AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1309100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1309100 MtrunA17_Chr8g0335671 97.867 375 7 1 19 392 114 488 0.0 769
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1309100 AT2G44760.1 65.426 376 108 3 19 390 142 499 5.96e-179 507

Find 119 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGAGTGGACACTCTTTC+AGG 0.181469 8_4:-5544368 Msa1309100:intron
CTAGCAGTCTCAGTGGAATT+TGG 0.196435 8_4:-5544312 Msa1309100:CDS
AAAGACTTAGCTATGGTATT+TGG 0.210694 8_4:-5541860 Msa1309100:three_prime_UTR
AAATCCAAAGGAAGGTTAAT+TGG 0.216672 8_4:-5544147 Msa1309100:CDS
TAATGTAAATTCCGTTATTA+TGG 0.225133 8_4:+5541702 None:intergenic
ATCAGCGCTACTCCGGTCTA+TGG 0.306706 8_4:-5542384 Msa1309100:CDS
GCGACGGCACTGCCTCTATA+CGG 0.317264 8_4:+5544191 None:intergenic
CATTTATGAATTCTATAGTA+TGG 0.319358 8_4:+5543075 None:intergenic
GTACATTTAAAACAGTGATA+TGG 0.322051 8_4:-5542484 Msa1309100:intron
ATACTGAATTGCAATAAGTT+TGG 0.327235 8_4:-5541837 Msa1309100:three_prime_UTR
TAGGTTGATTTGTAATGTTT+TGG 0.331087 8_4:-5541794 Msa1309100:three_prime_UTR
TGCAGGATGGATCTTATTCT+AGG 0.335281 8_4:-5543686 Msa1309100:intron
CATACTATAGAATTCATAAA+TGG 0.344839 8_4:-5543074 Msa1309100:CDS
ATCCACATAATTTATACATT+AGG 0.348324 8_4:+5542036 None:intergenic
TTCTCCAATCACTGCTGAAA+TGG 0.356302 8_4:-5544269 Msa1309100:CDS
TATGACCATTCTATGGCTTC+CGG 0.376585 8_4:-5542229 Msa1309100:CDS
TCACCCAATTAACCTTCCTT+TGG 0.377747 8_4:+5544143 None:intergenic
CTTGTGATGGAAAGAGATTA+TGG 0.389804 8_4:-5542123 Msa1309100:CDS
GGCTCCATTTCAGCAGTGAT+TGG 0.397415 8_4:+5544265 None:intergenic
TTCTTGACACTTATTTCCAT+TGG 0.410247 8_4:+5544244 None:intergenic
ATGACCATTCTATGGCTTCC+GGG 0.414312 8_4:-5542228 Msa1309100:CDS
TGCAGGATATGACCATTCTA+TGG 0.418224 8_4:-5542236 Msa1309100:CDS
AATCAACCTAAGTATCATAC+TGG 0.419432 8_4:+5541807 None:intergenic
GGCATAGCTAAGAATGGTTC+CGG 0.424612 8_4:-5544076 Msa1309100:CDS
CCAAAGTAGTTGGCACTATC+CGG 0.442331 8_4:+5542279 None:intergenic
ATGTTATGTTGATATCAATA+AGG 0.445468 8_4:-5542196 Msa1309100:CDS
AATCCAAAGGAAGGTTAATT+GGG 0.448257 8_4:-5544146 Msa1309100:CDS
TGGTTAAAGGCTGCCACAAA+AGG 0.448879 8_4:-5543109 Msa1309100:CDS
CATGACCCTGTCAACTCTGA+TGG 0.454717 8_4:+5542420 None:intergenic
CCCTGTCAACTCTGATGGAT+TGG 0.456022 8_4:+5542425 None:intergenic
AGAGGCAGTGCCGTCGCATT+CGG 0.457112 8_4:-5544185 Msa1309100:CDS
AAAGAGTATAGCAGTCATAA+AGG 0.459550 8_4:+5544215 None:intergenic
ACTTGTTCAAACTTGAAAGT+TGG 0.459938 8_4:+5543609 None:intergenic
TGTTGCGGCATTTCACCATA+AGG 0.462205 8_4:+5544112 None:intergenic
TTGAGTCCAGTATGATACTT+AGG 0.462292 8_4:-5541813 Msa1309100:three_prime_UTR
ATCTTATTCTAGGGGCCCTA+TGG 0.462658 8_4:-5543676 Msa1309100:CDS
GATGTCATGGGCTGTGAACC+TGG 0.464218 8_4:-5543941 Msa1309100:CDS
CCGGATAGTGCCAACTACTT+TGG 0.466476 8_4:-5542279 Msa1309100:CDS
CACATAATTTATACATTAGG+TGG 0.469527 8_4:+5542039 None:intergenic
TCAGCGCTACTCCGGTCTAT+GGG 0.470374 8_4:-5542383 Msa1309100:CDS
GGAGGAGAGGCTTGACATGC+AGG 0.472665 8_4:-5542253 Msa1309100:CDS
CTATACTCTTTCCCGTATAG+AGG 0.475509 8_4:-5544203 Msa1309100:CDS
CACTGCTGAAATGGAGCCAA+TGG 0.477776 8_4:-5544260 Msa1309100:CDS
CACCTAATGTATAAATTATG+TGG 0.478281 8_4:-5542038 Msa1309100:exon
TGCTGTGTATGAAGAGGAAT+GGG 0.483464 8_4:-5543024 Msa1309100:CDS
TGGGTGACTTTGAATCCTTA+TGG 0.484540 8_4:-5544127 Msa1309100:CDS
AAGTCAAAGGATTCAAATGT+AGG 0.488900 8_4:+5543989 None:intergenic
CTCCTCCTCGCCAAAGTAGT+TGG 0.490934 8_4:+5542269 None:intergenic
GCAGGATGGATCTTATTCTA+GGG 0.494716 8_4:-5543685 Msa1309100:intron
GGAAATCAGAGATGAAGAGA+AGG 0.496039 8_4:-5542071 Msa1309100:CDS
TTGTGATGGAAAGAGATTAT+GGG 0.505191 8_4:-5542122 Msa1309100:CDS
GAAAGAGATTATGGGTTGGA+TGG 0.505505 8_4:-5542114 Msa1309100:CDS
ACCAATCCATCAGAGTTGAC+AGG 0.511162 8_4:-5542426 Msa1309100:CDS
GATCTTAAAGCTCCTATAGC+CGG 0.517766 8_4:-5544052 Msa1309100:CDS
TTCTATGCATCGGAGTTGGC+TGG 0.518081 8_4:-5542167 Msa1309100:CDS
CGACGGCACTGCCTCTATAC+GGG 0.521684 8_4:+5544192 None:intergenic
CATAAAAGTAACCATAATAA+CGG 0.522865 8_4:-5541713 Msa1309100:three_prime_UTR
CTAGCAAATGTGTTCCATGC+TGG 0.522985 8_4:+5544331 None:intergenic
CCATTGTCTTCAACTTGTTG+CGG 0.527673 8_4:+5544097 None:intergenic
ACATAACATGTCACACCTCC+CGG 0.529213 8_4:+5542210 None:intergenic
ACTTCAAAGTAAACAAGGCC+AGG 0.530340 8_4:+5543923 None:intergenic
ATCTTAAAGCTCCTATAGCC+GGG 0.530397 8_4:-5544051 Msa1309100:CDS
GACAATGGCATAGCTAAGAA+TGG 0.533653 8_4:-5544082 Msa1309100:CDS
ACCTCCCGGAAGCCATAGAA+TGG 0.535315 8_4:+5542224 None:intergenic
GAAAACTTAAAGATGTGAGA+TGG 0.535360 8_4:-5542092 Msa1309100:CDS
GAGACTAAAGCGGAAGAAGA+AGG 0.536295 8_4:-5542357 Msa1309100:CDS
CATCAGAGTTGACAGGGTCA+TGG 0.540108 8_4:-5542419 Msa1309100:CDS
GGTATTCTATGCATCGGAGT+TGG 0.543166 8_4:-5542171 Msa1309100:CDS
CTTCAAGAAAAGTGATGTGA+TGG 0.543502 8_4:-5543969 Msa1309100:CDS
GTACAGAAACTCTGAAGAAG+AGG 0.545629 8_4:-5542308 Msa1309100:CDS
TTAGTCTCCTCCCCATAGAC+CGG 0.546679 8_4:+5542372 None:intergenic
GGCCCTATGGATATTTCAGT+GGG 0.551673 8_4:-5543663 Msa1309100:CDS
GTCATCAACACAAGTAGGAC+TGG 0.557404 8_4:+5543001 None:intergenic
GGGCCCTATGGATATTTCAG+TGG 0.561394 8_4:-5543664 Msa1309100:CDS
TTATTGCAAAGACTTAGCTA+TGG 0.563738 8_4:-5541867 Msa1309100:three_prime_UTR
TATGTTGATATCAATAAGGA+TGG 0.564472 8_4:-5542192 Msa1309100:CDS
GTTGGCTGGTACTCTGATGA+AGG 0.567557 8_4:-5542153 Msa1309100:CDS
GCACCCACTGAAATATCCAT+AGG 0.570749 8_4:+5543660 None:intergenic
CTTTGAAATCAGCGCTACTC+CGG 0.574322 8_4:-5542391 Msa1309100:CDS
TCTTCAGAGTTTCTGTACAA+AGG 0.577038 8_4:+5542313 None:intergenic
CATAATCTCTTTCCATCACA+AGG 0.578509 8_4:+5542124 None:intergenic
TATAGGAGCTTTAAGATCAC+CGG 0.582052 8_4:+5544057 None:intergenic
TTGCTGTGTATGAAGAGGAA+TGG 0.582897 8_4:-5543025 Msa1309100:CDS
ACTACTTTGGCGAGGAGGAG+AGG 0.584851 8_4:-5542266 Msa1309100:CDS
CGCTACTCCGGTCTATGGGG+AGG 0.591916 8_4:-5542379 Msa1309100:CDS
CACCCACTGAAATATCCATA+GGG 0.593266 8_4:+5543661 None:intergenic
AGTGGAATTTGGAAAGGTGT+AGG 0.593266 8_4:-5544301 Msa1309100:CDS
TGAAGGAATCAACCTTGTGA+TGG 0.594121 8_4:-5542136 Msa1309100:CDS
CCAATCCATCAGAGTTGACA+GGG 0.594885 8_4:-5542425 Msa1309100:CDS
TACATCTCAAATCCAAAGGA+AGG 0.595112 8_4:-5544155 Msa1309100:CDS
AAGGATGGTATTCTATGCAT+CGG 0.599587 8_4:-5542177 Msa1309100:CDS
TGCCAACTACTTTGGCGAGG+AGG 0.603070 8_4:-5542271 Msa1309100:CDS
AACGTACATCTCAAATCCAA+AGG 0.605463 8_4:-5544159 Msa1309100:CDS
CTCATGTCATCAACACAAGT+AGG 0.612339 8_4:+5542996 None:intergenic
ACTGGTTATGCAATGCACCT+AGG 0.612599 8_4:-5541766 Msa1309100:three_prime_UTR
AACCAGTAATAAAACCAGCA+TGG 0.618754 8_4:-5544345 Msa1309100:CDS
TCTGAAGAAGAGGAGCTCGC+CGG 0.619209 8_4:-5542298 Msa1309100:CDS
CAGGATGGATCTTATTCTAG+GGG 0.620220 8_4:-5543684 Msa1309100:CDS
TCTGTACAAAGGTAGACATA+CGG 0.623226 8_4:+5542324 None:intergenic
AGTCTCAGTGGAATTTGGAA+AGG 0.623926 8_4:-5544307 Msa1309100:CDS
CAGCGCTACTCCGGTCTATG+GGG 0.629844 8_4:-5542382 Msa1309100:CDS
GATGGAAAGAGATTATGGGT+TGG 0.632791 8_4:-5542118 Msa1309100:CDS
AATCAGAGATGAAGAGAAGG+TGG 0.636071 8_4:-5542068 Msa1309100:CDS
TGTGATGGAAGAAGATGTCA+TGG 0.637077 8_4:-5543954 Msa1309100:CDS
ACTATAGAATTCATAAATGG+CGG 0.642562 8_4:-5543071 Msa1309100:CDS
TACTTACTTCAAAGTAAACA+AGG 0.646661 8_4:+5543918 None:intergenic
CCGCAACAAGTTGAAGACAA+TGG 0.648696 8_4:-5544097 Msa1309100:CDS
CTTACAAGCTGCGACCACCT+AGG 0.648983 8_4:+5541749 None:intergenic
GAGAGTTGCTGTGTATGAAG+AGG 0.667649 8_4:-5543030 Msa1309100:CDS
CTATGGGGAGGAGACTAAAG+CGG 0.670545 8_4:-5542367 Msa1309100:CDS
ACATTTGCTAGCAGTCTCAG+TGG 0.670727 8_4:-5544319 Msa1309100:CDS
TAGTGCCAACTACTTTGGCG+AGG 0.679262 8_4:-5542274 Msa1309100:CDS
CTACTTGTGTTGATGACATG+AGG 0.683815 8_4:-5542995 Msa1309100:intron
GTACGTTCATCCGAATGCGA+CGG 0.691972 8_4:+5544175 None:intergenic
ACCATTCTATGGCTTCCGGG+AGG 0.697610 8_4:-5542225 Msa1309100:CDS
GGTTATGCAATGCACCTAGG+TGG 0.707456 8_4:-5541763 Msa1309100:three_prime_UTR
ATTCTATAGTATGGACAATG+CGG 0.711770 8_4:+5543084 None:intergenic
GTGATGGAAGAAGATGTCAT+GGG 0.752957 8_4:-5543953 Msa1309100:CDS
ACAAAGGTAGACATACGGAG+CGG 0.804538 8_4:+5542329 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATCTTATTGTTAATTATT+AGG + chr8_4:5543599-5543618 None:intergenic 10.0%
!! TAGAAATAAAACAAAAAGAA+GGG + chr8_4:5541726-5541745 None:intergenic 15.0%
!! AGTTATTTACAAATGATAAA+AGG + chr8_4:5542477-5542496 None:intergenic 15.0%
!! AACAAATATGTTTATATTAC+CGG + chr8_4:5542701-5542720 None:intergenic 15.0%
!!! AGAAGCAAATTTTAATTTTA+TGG + chr8_4:5542826-5542845 None:intergenic 15.0%
!!! AAAATTAAAATTTGCTTCTA+CGG - chr8_4:5542827-5542846 Msa1309100:intron 15.0%
!!! ATAAAATTTATGTTTTCTGT+TGG - chr8_4:5542911-5542930 Msa1309100:intron 15.0%
!! AATAACTTTATTGAAATCAA+TGG + chr8_4:5543684-5543703 None:intergenic 15.0%
!! AAAAATGATCAAAATGATAA+TGG + chr8_4:5544299-5544318 None:intergenic 15.0%
!! AGAAATAAAACAAAAAGAAG+GGG + chr8_4:5541725-5541744 None:intergenic 20.0%
!! GTAGAAATAAAACAAAAAGA+AGG + chr8_4:5541727-5541746 None:intergenic 20.0%
!! AGCTACAAAATAAATACATT+AGG + chr8_4:5542320-5542339 None:intergenic 20.0%
!! GGTAATATAAACATATTTGT+TGG - chr8_4:5542700-5542719 Msa1309100:intron 20.0%
!!! GTTTTAAAATAACAAATGCA+TGG + chr8_4:5542775-5542794 None:intergenic 20.0%
!!! AATTTTAATTTTATGGCATG+CGG + chr8_4:5542819-5542838 None:intergenic 20.0%
!! CATTTATGAATTCTATAGTA+TGG + chr8_4:5543124-5543143 None:intergenic 20.0%
!! CATACTATAGAATTCATAAA+TGG - chr8_4:5543122-5543141 Msa1309100:intron 20.0%
!! TTTAGCACAAAATGTAAATA+AGG + chr8_4:5543235-5543254 None:intergenic 20.0%
!! AATGAAATGATAAATAGTGA+AGG - chr8_4:5543338-5543357 Msa1309100:intron 20.0%
!! ATGAAATGATAAATAGTGAA+GGG - chr8_4:5543339-5543358 Msa1309100:intron 20.0%
!! ATGTTATGTTGATATCAATA+AGG - chr8_4:5544000-5544019 Msa1309100:CDS 20.0%
!! ATCCACATAATTTATACATT+AGG + chr8_4:5544163-5544182 None:intergenic 20.0%
!! CATAAAAGTAACCATAATAA+CGG - chr8_4:5544483-5544502 Msa1309100:CDS 20.0%
!!! ACGATTTGTTATTTTTTCAC+TGG + chr8_4:5542181-5542200 None:intergenic 25.0%
! TACTTACTTCAAAGTAAACA+AGG + chr8_4:5542281-5542300 None:intergenic 25.0%
! AAAGAGAAAGAAACAATCAA+CGG + chr8_4:5542450-5542469 None:intergenic 25.0%
! AACTACATTTGATAAATTGC+AGG - chr8_4:5542493-5542512 Msa1309100:intron 25.0%
!! ATAAACATATTTGTTGGTGT+TGG - chr8_4:5542706-5542725 Msa1309100:intron 25.0%
!!! ATTTTAATTTTATGGCATGC+GGG + chr8_4:5542818-5542837 None:intergenic 25.0%
! ACTATAGAATTCATAAATGG+CGG - chr8_4:5543125-5543144 Msa1309100:intron 25.0%
! ACATAGTACTAAATGTAGTA+TGG - chr8_4:5543476-5543495 Msa1309100:intron 25.0%
!! AACGTAAATCTTTTCATACT+AGG + chr8_4:5543641-5543660 None:intergenic 25.0%
! AACTTTATTGAAATCAATGG+AGG + chr8_4:5543681-5543700 None:intergenic 25.0%
!! GTACATTTAAAACAGTGATA+TGG - chr8_4:5543712-5543731 Msa1309100:intron 25.0%
!!! GTTCTTTTTCTTTGAGAAAA+TGG + chr8_4:5543752-5543771 None:intergenic 25.0%
! TATGTTGATATCAATAAGGA+TGG - chr8_4:5544004-5544023 Msa1309100:CDS 25.0%
! CACATAATTTATACATTAGG+TGG + chr8_4:5544160-5544179 None:intergenic 25.0%
! CACCTAATGTATAAATTATG+TGG - chr8_4:5544158-5544177 Msa1309100:CDS 25.0%
! ATACTGAATTGCAATAAGTT+TGG - chr8_4:5544359-5544378 Msa1309100:CDS 25.0%
!!! TAGGTTGATTTGTAATGTTT+TGG - chr8_4:5544402-5544421 Msa1309100:intron 25.0%
!!! CGTTATTATGGTTACTTTTA+TGG + chr8_4:5544485-5544504 None:intergenic 25.0%
!! GAACATTATACTGATTTGAG+TGG - chr8_4:5541815-5541834 Msa1309100:three_prime_UTR 30.0%
TTCTTGACACTTATTTCCAT+TGG + chr8_4:5541955-5541974 None:intergenic 30.0%
! AAAGAGTATAGCAGTCATAA+AGG + chr8_4:5541984-5542003 None:intergenic 30.0%
AAATCCAAAGGAAGGTTAAT+TGG - chr8_4:5542049-5542068 Msa1309100:CDS 30.0%
AATCCAAAGGAAGGTTAATT+GGG - chr8_4:5542050-5542069 Msa1309100:CDS 30.0%
AAGTCAAAGGATTCAAATGT+AGG + chr8_4:5542210-5542229 None:intergenic 30.0%
!! ATCACTTTTCTTGAAGTCAA+AGG + chr8_4:5542223-5542242 None:intergenic 30.0%
TTTGTTAGTGACTGAAGAAT+TGG - chr8_4:5542341-5542360 Msa1309100:CDS 30.0%
ACATTTGATAAATTGCAGGA+TGG - chr8_4:5542497-5542516 Msa1309100:intron 30.0%
ACTTGTTCAAACTTGAAAGT+TGG + chr8_4:5542590-5542609 None:intergenic 30.0%
! GTGAGTACTTTTATCTAAAC+TGG + chr8_4:5542890-5542909 None:intergenic 30.0%
! TTTTTCCAGTGTTTGGTTAA+AGG - chr8_4:5543074-5543093 Msa1309100:CDS 30.0%
ATTCTATAGTATGGACAATG+CGG + chr8_4:5543115-5543134 None:intergenic 30.0%
TCTCTGCAATAAATACTTGA+AGG + chr8_4:5543305-5543324 None:intergenic 30.0%
CACATAGCAAGAAAATCAAT+AGG + chr8_4:5543409-5543428 None:intergenic 30.0%
! TTGTGATGGAAAGAGATTAT+GGG - chr8_4:5544074-5544093 Msa1309100:CDS 30.0%
GAAAACTTAAAGATGTGAGA+TGG - chr8_4:5544104-5544123 Msa1309100:CDS 30.0%
TTATTGCAAAGACTTAGCTA+TGG - chr8_4:5544329-5544348 Msa1309100:CDS 30.0%
AAAGACTTAGCTATGGTATT+TGG - chr8_4:5544336-5544355 Msa1309100:CDS 30.0%
AATCAACCTAAGTATCATAC+TGG + chr8_4:5544392-5544411 None:intergenic 30.0%
!!! TGTAATGTTTTGGCATTTAC+TGG - chr8_4:5544412-5544431 Msa1309100:intron 30.0%
! CATTTTCTACAGTTTAGTGC+AGG + chr8_4:5541777-5541796 None:intergenic 35.0%
AACCAGTAATAAAACCAGCA+TGG - chr8_4:5541851-5541870 Msa1309100:three_prime_UTR 35.0%
!!! TTCCATGCTGGTTTTATTAC+TGG + chr8_4:5541856-5541875 None:intergenic 35.0%
AACGTACATCTCAAATCCAA+AGG - chr8_4:5542037-5542056 Msa1309100:exon 35.0%
TACATCTCAAATCCAAAGGA+AGG - chr8_4:5542041-5542060 Msa1309100:exon 35.0%
!! TATAGGAGCTTTAAGATCAC+CGG + chr8_4:5542142-5542161 None:intergenic 35.0%
CTTCAAGAAAAGTGATGTGA+TGG - chr8_4:5542227-5542246 Msa1309100:CDS 35.0%
TGATACTAACTCGTTGATAC+CGG - chr8_4:5542679-5542698 Msa1309100:intron 35.0%
CGGAACAAATGAAAATCGAT+TGG - chr8_4:5542847-5542866 Msa1309100:intron 35.0%
TTGAATTCCTTGTTCAAGCA+TGG - chr8_4:5542958-5542977 Msa1309100:intron 35.0%
ACAAATTCCATGCTTGAACA+AGG + chr8_4:5542968-5542987 None:intergenic 35.0%
! ACTTCTCTTTTTCCAGTGTT+TGG - chr8_4:5543067-5543086 Msa1309100:CDS 35.0%
GTACTAAATGTAGTATGGCA+TGG - chr8_4:5543481-5543500 Msa1309100:intron 35.0%
CTTCATCAATTCCTTTACTG+TGG - chr8_4:5543545-5543564 Msa1309100:intron 35.0%
GAAGGAAAATACCACAGTAA+AGG + chr8_4:5543559-5543578 None:intergenic 35.0%
GAATGACACTAAGATGATGA+AGG + chr8_4:5543577-5543596 None:intergenic 35.0%
TCTGTACAAAGGTAGACATA+CGG + chr8_4:5543875-5543894 None:intergenic 35.0%
TCTTCAGAGTTTCTGTACAA+AGG + chr8_4:5543886-5543905 None:intergenic 35.0%
AAGGATGGTATTCTATGCAT+CGG - chr8_4:5544019-5544038 Msa1309100:CDS 35.0%
CATAATCTCTTTCCATCACA+AGG + chr8_4:5544075-5544094 None:intergenic 35.0%
! CTTGTGATGGAAAGAGATTA+TGG - chr8_4:5544073-5544092 Msa1309100:CDS 35.0%
TTGAGTCCAGTATGATACTT+AGG - chr8_4:5544383-5544402 Msa1309100:intron 35.0%
ATTTGAGTGGACACTCTTTC+AGG - chr8_4:5541828-5541847 Msa1309100:three_prime_UTR 40.0%
AGTCTCAGTGGAATTTGGAA+AGG - chr8_4:5541889-5541908 Msa1309100:three_prime_UTR 40.0%
! AGTGGAATTTGGAAAGGTGT+AGG - chr8_4:5541895-5541914 Msa1309100:three_prime_UTR 40.0%
TTCTCCAATCACTGCTGAAA+TGG - chr8_4:5541927-5541946 Msa1309100:three_prime_UTR 40.0%
CTATACTCTTTCCCGTATAG+AGG - chr8_4:5541993-5542012 Msa1309100:three_prime_UTR 40.0%
TCACCCAATTAACCTTCCTT+TGG + chr8_4:5542056-5542075 None:intergenic 40.0%
TGGGTGACTTTGAATCCTTA+TGG - chr8_4:5542069-5542088 Msa1309100:CDS 40.0%
!! CCATTGTCTTCAACTTGTTG+CGG + chr8_4:5542102-5542121 None:intergenic 40.0%
GACAATGGCATAGCTAAGAA+TGG - chr8_4:5542114-5542133 Msa1309100:CDS 40.0%
GATCTTAAAGCTCCTATAGC+CGG - chr8_4:5542144-5542163 Msa1309100:CDS 40.0%
ATCTTAAAGCTCCTATAGCC+GGG - chr8_4:5542145-5542164 Msa1309100:CDS 40.0%
! TGTGATGGAAGAAGATGTCA+TGG - chr8_4:5542242-5542261 Msa1309100:CDS 40.0%
! GTGATGGAAGAAGATGTCAT+GGG - chr8_4:5542243-5542262 Msa1309100:CDS 40.0%
ACTTCAAAGTAAACAAGGCC+AGG + chr8_4:5542276-5542295 None:intergenic 40.0%
CAATCAACGGTAGTTTATGC+TGG + chr8_4:5542437-5542456 None:intergenic 40.0%
TGCAGGATGGATCTTATTCT+AGG - chr8_4:5542510-5542529 Msa1309100:intron 40.0%
GCAGGATGGATCTTATTCTA+GGG - chr8_4:5542511-5542530 Msa1309100:intron 40.0%
CAGGATGGATCTTATTCTAG+GGG - chr8_4:5542512-5542531 Msa1309100:intron 40.0%
CACCCACTGAAATATCCATA+GGG + chr8_4:5542538-5542557 None:intergenic 40.0%
GTCTGTGTCATCGTTTCATA+GGG + chr8_4:5542658-5542677 None:intergenic 40.0%
AGTCTGTGTCATCGTTTCAT+AGG + chr8_4:5542659-5542678 None:intergenic 40.0%
!! TATTTGTTGGTGTTGGACCT+CGG - chr8_4:5542713-5542732 Msa1309100:intron 40.0%
TTGCTGTGTATGAAGAGGAA+TGG - chr8_4:5543171-5543190 Msa1309100:intron 40.0%
TGCTGTGTATGAAGAGGAAT+GGG - chr8_4:5543172-5543191 Msa1309100:intron 40.0%
CTCATGTCATCAACACAAGT+AGG + chr8_4:5543203-5543222 None:intergenic 40.0%
!! CTACTTGTGTTGATGACATG+AGG - chr8_4:5543201-5543220 Msa1309100:intron 40.0%
TAAGAACATGCACACACCAA+AGG + chr8_4:5543508-5543527 None:intergenic 40.0%
! GTACAGAAACTCTGAAGAAG+AGG - chr8_4:5543888-5543907 Msa1309100:intron 40.0%
TGCAGGATATGACCATTCTA+TGG - chr8_4:5543960-5543979 Msa1309100:CDS 40.0%
TATGACCATTCTATGGCTTC+CGG - chr8_4:5543967-5543986 Msa1309100:CDS 40.0%
TGAAGGAATCAACCTTGTGA+TGG - chr8_4:5544060-5544079 Msa1309100:CDS 40.0%
GATGGAAAGAGATTATGGGT+TGG - chr8_4:5544078-5544097 Msa1309100:CDS 40.0%
!! GAAAGAGATTATGGGTTGGA+TGG - chr8_4:5544082-5544101 Msa1309100:CDS 40.0%
GGAAATCAGAGATGAAGAGA+AGG - chr8_4:5544125-5544144 Msa1309100:CDS 40.0%
AATCAGAGATGAAGAGAAGG+TGG - chr8_4:5544128-5544147 Msa1309100:CDS 40.0%
CTAGCAAATGTGTTCCATGC+TGG + chr8_4:5541868-5541887 None:intergenic 45.0%
! ACATTTGCTAGCAGTCTCAG+TGG - chr8_4:5541877-5541896 Msa1309100:three_prime_UTR 45.0%
CTAGCAGTCTCAGTGGAATT+TGG - chr8_4:5541884-5541903 Msa1309100:three_prime_UTR 45.0%
TGTTGCGGCATTTCACCATA+AGG + chr8_4:5542087-5542106 None:intergenic 45.0%
! CCGCAACAAGTTGAAGACAA+TGG - chr8_4:5542099-5542118 Msa1309100:CDS 45.0%
GGCATAGCTAAGAATGGTTC+CGG - chr8_4:5542120-5542139 Msa1309100:CDS 45.0%
! ATCTTATTCTAGGGGCCCTA+TGG - chr8_4:5542520-5542539 Msa1309100:intron 45.0%
GGCCCTATGGATATTTCAGT+GGG - chr8_4:5542533-5542552 Msa1309100:intron 45.0%
GCACCCACTGAAATATCCAT+AGG + chr8_4:5542539-5542558 None:intergenic 45.0%
GTGTCATCGTTTCATAGGGA+AGG + chr8_4:5542654-5542673 None:intergenic 45.0%
TGGTTAAAGGCTGCCACAAA+AGG - chr8_4:5543087-5543106 Msa1309100:CDS 45.0%
GAGAGTTGCTGTGTATGAAG+AGG - chr8_4:5543166-5543185 Msa1309100:intron 45.0%
GTCATCAACACAAGTAGGAC+TGG + chr8_4:5543198-5543217 None:intergenic 45.0%
TGTAGTATGGCATGGACCTT+TGG - chr8_4:5543489-5543508 Msa1309100:intron 45.0%
ACCAATCCATCAGAGTTGAC+AGG - chr8_4:5543770-5543789 Msa1309100:intron 45.0%
CCAATCCATCAGAGTTGACA+GGG - chr8_4:5543771-5543790 Msa1309100:intron 45.0%
!! CTTTGAAATCAGCGCTACTC+CGG - chr8_4:5543805-5543824 Msa1309100:intron 45.0%
GAGACTAAAGCGGAAGAAGA+AGG - chr8_4:5543839-5543858 Msa1309100:intron 45.0%
ACAAAGGTAGACATACGGAG+CGG + chr8_4:5543870-5543889 None:intergenic 45.0%
CCAAAGTAGTTGGCACTATC+CGG + chr8_4:5543920-5543939 None:intergenic 45.0%
ATGACCATTCTATGGCTTCC+GGG - chr8_4:5543968-5543987 Msa1309100:CDS 45.0%
ACATAACATGTCACACCTCC+CGG + chr8_4:5543989-5544008 None:intergenic 45.0%
GGTATTCTATGCATCGGAGT+TGG - chr8_4:5544025-5544044 Msa1309100:CDS 45.0%
ACTGGTTATGCAATGCACCT+AGG - chr8_4:5544430-5544449 Msa1309100:intron 45.0%
GGCTCCATTTCAGCAGTGAT+TGG + chr8_4:5541934-5541953 None:intergenic 50.0%
CACTGCTGAAATGGAGCCAA+TGG - chr8_4:5541936-5541955 Msa1309100:three_prime_UTR 50.0%
GTACGTTCATCCGAATGCGA+CGG + chr8_4:5542024-5542043 None:intergenic 50.0%
! TTCACTGGATTTTCGCAGCC+CGG + chr8_4:5542166-5542185 None:intergenic 50.0%
GGGCCCTATGGATATTTCAG+TGG - chr8_4:5542532-5542551 Msa1309100:intron 50.0%
GTTGCTACTGACACCACAGA+AGG + chr8_4:5542747-5542766 None:intergenic 50.0%
ATGGCATGCGGGAGAAAACT+GGG + chr8_4:5542807-5542826 None:intergenic 50.0%
TATGGCATGCGGGAGAAAAC+TGG + chr8_4:5542808-5542827 None:intergenic 50.0%
GGCAGCCTTTAACCAAACAC+TGG + chr8_4:5543082-5543101 None:intergenic 50.0%
! GGACAATGCGGATCCTTTTG+TGG + chr8_4:5543103-5543122 None:intergenic 50.0%
! CCCTGTCAACTCTGATGGAT+TGG + chr8_4:5543774-5543793 None:intergenic 50.0%
CATGACCCTGTCAACTCTGA+TGG + chr8_4:5543779-5543798 None:intergenic 50.0%
CATCAGAGTTGACAGGGTCA+TGG - chr8_4:5543777-5543796 Msa1309100:intron 50.0%
TTAGTCTCCTCCCCATAGAC+CGG + chr8_4:5543827-5543846 None:intergenic 50.0%
CTATGGGGAGGAGACTAAAG+CGG - chr8_4:5543829-5543848 Msa1309100:intron 50.0%
CCGGATAGTGCCAACTACTT+TGG - chr8_4:5543917-5543936 Msa1309100:intron 50.0%
TAGTGCCAACTACTTTGGCG+AGG - chr8_4:5543922-5543941 Msa1309100:intron 50.0%
TTCTATGCATCGGAGTTGGC+TGG - chr8_4:5544029-5544048 Msa1309100:CDS 50.0%
GTTGGCTGGTACTCTGATGA+AGG - chr8_4:5544043-5544062 Msa1309100:CDS 50.0%
GGTTATGCAATGCACCTAGG+TGG - chr8_4:5544433-5544452 Msa1309100:intron 50.0%
! GATTTTCGCAGCCCGGCTAT+AGG + chr8_4:5542159-5542178 None:intergenic 55.0%
! GATGTCATGGGCTGTGAACC+TGG - chr8_4:5542255-5542274 Msa1309100:CDS 55.0%
!! TTGGTGTTGGACCTCGGACA+CGG - chr8_4:5542719-5542738 Msa1309100:intron 55.0%
ATGCGGGAGAAAACTGGGGA+GGG + chr8_4:5542802-5542821 None:intergenic 55.0%
TGGCATGCGGGAGAAAACTG+GGG + chr8_4:5542806-5542825 None:intergenic 55.0%
ATCAGCGCTACTCCGGTCTA+TGG - chr8_4:5543812-5543831 Msa1309100:intron 55.0%
TCAGCGCTACTCCGGTCTAT+GGG - chr8_4:5543813-5543832 Msa1309100:intron 55.0%
TCTGAAGAAGAGGAGCTCGC+CGG - chr8_4:5543898-5543917 Msa1309100:intron 55.0%
TGCCAACTACTTTGGCGAGG+AGG - chr8_4:5543925-5543944 Msa1309100:CDS 55.0%
CTCCTCCTCGCCAAAGTAGT+TGG + chr8_4:5543930-5543949 None:intergenic 55.0%
ACTACTTTGGCGAGGAGGAG+AGG - chr8_4:5543930-5543949 Msa1309100:CDS 55.0%
ACCATTCTATGGCTTCCGGG+AGG - chr8_4:5543971-5543990 Msa1309100:CDS 55.0%
ACCTCCCGGAAGCCATAGAA+TGG + chr8_4:5543975-5543994 None:intergenic 55.0%
CTTACAAGCTGCGACCACCT+AGG + chr8_4:5544450-5544469 None:intergenic 55.0%
CGACGGCACTGCCTCTATAC+GGG + chr8_4:5542007-5542026 None:intergenic 60.0%
GCGACGGCACTGCCTCTATA+CGG + chr8_4:5542008-5542027 None:intergenic 60.0%
AGAGGCAGTGCCGTCGCATT+CGG - chr8_4:5542011-5542030 Msa1309100:three_prime_UTR 60.0%
CACAGAAGGATCCGTGTCCG+AGG + chr8_4:5542733-5542752 None:intergenic 60.0%
CTCGGACACGGATCCTTCTG+TGG - chr8_4:5542731-5542750 Msa1309100:intron 60.0%
TGCGGGAGAAAACTGGGGAG+GGG + chr8_4:5542801-5542820 None:intergenic 60.0%
CATGCGGGAGAAAACTGGGG+AGG + chr8_4:5542803-5542822 None:intergenic 60.0%
CAGCGCTACTCCGGTCTATG+GGG - chr8_4:5543814-5543833 Msa1309100:intron 60.0%
GGAGGAGAGGCTTGACATGC+AGG - chr8_4:5543943-5543962 Msa1309100:CDS 60.0%
GCGGGAGAAAACTGGGGAGG+GGG + chr8_4:5542800-5542819 None:intergenic 65.0%
CGCTACTCCGGTCTATGGGG+AGG - chr8_4:5543817-5543836 Msa1309100:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 5541712 5544506 5541712 ID=Msa1309100;Name=Msa1309100
chr8_4 mRNA 5541712 5544506 5541712 ID=Msa1309100-mRNA-1;Parent=Msa1309100;Name=Msa1309100-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.75|0.6|0.8|0.75|0.8|5|335|392
chr8_4 exon 5541712 5542491 5541712 ID=Msa1309100-mRNA-1:exon:1794;Parent=Msa1309100-mRNA-1
chr8_4 exon 5542996 5543135 5542996 ID=Msa1309100-mRNA-1:exon:1793;Parent=Msa1309100-mRNA-1
chr8_4 exon 5543611 5543703 5543611 ID=Msa1309100-mRNA-1:exon:1792;Parent=Msa1309100-mRNA-1
chr8_4 exon 5543925 5544383 5543925 ID=Msa1309100-mRNA-1:exon:1791;Parent=Msa1309100-mRNA-1
chr8_4 exon 5544465 5544506 5544465 ID=Msa1309100-mRNA-1:exon:1790;Parent=Msa1309100-mRNA-1
chr8_4 CDS 5544465 5544506 5544465 ID=Msa1309100-mRNA-1:cds;Parent=Msa1309100-mRNA-1
chr8_4 CDS 5543925 5544383 5543925 ID=Msa1309100-mRNA-1:cds;Parent=Msa1309100-mRNA-1
chr8_4 CDS 5543611 5543703 5543611 ID=Msa1309100-mRNA-1:cds;Parent=Msa1309100-mRNA-1
chr8_4 CDS 5542996 5543135 5542996 ID=Msa1309100-mRNA-1:cds;Parent=Msa1309100-mRNA-1
chr8_4 CDS 5542047 5542491 5542047 ID=Msa1309100-mRNA-1:cds;Parent=Msa1309100-mRNA-1
chr8_4 three_prime_UTR 5541712 5542046 5541712 ID=Msa1309100-mRNA-1:three_prime_utr;Parent=Msa1309100-mRNA-1
Gene Sequence

>Msa1309100

ATGAACTCTGCCCCTTCTTTTTGTTTTATTTCTACTTGTTTTTGGACACTCTTTCAGGAACCAGTAATAAAACCAGCATGGAACACATTTGCTAGCAGTCTCAGTGGAATTTGGAAAGGTGTAGGTGCTGTTTTTTCTCCAATCACTGCTGAAATGGAGCCAATGGAAATAAGTGTCAAGAATGAAAACCTTTATGACTGCTATACTCTTTCCCGTATAGAGGCAGTGCCGTCGCATTCGGATGAACGTACATCTCAAATCCAAAGGAAGGTTAATTGGGTGACTTTGAATCCTTATGGTGAAATGCCGCAACAAGTTGAAGACAATGGCATAGCTAAGAATGGTTCCGGTGATCTTAAAGCTCCTATAGCCGGGCTGCGAAAATCCAGTGAAAAAATAACAAATCGTGTTTTGCCTACATTTGAATCCTTTGACTTCAAGAAAAGTGATGTGATGGAAGAAGATGTCATGGGCTGTGAACCTGGCCTTGTTTACTTTGAAGATGGATCTTATTCTAGGGGCCCTATGGATATTTCAGTGGGTGCAGATGATGATTCAAAGTACTATATCACACCAACTTTCAAGTTTGAACAATGTTTGGTTAAAGGCTGCCACAAAAGGATCCGCATTGTCCATACTATAGAATTCATAAATGGCGGTTCAGAAATACAGATAATGAGAGTTGCTGTGTATGAAGAGGAATGGGCCAGTCCTACTTGTGTTGATGACATGAGTGATATGGACTTTGATTTAAAGCCATTTTCTCAAAGAAAAAGAACCAATCCATCAGAGTTGACAGGGTCATGGAAAGTCTTTGAAATCAGCGCTACTCCGGTCTATGGGGAGGAGACTAAAGCGGAAGAAGAAGGCAATACCGCTCCGTATGTCTACCTTTGTACAGAAACTCTGAAGAAGAGGAGCTCGCCGGATAGTGCCAACTACTTTGGCGAGGAGGAGAGGCTTGACATGCAGGATATGACCATTCTATGGCTTCCGGGAGGTGTGACATGTTATGTTGATATCAATAAGGATGGTATTCTATGCATCGGAGTTGGCTGGTACTCTGATGAAGGAATCAACCTTGTGATGGAAAGAGATTATGGGTTGGATGGAAAACTTAAAGATGTGAGATGGAAATCAGAGATGAAGAGAAGGTGGTCTAATCCACCTAATGTATAA

Protein sequence

>Msa1309100

MNSAPSFCFISTCFWTLFQEPVIKPAWNTFASSLSGIWKGVGAVFSPITAEMEPMEISVKNENLYDCYTLSRIEAVPSHSDERTSQIQRKVNWVTLNPYGEMPQQVEDNGIAKNGSGDLKAPIAGLRKSSEKITNRVLPTFESFDFKKSDVMEEDVMGCEPGLVYFEDGSYSRGPMDISVGADDDSKYYITPTFKFEQCLVKGCHKRIRIVHTIEFINGGSEIQIMRVAVYEEEWASPTCVDDMSDMDFDLKPFSQRKRTNPSELTGSWKVFEISATPVYGEETKAEEEGNTAPYVYLCTETLKKRSSPDSANYFGEEERLDMQDMTILWLPGGVTCYVDINKDGILCIGVGWYSDEGINLVMERDYGLDGKLKDVRWKSEMKRRWSNPPNV*