443010:intron | 45.0% | |
| GCTGTTCCAACAAGTGAATG+AGG | - | chr3_3:13456793-13456812 | Msa0443010:intron | 45.0% | |
| TGAATGAGGATAGACTGGTG+TGG | - | chr3_3:13456807-13456826 | Msa0443010:intron | 45.0% | |
| GTGTGGAATCCCGAGAAAAA+TGG | - | chr3_3:13456824-13456843 | Msa0443010:intron | 45.0% | |
| AGAAGGCTAGGTTATTGGAG+TGG | - | chr3_3:13456911-13456930 | Msa0443010:CDS | 45.0% | |
| ATATGGTATGGCATGTGTGC+AGG | - | chr3_3:13456969-13456988 | Msa0443010:intron | 45.0% | |
| TATGGTATGGCATGTGTGCA+GGG | - | chr3_3:13456970-13456989 | Msa0443010:intron | 45.0% | |
| TTGCACATAACACACGACGA+CGG | + | chr3_3:13457043-13457062 | None:intergenic | 45.0% | |
| TGCAACGACCATCACGAATA+TGG | - | chr3_3:13457058-13457077 | Msa0443010:intron | 45.0% | |
| !! | GTCTCTGTGTGGTTTTACCC+TGG | - | chr3_3:13456430-13456449 | Msa0443010:intron | 50.0% |
| ! | GTCACTTTAGCCCAACCACA+TGG | + | chr3_3:13456595-13456614 | None:intergenic | 50.0% |
| CTGCCAGACTCACTAATGAG+AGG | + | chr3_3:13456652-13456671 | None:intergenic | 50.0% | |
| ATTAGTGAGTCTGGCAGCTC+TGG | - | chr3_3:13456655-13456674 | Msa0443010:intron | 50.0% | |
| !! | GTCTCTGTGTGGTTTTACCC+TGG | - | chr3_3:13456430-13456449 | Msa0443010:intron | 50.0% |
| ! | GTCACTTTAGCCCAACCACA+TGG | + | chr3_3:13456595-13456614 | None:intergenic | 50.0% |
| CTGCCAGACTCACTAATGAG+AGG | + | chr3_3:13456652-13456671 | None:intergenic | 50.0% | |
| ATTAGTGAGTCTGGCAGCTC+TGG | - | chr3_3:13456655-13456674 | Msa0443010:intron | 50.0% | |
| CGAACATTTCGGAAGGGGAG+AGG | - | chr3_3:13456116-13456135 | Msa0443010:CDS | 55.0% | |
| CGAACATTTCGGAAGGGGAG+AGG | - | chr3_3:13456116-13456135 | Msa0443010:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 13455540 | 13457291 | 13455540 | ID=Msa0443010;Name=Msa0443010 |
| chr3_3 | mRNA | 13455540 | 13457291 | 13455540 | ID=Msa0443010-mRNA-1;Parent=Msa0443010;Name=Msa0443010-mRNA-1;_AED=0.75;_eAED=0.76;_QI=0|0|0|0.75|0|0|4|0|142 |
| chr3_3 | exon | 13457286 | 13457291 | 13457286 | ID=Msa0443010-mRNA-1:exon:2960;Parent=Msa0443010-mRNA-1 |
| chr3_3 | exon | 13456882 | 13456938 | 13456882 | ID=Msa0443010-mRNA-1:exon:2959;Parent=Msa0443010-mRNA-1 |
| chr3_3 | exon | 13455975 | 13456199 | 13455975 | ID=Msa0443010-mRNA-1:exon:2958;Parent=Msa0443010-mRNA-1 |
| chr3_3 | exon | 13455540 | 13455680 | 13455540 | ID=Msa0443010-mRNA-1:exon:2957;Parent=Msa0443010-mRNA-1 |
| chr3_3 | CDS | 13457286 | 13457291 | 13457286 | ID=Msa0443010-mRNA-1:cds;Parent=Msa0443010-mRNA-1 |
| chr3_3 | CDS | 13456882 | 13456938 | 13456882 | ID=Msa0443010-mRNA-1:cds;Parent=Msa0443010-mRNA-1 |
| chr3_3 | CDS | 13455975 | 13456199 | 13455975 | ID=Msa0443010-mRNA-1:cds;Parent=Msa0443010-mRNA-1 |
| chr3_3 | CDS | 13455540 | 13455680 | 13455540 | ID=Msa0443010-mRNA-1:cds;Parent=Msa0443010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
