AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0667740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0667740 MtrunA17_Chr4g0006261 93.190 279 16 1 1 276 1 279 3.92e-157 438
Msa0667740 MtrunA17_Chr7g0242591 74.319 257 64 2 22 276 35 291 8.99e-110 319
Msa0667740 MtrunA17_Chr5g0409071 48.828 256 110 6 37 273 44 297 1.59e-56 183
Msa0667740 MtrunA17_Chr7g0265831 27.143 280 154 11 26 273 103 364 3.22e-11 63.2
Msa0667740 MtrunA17_Chr1g0179191 25.100 251 159 6 39 273 132 369 8.49e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0667740 AT2G38250.1 55.731 253 105 2 30 275 33 285 1.70e-70 219
Msa0667740 AT5G01380.1 52.256 266 103 4 34 275 47 312 8.99e-67 211
Msa0667740 AT3G25990.1 31.858 113 74 1 39 148 55 167 5.90e-14 71.6
Msa0667740 AT1G13450.3 30.631 111 77 0 39 149 87 197 2.26e-12 66.2
Msa0667740 AT1G13450.2 30.631 111 77 0 39 149 87 197 2.26e-12 66.2
Msa0667740 AT1G13450.1 30.631 111 77 0 39 149 87 197 3.25e-12 66.6
Msa0667740 AT1G13450.4 30.631 111 77 0 39 149 87 197 3.56e-12 65.1

Find 55 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGGAATTTGAAGGAAATTT+TGG 0.113135 4_4:-8327774 Msa0667740:CDS
GTTTGAAGTTCATTGTAAAA+TGG 0.240816 4_4:+8327995 None:intergenic
CCAAAATTTCCTTCAAATTC+CGG 0.246461 4_4:+8327774 None:intergenic
TACACTGTTCTGCACTTCTA+TGG 0.273481 4_4:+8329277 None:intergenic
GTTGTTGTTGATGTTGTCTT+TGG 0.290505 4_4:+8329487 None:intergenic
AAACTTTCATGGAGACTAAA+AGG 0.293357 4_4:-8329350 Msa0667740:CDS
AAACCTTGTTACTCGATATA+AGG 0.327763 4_4:-8329241 Msa0667740:intron
TGAAAGGAGGTTGAGGGAGA+TGG 0.392114 4_4:-8327684 Msa0667740:CDS
AGAGAATGAGAGGTTATTGA+TGG 0.399948 4_4:-8327636 Msa0667740:CDS
ACGTTGTTGATGTTTCTGAT+AGG 0.411226 4_4:-8329434 Msa0667740:CDS
TTCCAACCATATGAAGGAAA+AGG 0.414450 4_4:-8329304 Msa0667740:CDS
GGAGCTTGATCAAACTTTCA+TGG 0.426540 4_4:-8329361 Msa0667740:CDS
GAGAGAATGAAAGGAGGTTG+AGG 0.427005 4_4:-8327691 Msa0667740:CDS
TGGAACAAAGATGGAGAGAA+AGG 0.438127 4_4:-8327616 Msa0667740:CDS
AGAGAATGAAAGGAGGTTGA+GGG 0.438616 4_4:-8327690 Msa0667740:CDS
TCCAACCATATGAAGGAAAA+GGG 0.443984 4_4:-8329303 Msa0667740:CDS
AAGTGAAGCAGTGTCTCAAA+AGG 0.452908 4_4:-8327861 Msa0667740:CDS
CAAGGATGCAAAGAATGTTA+TGG 0.456689 4_4:-8327961 Msa0667740:CDS
CAACTTCAATTTCAATGGAA+GGG 0.461136 4_4:-8329530 None:intergenic
GGAGTATAAGAGAAGAAGCT+AGG 0.465680 4_4:-8327583 Msa0667740:CDS
TCAACTTCAATTTCAATGGA+AGG 0.468318 4_4:-8329531 None:intergenic
GTAGTAGCAAAAGTTTCTTC+CGG 0.476942 4_4:-8327793 Msa0667740:CDS
GGAGGTTGAGGGAGATGGAG+TGG 0.477709 4_4:-8327679 Msa0667740:CDS
AGTTATTTCCAACCATATGA+AGG 0.482469 4_4:-8329310 Msa0667740:CDS
AAGTTTCTTCCGGAATTTGA+AGG 0.486534 4_4:-8327783 Msa0667740:CDS
CTTCATCGTCATCGGTTGAA+AGG 0.490067 4_4:+8327900 None:intergenic
AAGAAGCTAGGGCTGAGAAG+AGG 0.496506 4_4:-8327571 Msa0667740:CDS
GGTTATTGATGGAACAAAGA+TGG 0.509077 4_4:-8327625 Msa0667740:CDS
AGAAGCTAGGGCTGAGAAGA+GGG 0.509525 4_4:-8327570 Msa0667740:CDS
TAAAAGGAACAAACAATTGT+GGG 0.514530 4_4:-8329334 Msa0667740:CDS
GGAACAAAGATGGAGAGAAA+GGG 0.522554 4_4:-8327615 Msa0667740:CDS
GCAAATTGAAGCACAATGGA+TGG 0.527054 4_4:-8327729 Msa0667740:CDS
GAGTATAAGAGAAGAAGCTA+GGG 0.529590 4_4:-8327582 Msa0667740:CDS
GATGGAGTGGAGACAACAAA+TGG 0.535582 4_4:-8327666 Msa0667740:CDS
CAGAACAGTGTAAGTGCAAG+TGG 0.539152 4_4:-8329266 Msa0667740:CDS
TTATGGACTAAAGCTGAAGA+AGG 0.553274 4_4:-8327944 Msa0667740:CDS
GGAGAGAAAGGGAAGAACAA+AGG 0.557998 4_4:-8327604 Msa0667740:CDS
TGGAAGTGTTAGAGAATGAG+AGG 0.559302 4_4:-8327646 Msa0667740:CDS
TTGAAGCAAGAGAGAATGAA+AGG 0.568271 4_4:-8327700 Msa0667740:CDS
AGTGAAGCAGTGTCTCAAAA+GGG 0.570275 4_4:-8327860 Msa0667740:CDS
ACCATCGTCTTCATCGTCAT+CGG 0.570363 4_4:+8327892 None:intergenic
AAGCAAGAGAGAATGAAAGG+AGG 0.580861 4_4:-8327697 Msa0667740:CDS
TGAAGAAGGATCGAAGAAGA+AGG 0.591569 4_4:-8327930 Msa0667740:CDS
GCAAAGGTAGACAGCGAAAG+CGG 0.602051 4_4:-8327815 Msa0667740:CDS
TAACATTCTTTGCATCCTTG+CGG 0.602220 4_4:+8327964 None:intergenic
AATTGCAAATTGAAGCACAA+TGG 0.602440 4_4:-8327733 Msa0667740:CDS
TTTCTGATAGGTTTCCTCAG+TGG 0.605665 4_4:-8329422 Msa0667740:CDS
GTAAAAGGGATGTGAAACAC+TGG 0.606650 4_4:-8328044 Msa0667740:intron
CTAAAAGGAACAAACAATTG+TGG 0.626693 4_4:-8329335 Msa0667740:CDS
GTGGAGCATACAAGAGACGA+GGG 0.645056 4_4:-8329403 Msa0667740:CDS
AGTGGAGCATACAAGAGACG+AGG 0.673401 4_4:-8329404 Msa0667740:CDS
GGAGTTTCTGATGATTCGAG+CGG 0.680605 4_4:-8329382 Msa0667740:CDS
ATACCTTATATCGAGTAACA+AGG 0.693644 4_4:+8329238 None:intergenic
ACCGATGACGATGAAGACGA+TGG 0.696270 4_4:-8327893 Msa0667740:CDS
GTCTCTTGTATGCTCCACTG+AGG 0.764902 4_4:+8329408 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTCATATATTTCATATT+TGG - chr4_4:8327837-8327856 Msa0667740:CDS 10.0%
!! ATTAATTAACAATAAGAAAA+GGG + chr4_4:8328040-8328059 None:intergenic 10.0%
!! AGTAATTAATATAAATTCAT+AGG + chr4_4:8328531-8328550 None:intergenic 10.0%
!! ATAAAATAGTTAAGATTAAT+TGG - chr4_4:8328660-8328679 Msa0667740:intron 10.0%
!! TTATTCATATATTTCATATT+TGG - chr4_4:8327837-8327856 Msa0667740:CDS 10.0%
!! ATTAATTAACAATAAGAAAA+GGG + chr4_4:8328040-8328059 None:intergenic 10.0%
!! AGTAATTAATATAAATTCAT+AGG + chr4_4:8328531-8328550 None:intergenic 10.0%
!! ATAAAATAGTTAAGATTAAT+TGG - chr4_4:8328660-8328679 Msa0667740:intron 10.0%
!! GATTAATTAACAATAAGAAA+AGG + chr4_4:8328041-8328060 None:intergenic 15.0%
!! AAATTTCTTATCAAATAATC+AGG - chr4_4:8328159-8328178 Msa0667740:intron 15.0%
!! AATTTCTTATCAAATAATCA+GGG - chr4_4:8328160-8328179 Msa0667740:intron 15.0%
!! TAAATATTGCATTATATAAG+TGG + chr4_4:8328472-8328491 None:intergenic 15.0%
!!! TAATCTTAACTATTTTATTG+AGG + chr4_4:8328658-8328677 None:intergenic 15.0%
!! GTGATATAGAAAATTAATAT+CGG - chr4_4:8328760-8328779 Msa0667740:intron 15.0%
!!! TTTATTTTTTGACATGTAAA+AGG - chr4_4:8328983-8329002 Msa0667740:intron 15.0%
!!! TTATTTTTTGACATGTAAAA+GGG - chr4_4:8328984-8329003 Msa0667740:intron 15.0%
!! GATTAATTAACAATAAGAAA+AGG + chr4_4:8328041-8328060 None:intergenic 15.0%
!! AAATTTCTTATCAAATAATC+AGG - chr4_4:8328159-8328178 Msa0667740:intron 15.0%
!! AATTTCTTATCAAATAATCA+GGG - chr4_4:8328160-8328179 Msa0667740:intron 15.0%
!! TAAATATTGCATTATATAAG+TGG + chr4_4:8328472-8328491 None:intergenic 15.0%
!!! TAATCTTAACTATTTTATTG+AGG + chr4_4:8328658-8328677 None:intergenic 15.0%
!! GTGATATAGAAAATTAATAT+CGG - chr4_4:8328760-8328779 Msa0667740:intron 15.0%
!!! TTTATTTTTTGACATGTAAA+AGG - chr4_4:8328983-8329002 Msa0667740:intron 15.0%
!!! TTATTTTTTGACATGTAAAA+GGG - chr4_4:8328984-8329003 Msa0667740:intron 15.0%
!! TTAGTCTACTAAATATCATA+AGG - chr4_4:8328106-8328125 Msa0667740:intron 20.0%
!! TCACAAAATTATCAATAGAA+TGG + chr4_4:8328744-8328763 None:intergenic 20.0%
!! AAGAAAATAATGATGAGTTT+AGG + chr4_4:8328844-8328863 None:intergenic 20.0%
!!! ATTTTCTTCATCACAAAATT+TGG - chr4_4:8328856-8328875 Msa0667740:intron 20.0%
!! TTAGTCTACTAAATATCATA+AGG - chr4_4:8328106-8328125 Msa0667740:intron 20.0%
!! TCACAAAATTATCAATAGAA+TGG + chr4_4:8328744-8328763 None:intergenic 20.0%
!! AAGAAAATAATGATGAGTTT+AGG + chr4_4:8328844-8328863 None:intergenic 20.0%
!!! ATTTTCTTCATCACAAAATT+TGG - chr4_4:8328856-8328875 Msa0667740:intron 20.0%
! TAAAAGGAACAAACAATTGT+GGG - chr4_4:8327708-8327727 Msa0667740:CDS 25.0%
! ACTTTATGATACTTACAACA+TGG - chr4_4:8328378-8328397 Msa0667740:intron 25.0%
! CTTTATGATACTTACAACAT+GGG - chr4_4:8328379-8328398 Msa0667740:intron 25.0%
! ATTAGTGTTAATGTAAGCAA+AGG - chr4_4:8328708-8328727 Msa0667740:intron 25.0%
!!! TTTTTGTTGCATGGTTTTAT+AGG - chr4_4:8328934-8328953 Msa0667740:intron 25.0%
!! ATAGGTTTTTATATGTGCTA+AGG - chr4_4:8328952-8328971 Msa0667740:intron 25.0%
!! TAGGTTTTTATATGTGCTAA+GGG - chr4_4:8328953-8328972 Msa0667740:intron 25.0%
!! GTTTGAAGTTCATTGTAAAA+TGG + chr4_4:8329050-8329069 None:intergenic 25.0%
!! AAATTTTGGATGATTTCATG+AGG - chr4_4:8329282-8329301 Msa0667740:CDS 25.0%
! TAAAAGGAACAAACAATTGT+GGG - chr4_4:8327708-8327727 Msa0667740:CDS 25.0%
! ACTTTATGATACTTACAACA+TGG - chr4_4:8328378-8328397 Msa0667740:intron 25.0%
! CTTTATGATACTTACAACAT+GGG - chr4_4:8328379-8328398 Msa0667740:intron 25.0%
! ATTAGTGTTAATGTAAGCAA+AGG - chr4_4:8328708-8328727 Msa0667740:intron 25.0%
!!! TTTTTGTTGCATGGTTTTAT+AGG - chr4_4:8328934-8328953 Msa0667740:intron 25.0%
!! ATAGGTTTTTATATGTGCTA+AGG - chr4_4:8328952-8328971 Msa0667740:intron 25.0%
!! TAGGTTTTTATATGTGCTAA+GGG - chr4_4:8328953-8328972 Msa0667740:intron 25.0%
!! GTTTGAAGTTCATTGTAAAA+TGG + chr4_4:8329050-8329069 None:intergenic 25.0%
!! AAATTTTGGATGATTTCATG+AGG - chr4_4:8329282-8329301 Msa0667740:CDS 25.0%
AAACTTTCATGGAGACTAAA+AGG - chr4_4:8327692-8327711 Msa0667740:CDS 30.0%
CTAAAAGGAACAAACAATTG+TGG - chr4_4:8327707-8327726 Msa0667740:CDS 30.0%
! AGTTATTTCCAACCATATGA+AGG - chr4_4:8327732-8327751 Msa0667740:CDS 30.0%
AAACCTTGTTACTCGATATA+AGG - chr4_4:8327801-8327820 Msa0667740:CDS 30.0%
ATACCTTATATCGAGTAACA+AGG + chr4_4:8327807-8327826 None:intergenic 30.0%
TGTAAATCATGTATCCAACT+GGG + chr4_4:8327952-8327971 None:intergenic 30.0%
ATGTAAATCATGTATCCAAC+TGG + chr4_4:8327953-8327972 None:intergenic 30.0%
CTAATGTTTATCCATATGCT+TGG + chr4_4:8328090-8328109 None:intergenic 30.0%
AAATATCATAAGGTGAGAAC+TGG - chr4_4:8328116-8328135 Msa0667740:intron 30.0%
AATATCATAAGGTGAGAACT+GGG - chr4_4:8328117-8328136 Msa0667740:intron 30.0%
CTAAAACACGCTATAATATG+AGG + chr4_4:8328567-8328586 None:intergenic 30.0%
! CTCATATTATAGCGTGTTTT+AGG - chr4_4:8328565-8328584 Msa0667740:intron 30.0%
!!! GTCACTGATTTTACTTTATG+TGG + chr4_4:8328802-8328821 None:intergenic 30.0%
! GAGTTAAGATTTTTGTTGCA+TGG - chr4_4:8328925-8328944 Msa0667740:intron 30.0%
CAGAAAGAAGAAAAAAGCAA+AGG - chr4_4:8329211-8329230 Msa0667740:intron 30.0%
CCAAAATTTCCTTCAAATTC+CGG + chr4_4:8329271-8329290 None:intergenic 30.0%
AATTGCAAATTGAAGCACAA+TGG - chr4_4:8329309-8329328 Msa0667740:CDS 30.0%
AAACTTTCATGGAGACTAAA+AGG - chr4_4:8327692-8327711 Msa0667740:CDS 30.0%
CTAAAAGGAACAAACAATTG+TGG - chr4_4:8327707-8327726 Msa0667740:CDS 30.0%
! AGTTATTTCCAACCATATGA+AGG - chr4_4:8327732-8327751 Msa0667740:CDS 30.0%
AAACCTTGTTACTCGATATA+AGG - chr4_4:8327801-8327820 Msa0667740:CDS 30.0%
ATACCTTATATCGAGTAACA+AGG + chr4_4:8327807-8327826 None:intergenic 30.0%
TGTAAATCATGTATCCAACT+GGG + chr4_4:8327952-8327971 None:intergenic 30.0%
ATGTAAATCATGTATCCAAC+TGG + chr4_4:8327953-8327972 None:intergenic 30.0%
CTAATGTTTATCCATATGCT+TGG + chr4_4:8328090-8328109 None:intergenic 30.0%
AAATATCATAAGGTGAGAAC+TGG - chr4_4:8328116-8328135 Msa0667740:intron 30.0%
AATATCATAAGGTGAGAACT+GGG - chr4_4:8328117-8328136 Msa0667740:intron 30.0%
CTAAAACACGCTATAATATG+AGG + chr4_4:8328567-8328586 None:intergenic 30.0%
! CTCATATTATAGCGTGTTTT+AGG - chr4_4:8328565-8328584 Msa0667740:intron 30.0%
!!! GTCACTGATTTTACTTTATG+TGG + chr4_4:8328802-8328821 None:intergenic 30.0%
! GAGTTAAGATTTTTGTTGCA+TGG - chr4_4:8328925-8328944 Msa0667740:intron 30.0%
CAGAAAGAAGAAAAAAGCAA+AGG - chr4_4:8329211-8329230 Msa0667740:intron 30.0%
CCAAAATTTCCTTCAAATTC+CGG + chr4_4:8329271-8329290 None:intergenic 30.0%
AATTGCAAATTGAAGCACAA+TGG - chr4_4:8329309-8329328 Msa0667740:CDS 30.0%
!!! GTTGTCTTTGGTTTTTGTGA+TGG + chr4_4:8327546-8327565 None:intergenic 35.0%
! GTTGTTGTTGATGTTGTCTT+TGG + chr4_4:8327558-8327577 None:intergenic 35.0%
! ACGTTGTTGATGTTTCTGAT+AGG - chr4_4:8327608-8327627 Msa0667740:CDS 35.0%
TTCCAACCATATGAAGGAAA+AGG - chr4_4:8327738-8327757 Msa0667740:CDS 35.0%
TCCAACCATATGAAGGAAAA+GGG - chr4_4:8327739-8327758 Msa0667740:CDS 35.0%
GTAAATCATGTATCCAACTG+GGG + chr4_4:8327951-8327970 None:intergenic 35.0%
TCTTATCAAATAATCAGGGC+TGG - chr4_4:8328164-8328183 Msa0667740:intron 35.0%
ATTCTAAGTCCAAAATCCGA+TGG + chr4_4:8328225-8328244 None:intergenic 35.0%
ACTTTGTCATGAAGCAAAGA+TGG - chr4_4:8328345-8328364 Msa0667740:intron 35.0%
TTTAGGCCTCAAAATGTGTT+AGG - chr4_4:8328582-8328601 Msa0667740:intron 35.0%
TTGCAACATTATTTGCAGTG+CGG + chr4_4:8328608-8328627 None:intergenic 35.0%
! CTTCATCACAAAATTTGGTG+AGG - chr4_4:8328861-8328880 Msa0667740:intron 35.0%
! GTTTTTATATGTGCTAAGGG+TGG - chr4_4:8328956-8328975 Msa0667740:intron 35.0%
! TTCAAACAATTTTCACCGCA+AGG - chr4_4:8329063-8329082 Msa0667740:intron 35.0%
TAACATTCTTTGCATCCTTG+CGG + chr4_4:8329081-8329100 None:intergenic 35.0%
CAAGGATGCAAAGAATGTTA+TGG - chr4_4:8329081-8329100 Msa0667740:intron 35.0%
! TTATGGACTAAAGCTGAAGA+AGG - chr4_4:8329098-8329117 Msa0667740:intron 35.0%
GTAGTAGCAAAAGTTTCTTC+CGG - chr4_4:8329249-8329268 Msa0667740:CDS 35.0%
AAGTTTCTTCCGGAATTTGA+AGG - chr4_4:8329259-8329278 Msa0667740:CDS 35.0%
! CCGGAATTTGAAGGAAATTT+TGG - chr4_4:8329268-8329287 Msa0667740:CDS 35.0%
TTGAAGCAAGAGAGAATGAA+AGG - chr4_4:8329342-8329361 Msa0667740:CDS 35.0%
AGAGAATGAGAGGTTATTGA+TGG - chr4_4:8329406-8329425 Msa0667740:CDS 35.0%
GGTTATTGATGGAACAAAGA+TGG - chr4_4:8329417-8329436 Msa0667740:CDS 35.0%
GAGTATAAGAGAAGAAGCTA+GGG - chr4_4:8329460-8329479 Msa0667740:CDS 35.0%
!!! GTTGTCTTTGGTTTTTGTGA+TGG + chr4_4:8327546-8327565 None:intergenic 35.0%
! GTTGTTGTTGATGTTGTCTT+TGG + chr4_4:8327558-8327577 None:intergenic 35.0%
! ACGTTGTTGATGTTTCTGAT+AGG - chr4_4:8327608-8327627 Msa0667740:CDS 35.0%
TTCCAACCATATGAAGGAAA+AGG - chr4_4:8327738-8327757 Msa0667740:CDS 35.0%
TCCAACCATATGAAGGAAAA+GGG - chr4_4:8327739-8327758 Msa0667740:CDS 35.0%
GTAAATCATGTATCCAACTG+GGG + chr4_4:8327951-8327970 None:intergenic 35.0%
TCTTATCAAATAATCAGGGC+TGG - chr4_4:8328164-8328183 Msa0667740:intron 35.0%
ATTCTAAGTCCAAAATCCGA+TGG + chr4_4:8328225-8328244 None:intergenic 35.0%
ACTTTGTCATGAAGCAAAGA+TGG - chr4_4:8328345-8328364 Msa0667740:intron 35.0%
TTTAGGCCTCAAAATGTGTT+AGG - chr4_4:8328582-8328601 Msa0667740:intron 35.0%
TTGCAACATTATTTGCAGTG+CGG + chr4_4:8328608-8328627 None:intergenic 35.0%
! CTTCATCACAAAATTTGGTG+AGG - chr4_4:8328861-8328880 Msa0667740:intron 35.0%
! GTTTTTATATGTGCTAAGGG+TGG - chr4_4:8328956-8328975 Msa0667740:intron 35.0%
! TTCAAACAATTTTCACCGCA+AGG - chr4_4:8329063-8329082 Msa0667740:intron 35.0%
TAACATTCTTTGCATCCTTG+CGG + chr4_4:8329081-8329100 None:intergenic 35.0%
CAAGGATGCAAAGAATGTTA+TGG - chr4_4:8329081-8329100 Msa0667740:intron 35.0%
! TTATGGACTAAAGCTGAAGA+AGG - chr4_4:8329098-8329117 Msa0667740:intron 35.0%
GTAGTAGCAAAAGTTTCTTC+CGG - chr4_4:8329249-8329268 Msa0667740:CDS 35.0%
AAGTTTCTTCCGGAATTTGA+AGG - chr4_4:8329259-8329278 Msa0667740:CDS 35.0%
! CCGGAATTTGAAGGAAATTT+TGG - chr4_4:8329268-8329287 Msa0667740:CDS 35.0%
TTGAAGCAAGAGAGAATGAA+AGG - chr4_4:8329342-8329361 Msa0667740:CDS 35.0%
AGAGAATGAGAGGTTATTGA+TGG - chr4_4:8329406-8329425 Msa0667740:CDS 35.0%
GGTTATTGATGGAACAAAGA+TGG - chr4_4:8329417-8329436 Msa0667740:CDS 35.0%
GAGTATAAGAGAAGAAGCTA+GGG - chr4_4:8329460-8329479 Msa0667740:CDS 35.0%
TTTCTGATAGGTTTCCTCAG+TGG - chr4_4:8327620-8327639 Msa0667740:CDS 40.0%
GGAGCTTGATCAAACTTTCA+TGG - chr4_4:8327681-8327700 Msa0667740:CDS 40.0%
! ACCCTTTTCCTTCATATGGT+TGG + chr4_4:8327743-8327762 None:intergenic 40.0%
! GGTAACCCTTTTCCTTCATA+TGG + chr4_4:8327747-8327766 None:intergenic 40.0%
TACACTGTTCTGCACTTCTA+TGG + chr4_4:8327768-8327787 None:intergenic 40.0%
TATGATCTAAGTTCCCCAGT+TGG - chr4_4:8327935-8327954 Msa0667740:CDS 40.0%
AAATTGTCACGCCAAGCATA+TGG - chr4_4:8328076-8328095 Msa0667740:intron 40.0%
GTAAAAGGGATGTGAAACAC+TGG - chr4_4:8328998-8329017 Msa0667740:intron 40.0%
TGAAGAAGGATCGAAGAAGA+AGG - chr4_4:8329112-8329131 Msa0667740:intron 40.0%
AAGTGAAGCAGTGTCTCAAA+AGG - chr4_4:8329181-8329200 Msa0667740:intron 40.0%
AGTGAAGCAGTGTCTCAAAA+GGG - chr4_4:8329182-8329201 Msa0667740:intron 40.0%
GCAAATTGAAGCACAATGGA+TGG - chr4_4:8329313-8329332 Msa0667740:CDS 40.0%
AAGCAAGAGAGAATGAAAGG+AGG - chr4_4:8329345-8329364 Msa0667740:CDS 40.0%
AGAGAATGAAAGGAGGTTGA+GGG - chr4_4:8329352-8329371 Msa0667740:CDS 40.0%
!! TGGAAGTGTTAGAGAATGAG+AGG - chr4_4:8329396-8329415 Msa0667740:CDS 40.0%
TGGAACAAAGATGGAGAGAA+AGG - chr4_4:8329426-8329445 Msa0667740:CDS 40.0%
GGAACAAAGATGGAGAGAAA+GGG - chr4_4:8329427-8329446 Msa0667740:CDS 40.0%
GGAGTATAAGAGAAGAAGCT+AGG - chr4_4:8329459-8329478 Msa0667740:CDS 40.0%
TTTCTGATAGGTTTCCTCAG+TGG - chr4_4:8327620-8327639 Msa0667740:CDS 40.0%
GGAGCTTGATCAAACTTTCA+TGG - chr4_4:8327681-8327700 Msa0667740:CDS 40.0%
! ACCCTTTTCCTTCATATGGT+TGG + chr4_4:8327743-8327762 None:intergenic 40.0%
! GGTAACCCTTTTCCTTCATA+TGG + chr4_4:8327747-8327766 None:intergenic 40.0%
TACACTGTTCTGCACTTCTA+TGG + chr4_4:8327768-8327787 None:intergenic 40.0%
TATGATCTAAGTTCCCCAGT+TGG - chr4_4:8327935-8327954 Msa0667740:CDS 40.0%
AAATTGTCACGCCAAGCATA+TGG - chr4_4:8328076-8328095 Msa0667740:intron 40.0%
GTAAAAGGGATGTGAAACAC+TGG - chr4_4:8328998-8329017 Msa0667740:intron 40.0%
TGAAGAAGGATCGAAGAAGA+AGG - chr4_4:8329112-8329131 Msa0667740:intron 40.0%
AAGTGAAGCAGTGTCTCAAA+AGG - chr4_4:8329181-8329200 Msa0667740:intron 40.0%
AGTGAAGCAGTGTCTCAAAA+GGG - chr4_4:8329182-8329201 Msa0667740:intron 40.0%
GCAAATTGAAGCACAATGGA+TGG - chr4_4:8329313-8329332 Msa0667740:CDS 40.0%
AAGCAAGAGAGAATGAAAGG+AGG - chr4_4:8329345-8329364 Msa0667740:CDS 40.0%
AGAGAATGAAAGGAGGTTGA+GGG - chr4_4:8329352-8329371 Msa0667740:CDS 40.0%
!! TGGAAGTGTTAGAGAATGAG+AGG - chr4_4:8329396-8329415 Msa0667740:CDS 40.0%
TGGAACAAAGATGGAGAGAA+AGG - chr4_4:8329426-8329445 Msa0667740:CDS 40.0%
GGAACAAAGATGGAGAGAAA+GGG - chr4_4:8329427-8329446 Msa0667740:CDS 40.0%
GGAGTATAAGAGAAGAAGCT+AGG - chr4_4:8329459-8329478 Msa0667740:CDS 40.0%
GGAGTTTCTGATGATTCGAG+CGG - chr4_4:8327660-8327679 Msa0667740:CDS 45.0%
CAGAACAGTGTAAGTGCAAG+TGG - chr4_4:8327776-8327795 Msa0667740:CDS 45.0%
!! AAATAATCAGGGCTGGCCTA+AGG - chr4_4:8328171-8328190 Msa0667740:intron 45.0%
!! AATAATCAGGGCTGGCCTAA+GGG - chr4_4:8328172-8328191 Msa0667740:intron 45.0%
! CTTCATCGTCATCGGTTGAA+AGG + chr4_4:8329145-8329164 None:intergenic 45.0%
ACCATCGTCTTCATCGTCAT+CGG + chr4_4:8329153-8329172 None:intergenic 45.0%
GAGAGAATGAAAGGAGGTTG+AGG - chr4_4:8329351-8329370 Msa0667740:CDS 45.0%
GATGGAGTGGAGACAACAAA+TGG - chr4_4:8329376-8329395 Msa0667740:CDS 45.0%
GGAGAGAAAGGGAAGAACAA+AGG - chr4_4:8329438-8329457 Msa0667740:CDS 45.0%
GGAGTTTCTGATGATTCGAG+CGG - chr4_4:8327660-8327679 Msa0667740:CDS 45.0%
CAGAACAGTGTAAGTGCAAG+TGG - chr4_4:8327776-8327795 Msa0667740:CDS 45.0%
!! AAATAATCAGGGCTGGCCTA+AGG - chr4_4:8328171-8328190 Msa0667740:intron 45.0%
!! AATAATCAGGGCTGGCCTAA+GGG - chr4_4:8328172-8328191 Msa0667740:intron 45.0%
! CTTCATCGTCATCGGTTGAA+AGG + chr4_4:8329145-8329164 None:intergenic 45.0%
ACCATCGTCTTCATCGTCAT+CGG + chr4_4:8329153-8329172 None:intergenic 45.0%
GAGAGAATGAAAGGAGGTTG+AGG - chr4_4:8329351-8329370 Msa0667740:CDS 45.0%
GATGGAGTGGAGACAACAAA+TGG - chr4_4:8329376-8329395 Msa0667740:CDS 45.0%
GGAGAGAAAGGGAAGAACAA+AGG - chr4_4:8329438-8329457 Msa0667740:CDS 45.0%
GTCTCTTGTATGCTCCACTG+AGG + chr4_4:8327637-8327656 None:intergenic 50.0%
AGTGGAGCATACAAGAGACG+AGG - chr4_4:8327638-8327657 Msa0667740:CDS 50.0%
GTGGAGCATACAAGAGACGA+GGG - chr4_4:8327639-8327658 Msa0667740:CDS 50.0%
AATCCGATGGCCTAAAGCGA+GGG + chr4_4:8328212-8328231 None:intergenic 50.0%
AAATCCGATGGCCTAAAGCG+AGG + chr4_4:8328213-8328232 None:intergenic 50.0%
!! CGCTTTAGGCCATCGGATTT+TGG - chr4_4:8328213-8328232 Msa0667740:intron 50.0%
! GTGCGGCCTAACACATTTTG+AGG + chr4_4:8328591-8328610 None:intergenic 50.0%
ACCGATGACGATGAAGACGA+TGG - chr4_4:8329149-8329168 Msa0667740:intron 50.0%
GCAAAGGTAGACAGCGAAAG+CGG - chr4_4:8329227-8329246 Msa0667740:intron 50.0%
TGAAAGGAGGTTGAGGGAGA+TGG - chr4_4:8329358-8329377 Msa0667740:CDS 50.0%
AAGAAGCTAGGGCTGAGAAG+AGG - chr4_4:8329471-8329490 Msa0667740:CDS 50.0%
AGAAGCTAGGGCTGAGAAGA+GGG - chr4_4:8329472-8329491 Msa0667740:CDS 50.0%
GTCTCTTGTATGCTCCACTG+AGG + chr4_4:8327637-8327656 None:intergenic 50.0%
AGTGGAGCATACAAGAGACG+AGG - chr4_4:8327638-8327657 Msa0667740:CDS 50.0%
GTGGAGCATACAAGAGACGA+GGG - chr4_4:8327639-8327658 Msa0667740:CDS 50.0%
AATCCGATGGCCTAAAGCGA+GGG + chr4_4:8328212-8328231 None:intergenic 50.0%
AAATCCGATGGCCTAAAGCG+AGG + chr4_4:8328213-8328232 None:intergenic 50.0%
!! CGCTTTAGGCCATCGGATTT+TGG - chr4_4:8328213-8328232 Msa0667740:intron 50.0%
! GTGCGGCCTAACACATTTTG+AGG + chr4_4:8328591-8328610 None:intergenic 50.0%
ACCGATGACGATGAAGACGA+TGG - chr4_4:8329149-8329168 Msa0667740:intron 50.0%
GCAAAGGTAGACAGCGAAAG+CGG - chr4_4:8329227-8329246 Msa0667740:intron 50.0%
TGAAAGGAGGTTGAGGGAGA+TGG - chr4_4:8329358-8329377 Msa0667740:CDS 50.0%
AAGAAGCTAGGGCTGAGAAG+AGG - chr4_4:8329471-8329490 Msa0667740:CDS 50.0%
AGAAGCTAGGGCTGAGAAGA+GGG - chr4_4:8329472-8329491 Msa0667740:CDS 50.0%
! GCTTGGGTTGCCTTACCCTT+AGG + chr4_4:8328190-8328209 None:intergenic 55.0%
ATGGCCTAAAGCGAGGGCTT+GGG + chr4_4:8328206-8328225 None:intergenic 55.0%
! AAGCCCTCGCTTTAGGCCAT+CGG - chr4_4:8328206-8328225 Msa0667740:intron 55.0%
TTCCGCCAGTGCTGCACTTA+CGG - chr4_4:8328441-8328460 Msa0667740:intron 55.0%
! AAGTGCCGTAAGTGCAGCAC+TGG + chr4_4:8328449-8328468 None:intergenic 55.0%
! GCTTGGGTTGCCTTACCCTT+AGG + chr4_4:8328190-8328209 None:intergenic 55.0%
ATGGCCTAAAGCGAGGGCTT+GGG + chr4_4:8328206-8328225 None:intergenic 55.0%
! AAGCCCTCGCTTTAGGCCAT+CGG - chr4_4:8328206-8328225 Msa0667740:intron 55.0%
TTCCGCCAGTGCTGCACTTA+CGG - chr4_4:8328441-8328460 Msa0667740:intron 55.0%
! AAGTGCCGTAAGTGCAGCAC+TGG + chr4_4:8328449-8328468 None:intergenic 55.0%
!! TCAGGGCTGGCCTAAGGGTA+AGG - chr4_4:8328177-8328196 Msa0667740:intron 60.0%
GCAACCCAAGCCCTCGCTTT+AGG - chr4_4:8328199-8328218 Msa0667740:intron 60.0%
GATGGCCTAAAGCGAGGGCT+TGG + chr4_4:8328207-8328226 None:intergenic 60.0%
! TGCCGTAAGTGCAGCACTGG+CGG + chr4_4:8328446-8328465 None:intergenic 60.0%
GGAGGTTGAGGGAGATGGAG+TGG - chr4_4:8329363-8329382 Msa0667740:CDS 60.0%
!! TCAGGGCTGGCCTAAGGGTA+AGG - chr4_4:8328177-8328196 Msa0667740:intron 60.0%
GCAACCCAAGCCCTCGCTTT+AGG - chr4_4:8328199-8328218 Msa0667740:intron 60.0%
GATGGCCTAAAGCGAGGGCT+TGG + chr4_4:8328207-8328226 None:intergenic 60.0%
! TGCCGTAAGTGCAGCACTGG+CGG + chr4_4:8328446-8328465 None:intergenic 60.0%
GGAGGTTGAGGGAGATGGAG+TGG - chr4_4:8329363-8329382 Msa0667740:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 8327526 8329538 8327526 ID=Msa0667740;Name=Msa0667740
chr4_4 mRNA 8327526 8329538 8327526 ID=Msa0667740-mRNA-1;Parent=Msa0667740;Name=Msa0667740-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|276
chr4_4 exon 8329242 8329538 8329242 ID=Msa0667740-mRNA-1:exon:2714;Parent=Msa0667740-mRNA-1
chr4_4 exon 8327526 8328059 8327526 ID=Msa0667740-mRNA-1:exon:2713;Parent=Msa0667740-mRNA-1
chr4_4 CDS 8329242 8329538 8329242 ID=Msa0667740-mRNA-1:cds;Parent=Msa0667740-mRNA-1
chr4_4 CDS 8327526 8328059 8327526 ID=Msa0667740-mRNA-1:cds;Parent=Msa0667740-mRNA-1
Gene Sequence

>Msa0667740

ATGGAAGGGCATCAATTCCATCACAAAAACCAAAGACAACATCAACAACAACAATTTCATCAGAATATAAATAACACTATTAACGTTGTTGATGTTTCTGATAGGTTTCCTCAGTGGAGCATACAAGAGACGAGGGAGTTTCTGATGATTCGAGCGGAGCTTGATCAAACTTTCATGGAGACTAAAAGGAACAAACAATTGTGGGAAGTTATTTCCAACCATATGAAGGAAAAGGGTTACCATAGAAGTGCAGAACAGTGTAAGTGCAAGTGGAAAAACCTTGTTACTCGATATAAGGGATGTGAAACACTGGAGACAGAAGTGTTGAAACAACAATTTCCATTTTACAATGAACTTCAAACAATTTTCACCGCAAGGATGCAAAGAATGTTATGGACTAAAGCTGAAGAAGGATCGAAGAAGAAGGCGACGCACCTTTCAACCGATGACGATGAAGACGATGGTAATGAAGAAAGTGAAGCAGTGTCTCAAAAGGGTAGCAGCAGAAAGAAGAAAAAAGCAAAGGTAGACAGCGAAAGCGGTAGTAGCAAAAGTTTCTTCCGGAATTTGAAGGAAATTTTGGATGATTTCATGAGGCAACAATTGCAAATTGAAGCACAATGGATGGAAGCATTTGAAGCAAGAGAGAATGAAAGGAGGTTGAGGGAGATGGAGTGGAGACAACAAATGGAAGTGTTAGAGAATGAGAGGTTATTGATGGAACAAAGATGGAGAGAAAGGGAAGAACAAAGGAGTATAAGAGAAGAAGCTAGGGCTGAGAAGAGGGATGCTTTGATCACAGCTCTATTAAACAAGTTAGAGAGACAATAG

Protein sequence

>Msa0667740

MEGHQFHHKNQRQHQQQQFHQNINNTINVVDVSDRFPQWSIQETREFLMIRAELDQTFMETKRNKQLWEVISNHMKEKGYHRSAEQCKCKWKNLVTRYKGCETLETEVLKQQFPFYNELQTIFTARMQRMLWTKAEEGSKKKATHLSTDDDEDDGNEESEAVSQKGSSRKKKKAKVDSESGSSKSFFRNLKEILDDFMRQQLQIEAQWMEAFEARENERRLREMEWRQQMEVLENERLLMEQRWREREEQRSIREEARAEKRDALITALLNKLERQ*