Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0448520 | XP_013459353.1 | 97.959 | 392 | 7 | 1 | 1 | 392 | 1 | 391 | 0.0 | 788 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0448520 | sp|P93841|ISPE_SOLLC | 75.000 | 380 | 93 | 1 | 6 | 383 | 8 | 387 | 0.0 | 601 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0448520 | A0A072UU85 | 97.959 | 392 | 7 | 1 | 1 | 392 | 1 | 391 | 0.0 | 788 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0066850 | Msa0448520 | 0.836106 | 1.136733e-56 | -8.615850e-47 |
| Msa0144340 | Msa0448520 | 0.802297 | 5.997462e-49 | -8.615850e-47 |
| Msa0163410 | Msa0448520 | 0.802289 | 6.020321e-49 | -8.615850e-47 |
| Msa0171920 | Msa0448520 | 0.802424 | 5.648276e-49 | -8.615850e-47 |
| Msa0176710 | Msa0448520 | 0.827362 | 1.631070e-54 | -8.615850e-47 |
| Msa0233200 | Msa0448520 | 0.812148 | 4.904287e-51 | -8.615850e-47 |
| Msa0426480 | Msa0448520 | 0.803789 | 2.947598e-49 | -8.615850e-47 |
| Msa0448520 | Msa0467080 | 0.804970 | 1.672466e-49 | -8.615850e-47 |
| Msa0448520 | Msa0468020 | 0.805574 | 1.249985e-49 | -8.615850e-47 |
| Msa0448520 | Msa0612730 | 0.828769 | 7.476802e-55 | -8.615850e-47 |
| Msa0448520 | Msa0615850 | 0.814241 | 1.702697e-51 | -8.615850e-47 |
| Msa0448520 | Msa0623270 | 0.815268 | 1.008584e-51 | -8.615850e-47 |
| Msa0448520 | Msa0698900 | 0.803881 | 2.820790e-49 | -8.615850e-47 |
| Msa0448520 | Msa0702070 | 0.809550 | 1.790125e-50 | -8.615850e-47 |
| Msa0448520 | Msa0702120 | 0.802424 | 5.646656e-49 | -8.615850e-47 |
| Msa0448520 | Msa0712500 | 0.820334 | 7.245439e-53 | -8.615850e-47 |
| Msa0448520 | Msa0789800 | 0.816707 | 4.812378e-52 | -8.615850e-47 |
| Msa0448520 | Msa0813310 | 0.812195 | 4.791396e-51 | -8.615850e-47 |
| Msa0448520 | Msa0873830 | 0.818034 | 2.418922e-52 | -8.615850e-47 |
| Msa0448520 | Msa0882700 | 0.813702 | 2.238754e-51 | -8.615850e-47 |
| Msa0448520 | Msa1011060 | 0.800948 | 1.134039e-48 | -8.615850e-47 |
| Msa0448520 | Msa1199210 | 0.804830 | 1.788968e-49 | -8.615850e-47 |
| Msa0448520 | Msa1293530 | 0.807341 | 5.300092e-50 | -8.615850e-47 |
| Msa0448520 | Msa1309100 | 0.800827 | 1.200754e-48 | -8.615850e-47 |
| Msa0448520 | Msa1316720 | 0.812481 | 4.149367e-51 | -8.615850e-47 |
| Msa0448520 | Msa1380720 | 0.808399 | 3.157263e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0448520 | MtrunA17_Chr3g0091341 | 97.959 | 392 | 7 | 1 | 1 | 392 | 1 | 391 | 0.0 | 788 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0448520 | AT2G26930.1 | 79.279 | 333 | 69 | 0 | 54 | 386 | 42 | 374 | 0.0 | 560 |
Find 125 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAGATTCATTTGGATAAA+AGG | 0.121284 | 3_3:+29247438 | Msa0448520:intron |
| GTGAAGCTTTGGATGAAAAT+TGG | 0.210791 | 3_3:-29244754 | None:intergenic |
| TTAGTCGAAGATTGTTAATT+AGG | 0.212320 | 3_3:-29244604 | None:intergenic |
| TTAAGGCGCTTAATCTTTAC+AGG | 0.263692 | 3_3:+29247276 | Msa0448520:CDS |
| CGGGCACTGAAAAGTTCTTT+TGG | 0.268514 | 3_3:+29247306 | Msa0448520:CDS |
| GCAATGCTGCAACTGCATTA+TGG | 0.274231 | 3_3:+29247495 | Msa0448520:CDS |
| CCAACTGGGGCAGGGCTTGG+TGG | 0.276221 | 3_3:+29247464 | Msa0448520:CDS |
| GATGTTTGCATTAATGATTT+AGG | 0.283211 | 3_3:+29248364 | Msa0448520:CDS |
| CTCTTCCAGAAAACAATTAG+AGG | 0.286586 | 3_3:+29244821 | Msa0448520:CDS |
| GTTCCAACTGGGGCAGGGCT+TGG | 0.296992 | 3_3:+29247461 | Msa0448520:CDS |
| TGCCTCTCTAGTGAGAAAAT+TGG | 0.299369 | 3_3:-29249580 | None:intergenic |
| GTGATTAACTTACATGAAAC+AGG | 0.300913 | 3_3:-29246510 | None:intergenic |
| CAATCTCACTTGACCATTCC+TGG | 0.306728 | 3_3:-29247562 | None:intergenic |
| CAATGCTGCAACTGCATTAT+GGG | 0.341992 | 3_3:+29247496 | Msa0448520:CDS |
| TTGGTCTGAATTGAGGTAAA+TGG | 0.355433 | 3_3:-29244722 | None:intergenic |
| GAACAAAGTAAGCCTTGAAA+TGG | 0.355469 | 3_3:-29246338 | None:intergenic |
| CCCTCTTGTTGGTTATTCTC+AGG | 0.358444 | 3_3:-29246462 | None:intergenic |
| GGAAGCACAATTGTTGGAAT+TGG | 0.361037 | 3_3:+29249199 | Msa0448520:CDS |
| ACTGGGGCAGGGCTTGGTGG+TGG | 0.371790 | 3_3:+29247467 | Msa0448520:CDS |
| GGTTCTCATAAAACCTCAAC+AGG | 0.389815 | 3_3:+29248152 | Msa0448520:CDS |
| AAAAGGGTTCCAACTGGGGC+AGG | 0.395258 | 3_3:+29247455 | Msa0448520:CDS |
| TGTATGTTCTCAGATTCATT+TGG | 0.395758 | 3_3:+29247430 | Msa0448520:intron |
| TGGAGTTCTTTCTCCGTGGC+AGG | 0.403243 | 3_3:-29247542 | None:intergenic |
| TGTCGACCCTTCAATATTGC+TGG | 0.404170 | 3_3:+29248312 | Msa0448520:CDS |
| GGAAGACGGGTATCATGATT+TGG | 0.405148 | 3_3:+29246483 | Msa0448520:CDS |
| CAGGAATGGTCAAGTGAGAT+TGG | 0.412432 | 3_3:+29247563 | Msa0448520:CDS |
| TGAAAATTGGAAGACCCATT+TGG | 0.416730 | 3_3:-29244741 | None:intergenic |
| AATAATTGGTTTACCTTGCA+AGG | 0.418347 | 3_3:-29246364 | None:intergenic |
| TCAGATTCATTTGGATAAAA+GGG | 0.420419 | 3_3:+29247439 | Msa0448520:intron |
| ATACCCGTCTTCCCTCTTGT+TGG | 0.422369 | 3_3:-29246473 | None:intergenic |
| AGCTTGTTTATCCTTTCATC+AGG | 0.425534 | 3_3:-29246289 | None:intergenic |
| GGTCTATGAAAGTGAAGCTT+TGG | 0.431944 | 3_3:-29244765 | None:intergenic |
| ATAAGGAGGCTCCCATTTCA+AGG | 0.436768 | 3_3:+29246326 | Msa0448520:CDS |
| TTGGATAAAAGGGTTCCAAC+TGG | 0.440000 | 3_3:+29247449 | Msa0448520:CDS |
| ATCTAATGATACAGCGTCTA+CGG | 0.440171 | 3_3:+29248272 | Msa0448520:intron |
| TGTAGAGATAAACTTTCATA+TGG | 0.442734 | 3_3:+29249705 | Msa0448520:three_prime_UTR |
| GCCTTGTCCACCAATGTGTC+CGG | 0.443451 | 3_3:+29247128 | Msa0448520:CDS |
| TTACCTCAATTCAGACCAAA+TGG | 0.443933 | 3_3:+29244726 | Msa0448520:CDS |
| ACCTCTTGACGATAGGAATC+TGG | 0.444574 | 3_3:+29247154 | Msa0448520:CDS |
| TAAATGAATTGTGGAGGATC+AGG | 0.455794 | 3_3:-29249226 | None:intergenic |
| CTCGCCTCGACCAGTGCAAT+AGG | 0.456777 | 3_3:-29247621 | None:intergenic |
| TACTTTGTTCTCTCCTTGCA+AGG | 0.464170 | 3_3:+29246351 | Msa0448520:CDS |
| TGCAGCGGAAGCACAATTGT+TGG | 0.467813 | 3_3:+29249193 | Msa0448520:intron |
| TATGATGCTGTCTTTATGTC+AGG | 0.470938 | 3_3:+29248796 | Msa0448520:CDS |
| AAGGGTCGACATTACTAGTC+TGG | 0.474461 | 3_3:-29248300 | None:intergenic |
| ATTGGTGGACAAGGCATCCT+TGG | 0.478362 | 3_3:-29247120 | None:intergenic |
| GTTTCAGTCGTTTGAGAGAA+GGG | 0.480550 | 3_3:-29248744 | None:intergenic |
| GACCCATTTGGTCTGAATTG+AGG | 0.481688 | 3_3:-29244729 | None:intergenic |
| CGAATTACAGCAGCTGGTCG+TGG | 0.485929 | 3_3:+29248769 | Msa0448520:CDS |
| ATCCTCTCCAGCAATATTGA+AGG | 0.488811 | 3_3:-29248319 | None:intergenic |
| TGCGAGTAGTTATTTATCCA+TGG | 0.489731 | 3_3:+29244644 | Msa0448520:exon |
| GCTAGCTGATCAAATTGATA+AGG | 0.491164 | 3_3:+29246309 | Msa0448520:CDS |
| TACCGAGACGTATTCTTGTC+AGG | 0.495195 | 3_3:+29249262 | Msa0448520:CDS |
| AAGGTGACAAAGAGAACTTA+AGG | 0.498041 | 3_3:-29247091 | None:intergenic |
| TGGATAAAAGGGTTCCAACT+GGG | 0.499633 | 3_3:+29247450 | Msa0448520:CDS |
| AAGGCATCCTTGGTATTTGA+AGG | 0.502198 | 3_3:-29247110 | None:intergenic |
| TGCCACGGAGAAAGAACTCC+AGG | 0.503166 | 3_3:+29247544 | Msa0448520:CDS |
| AATGATACAGCGTCTACGGC+TGG | 0.507265 | 3_3:+29248276 | Msa0448520:intron |
| GACAATAACTACTGCCGTTG+CGG | 0.509601 | 3_3:-29249889 | None:intergenic |
| GTTATCATTTGCAGAACCTC+CGG | 0.511513 | 3_3:+29248708 | Msa0448520:intron |
| TGTTTCAGTCGTTTGAGAGA+AGG | 0.518235 | 3_3:-29248745 | None:intergenic |
| AACAAAGTAAGCCTTGAAAT+GGG | 0.519272 | 3_3:-29246337 | None:intergenic |
| GCAGCCTATTGCACTGGTCG+AGG | 0.528989 | 3_3:+29247617 | Msa0448520:CDS |
| ATGGATGGTTCTTCTGAAAG+TGG | 0.529200 | 3_3:-29244703 | None:intergenic |
| TGGATGGTTCTTCTGAAAGT+GGG | 0.532145 | 3_3:-29244702 | None:intergenic |
| AACGGTGCAGCCTATTGCAC+TGG | 0.532541 | 3_3:+29247611 | Msa0448520:CDS |
| CCACCAAGCCCTGCCCCAGT+TGG | 0.534086 | 3_3:-29247464 | None:intergenic |
| AAACAGCGAATTACAGCAGC+TGG | 0.534386 | 3_3:+29248763 | Msa0448520:CDS |
| TACCTCAATTCAGACCAAAT+GGG | 0.535582 | 3_3:+29244727 | Msa0448520:CDS |
| TTGCTGGAGAGGATTTCAAC+GGG | 0.546693 | 3_3:+29248328 | Msa0448520:CDS |
| ATGGTGGAGCTTTGCCGCAA+CGG | 0.547509 | 3_3:+29249875 | Msa0448520:three_prime_UTR |
| AGGTACGCCGGACACATTGG+TGG | 0.547935 | 3_3:-29247135 | None:intergenic |
| GAAATAAATGACTCAGAGGT+AGG | 0.550781 | 3_3:-29249633 | None:intergenic |
| TTCTGAAAGTGGGGATAGAG+TGG | 0.551464 | 3_3:-29244692 | None:intergenic |
| GAATATCCGAAGATACTAGC+GGG | 0.551637 | 3_3:-29248125 | None:intergenic |
| AACCTTAAGGTGATAAGTCT+AGG | 0.556822 | 3_3:+29247062 | Msa0448520:intron |
| GCCGGACACATTGGTGGACA+AGG | 0.557132 | 3_3:-29247129 | None:intergenic |
| TCATCATCGTAAATGAATTG+TGG | 0.563101 | 3_3:-29249235 | None:intergenic |
| ACCCTTCAATATTGCTGGAG+AGG | 0.564664 | 3_3:+29248317 | Msa0448520:CDS |
| TAATCTTTACAGGAAGAAGA+CGG | 0.565856 | 3_3:+29247286 | Msa0448520:CDS |
| ATAACCAACAAGAGGGAAGA+CGG | 0.568717 | 3_3:+29246469 | Msa0448520:CDS |
| TCTTGTATATGATTATAAGA+TGG | 0.571073 | 3_3:+29249676 | Msa0448520:three_prime_UTR |
| TTCAACTGCAGAAGTCTACA+AGG | 0.572084 | 3_3:+29248179 | Msa0448520:CDS |
| AAAGGGTTCCAACTGGGGCA+GGG | 0.575421 | 3_3:+29247456 | Msa0448520:CDS |
| ATTCAGTGGTTGTCCTGCCA+CGG | 0.576663 | 3_3:+29247529 | Msa0448520:CDS |
| AAGAGGTACGCCGGACACAT+TGG | 0.577117 | 3_3:-29247138 | None:intergenic |
| TAACCAACAAGAGGGAAGAC+GGG | 0.586466 | 3_3:+29246470 | Msa0448520:CDS |
| CCGGCGTACCTCTTGACGAT+AGG | 0.587645 | 3_3:+29247147 | Msa0448520:CDS |
| ACAATTCATTTACGATGATG+AGG | 0.587793 | 3_3:+29249237 | Msa0448520:CDS |
| GTTTGTCAAAGTCAAAGCCA+TGG | 0.589156 | 3_3:+29244791 | Msa0448520:CDS |
| CGGAGAAAGAACTCCAGGAA+TGG | 0.589868 | 3_3:+29247549 | Msa0448520:CDS |
| AGCTGATCAAATTGATAAGG+AGG | 0.590553 | 3_3:+29246312 | Msa0448520:CDS |
| TCTGGAAGAGTCAGAAACCA+TGG | 0.590890 | 3_3:-29244808 | None:intergenic |
| TCCTGAGAATAACCAACAAG+AGG | 0.592621 | 3_3:+29246461 | Msa0448520:CDS |
| AGTATCTTCGGATATTCCAA+TGG | 0.593726 | 3_3:+29248131 | Msa0448520:CDS |
| GGATAAAAGGGTTCCAACTG+GGG | 0.594768 | 3_3:+29247451 | Msa0448520:CDS |
| CCTGAGAATAACCAACAAGA+GGG | 0.595343 | 3_3:+29246462 | Msa0448520:CDS |
| AATCTTTACAGGAAGAAGAC+GGG | 0.596753 | 3_3:+29247287 | Msa0448520:CDS |
| GCTTTGACTTTGACAAACTG+AGG | 0.596833 | 3_3:-29244786 | None:intergenic |
| TCAGAGGTAGGAGTTGAAGC+AGG | 0.604315 | 3_3:-29249621 | None:intergenic |
| TTTGTCACCTTCAAATACCA+AGG | 0.608885 | 3_3:+29247103 | Msa0448520:CDS |
| AAGAAACTGAGAAGAAGCCA+TGG | 0.611350 | 3_3:-29244661 | None:intergenic |
| GCAGTTGAACAAGCCTGTTG+AGG | 0.611379 | 3_3:-29248165 | None:intergenic |
| TCGTGTATGATCCTGATGAA+AGG | 0.615450 | 3_3:+29246278 | Msa0448520:CDS |
| ACCAGATTCCTATCGTCAAG+AGG | 0.617737 | 3_3:-29247155 | None:intergenic |
| ATTGCTGGAGAGGATTTCAA+CGG | 0.619536 | 3_3:+29248327 | Msa0448520:CDS |
| TCCTCTCCAGCAATATTGAA+GGG | 0.622612 | 3_3:-29248318 | None:intergenic |
| ATGCTGTCTTTATGTCAGGA+AGG | 0.626781 | 3_3:+29248800 | Msa0448520:CDS |
| GAAGGGAGAACTTCAAACGC+CGG | 0.627869 | 3_3:-29248727 | None:intergenic |
| TGGGCAGCAAATCAATTCAG+TGG | 0.635251 | 3_3:+29247515 | Msa0448520:CDS |
| TTCAGAAATAAATGACTCAG+AGG | 0.636755 | 3_3:-29249637 | None:intergenic |
| TTCCTGGAGTTCTTTCTCCG+TGG | 0.642458 | 3_3:-29247546 | None:intergenic |
| GGATGGTTCTTCTGAAAGTG+GGG | 0.644147 | 3_3:-29244701 | None:intergenic |
| TCATCGTAAATGAATTGTGG+AGG | 0.645589 | 3_3:-29249232 | None:intergenic |
| GACCTGACAAGAATACGTCT+CGG | 0.646538 | 3_3:-29249264 | None:intergenic |
| TGATTAACTTACATGAAACA+GGG | 0.656638 | 3_3:-29246509 | None:intergenic |
| CTATTGCACTGGTCGAGGCG+AGG | 0.657650 | 3_3:+29247622 | Msa0448520:CDS |
| CTGGAGAGGATTTCAACGGG+TGG | 0.659780 | 3_3:+29248331 | Msa0448520:CDS |
| CCTATCGTCAAGAGGTACGC+CGG | 0.662530 | 3_3:-29247147 | None:intergenic |
| TCACTAGAGAGGCAAATGAG+TGG | 0.688683 | 3_3:+29249589 | Msa0448520:CDS |
| GGAATATCCGAAGATACTAG+CGG | 0.697348 | 3_3:-29248126 | None:intergenic |
| AATATCCGAAGATACTAGCG+GGG | 0.703814 | 3_3:-29248124 | None:intergenic |
| GGGAGAACTTCAAACGCCGG+AGG | 0.707690 | 3_3:-29248724 | None:intergenic |
| TCTGAATTGAGGTAAATGGA+TGG | 0.708929 | 3_3:-29244718 | None:intergenic |
| ATATCCGAAGATACTAGCGG+GGG | 0.775643 | 3_3:-29248123 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAATAAAAAATTA+AGG | - | chr3_3:29247833-29247852 | None:intergenic | 0.0% |
| !!! | TTAATTTTTTATTTTTTTTT+AGG | + | chr3_3:29247832-29247851 | Msa0448520:intron | 0.0% |
| !!! | TGATTTTTTGAAATTATTAA+CGG | + | chr3_3:29245175-29245194 | Msa0448520:intron | 10.0% |
| !! | AAGGTAAAGTTATTTATATT+TGG | + | chr3_3:29245568-29245587 | Msa0448520:intron | 15.0% |
| !!! | TTTGTACATTTTTTTTTTGA+GGG | + | chr3_3:29246950-29246969 | Msa0448520:intron | 15.0% |
| !! | GCTTAAATATTTAATTATGA+AGG | + | chr3_3:29247883-29247902 | Msa0448520:intron | 15.0% |
| !! | ACAAGATATTGAAAAATATT+AGG | - | chr3_3:29248845-29248864 | None:intergenic | 15.0% |
| !! | ATGATAAAATAATTTCCTTT+GGG | + | chr3_3:29249384-29249403 | Msa0448520:intron | 15.0% |
| !! | TTCAGTAAAAAAAAAAGAAA+AGG | - | chr3_3:29249496-29249515 | None:intergenic | 15.0% |
| !! | AAAATGAACTAAAAAATATG+CGG | - | chr3_3:29249742-29249761 | None:intergenic | 15.0% |
| !! | AAAAAGAAAGAAAAACATTA+TGG | + | chr3_3:29249856-29249875 | Msa0448520:three_prime_UTR | 15.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | + | chr3_3:29245023-29245042 | Msa0448520:intron | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+TGG | + | chr3_3:29245023-29245042 | Msa0448520:intron | 20.0% |
| !!! | TCTACATAATATTAAGTTGA+AGG | + | chr3_3:29245549-29245568 | Msa0448520:intron | 20.0% |
| !! | TAAGTTAGAATTAATTCTGA+AGG | + | chr3_3:29245678-29245697 | Msa0448520:intron | 20.0% |
| !!! | TAATCAATTTTACATGTGTT+TGG | + | chr3_3:29245723-29245742 | Msa0448520:intron | 20.0% |
| !!! | TCTAACTTAAATTCACTTTT+GGG | + | chr3_3:29245978-29245997 | Msa0448520:intron | 20.0% |
| !!! | AATATACCAAAATCACTTTT+TGG | - | chr3_3:29246008-29246027 | None:intergenic | 20.0% |
| !!! | AAAGTGATTTTGGTATATTT+TGG | + | chr3_3:29246009-29246028 | Msa0448520:intron | 20.0% |
| !!! | AAGTGATTTTGGTATATTTT+GGG | + | chr3_3:29246010-29246029 | Msa0448520:intron | 20.0% |
| !! | TAACTTAGAATCAATTCTAT+AGG | - | chr3_3:29246042-29246061 | None:intergenic | 20.0% |
| !! | AATGTAAAATGATTTATGCT+CGG | - | chr3_3:29246127-29246146 | None:intergenic | 20.0% |
| !!! | CTTTGTACATTTTTTTTTTG+AGG | + | chr3_3:29246949-29246968 | Msa0448520:intron | 20.0% |
| !!! | TCTCTTTTTACAGATTATTA+AGG | + | chr3_3:29247259-29247278 | Msa0448520:intron | 20.0% |
| !! | AATTGCATCTTTATATTACT+TGG | + | chr3_3:29247383-29247402 | Msa0448520:intron | 20.0% |
| !!! | TAGATATATTCATTTTGTCT+TGG | - | chr3_3:29247945-29247964 | None:intergenic | 20.0% |
| !! | ACATAAGATGATAAACTTTA+GGG | - | chr3_3:29249152-29249171 | None:intergenic | 20.0% |
| !! | TACATAAGATGATAAACTTT+AGG | - | chr3_3:29249153-29249172 | None:intergenic | 20.0% |
| !! | CATGATAAAATAATTTCCTT+TGG | + | chr3_3:29249383-29249402 | Msa0448520:intron | 20.0% |
| !! | TCTTGTATATGATTATAAGA+TGG | + | chr3_3:29249676-29249695 | Msa0448520:three_prime_UTR | 20.0% |
| !! | TGACATGTGTTTATGTTTTT+CGG | - | chr3_3:29244561-29244580 | None:intergenic | 25.0% |
| ! | TTAGTCGAAGATTGTTAATT+AGG | - | chr3_3:29244607-29244626 | None:intergenic | 25.0% |
| ! | TAGCATTTGTTTAACTGAAT+TGG | + | chr3_3:29244909-29244928 | Msa0448520:intron | 25.0% |
| !! | TTTGAAATTATTAACGGTGT+TGG | + | chr3_3:29245181-29245200 | Msa0448520:intron | 25.0% |
| !!! | TAAACCTCTAGAATCAATTT+TGG | - | chr3_3:29245760-29245779 | None:intergenic | 25.0% |
| !! | AGAATTGATTCTAACATGTT+TGG | + | chr3_3:29245779-29245798 | Msa0448520:intron | 25.0% |
| !! | GTCTAACTTAAATTCACTTT+TGG | + | chr3_3:29245977-29245996 | Msa0448520:intron | 25.0% |
| !!! | AGTGATTTTGGTATATTTTG+GGG | + | chr3_3:29246011-29246030 | Msa0448520:intron | 25.0% |
| !! | AAACCAATTATTCTTTTGCT+TGG | + | chr3_3:29246375-29246394 | Msa0448520:intron | 25.0% |
| !! | AACCAATTATTCTTTTGCTT+GGG | + | chr3_3:29246376-29246395 | Msa0448520:intron | 25.0% |
| ! | TGATTAACTTACATGAAACA+GGG | - | chr3_3:29246512-29246531 | None:intergenic | 25.0% |
| ! | CATGTAAGTTAATCACAATT+TGG | + | chr3_3:29246517-29246536 | Msa0448520:intron | 25.0% |
| ! | TCACAATTTGGTAAATTCTT+CGG | + | chr3_3:29246529-29246548 | Msa0448520:intron | 25.0% |
| ! | AGTCATCAAAATTACAAATC+AGG | + | chr3_3:29246632-29246651 | Msa0448520:intron | 25.0% |
| ! | TTAGTCCAACAAAAAATTTG+TGG | - | chr3_3:29246990-29247009 | None:intergenic | 25.0% |
| !!! | AACAGTGCTATTATTTTCTT+CGG | + | chr3_3:29247337-29247356 | Msa0448520:intron | 25.0% |
| ! | TCAGATTCATTTGGATAAAA+GGG | + | chr3_3:29247439-29247458 | Msa0448520:intron | 25.0% |
| ! | CTATCCATGATAAAAATTCT+GGG | - | chr3_3:29247793-29247812 | None:intergenic | 25.0% |
| !! | AATTTTTATCATGGATAGGA+AGG | + | chr3_3:29247795-29247814 | Msa0448520:intron | 25.0% |
| !! | ATTTTTATCATGGATAGGAA+GGG | + | chr3_3:29247796-29247815 | Msa0448520:intron | 25.0% |
| !!! | TTTTGTGACTTTAAAGAATG+TGG | - | chr3_3:29248244-29248263 | None:intergenic | 25.0% |
| ! | GATGTTTGCATTAATGATTT+AGG | + | chr3_3:29248364-29248383 | Msa0448520:CDS | 25.0% |
| !!! | CTTTATTTTTTCACTTTCAC+TGG | + | chr3_3:29248421-29248440 | Msa0448520:intron | 25.0% |
| ! | AAGTTAACAATGTCAATGAT+AGG | - | chr3_3:29248612-29248631 | None:intergenic | 25.0% |
| ! | GAATTAGAACTACGATATAA+AGG | - | chr3_3:29248977-29248996 | None:intergenic | 25.0% |
| ! | TAATATTTACTTTGCTCTCA+TGG | + | chr3_3:29249101-29249120 | Msa0448520:intron | 25.0% |
| ! | CATAAGATGATAAACTTTAG+GGG | - | chr3_3:29249151-29249170 | None:intergenic | 25.0% |
| ! | TAACTAAATTCAATTCCCAA+AGG | - | chr3_3:29249402-29249421 | None:intergenic | 25.0% |
| ! | CTGAAGTTATTTACTTTACA+TGG | + | chr3_3:29249511-29249530 | Msa0448520:intron | 25.0% |
| ! | TCTGCAATTGGAAATATTAA+AGG | - | chr3_3:29249558-29249577 | None:intergenic | 25.0% |
| ! | TGTAGAGATAAACTTTCATA+TGG | + | chr3_3:29249705-29249724 | Msa0448520:three_prime_UTR | 25.0% |
| ! | AAGAAAGAAAAACATTATGG+TGG | + | chr3_3:29249859-29249878 | Msa0448520:three_prime_UTR | 25.0% |
| ! | ACATGTGTTTATGTTTTTCG+GGG | - | chr3_3:29244559-29244578 | None:intergenic | 30.0% |
| ! | GACATGTGTTTATGTTTTTC+GGG | - | chr3_3:29244560-29244579 | None:intergenic | 30.0% |
| ! | ACAAACCTCTAATTGTTTTC+TGG | - | chr3_3:29244829-29244848 | None:intergenic | 30.0% |
| AGTTTGAAAACTTGAATCAG+AGG | - | chr3_3:29245245-29245264 | None:intergenic | 30.0% | |
| ! | TCAAGTTTTCAAACTTTCAG+TGG | + | chr3_3:29244889-29244908 | Msa0448520:intron | 30.0% |
| TTCAGTGTAATTGTATGTGT+CGG | - | chr3_3:29244998-29245017 | None:intergenic | 30.0% | |
| ! | CTCAAAATCAATTTTCCTCA+CGG | - | chr3_3:29245120-29245139 | None:intergenic | 30.0% |
| !!! | TACATGTGTTTGGTTTTAGA+TGG | + | chr3_3:29245733-29245752 | Msa0448520:intron | 30.0% |
| !!! | ACATGTGTTTGGTTTTAGAT+GGG | + | chr3_3:29245734-29245753 | Msa0448520:intron | 30.0% |
| AACAAAGTAAGCCTTGAAAT+GGG | - | chr3_3:29246340-29246359 | None:intergenic | 30.0% | |
| ! | AATAATTGGTTTACCTTGCA+AGG | - | chr3_3:29246367-29246386 | None:intergenic | 30.0% |
| GTGATTAACTTACATGAAAC+AGG | - | chr3_3:29246513-29246532 | None:intergenic | 30.0% | |
| TACTGAGTTCGACATTATAA+AGG | - | chr3_3:29246587-29246606 | None:intergenic | 30.0% | |
| ACCAAAAATTTAAACACCGA+AGG | - | chr3_3:29246685-29246704 | None:intergenic | 30.0% | |
| !!! | CGGTGTTTAAATTTTTGGTA+CGG | + | chr3_3:29246686-29246705 | Msa0448520:intron | 30.0% |
| ATGTACAAAGTAGTGACTAA+TGG | - | chr3_3:29246939-29246958 | None:intergenic | 30.0% | |
| ! | TTTTCGACATTATCTTCTAC+TGG | + | chr3_3:29247203-29247222 | Msa0448520:intron | 30.0% |
| TAATCTTTACAGGAAGAAGA+CGG | + | chr3_3:29247286-29247305 | Msa0448520:CDS | 30.0% | |
| TGTATGTTCTCAGATTCATT+TGG | + | chr3_3:29247430-29247449 | Msa0448520:intron | 30.0% | |
| CTCAGATTCATTTGGATAAA+AGG | + | chr3_3:29247438-29247457 | Msa0448520:intron | 30.0% | |
| GCAGGAATTAGAAATATCAA+AGG | + | chr3_3:29247687-29247706 | Msa0448520:intron | 30.0% | |
| TGTCTTCTAGTATTATCCAT+AGG | - | chr3_3:29247770-29247789 | None:intergenic | 30.0% | |
| CCTATCCATGATAAAAATTC+TGG | - | chr3_3:29247794-29247813 | None:intergenic | 30.0% | |
| ! | CCAGAATTTTTATCATGGAT+AGG | + | chr3_3:29247791-29247810 | Msa0448520:intron | 30.0% |
| !! | TAACTTGTTTAACCTAATGC+AGG | + | chr3_3:29248013-29248032 | Msa0448520:intron | 30.0% |
| ! | TACAAGGTATCTGAATTTCA+AGG | + | chr3_3:29248195-29248214 | Msa0448520:intron | 30.0% |
| !! | ATTGATTTGAAAGACGTGAA+GGG | - | chr3_3:29248585-29248604 | None:intergenic | 30.0% |
| AACTCCAGTATTCAAAGAAT+GGG | - | chr3_3:29248879-29248898 | None:intergenic | 30.0% | |
| TAACTCCAGTATTCAAAGAA+TGG | - | chr3_3:29248880-29248899 | None:intergenic | 30.0% | |
| !! | CGTAGTTCTAATTCTGTTAA+AGG | + | chr3_3:29248983-29249002 | Msa0448520:intron | 30.0% |
| ACGAAGATTAAGTTTACTGA+AGG | + | chr3_3:29249017-29249036 | Msa0448520:intron | 30.0% | |
| AGTAAATATTAAACGACGCT+CGG | - | chr3_3:29249092-29249111 | None:intergenic | 30.0% | |
| TCATCATCGTAAATGAATTG+TGG | - | chr3_3:29249238-29249257 | None:intergenic | 30.0% | |
| ACAATTCATTTACGATGATG+AGG | + | chr3_3:29249237-29249256 | Msa0448520:CDS | 30.0% | |
| TTCAGAAATAAATGACTCAG+AGG | - | chr3_3:29249640-29249659 | None:intergenic | 30.0% | |
| !!! | TTTATGTTTTTCGGGGAATG+AGG | - | chr3_3:29244552-29244571 | None:intergenic | 35.0% |
| TGCGAGTAGTTATTTATCCA+TGG | + | chr3_3:29244644-29244663 | Msa0448520:exon | 35.0% | |
| TCTGAATTGAGGTAAATGGA+TGG | - | chr3_3:29244721-29244740 | None:intergenic | 35.0% | |
| TTGGTCTGAATTGAGGTAAA+TGG | - | chr3_3:29244725-29244744 | None:intergenic | 35.0% | |
| TTACCTCAATTCAGACCAAA+TGG | + | chr3_3:29244726-29244745 | Msa0448520:CDS | 35.0% | |
| TACCTCAATTCAGACCAAAT+GGG | + | chr3_3:29244727-29244746 | Msa0448520:CDS | 35.0% | |
| TGAAAATTGGAAGACCCATT+TGG | - | chr3_3:29244744-29244763 | None:intergenic | 35.0% | |
| !! | GTGAAGCTTTGGATGAAAAT+TGG | - | chr3_3:29244757-29244776 | None:intergenic | 35.0% |
| CTCTTCCAGAAAACAATTAG+AGG | + | chr3_3:29244821-29244840 | Msa0448520:CDS | 35.0% | |
| AAACATAAGAAACGAGAGGA+GGG | - | chr3_3:29244864-29244883 | None:intergenic | 35.0% | |
| AAAACATAAGAAACGAGAGG+AGG | - | chr3_3:29244865-29244884 | None:intergenic | 35.0% | |
| ! | TCCTCTCGTTTCTTATGTTT+TGG | + | chr3_3:29244864-29244883 | Msa0448520:intron | 35.0% |
| TCCAAAACATAAGAAACGAG+AGG | - | chr3_3:29244868-29244887 | None:intergenic | 35.0% | |
| TGTAATTGTATGTGTCGTGT+CGG | - | chr3_3:29244993-29245012 | None:intergenic | 35.0% | |
| AACTTTCAGTGGCATTTGTT+TGG | + | chr3_3:29245261-29245280 | Msa0448520:intron | 35.0% | |
| ! | ATGAAGCACTAATACAGACA+TGG | - | chr3_3:29245432-29245451 | None:intergenic | 35.0% |
| TGCTTCATACTTAGTGTGTT+TGG | + | chr3_3:29245444-29245463 | Msa0448520:intron | 35.0% | |
| ! | AAAAGTGAGTTGAAGGTCAA+GGG | - | chr3_3:29245926-29245945 | None:intergenic | 35.0% |
| ! | TAAAAGTGAGTTGAAGGTCA+AGG | - | chr3_3:29245927-29245946 | None:intergenic | 35.0% |
| ! | TCTGAGTAAAAGTGAGTTGA+AGG | - | chr3_3:29245933-29245952 | None:intergenic | 35.0% |
| ! | CCACAATGTTAATGGTTCTA+TGG | - | chr3_3:29246198-29246217 | None:intergenic | 35.0% |
| CCATAGAACCATTAACATTG+TGG | + | chr3_3:29246195-29246214 | Msa0448520:intron | 35.0% | |
| CATGCATACCACAATGTTAA+TGG | - | chr3_3:29246206-29246225 | None:intergenic | 35.0% | |
| ! | AGCTTGTTTATCCTTTCATC+AGG | - | chr3_3:29246292-29246311 | None:intergenic | 35.0% |
| GCTAGCTGATCAAATTGATA+AGG | + | chr3_3:29246309-29246328 | Msa0448520:CDS | 35.0% | |
| AGCTGATCAAATTGATAAGG+AGG | + | chr3_3:29246312-29246331 | Msa0448520:CDS | 35.0% | |
| GAACAAAGTAAGCCTTGAAA+TGG | - | chr3_3:29246341-29246360 | None:intergenic | 35.0% | |
| CTCCCAAGCAAAAGAATAAT+TGG | - | chr3_3:29246381-29246400 | None:intergenic | 35.0% | |
| !! | ATCTGTCTGCTTTTCTCTAA+GGG | - | chr3_3:29246612-29246631 | None:intergenic | 35.0% |
| !! | TATCTGTCTGCTTTTCTCTA+AGG | - | chr3_3:29246613-29246632 | None:intergenic | 35.0% |
| !!! | GCCTTCGGTGTTTAAATTTT+TGG | + | chr3_3:29246681-29246700 | Msa0448520:intron | 35.0% |
| TGAAATTGTTCCGCAATTTG+TGG | - | chr3_3:29246848-29246867 | None:intergenic | 35.0% | |
| TCAGTTGAATAGACCTTTCA+CGG | + | chr3_3:29246865-29246884 | Msa0448520:intron | 35.0% | |
| !! | TTTTTGAGGGATGAGAATTG+CGG | + | chr3_3:29246963-29246982 | Msa0448520:intron | 35.0% |
| ! | CTCATCTTTTCTGAACCTTA+AGG | + | chr3_3:29247049-29247068 | Msa0448520:intron | 35.0% |
| AACCTTAAGGTGATAAGTCT+AGG | + | chr3_3:29247062-29247081 | Msa0448520:intron | 35.0% | |
| AAGGTGACAAAGAGAACTTA+AGG | - | chr3_3:29247094-29247113 | None:intergenic | 35.0% | |
| TTTGTCACCTTCAAATACCA+AGG | + | chr3_3:29247103-29247122 | Msa0448520:CDS | 35.0% | |
| ! | TTAAGGCGCTTAATCTTTAC+AGG | + | chr3_3:29247276-29247295 | Msa0448520:CDS | 35.0% |
| AATCTTTACAGGAAGAAGAC+GGG | + | chr3_3:29247287-29247306 | Msa0448520:CDS | 35.0% | |
| ! | GTTCCCTTCTTTTTCTCTAA+CGG | + | chr3_3:29247593-29247612 | Msa0448520:CDS | 35.0% |
| AAAGGATGGTACCTAGTATT+TGG | - | chr3_3:29247653-29247672 | None:intergenic | 35.0% | |
| GTACCATCCTTTCTTGAAAT+CGG | + | chr3_3:29247661-29247680 | Msa0448520:intron | 35.0% | |
| AATCCGATTTCAAGAAAGGA+TGG | - | chr3_3:29247667-29247686 | None:intergenic | 35.0% | |
| CTTCTAGTATTATCCATAGG+AGG | - | chr3_3:29247767-29247786 | None:intergenic | 35.0% | |
| ! | GACACCCAGAATTTTTATCA+TGG | + | chr3_3:29247786-29247805 | Msa0448520:intron | 35.0% |
| !! | GAAGGTATTCATCTACGAAT+CGG | + | chr3_3:29247901-29247920 | Msa0448520:intron | 35.0% |
| ! | AAGGTATTCATCTACGAATC+GGG | + | chr3_3:29247902-29247921 | Msa0448520:intron | 35.0% |
| AGTATCTTCGGATATTCCAA+TGG | + | chr3_3:29248131-29248150 | Msa0448520:CDS | 35.0% | |
| !! | TGAGGTTTTATGAGAACCAT+TGG | - | chr3_3:29248150-29248169 | None:intergenic | 35.0% |
| ATCTAATGATACAGCGTCTA+CGG | + | chr3_3:29248272-29248291 | Msa0448520:intron | 35.0% | |
| ATTGCATGTGCTACATATCA+TGG | + | chr3_3:29248545-29248564 | Msa0448520:intron | 35.0% | |
| ! | TTGATTTGAAAGACGTGAAG+GGG | - | chr3_3:29248584-29248603 | None:intergenic | 35.0% |
| !! | GATTGATTTGAAAGACGTGA+AGG | - | chr3_3:29248586-29248605 | None:intergenic | 35.0% |
| ! | AGTTGATGTTATGATGCATG+TGG | - | chr3_3:29248656-29248675 | None:intergenic | 35.0% |
| ! | GTTCTGCAAATGATAACGAA+GGG | - | chr3_3:29248705-29248724 | None:intergenic | 35.0% |
| TATGATGCTGTCTTTATGTC+AGG | + | chr3_3:29248796-29248815 | Msa0448520:CDS | 35.0% | |
| TTTCCCCATTCTTTGAATAC+TGG | + | chr3_3:29248872-29248891 | Msa0448520:intron | 35.0% | |
| ACTCCAGTATTCAAAGAATG+GGG | - | chr3_3:29248878-29248897 | None:intergenic | 35.0% | |
| GAGATGAAATTTACCAGTAG+CGG | + | chr3_3:29248909-29248928 | Msa0448520:intron | 35.0% | |
| ! | ATTTCTAGAAAATCCGCTAC+TGG | - | chr3_3:29248925-29248944 | None:intergenic | 35.0% |
| TCTTAACATGTATCATGCAG+CGG | + | chr3_3:29249178-29249197 | Msa0448520:intron | 35.0% | |
| TAAATGAATTGTGGAGGATC+AGG | - | chr3_3:29249229-29249248 | None:intergenic | 35.0% | |
| TCATCGTAAATGAATTGTGG+AGG | - | chr3_3:29249235-29249254 | None:intergenic | 35.0% | |
| GTGAGATATGTACTGAGATT+AGG | - | chr3_3:29249337-29249356 | None:intergenic | 35.0% | |
| ! | ACTTTACATGGCTTCTAAAG+TGG | + | chr3_3:29249523-29249542 | Msa0448520:intron | 35.0% |
| AGAAAATTGGCATCTGCAAT+TGG | - | chr3_3:29249570-29249589 | None:intergenic | 35.0% | |
| GAAATAAATGACTCAGAGGT+AGG | - | chr3_3:29249636-29249655 | None:intergenic | 35.0% | |
| AAGAAACTGAGAAGAAGCCA+TGG | - | chr3_3:29244664-29244683 | None:intergenic | 40.0% | |
| ! | TGGATGGTTCTTCTGAAAGT+GGG | - | chr3_3:29244705-29244724 | None:intergenic | 40.0% |
| ! | ATGGATGGTTCTTCTGAAAG+TGG | - | chr3_3:29244706-29244725 | None:intergenic | 40.0% |
| GGTCTATGAAAGTGAAGCTT+TGG | - | chr3_3:29244768-29244787 | None:intergenic | 40.0% | |
| ! | GCTTTGACTTTGACAAACTG+AGG | - | chr3_3:29244789-29244808 | None:intergenic | 40.0% |
| GTTTGTCAAAGTCAAAGCCA+TGG | + | chr3_3:29244791-29244810 | Msa0448520:CDS | 40.0% | |
| AACATAAGAAACGAGAGGAG+GGG | - | chr3_3:29244863-29244882 | None:intergenic | 40.0% | |
| TAGTTAGTGTCTACGAAGCA+CGG | + | chr3_3:29244937-29244956 | Msa0448520:intron | 40.0% | |
| GTAATTGTATGTGTCGTGTC+GGG | - | chr3_3:29244992-29245011 | None:intergenic | 40.0% | |
| ! | ATTATTAGCGGTGTCAGTGT+CGG | + | chr3_3:29245035-29245054 | Msa0448520:intron | 40.0% |
| CTCGTGCTTCATACTTAGTT+TGG | + | chr3_3:29245089-29245108 | Msa0448520:intron | 40.0% | |
| AGGTCTATGAAGCACGAATA+CGG | - | chr3_3:29245225-29245244 | None:intergenic | 40.0% | |
| TTAGTTAGTGTCTACGAAGC+AGG | + | chr3_3:29244936-29244955 | Msa0448520:intron | 40.0% | |
| TAGTTAGTGTCTACGAAGCA+GGG | + | chr3_3:29244937-29244956 | Msa0448520:intron | 40.0% | |
| ! | GTAATTGTATGTGTCGGTGT+CGG | - | chr3_3:29245340-29245359 | None:intergenic | 40.0% |
| ! | TGGGCCAAAATTGATTCTAG+AGG | + | chr3_3:29245753-29245772 | Msa0448520:intron | 40.0% |
| ! | GGAGAGCCAAAAAGTGATTT+TGG | + | chr3_3:29245999-29246018 | Msa0448520:intron | 40.0% |
| TCGTGTATGATCCTGATGAA+AGG | + | chr3_3:29246278-29246297 | Msa0448520:CDS | 40.0% | |
| TACTTTGTTCTCTCCTTGCA+AGG | + | chr3_3:29246351-29246370 | Msa0448520:CDS | 40.0% | |
| TCCTGAGAATAACCAACAAG+AGG | + | chr3_3:29246461-29246480 | Msa0448520:CDS | 40.0% | |
| CCTGAGAATAACCAACAAGA+GGG | + | chr3_3:29246462-29246481 | Msa0448520:CDS | 40.0% | |
| ATAACCAACAAGAGGGAAGA+CGG | + | chr3_3:29246469-29246488 | Msa0448520:CDS | 40.0% | |
| !! | GTAAATTCTTCGGTGCGTTT+TGG | + | chr3_3:29246539-29246558 | Msa0448520:intron | 40.0% |
| !! | TCCTGAGTTGGTAATTCTGA+TGG | + | chr3_3:29246718-29246737 | Msa0448520:intron | 40.0% |
| TCCATCAGAATTACCAACTC+AGG | - | chr3_3:29246722-29246741 | None:intergenic | 40.0% | |
| !! | TTGTTTCTGCTACGCAATTG+CGG | - | chr3_3:29246768-29246787 | None:intergenic | 40.0% |
| CTATTCACGTTCAACAGTTG+TGG | + | chr3_3:29246813-29246832 | Msa0448520:intron | 40.0% | |
| GTGATTGTAGCCACAAATTG+CGG | + | chr3_3:29246835-29246854 | Msa0448520:intron | 40.0% | |
| AATAGAAATGCTGCCGTGAA+AGG | - | chr3_3:29246881-29246900 | None:intergenic | 40.0% | |
| TTCACGGCAGCATTTCTATT+CGG | + | chr3_3:29246881-29246900 | Msa0448520:intron | 40.0% | |
| !!! | GCGGTCCACAAATTTTTTGT+TGG | + | chr3_3:29246982-29247001 | Msa0448520:intron | 40.0% |
| CACCTAGACTTATCACCTTA+AGG | - | chr3_3:29247067-29247086 | None:intergenic | 40.0% | |
| ! | AAGGCATCCTTGGTATTTGA+AGG | - | chr3_3:29247113-29247132 | None:intergenic | 40.0% |
| !!! | GGGCACTGAAAAGTTCTTTT+GGG | + | chr3_3:29247307-29247326 | Msa0448520:CDS | 40.0% |
| TTGGATAAAAGGGTTCCAAC+TGG | + | chr3_3:29247449-29247468 | Msa0448520:CDS | 40.0% | |
| TGGATAAAAGGGTTCCAACT+GGG | + | chr3_3:29247450-29247469 | Msa0448520:CDS | 40.0% | |
| CAATGCTGCAACTGCATTAT+GGG | + | chr3_3:29247496-29247515 | Msa0448520:CDS | 40.0% | |
| GCACCGTTAGAGAAAAAGAA+GGG | - | chr3_3:29247599-29247618 | None:intergenic | 40.0% | |
| TGCACCGTTAGAGAAAAAGA+AGG | - | chr3_3:29247600-29247619 | None:intergenic | 40.0% | |
| CTGCAATCCGATTTCAAGAA+AGG | - | chr3_3:29247671-29247690 | None:intergenic | 40.0% | |
| CTTTCTTGAAATCGGATTGC+AGG | + | chr3_3:29247669-29247688 | Msa0448520:intron | 40.0% | |
| ATTGTCAATGTGTCCTCCTA+TGG | + | chr3_3:29247751-29247770 | Msa0448520:intron | 40.0% | |
| TGTGTGAGTTCTTGTAGTCA+AGG | - | chr3_3:29247985-29248004 | None:intergenic | 40.0% | |
| ! | TAATGCTAGCTTCCTGCATT+AGG | - | chr3_3:29248028-29248047 | None:intergenic | 40.0% |
| AATATCCGAAGATACTAGCG+GGG | - | chr3_3:29248127-29248146 | None:intergenic | 40.0% | |
| GAATATCCGAAGATACTAGC+GGG | - | chr3_3:29248128-29248147 | None:intergenic | 40.0% | |
| GGAATATCCGAAGATACTAG+CGG | - | chr3_3:29248129-29248148 | None:intergenic | 40.0% | |
| GGTTCTCATAAAACCTCAAC+AGG | + | chr3_3:29248152-29248171 | Msa0448520:CDS | 40.0% | |
| TTCAACTGCAGAAGTCTACA+AGG | + | chr3_3:29248179-29248198 | Msa0448520:CDS | 40.0% | |
| TCCTCTCCAGCAATATTGAA+GGG | - | chr3_3:29248321-29248340 | None:intergenic | 40.0% | |
| ATCCTCTCCAGCAATATTGA+AGG | - | chr3_3:29248322-29248341 | None:intergenic | 40.0% | |
| ATTGCTGGAGAGGATTTCAA+CGG | + | chr3_3:29248327-29248346 | Msa0448520:CDS | 40.0% | |
| ! | GGTTCTGCAAATGATAACGA+AGG | - | chr3_3:29248706-29248725 | None:intergenic | 40.0% |
| GTTATCATTTGCAGAACCTC+CGG | + | chr3_3:29248708-29248727 | Msa0448520:intron | 40.0% | |
| GTTTCAGTCGTTTGAGAGAA+GGG | - | chr3_3:29248747-29248766 | None:intergenic | 40.0% | |
| TGTTTCAGTCGTTTGAGAGA+AGG | - | chr3_3:29248748-29248767 | None:intergenic | 40.0% | |
| ATGCTGTCTTTATGTCAGGA+AGG | + | chr3_3:29248800-29248819 | Msa0448520:CDS | 40.0% | |
| !!! | CACTTCTTCGCTGATTTTAG+TGG | - | chr3_3:29249053-29249072 | None:intergenic | 40.0% |
| ! | GGAAGCACAATTGTTGGAAT+TGG | + | chr3_3:29249199-29249218 | Msa0448520:CDS | 40.0% |
| CAGGTCAGCTTCAATAACTT+AGG | + | chr3_3:29249281-29249300 | Msa0448520:intron | 40.0% | |
| TCAGTCTGATAGAGATCACA+TGG | + | chr3_3:29249450-29249469 | Msa0448520:intron | 40.0% | |
| TCTGATAGAGATCACATGGT+TGG | + | chr3_3:29249454-29249473 | Msa0448520:intron | 40.0% | |
| ! | TGCCAATTTTCTCACTAGAG+AGG | + | chr3_3:29249578-29249597 | Msa0448520:CDS | 40.0% |
| TGCCTCTCTAGTGAGAAAAT+TGG | - | chr3_3:29249583-29249602 | None:intergenic | 40.0% | |
| ! | TTCTGAAAGTGGGGATAGAG+TGG | - | chr3_3:29244695-29244714 | None:intergenic | 45.0% |
| ! | GGATGGTTCTTCTGAAAGTG+GGG | - | chr3_3:29244704-29244723 | None:intergenic | 45.0% |
| GACCCATTTGGTCTGAATTG+AGG | - | chr3_3:29244732-29244751 | None:intergenic | 45.0% | |
| TCTGGAAGAGTCAGAAACCA+TGG | - | chr3_3:29244811-29244830 | None:intergenic | 45.0% | |
| !! | CTTAGTTTGGTTCTGCTGTG+AGG | + | chr3_3:29245102-29245121 | Msa0448520:intron | 45.0% |
| GTTGATGTCCGTATCGTATC+TGG | + | chr3_3:29245403-29245422 | Msa0448520:intron | 45.0% | |
| CATGGACACCAGATACGATA+CGG | - | chr3_3:29245414-29245433 | None:intergenic | 45.0% | |
| TGAAGGTCAAGGGATGTGTT+TGG | - | chr3_3:29245916-29245935 | None:intergenic | 45.0% | |
| ATAAGGAGGCTCCCATTTCA+AGG | + | chr3_3:29246326-29246345 | Msa0448520:CDS | 45.0% | |
| ! | CCCTCTTGTTGGTTATTCTC+AGG | - | chr3_3:29246465-29246484 | None:intergenic | 45.0% |
| TAACCAACAAGAGGGAAGAC+GGG | + | chr3_3:29246470-29246489 | Msa0448520:CDS | 45.0% | |
| GGAAGACGGGTATCATGATT+TGG | + | chr3_3:29246483-29246502 | Msa0448520:CDS | 45.0% | |
| ACATGTTAGTCCCTCCATCA+GGG | + | chr3_3:29246655-29246674 | Msa0448520:intron | 45.0% | |
| CGGACTAATCTATCCTGAGT+TGG | + | chr3_3:29246706-29246725 | Msa0448520:intron | 45.0% | |
| AATGGCAAACTGCAGATCGT+GGG | - | chr3_3:29246921-29246940 | None:intergenic | 45.0% | |
| TAATGGCAAACTGCAGATCG+TGG | - | chr3_3:29246922-29246941 | None:intergenic | 45.0% | |
| ACCTCTTGACGATAGGAATC+TGG | + | chr3_3:29247154-29247173 | Msa0448520:CDS | 45.0% | |
| ACCAGATTCCTATCGTCAAG+AGG | - | chr3_3:29247158-29247177 | None:intergenic | 45.0% | |
| !!! | CGGGCACTGAAAAGTTCTTT+TGG | + | chr3_3:29247306-29247325 | Msa0448520:CDS | 45.0% |
| GGATAAAAGGGTTCCAACTG+GGG | + | chr3_3:29247451-29247470 | Msa0448520:CDS | 45.0% | |
| GCAATGCTGCAACTGCATTA+TGG | + | chr3_3:29247495-29247514 | Msa0448520:CDS | 45.0% | |
| TGGGCAGCAAATCAATTCAG+TGG | + | chr3_3:29247515-29247534 | Msa0448520:CDS | 45.0% | |
| CAATCTCACTTGACCATTCC+TGG | - | chr3_3:29247565-29247584 | None:intergenic | 45.0% | |
| CAGGAATGGTCAAGTGAGAT+TGG | + | chr3_3:29247563-29247582 | Msa0448520:CDS | 45.0% | |
| TAGTCAAGGTTGTCAACTCG+AGG | - | chr3_3:29247971-29247990 | None:intergenic | 45.0% | |
| ATATCCGAAGATACTAGCGG+GGG | - | chr3_3:29248126-29248145 | None:intergenic | 45.0% | |
| AAGGGTCGACATTACTAGTC+TGG | - | chr3_3:29248303-29248322 | None:intergenic | 45.0% | |
| TGTCGACCCTTCAATATTGC+TGG | + | chr3_3:29248312-29248331 | Msa0448520:CDS | 45.0% | |
| ACCCTTCAATATTGCTGGAG+AGG | + | chr3_3:29248317-29248336 | Msa0448520:CDS | 45.0% | |
| TTGCTGGAGAGGATTTCAAC+GGG | + | chr3_3:29248328-29248347 | Msa0448520:CDS | 45.0% | |
| CCTTCGCGTGAACTATATCA+TGG | - | chr3_3:29248486-29248505 | None:intergenic | 45.0% | |
| CCATGATATAGTTCACGCGA+AGG | + | chr3_3:29248483-29248502 | Msa0448520:intron | 45.0% | |
| AAACAGCGAATTACAGCAGC+TGG | + | chr3_3:29248763-29248782 | Msa0448520:CDS | 45.0% | |
| TACCGAGACGTATTCTTGTC+AGG | + | chr3_3:29249262-29249281 | Msa0448520:CDS | 45.0% | |
| GACCTGACAAGAATACGTCT+CGG | - | chr3_3:29249267-29249286 | None:intergenic | 45.0% | |
| TCACTAGAGAGGCAAATGAG+TGG | + | chr3_3:29249589-29249608 | Msa0448520:CDS | 45.0% | |
| GACAATAACTACTGCCGTTG+CGG | - | chr3_3:29249892-29249911 | None:intergenic | 45.0% | |
| TAAGAAACGAGAGGAGGGGA+AGG | - | chr3_3:29244859-29244878 | None:intergenic | 50.0% | |
| ACGAATACGGACACCAGACA+TGG | - | chr3_3:29245212-29245231 | None:intergenic | 50.0% | |
| CATGTGACATGCCTAATCCG+AGG | - | chr3_3:29245316-29245335 | None:intergenic | 50.0% | |
| GTGTGTTTGGTTATGCCGTG+AGG | + | chr3_3:29245457-29245476 | Msa0448520:intron | 50.0% | |
| ATACCCGTCTTCCCTCTTGT+TGG | - | chr3_3:29246476-29246495 | None:intergenic | 50.0% | |
| GACATGTTAGTCCCTCCATC+AGG | + | chr3_3:29246654-29246673 | Msa0448520:intron | 50.0% | |
| AGCAAAGAGCAAAGCTGCAG+AGG | - | chr3_3:29246791-29246810 | None:intergenic | 50.0% | |
| TCTGCAGCTTTGCTCTTTGC+TGG | + | chr3_3:29246790-29246809 | Msa0448520:intron | 50.0% | |
| ! | ATTGGTGGACAAGGCATCCT+TGG | - | chr3_3:29247123-29247142 | None:intergenic | 50.0% |
| ATTCAGTGGTTGTCCTGCCA+CGG | + | chr3_3:29247529-29247548 | Msa0448520:CDS | 50.0% | |
| TTCCTGGAGTTCTTTCTCCG+TGG | - | chr3_3:29247549-29247568 | None:intergenic | 50.0% | |
| CGGAGAAAGAACTCCAGGAA+TGG | + | chr3_3:29247549-29247568 | Msa0448520:CDS | 50.0% | |
| GCGAGGTGAGTCCAAATACT+AGG | + | chr3_3:29247639-29247658 | Msa0448520:intron | 50.0% | |
| TGTTCCCCCGCTAGTATCTT+CGG | + | chr3_3:29248119-29248138 | Msa0448520:CDS | 50.0% | |
| GCAGTTGAACAAGCCTGTTG+AGG | - | chr3_3:29248168-29248187 | None:intergenic | 50.0% | |
| AATGATACAGCGTCTACGGC+TGG | + | chr3_3:29248276-29248295 | Msa0448520:intron | 50.0% | |
| TTCACGCGAAGGTAATCGAG+CGG | + | chr3_3:29248494-29248513 | Msa0448520:intron | 50.0% | |
| GAAGGGAGAACTTCAAACGC+CGG | - | chr3_3:29248730-29248749 | None:intergenic | 50.0% | |
| ! | TGCAGCGGAAGCACAATTGT+TGG | + | chr3_3:29249193-29249212 | Msa0448520:intron | 50.0% |
| TCAGAGGTAGGAGTTGAAGC+AGG | - | chr3_3:29249624-29249643 | None:intergenic | 50.0% | |
| TACGAAGCACGGACACTCCA+CGG | + | chr3_3:29244948-29244967 | Msa0448520:intron | 55.0% | |
| TACGAAGCAGGGACACTCCT+CGG | + | chr3_3:29245296-29245315 | Msa0448520:intron | 55.0% | |
| GCCTTGTCCACCAATGTGTC+CGG | + | chr3_3:29247128-29247147 | Msa0448520:CDS | 55.0% | |
| ! | AAGAGGTACGCCGGACACAT+TGG | - | chr3_3:29247141-29247160 | None:intergenic | 55.0% |
| ! | CCTATCGTCAAGAGGTACGC+CGG | - | chr3_3:29247150-29247169 | None:intergenic | 55.0% |
| AAAAGGGTTCCAACTGGGGC+AGG | + | chr3_3:29247455-29247474 | Msa0448520:CDS | 55.0% | |
| AAAGGGTTCCAACTGGGGCA+GGG | + | chr3_3:29247456-29247475 | Msa0448520:CDS | 55.0% | |
| TGGAGTTCTTTCTCCGTGGC+AGG | - | chr3_3:29247545-29247564 | None:intergenic | 55.0% | |
| TGCCACGGAGAAAGAACTCC+AGG | + | chr3_3:29247544-29247563 | Msa0448520:CDS | 55.0% | |
| AACGGTGCAGCCTATTGCAC+TGG | + | chr3_3:29247611-29247630 | Msa0448520:CDS | 55.0% | |
| CTGGAGAGGATTTCAACGGG+TGG | + | chr3_3:29248331-29248350 | Msa0448520:CDS | 55.0% | |
| CGAATTACAGCAGCTGGTCG+TGG | + | chr3_3:29248769-29248788 | Msa0448520:CDS | 55.0% | |
| ! | ATGGTGGAGCTTTGCCGCAA+CGG | + | chr3_3:29249875-29249894 | Msa0448520:three_prime_UTR | 55.0% |
| GCACGGACACTCCACGGATT+AGG | + | chr3_3:29244954-29244973 | Msa0448520:intron | 60.0% | |
| ACGTGGACACGCCTAATCCG+TGG | - | chr3_3:29244968-29244987 | None:intergenic | 60.0% | |
| TATGTGTCGTGTCGGGCACG+TGG | - | chr3_3:29244985-29245004 | None:intergenic | 60.0% | |
| !! | GGTGTCAGTGTCGGTGTGTC+TGG | + | chr3_3:29245044-29245063 | Msa0448520:intron | 60.0% |
| !! | GGTGTTGGCGTGTCCATGTC+TGG | + | chr3_3:29245196-29245215 | Msa0448520:intron | 60.0% |
| GCAGGGACACTCCTCGGATT+AGG | + | chr3_3:29245302-29245321 | Msa0448520:intron | 60.0% | |
| CGAAGGCAGTCCCTGATGGA+GGG | - | chr3_3:29246668-29246687 | None:intergenic | 60.0% | |
| CCTCCATCAGGGACTGCCTT+CGG | + | chr3_3:29246666-29246685 | Msa0448520:intron | 60.0% | |
| ACACCGAAGGCAGTCCCTGA+TGG | - | chr3_3:29246672-29246691 | None:intergenic | 60.0% | |
| GGCAAACTGCAGATCGTGGG+CGG | - | chr3_3:29246918-29246937 | None:intergenic | 60.0% | |
| ! | GCCGGACACATTGGTGGACA+AGG | - | chr3_3:29247132-29247151 | None:intergenic | 60.0% |
| AGGTACGCCGGACACATTGG+TGG | - | chr3_3:29247138-29247157 | None:intergenic | 60.0% | |
| CCGGCGTACCTCTTGACGAT+AGG | + | chr3_3:29247147-29247166 | Msa0448520:CDS | 60.0% | |
| ! | GCAGCCTATTGCACTGGTCG+AGG | + | chr3_3:29247617-29247636 | Msa0448520:CDS | 60.0% |
| CTCGCCTCGACCAGTGCAAT+AGG | - | chr3_3:29247624-29247643 | None:intergenic | 60.0% | |
| ! | CTATTGCACTGGTCGAGGCG+AGG | + | chr3_3:29247622-29247641 | Msa0448520:CDS | 60.0% |
| GGGAGAACTTCAAACGCCGG+AGG | - | chr3_3:29248727-29248746 | None:intergenic | 60.0% | |
| CCGAAGGCAGTCCCTGATGG+AGG | - | chr3_3:29246669-29246688 | None:intergenic | 65.0% | |
| GTTCCAACTGGGGCAGGGCT+TGG | + | chr3_3:29247461-29247480 | Msa0448520:CDS | 65.0% | |
| CCACCAAGCCCTGCCCCAGT+TGG | - | chr3_3:29247467-29247486 | None:intergenic | 70.0% | |
| CCAACTGGGGCAGGGCTTGG+TGG | + | chr3_3:29247464-29247483 | Msa0448520:CDS | 70.0% | |
| !! | ACTGGGGCAGGGCTTGGTGG+TGG | + | chr3_3:29247467-29247486 | Msa0448520:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 29244500 | 29249913 | 29244500 | ID=Msa0448520;Name=Msa0448520 |
| chr3_3 | mRNA | 29244500 | 29249913 | 29244500 | ID=Msa0448520-mRNA-1;Parent=Msa0448520;Name=Msa0448520-mRNA-1;_AED=0.10;_eAED=0.10;_QI=132|1|1|1|0.81|0.83|12|245|392 |
| chr3_3 | exon | 29244500 | 29244557 | 29244500 | ID=Msa0448520-mRNA-1:exon:5524;Parent=Msa0448520-mRNA-1 |
| chr3_3 | exon | 29244589 | 29244842 | 29244589 | ID=Msa0448520-mRNA-1:exon:5525;Parent=Msa0448520-mRNA-1 |
| chr3_3 | exon | 29246277 | 29246372 | 29246277 | ID=Msa0448520-mRNA-1:exon:5526;Parent=Msa0448520-mRNA-1 |
| chr3_3 | exon | 29246451 | 29246519 | 29246451 | ID=Msa0448520-mRNA-1:exon:5527;Parent=Msa0448520-mRNA-1 |
| chr3_3 | exon | 29247071 | 29247175 | 29247071 | ID=Msa0448520-mRNA-1:exon:5528;Parent=Msa0448520-mRNA-1 |
| chr3_3 | exon | 29247272 | 29247328 | 29247272 | ID=Msa0448520-mRNA-1:exon:5529;Parent=Msa0448520-mRNA-1 |
| chr3_3 | exon | 29247443 | 29247643 | 29247443 | ID=Msa0448520-mRNA-1:exon:5530;Parent=Msa0448520-mRNA-1 |
| chr3_3 | exon | 29248108 | 29248200 | 29248108 | ID=Msa0448520-mRNA-1:exon:5531;Parent=Msa0448520-mRNA-1 |
| chr3_3 | exon | 29248286 | 29248385 | 29248286 | ID=Msa0448520-mRNA-1:exon:5532;Parent=Msa0448520-mRNA-1 |
| chr3_3 | exon | 29248722 | 29248821 | 29248722 | ID=Msa0448520-mRNA-1:exon:5533;Parent=Msa0448520-mRNA-1 |
| chr3_3 | exon | 29249198 | 29249283 | 29249198 | ID=Msa0448520-mRNA-1:exon:5534;Parent=Msa0448520-mRNA-1 |
| chr3_3 | exon | 29249577 | 29249913 | 29249577 | ID=Msa0448520-mRNA-1:exon:5535;Parent=Msa0448520-mRNA-1 |
| chr3_3 | five_prime_UTR | 29244500 | 29244557 | 29244500 | ID=Msa0448520-mRNA-1:five_prime_utr;Parent=Msa0448520-mRNA-1 |
| chr3_3 | five_prime_UTR | 29244589 | 29244662 | 29244589 | ID=Msa0448520-mRNA-1:five_prime_utr;Parent=Msa0448520-mRNA-1 |
| chr3_3 | CDS | 29244663 | 29244842 | 29244663 | ID=Msa0448520-mRNA-1:cds;Parent=Msa0448520-mRNA-1 |
| chr3_3 | CDS | 29246277 | 29246372 | 29246277 | ID=Msa0448520-mRNA-1:cds;Parent=Msa0448520-mRNA-1 |
| chr3_3 | CDS | 29246451 | 29246519 | 29246451 | ID=Msa0448520-mRNA-1:cds;Parent=Msa0448520-mRNA-1 |
| chr3_3 | CDS | 29247071 | 29247175 | 29247071 | ID=Msa0448520-mRNA-1:cds;Parent=Msa0448520-mRNA-1 |
| chr3_3 | CDS | 29247272 | 29247328 | 29247272 | ID=Msa0448520-mRNA-1:cds;Parent=Msa0448520-mRNA-1 |
| chr3_3 | CDS | 29247443 | 29247643 | 29247443 | ID=Msa0448520-mRNA-1:cds;Parent=Msa0448520-mRNA-1 |
| chr3_3 | CDS | 29248108 | 29248200 | 29248108 | ID=Msa0448520-mRNA-1:cds;Parent=Msa0448520-mRNA-1 |
| chr3_3 | CDS | 29248286 | 29248385 | 29248286 | ID=Msa0448520-mRNA-1:cds;Parent=Msa0448520-mRNA-1 |
| chr3_3 | CDS | 29248722 | 29248821 | 29248722 | ID=Msa0448520-mRNA-1:cds;Parent=Msa0448520-mRNA-1 |
| chr3_3 | CDS | 29249198 | 29249283 | 29249198 | ID=Msa0448520-mRNA-1:cds;Parent=Msa0448520-mRNA-1 |
| chr3_3 | CDS | 29249577 | 29249668 | 29249577 | ID=Msa0448520-mRNA-1:cds;Parent=Msa0448520-mRNA-1 |
| chr3_3 | three_prime_UTR | 29249669 | 29249913 | 29249669 | ID=Msa0448520-mRNA-1:three_prime_utr;Parent=Msa0448520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
