AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0467080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467080 MtrunA17_Chr3g0120751 97.384 497 13 0 1 497 1 497 0.0 1001
Msa0467080 MtrunA17_Chr6g0459101 28.846 312 195 9 65 354 65 371 1.89e-26 112
Msa0467080 MtrunA17_Chr4g0042701 26.747 501 316 20 1 478 1 473 2.60e-26 111
Msa0467080 MtrunA17_Chr4g0072481 23.381 278 205 7 60 333 139 412 7.22e-18 86.7
Msa0467080 MtrunA17_Chr1g0188461 22.330 309 187 8 69 330 8 310 1.92e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467080 AT3G07670.1 72.581 496 121 4 17 497 9 504 0.0 723
Msa0467080 AT3G07670.2 79.235 366 76 0 132 497 1 366 0.0 597
Msa0467080 AT5G14260.4 28.797 316 198 8 65 358 78 388 7.91e-30 121
Msa0467080 AT5G14260.2 28.797 316 198 8 65 358 78 388 1.95e-29 121
Msa0467080 AT5G14260.3 28.797 316 198 8 65 358 78 388 1.95e-29 121
Msa0467080 AT5G14260.1 28.797 316 198 8 65 358 78 388 1.95e-29 121
Msa0467080 AT1G14030.1 27.123 424 274 19 65 474 47 449 1.06e-24 107
Msa0467080 AT3G55080.1 30.909 275 162 10 81 346 59 314 1.97e-24 106
Msa0467080 AT3G55080.3 30.242 248 146 9 108 346 1 230 1.17e-21 97.1
Msa0467080 AT3G55080.5 30.242 248 146 9 108 346 1 230 1.17e-21 97.1
Msa0467080 AT3G55080.4 29.439 214 127 8 142 346 1 199 2.46e-18 86.7
Msa0467080 AT3G55080.2 29.224 219 126 9 142 346 1 204 3.21e-17 83.6
Msa0467080 AT2G18850.1 26.224 286 168 10 65 329 148 411 1.93e-16 82.4
Msa0467080 AT2G18850.2 26.224 286 168 10 65 329 148 411 1.98e-16 82.4

Find 128 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCATCACTTCATGTTAT+TGG 0.159601 3_3:+68232935 Msa0467080:three_prime_UTR
AGGGAAGAAATCAGGGTATT+TGG 0.193374 3_3:-68231177 None:intergenic
GAAAGGACTAATAATGTTAT+TGG 0.198637 3_3:+68231022 Msa0467080:CDS
AAAGGCTTGAAAATCTTTAA+TGG 0.210155 3_3:+68232813 Msa0467080:CDS
TGGTTGGCCATTGGAGTTAA+TGG 0.222279 3_3:+68232183 Msa0467080:CDS
TGAAAATCTTTAATGGGTTC+TGG 0.228182 3_3:+68232820 Msa0467080:CDS
GTCTTCTGTTGAGTTGTTTC+GGG 0.232871 3_3:-68232594 None:intergenic
TTAGAACTGTTGAAGAAATA+TGG 0.237492 3_3:+68232043 Msa0467080:CDS
CAGTTCTAACTTCTCCTTAT+AGG 0.242836 3_3:-68232029 None:intergenic
TTGAAGAAATATGGATTATC+AGG 0.251255 3_3:+68232052 Msa0467080:CDS
AATGCTTGCTCCTCTATTTC+AGG 0.265403 3_3:-68232384 None:intergenic
AATCTAGCTAAGCTATAGTA+TGG 0.268709 3_3:+68228608 Msa0467080:five_prime_UTR
AACCATACTCACTTCTTTAC+TGG 0.272010 3_3:+68229745 Msa0467080:CDS
TGTGATGTAATTACCTCTTC+AGG 0.272230 3_3:-68231197 None:intergenic
TTCAATACTTCACCAGCTTC+CGG 0.274096 3_3:-68229615 None:intergenic
AAATAAAACTACCTCGAAAA+AGG 0.280033 3_3:+68232350 Msa0467080:CDS
TTGTTGCTTTGAAGAATATT+AGG 0.281922 3_3:+68228966 Msa0467080:CDS
TGAGACTAGCTTCACTTATA+AGG 0.286121 3_3:-68229677 None:intergenic
GTAGGTTCGGTTGCCCTCTA+TGG 0.292815 3_3:+68231490 Msa0467080:intron
CTTGGATTCGTGCCCTCCTT+TGG 0.311412 3_3:-68231962 None:intergenic
ACAACCATGGTTGAAGCTTC+AGG 0.313304 3_3:+68228683 Msa0467080:CDS
AGTCTTCTGTTGAGTTGTTT+CGG 0.314214 3_3:-68232595 None:intergenic
ACACAGGTGTTTATTTCATA+TGG 0.317932 3_3:+68231896 Msa0467080:intron
ACTTGGAAGCTTCACAGATT+AGG 0.329419 3_3:+68230987 Msa0467080:CDS
ACCTCTTCAGGGAAGAAATC+AGG 0.336812 3_3:-68231185 None:intergenic
ATGAGGACTGGTGAATTAAA+AGG 0.337001 3_3:+68232795 Msa0467080:CDS
AAGGAAGAGTTTACAGAATC+AGG 0.341934 3_3:-68229034 None:intergenic
CTTGGAAGCTTCACAGATTA+GGG 0.342197 3_3:+68230988 Msa0467080:CDS
CTCTGCAACCTCATCATTGA+TGG 0.347009 3_3:+68228814 Msa0467080:CDS
AAGGCTTGAAAATCTTTAAT+GGG 0.349585 3_3:+68232814 Msa0467080:CDS
CAGATGGTTCAGTTATATAT+CGG 0.353139 3_3:+68229710 Msa0467080:CDS
TACCTGCTCACCTGGTTGAT+AGG 0.356905 3_3:-68231707 None:intergenic
GAAAGAATGCATTGGTTCCT+TGG 0.361542 3_3:+68231516 Msa0467080:CDS
ATTCATCTTCTCTTGAGAAA+TGG 0.363962 3_3:+68228876 Msa0467080:CDS
AAAATACAACAAGTTCTTAC+AGG 0.366598 3_3:+68232443 Msa0467080:CDS
GGCCAACCAGTAATCCTTAT+AGG 0.372376 3_3:-68232169 None:intergenic
GGTAAGTGGATCGCTAGATT+TGG 0.375776 3_3:+68232561 Msa0467080:intron
GTTGCAAGCAATGGCCAATC+TGG 0.384726 3_3:-68229651 None:intergenic
TCAATACTTCACCAGCTTCC+GGG 0.387137 3_3:-68229614 None:intergenic
GAAATCCGATGAGTCCTATA+AGG 0.391559 3_3:+68232015 Msa0467080:CDS
ATTGATGGAAACTATTCCTT+GGG 0.394039 3_3:+68228829 Msa0467080:CDS
TCAGGAGTGATGACAAGTTC+AGG 0.394221 3_3:-68229016 None:intergenic
ATTCACAAAACAACACATCT+TGG 0.404622 3_3:+68228758 Msa0467080:CDS
TACCAGTAAAGAAGTGAGTA+TGG 0.407176 3_3:-68229747 None:intergenic
GGGGAGCTTCTGTTATCATA+TGG 0.410226 3_3:+68231932 Msa0467080:CDS
AAAATAATGAATGGCCTCAT+TGG 0.414490 3_3:-68232851 None:intergenic
TGAATTGTTTGGTTAAAAGT+AGG 0.419376 3_3:-68228740 None:intergenic
CATTGATGGAAACTATTCCT+TGG 0.421613 3_3:+68228828 Msa0467080:CDS
AAAAGAATTCAGTTCCAGAT+TGG 0.424118 3_3:+68229637 Msa0467080:CDS
TCTCCAGATACAATGATATG+AGG 0.424444 3_3:+68231141 Msa0467080:intron
AAAGAATGCATTGGTTCCTT+GGG 0.460470 3_3:+68231517 Msa0467080:CDS
ACCAACATCAACTTTATCAA+TGG 0.460731 3_3:-68228933 None:intergenic
AATGAAAACAAGAAAAGAAA+AGG 0.460861 3_3:+68233027 Msa0467080:three_prime_UTR
TTTGATTTCAGCAGCAGATA+AGG 0.469294 3_3:+68228632 Msa0467080:five_prime_UTR
CAACCATGGTTGAAGCTTCA+GGG 0.470871 3_3:+68228684 Msa0467080:CDS
GAGTGGAGCTGCCCGGAAGC+TGG 0.475490 3_3:+68229603 Msa0467080:CDS
GAGAAATGGTTGTCTCAGTC+AGG 0.477317 3_3:+68228890 Msa0467080:CDS
AAGGATTACTGGTTGGCCAT+TGG 0.479274 3_3:+68232174 Msa0467080:CDS
AGCAGAACTAGATCGCTACT+TGG 0.487105 3_3:+68230970 Msa0467080:CDS
TCCCTATCAACCAGGTGAGC+AGG 0.488328 3_3:+68231705 Msa0467080:CDS
CTTGAGATATCCTGAAATAG+AGG 0.493097 3_3:+68232374 Msa0467080:CDS
CTTTGAGTTTGAGAAGTTGT+GGG 0.494344 3_3:-68228568 None:intergenic
GATTATGATAAATCGTCAAA+GGG 0.494942 3_3:+68231661 Msa0467080:CDS
GAGTCCTTCAAATGGTCATT+CGG 0.496702 3_3:+68231303 Msa0467080:CDS
TTCCTATAAGGATTACTGGT+TGG 0.499844 3_3:+68232167 Msa0467080:CDS
CCCTGATTTCTTCCCTGAAG+AGG 0.501319 3_3:+68231184 Msa0467080:CDS
ACCTGCTCACCTGGTTGATA+GGG 0.506098 3_3:-68231706 None:intergenic
GGATTATGATAAATCGTCAA+AGG 0.508301 3_3:+68231660 Msa0467080:CDS
CGATATATAACTGAACCATC+TGG 0.510053 3_3:-68229709 None:intergenic
TGCATTCTTTCCATCCATAG+AGG 0.513905 3_3:-68231504 None:intergenic
GTGATGTAATTACCTCTTCA+GGG 0.518826 3_3:-68231196 None:intergenic
GAAGAAGACTGAGGGATATG+AGG 0.527158 3_3:+68232778 Msa0467080:CDS
AATGCCGAATGACCATTTGA+AGG 0.527488 3_3:-68231307 None:intergenic
ATCATATGGATTTGTTCCAA+AGG 0.534845 3_3:+68231946 Msa0467080:CDS
TTTATGATTACCTGCTCACC+TGG 0.538716 3_3:-68231715 None:intergenic
AGGAATAAGAGTGGTGGTGT+TGG 0.543116 3_3:-68228720 None:intergenic
CCTCTTCAGGGAAGAAATCA+GGG 0.543445 3_3:-68231184 None:intergenic
AGATGTTTCCAAAGCAAGCA+AGG 0.544329 3_3:-68232878 None:intergenic
TTGATCGATCCACAGGTAAG+TGG 0.549849 3_3:+68232547 Msa0467080:intron
GTTCGGTTGCCCTCTATGGA+TGG 0.550112 3_3:+68231494 Msa0467080:CDS
AACAAGAAAAGAAAAGGCCG+TGG 0.551947 3_3:+68233033 Msa0467080:three_prime_UTR
ACTTTGAGTTTGAGAAGTTG+TGG 0.556294 3_3:-68228569 None:intergenic
GTTTAGATGCAATAATTCCA+CGG 0.556900 3_3:-68233050 None:intergenic
AAAGTTGATGTTGGTGAGAG+AGG 0.560244 3_3:+68228941 Msa0467080:CDS
TTATTAGGAGTGGAGCTGCC+CGG 0.560448 3_3:+68229596 Msa0467080:intron
GACAACTCAACTGAATCACT+TGG 0.561180 3_3:-68231980 None:intergenic
TTCTGGAATCGTTTCCAATG+AGG 0.561253 3_3:+68232837 Msa0467080:CDS
CAAGGGTGGAAAATAATGAA+TGG 0.566267 3_3:-68232860 None:intergenic
TCCATTGATAAAGTTGATGT+TGG 0.569634 3_3:+68228932 Msa0467080:CDS
TCAACATCGAGTCCTTCAAA+TGG 0.570581 3_3:+68231295 Msa0467080:CDS
TATGGATTTGTTCCAAAGGA+GGG 0.574263 3_3:+68231950 Msa0467080:CDS
TCAATGGACATCTTCTGAGA+AGG 0.574688 3_3:-68228917 None:intergenic
GCATAAGCCATTAACTCCAA+TGG 0.580262 3_3:-68232190 None:intergenic
ATAAGGTAAGTTGCAAGCAA+TGG 0.582668 3_3:-68229660 None:intergenic
CTCCAGATACAATGATATGA+GGG 0.583933 3_3:+68231142 Msa0467080:intron
GTCTCATGAAATCTTCCAGA+TGG 0.584762 3_3:+68229694 Msa0467080:CDS
AGACTGAGGGATATGAGGAC+TGG 0.586138 3_3:+68232783 Msa0467080:CDS
GTTTCCAAAGCAAGCAAGGG+TGG 0.586701 3_3:-68232874 None:intergenic
ATATGGATTTGTTCCAAAGG+AGG 0.589672 3_3:+68231949 Msa0467080:CDS
GCATTCTTTCCATCCATAGA+GGG 0.590910 3_3:-68231503 None:intergenic
CTTCTCCTTATAGGACTCAT+CGG 0.591036 3_3:-68232020 None:intergenic
ATCTAGCTAAGCTATAGTAT+GGG 0.592792 3_3:+68228609 Msa0467080:five_prime_UTR
GTTAAAAGTAGGAATAAGAG+TGG 0.593264 3_3:-68228729 None:intergenic
TGAAGAAATATGGATTATCA+GGG 0.595613 3_3:+68232053 Msa0467080:CDS
AATAGTTTCCATCAATGATG+AGG 0.598821 3_3:-68228822 None:intergenic
CTTTCTAAAGCAGCTAGCCG+TGG 0.603623 3_3:+68232618 Msa0467080:CDS
GCTTTGAAGAATATTAGGAA+AGG 0.605109 3_3:+68228971 Msa0467080:CDS
TTAGGGAGAGAGCAATTGAA+AGG 0.606641 3_3:+68231005 Msa0467080:CDS
CATCCCTGAAGCTTCAACCA+TGG 0.608019 3_3:-68228687 None:intergenic
TATGGATGGAAAGAATGCAT+TGG 0.613912 3_3:+68231508 Msa0467080:CDS
GTTAGTCCTTCAAGCATGAG+AGG 0.621487 3_3:+68232223 Msa0467080:CDS
CATGAGAGGAAAATTTGAAG+AGG 0.626190 3_3:+68232237 Msa0467080:CDS
TGATTCATCATGTCTGCCCA+AGG 0.634383 3_3:-68231533 None:intergenic
CATGATGAATCATAGTTGTG+AGG 0.635915 3_3:+68231544 Msa0467080:CDS
GATATTGCGAAGAAGACTGA+GGG 0.640825 3_3:+68232770 Msa0467080:intron
ACTTAGTAACATGACAACCA+TGG 0.641315 3_3:+68228670 Msa0467080:exon
ACTTGTGTAATAGCGAGCGC+AGG 0.651320 3_3:+68232641 Msa0467080:CDS
AGAAGTGAGTATGGTTGACG+AGG 0.657046 3_3:-68229738 None:intergenic
GAATCATTCTCACATCCCCA+AGG 0.662703 3_3:-68228845 None:intergenic
ACGGATCGTCCCTATCAACC+AGG 0.664539 3_3:+68231697 Msa0467080:CDS
AAAAGTAGGAATAAGAGTGG+TGG 0.668503 3_3:-68228726 None:intergenic
GATGTTTCCAAAGCAAGCAA+GGG 0.669290 3_3:-68232877 None:intergenic
TCTTCTGTTGAGTTGTTTCG+GGG 0.672386 3_3:-68232593 None:intergenic
AGATATTGCGAAGAAGACTG+AGG 0.673237 3_3:+68232769 Msa0467080:intron
TTGATGGAAACTATTCCTTG+GGG 0.675898 3_3:+68228830 Msa0467080:CDS
AAAGGGAATTGTCTTTACGA+CGG 0.683033 3_3:+68231678 Msa0467080:CDS
GGAGTGATGACAAGTTCAGG+AGG 0.684706 3_3:-68229013 None:intergenic
CTCGCTATTACACAAGTCCA+CGG 0.710247 3_3:-68232635 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGAATTAATAAACTAAAA+TGG - chr3_3:68229388-68229407 None:intergenic 10.0%
!! TATTGAAATTATAGTTTAAA+AGG - chr3_3:68230148-68230167 None:intergenic 10.0%
!!! ATTATTTTGTGTGTTTATAT+TGG + chr3_3:68229796-68229815 Msa0467080:intron 15.0%
!!! TTATTTTGTGTGTTTATATT+GGG + chr3_3:68229797-68229816 Msa0467080:intron 15.0%
!! ATTTCAATAGAAAAAACTAA+AGG + chr3_3:68230159-68230178 Msa0467080:intron 15.0%
!! ACGTAAATAATAGTTATAAA+CGG - chr3_3:68230432-68230451 None:intergenic 15.0%
!! TCTAGAAAATTATTAAGATT+TGG + chr3_3:68230748-68230767 Msa0467080:intron 15.0%
!! ATAACATTTCTCATAAAAAA+AGG + chr3_3:68230896-68230915 Msa0467080:intron 15.0%
!! TAACATTTCTCATAAAAAAA+GGG + chr3_3:68230897-68230916 Msa0467080:intron 15.0%
!!! TCTAATATATTTTTTGTCAT+TGG + chr3_3:68231618-68231637 Msa0467080:intron 15.0%
!!! ATTTGTTAAATTAGATACAT+AGG + chr3_3:68231748-68231767 Msa0467080:intron 15.0%
!! TATAATAACTATGAAAACTT+AGG - chr3_3:68232085-68232104 None:intergenic 15.0%
!!! TATTTAATTTCTACTTACAA+AGG + chr3_3:68232705-68232724 Msa0467080:intron 15.0%
!!! ACTTGTTTGATTTTATCTAT+TGG + chr3_3:68229158-68229177 Msa0467080:intron 20.0%
!! GAATTAATAAACTAAAATGG+TGG - chr3_3:68229385-68229404 None:intergenic 20.0%
!! TTATATAAGTATTATGCTGT+CGG + chr3_3:68229448-68229467 Msa0467080:intron 20.0%
!!! TATTTTACAATAATTCACCA+GGG + chr3_3:68229922-68229941 Msa0467080:intron 20.0%
!!! TTATACTTGCTATTTTCTTT+TGG + chr3_3:68230186-68230205 Msa0467080:intron 20.0%
!!! TTTTATTTTATTTTGACCCA+CGG - chr3_3:68230709-68230728 None:intergenic 20.0%
!! ATATATTAGGTACAAATGAT+CGG - chr3_3:68231058-68231077 None:intergenic 20.0%
!! GAACATATAATTCATGATAT+TGG + chr3_3:68231461-68231480 Msa0467080:intron 20.0%
!!! ATATTTTTTGTCATTGGATT+AGG + chr3_3:68231624-68231643 Msa0467080:intron 20.0%
!! TCATATGGAAAAAAATCAAA+CGG + chr3_3:68231911-68231930 Msa0467080:CDS 20.0%
!! TAATGATTTCAAAAGCAATT+TGG + chr3_3:68232482-68232501 Msa0467080:intron 20.0%
!!! TTATTGGTTTTTGTTTTTGA+TGG + chr3_3:68232951-68232970 Msa0467080:three_prime_UTR 20.0%
!!! TTTTTGTTTTTGATGGAAAT+AGG + chr3_3:68232958-68232977 Msa0467080:three_prime_UTR 20.0%
!! AATGAAAACAAGAAAAGAAA+AGG + chr3_3:68233027-68233046 Msa0467080:three_prime_UTR 20.0%
! TGAATTGTTTGGTTAAAAGT+AGG - chr3_3:68228743-68228762 None:intergenic 25.0%
!!! TTGTTGCTTTGAAGAATATT+AGG + chr3_3:68228966-68228985 Msa0467080:CDS 25.0%
! ACAAATAAAGAGAAGAAGAA+AGG - chr3_3:68229056-68229075 None:intergenic 25.0%
!! TTTCTTCTTCTCTTTATTTG+TGG + chr3_3:68229055-68229074 Msa0467080:intron 25.0%
! TGAGACTATGAGATAATTTA+TGG + chr3_3:68229193-68229212 Msa0467080:intron 25.0%
! TAATTTATGGAAACAGCTTA+TGG + chr3_3:68229206-68229225 Msa0467080:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + chr3_3:68229332-68229351 Msa0467080:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG + chr3_3:68229333-68229352 Msa0467080:intron 25.0%
!!! ATTAAGCATCAATTTTAGCA+TGG - chr3_3:68229506-68229525 None:intergenic 25.0%
! ATATCCAAATCAAGTTTAGA+AGG - chr3_3:68229535-68229554 None:intergenic 25.0%
!!! TGGTGTTTATGATTTTGTTT+GGG + chr3_3:68229564-68229583 Msa0467080:intron 25.0%
!! CTATTTTACAATAATTCACC+AGG + chr3_3:68229921-68229940 Msa0467080:intron 25.0%
! TCAATAGAAAAAACTAAAGG+TGG + chr3_3:68230162-68230181 Msa0467080:intron 25.0%
! ATTAAGAGGAAGAAATTAGT+GGG - chr3_3:68230289-68230308 None:intergenic 25.0%
! AATTAAGAGGAAGAAATTAG+TGG - chr3_3:68230290-68230309 None:intergenic 25.0%
! TCAAGCAAAAAAATCTTCAA+TGG + chr3_3:68230316-68230335 Msa0467080:intron 25.0%
! AATCAACAACTATTTGACAA+CGG + chr3_3:68230395-68230414 Msa0467080:intron 25.0%
!!! TTTATTTTATTTTGACCCAC+GGG - chr3_3:68230708-68230727 None:intergenic 25.0%
! AAGATGAAATAGTACCAATA+CGG + chr3_3:68230834-68230853 Msa0467080:intron 25.0%
! ATGTTATGTTGACAACTTTA+TGG - chr3_3:68230883-68230902 None:intergenic 25.0%
! ATGAAAGAAATGAACTGTAT+AGG - chr3_3:68230939-68230958 None:intergenic 25.0%
! GAAAGGACTAATAATGTTAT+TGG + chr3_3:68231022-68231041 Msa0467080:CDS 25.0%
! AATAATGTTATTGGAACGTA+TGG + chr3_3:68231031-68231050 Msa0467080:intron 25.0%
! TGCTAGTTATTGAAAAACAT+GGG - chr3_3:68231107-68231126 None:intergenic 25.0%
! TTGCTAGTTATTGAAAAACA+TGG - chr3_3:68231108-68231127 None:intergenic 25.0%
!! ATCTGAATCTGTTATTTGTA+TGG + chr3_3:68231261-68231280 Msa0467080:intron 25.0%
! GATTATGATAAATCGTCAAA+GGG + chr3_3:68231661-68231680 Msa0467080:CDS 25.0%
! AATTTGCATTTCATTTACCA+AGG - chr3_3:68231790-68231809 None:intergenic 25.0%
! TTTCTTGTATCAAATTACAC+AGG + chr3_3:68231880-68231899 Msa0467080:intron 25.0%
! CATATGGAAAAAAATCAAAC+GGG + chr3_3:68231912-68231931 Msa0467080:CDS 25.0%
! ATATGGAAAAAAATCAAACG+GGG + chr3_3:68231913-68231932 Msa0467080:CDS 25.0%
! TTAGAACTGTTGAAGAAATA+TGG + chr3_3:68232043-68232062 Msa0467080:CDS 25.0%
!! TTGAAGAAATATGGATTATC+AGG + chr3_3:68232052-68232071 Msa0467080:CDS 25.0%
!! TGAAGAAATATGGATTATCA+GGG + chr3_3:68232053-68232072 Msa0467080:CDS 25.0%
! GTAACAAGTTTAATCATGAA+AGG - chr3_3:68232108-68232127 None:intergenic 25.0%
! AAATAAAACTACCTCGAAAA+AGG + chr3_3:68232350-68232369 Msa0467080:CDS 25.0%
! AAAATACAACAAGTTCTTAC+AGG + chr3_3:68232443-68232462 Msa0467080:CDS 25.0%
! AAAGGCTTGAAAATCTTTAA+TGG + chr3_3:68232813-68232832 Msa0467080:CDS 25.0%
! AAGGCTTGAAAATCTTTAAT+GGG + chr3_3:68232814-68232833 Msa0467080:CDS 25.0%
!!! AATTTAGCACTATTTTGAAG+AGG + chr3_3:68233130-68233149 Msa0467080:three_prime_UTR 25.0%
AATCTAGCTAAGCTATAGTA+TGG + chr3_3:68228608-68228627 Msa0467080:five_prime_UTR 30.0%
ATCTAGCTAAGCTATAGTAT+GGG + chr3_3:68228609-68228628 Msa0467080:five_prime_UTR 30.0%
GTTAAAAGTAGGAATAAGAG+TGG - chr3_3:68228732-68228751 None:intergenic 30.0%
!!! GTGTTGTTTTGTGAATTGTT+TGG - chr3_3:68228754-68228773 None:intergenic 30.0%
ATTCACAAAACAACACATCT+TGG + chr3_3:68228758-68228777 Msa0467080:CDS 30.0%
AATAGTTTCCATCAATGATG+AGG - chr3_3:68228825-68228844 None:intergenic 30.0%
ATTGATGGAAACTATTCCTT+GGG + chr3_3:68228829-68228848 Msa0467080:CDS 30.0%
ATTCATCTTCTCTTGAGAAA+TGG + chr3_3:68228876-68228895 Msa0467080:CDS 30.0%
!! TCCATTGATAAAGTTGATGT+TGG + chr3_3:68228932-68228951 Msa0467080:CDS 30.0%
ACCAACATCAACTTTATCAA+TGG - chr3_3:68228936-68228955 None:intergenic 30.0%
!! GCTTTGAAGAATATTAGGAA+AGG + chr3_3:68228971-68228990 Msa0467080:CDS 30.0%
!! ATAGCTTTGAAAACAGCTTA+TGG + chr3_3:68229131-68229150 Msa0467080:intron 30.0%
CTTATACATGCTTATGCTAT+AGG + chr3_3:68229303-68229322 Msa0467080:intron 30.0%
AATTTCTGAACAAAGCTTCT+TGG - chr3_3:68229411-68229430 None:intergenic 30.0%
TCAACCTTCTAAACTTGATT+TGG + chr3_3:68229528-68229547 Msa0467080:intron 30.0%
! CTGGTGTTTATGATTTTGTT+TGG + chr3_3:68229563-68229582 Msa0467080:intron 30.0%
!! GGTGTTTATGATTTTGTTTG+GGG + chr3_3:68229565-68229584 Msa0467080:intron 30.0%
!! TGATTTTGTTTGGGGTATTT+TGG + chr3_3:68229573-68229592 Msa0467080:intron 30.0%
!!! TTTGGGGTATTTTGGTTATT+AGG + chr3_3:68229581-68229600 Msa0467080:intron 30.0%
AAAAGAATTCAGTTCCAGAT+TGG + chr3_3:68229637-68229656 Msa0467080:CDS 30.0%
CAGATGGTTCAGTTATATAT+CGG + chr3_3:68229710-68229729 Msa0467080:CDS 30.0%
GTGTTTATATTGGGAAGAAT+TGG + chr3_3:68229806-68229825 Msa0467080:intron 30.0%
!!! ATTCACCAGGGTTTTAAAAA+AGG + chr3_3:68229934-68229953 Msa0467080:intron 30.0%
AATATAAGCCCATCCTAAAA+TGG + chr3_3:68230078-68230097 Msa0467080:intron 30.0%
!!! CTTTTGTACCATTTTAGGAT+GGG - chr3_3:68230089-68230108 None:intergenic 30.0%
!! ACTTTTGTACCATTTTAGGA+TGG - chr3_3:68230090-68230109 None:intergenic 30.0%
!! CTTCACTTTTGTACCATTTT+AGG - chr3_3:68230094-68230113 None:intergenic 30.0%
TGCTTGAAACTGAAATTAAG+AGG - chr3_3:68230303-68230322 None:intergenic 30.0%
!! AAACTTGTTCTTTTCTATCC+AGG - chr3_3:68230518-68230537 None:intergenic 30.0%
CGACAAACCTATCAAAATAA+GGG + chr3_3:68230572-68230591 Msa0467080:intron 30.0%
CAGTTCATTTCTTTCATTTC+AGG + chr3_3:68230942-68230961 Msa0467080:intron 30.0%
! GAAAGCACAGTAGATATATT+AGG - chr3_3:68231071-68231090 None:intergenic 30.0%
ATTGTATCTGGAGAACAAAT+GGG - chr3_3:68231135-68231154 None:intergenic 30.0%
GTAATTACATCACATTGAAC+AGG + chr3_3:68231206-68231225 Msa0467080:intron 30.0%
TGTTTCATATTTGAGAGAAG+TGG + chr3_3:68231428-68231447 Msa0467080:intron 30.0%
!!! AACTTGCTAGGGATTTTATT+TGG - chr3_3:68231580-68231599 None:intergenic 30.0%
!! TATTAGAGTTCAACTTGTTG+AGG - chr3_3:68231605-68231624 None:intergenic 30.0%
!!! TTTTTTGTCATTGGATTAGG+TGG + chr3_3:68231627-68231646 Msa0467080:intron 30.0%
GGATTATGATAAATCGTCAA+AGG + chr3_3:68231660-68231679 Msa0467080:CDS 30.0%
!! CTTTAGAGTCATAAACACTT+TGG - chr3_3:68231825-68231844 None:intergenic 30.0%
AAGAAATCAATTGCAGTTTG+TGG - chr3_3:68231860-68231879 None:intergenic 30.0%
ACACAGGTGTTTATTTCATA+TGG + chr3_3:68231896-68231915 Msa0467080:intron 30.0%
! ATCATATGGATTTGTTCCAA+AGG + chr3_3:68231946-68231965 Msa0467080:CDS 30.0%
! TGTTTTCCTATAAGGATTAC+TGG + chr3_3:68232163-68232182 Msa0467080:CDS 30.0%
GAATTCACAAAGATAGTAAG+TGG - chr3_3:68232267-68232286 None:intergenic 30.0%
TAACCAAATGTGTGATTCTT+TGG + chr3_3:68232306-68232325 Msa0467080:intron 30.0%
TCAAATGGAAACAAACAACT+AGG - chr3_3:68232531-68232550 None:intergenic 30.0%
!! TGAAAATCTTTAATGGGTTC+TGG + chr3_3:68232820-68232839 Msa0467080:CDS 30.0%
AAAATAATGAATGGCCTCAT+TGG - chr3_3:68232854-68232873 None:intergenic 30.0%
AGTTCATCACTTCATGTTAT+TGG + chr3_3:68232935-68232954 Msa0467080:three_prime_UTR 30.0%
GTTTAGATGCAATAATTCCA+CGG - chr3_3:68233053-68233072 None:intergenic 30.0%
! CTTTGAGTTTGAGAAGTTGT+GGG - chr3_3:68228571-68228590 None:intergenic 35.0%
! ACTTTGAGTTTGAGAAGTTG+TGG - chr3_3:68228572-68228591 None:intergenic 35.0%
! TTTGATTTCAGCAGCAGATA+AGG + chr3_3:68228632-68228651 Msa0467080:five_prime_UTR 35.0%
ACTTAGTAACATGACAACCA+TGG + chr3_3:68228670-68228689 Msa0467080:exon 35.0%
AAAAGTAGGAATAAGAGTGG+TGG - chr3_3:68228729-68228748 None:intergenic 35.0%
CATTGATGGAAACTATTCCT+TGG + chr3_3:68228828-68228847 Msa0467080:CDS 35.0%
TTGATGGAAACTATTCCTTG+GGG + chr3_3:68228830-68228849 Msa0467080:CDS 35.0%
AAGGAAGAGTTTACAGAATC+AGG - chr3_3:68229037-68229056 None:intergenic 35.0%
CTATCTATGCACTATGCTTA+TGG - chr3_3:68229237-68229256 None:intergenic 35.0%
GATTTGGATATCTTGTGTTC+TGG + chr3_3:68229544-68229563 Msa0467080:intron 35.0%
!!! GGTATTTTGGTTATTAGGAG+TGG + chr3_3:68229586-68229605 Msa0467080:intron 35.0%
ATAAGGTAAGTTGCAAGCAA+TGG - chr3_3:68229663-68229682 None:intergenic 35.0%
!! TGAGACTAGCTTCACTTATA+AGG - chr3_3:68229680-68229699 None:intergenic 35.0%
CGATATATAACTGAACCATC+TGG - chr3_3:68229712-68229731 None:intergenic 35.0%
AACCATACTCACTTCTTTAC+TGG + chr3_3:68229745-68229764 Msa0467080:CDS 35.0%
TACCAGTAAAGAAGTGAGTA+TGG - chr3_3:68229750-68229769 None:intergenic 35.0%
! AAATGCTTTGTTACCTTGCT+AGG + chr3_3:68229871-68229890 Msa0467080:intron 35.0%
! AATGCTTTGTTACCTTGCTA+GGG + chr3_3:68229872-68229891 Msa0467080:intron 35.0%
!!! TCGATCCTTTTTTAAAACCC+TGG - chr3_3:68229942-68229961 None:intergenic 35.0%
AAAAGGATCGAAGTAACAGT+TGG + chr3_3:68229951-68229970 Msa0467080:intron 35.0%
TCTTGTACGGATATAGATGA+AGG - chr3_3:68230225-68230244 None:intergenic 35.0%
AGCGACAAACTTGTGAAAAT+AGG + chr3_3:68230541-68230560 Msa0467080:intron 35.0%
GCGACAAACTTGTGAAAATA+GGG + chr3_3:68230542-68230561 Msa0467080:intron 35.0%
GCGACAAACCTATCAAAATA+AGG + chr3_3:68230571-68230590 Msa0467080:intron 35.0%
ACCTATCAAAATAAGGGTTC+CGG + chr3_3:68230578-68230597 Msa0467080:intron 35.0%
!! GATTTTCTCTCAATTTCTGG+TGG - chr3_3:68230607-68230626 None:intergenic 35.0%
! CGAGATTTTCTCTCAATTTC+TGG - chr3_3:68230610-68230629 None:intergenic 35.0%
! AATGAAAAAGTGTGCCTCTT+AGG + chr3_3:68230643-68230662 Msa0467080:intron 35.0%
TGAAAGAAATAACAAACCCG+TGG + chr3_3:68230689-68230708 Msa0467080:intron 35.0%
GAAAGAAATAACAAACCCGT+GGG + chr3_3:68230690-68230709 Msa0467080:intron 35.0%
!! ATTAGCTGTTTCTCTGATGT+AGG - chr3_3:68230811-68230830 None:intergenic 35.0%
ACCAATACGGTATCTTTAGA+CGG + chr3_3:68230847-68230866 Msa0467080:intron 35.0%
CATTGTATCTGGAGAACAAA+TGG - chr3_3:68231136-68231155 None:intergenic 35.0%
TCTCCAGATACAATGATATG+AGG + chr3_3:68231141-68231160 Msa0467080:intron 35.0%
CTCCAGATACAATGATATGA+GGG + chr3_3:68231142-68231161 Msa0467080:intron 35.0%
AACCCTCATATCATTGTATC+TGG - chr3_3:68231147-68231166 None:intergenic 35.0%
GTGATGTAATTACCTCTTCA+GGG - chr3_3:68231199-68231218 None:intergenic 35.0%
TGTGATGTAATTACCTCTTC+AGG - chr3_3:68231200-68231219 None:intergenic 35.0%
! CTGTTATTTGTATGGCTTTC+AGG + chr3_3:68231269-68231288 Msa0467080:intron 35.0%
TATGGATGGAAAGAATGCAT+TGG + chr3_3:68231508-68231527 Msa0467080:CDS 35.0%
!! AAAGAATGCATTGGTTCCTT+GGG + chr3_3:68231517-68231536 Msa0467080:CDS 35.0%
CATGATGAATCATAGTTGTG+AGG + chr3_3:68231544-68231563 Msa0467080:CDS 35.0%
ATGAATCATAGTTGTGAGGT+AGG + chr3_3:68231548-68231567 Msa0467080:intron 35.0%
TGAATCATAGTTGTGAGGTA+GGG + chr3_3:68231549-68231568 Msa0467080:intron 35.0%
!! TTGTTGAGGAAAACTTGCTA+GGG - chr3_3:68231591-68231610 None:intergenic 35.0%
AAAGGGAATTGTCTTTACGA+CGG + chr3_3:68231678-68231697 Msa0467080:CDS 35.0%
CAGGTAATCATAAACTCAGA+TGG + chr3_3:68231724-68231743 Msa0467080:intron 35.0%
GATAAGACAGTTAAGTACCT+TGG + chr3_3:68231770-68231789 Msa0467080:intron 35.0%
! ATATGGATTTGTTCCAAAGG+AGG + chr3_3:68231949-68231968 Msa0467080:CDS 35.0%
! TATGGATTTGTTCCAAAGGA+GGG + chr3_3:68231950-68231969 Msa0467080:CDS 35.0%
! CAGTTCTAACTTCTCCTTAT+AGG - chr3_3:68232032-68232051 None:intergenic 35.0%
TATAGGAAAACACTGAGATC+TGG - chr3_3:68232155-68232174 None:intergenic 35.0%
! GATCTCAGTGTTTTCCTATA+AGG + chr3_3:68232155-68232174 Msa0467080:intron 35.0%
TTCCTATAAGGATTACTGGT+TGG + chr3_3:68232167-68232186 Msa0467080:CDS 35.0%
! AATTTTCCTCTCATGCTTGA+AGG - chr3_3:68232232-68232251 None:intergenic 35.0%
CATGAGAGGAAAATTTGAAG+AGG + chr3_3:68232237-68232256 Msa0467080:CDS 35.0%
TGTCCAAAGAATCACACATT+TGG - chr3_3:68232312-68232331 None:intergenic 35.0%
!!! CGAGGTAGTTTTATTTGATG+CGG - chr3_3:68232346-68232365 None:intergenic 35.0%
!! ATATCTCAAGTCCTTTTTCG+AGG - chr3_3:68232364-68232383 None:intergenic 35.0%
CTTGAGATATCCTGAAATAG+AGG + chr3_3:68232374-68232393 Msa0467080:CDS 35.0%
! AGTCTTCTGTTGAGTTGTTT+CGG - chr3_3:68232598-68232617 None:intergenic 35.0%
! ATGAGGACTGGTGAATTAAA+AGG + chr3_3:68232795-68232814 Msa0467080:CDS 35.0%
CAAGGGTGGAAAATAATGAA+TGG - chr3_3:68232863-68232882 None:intergenic 35.0%
! TCAATGGACATCTTCTGAGA+AGG - chr3_3:68228920-68228939 None:intergenic 40.0%
!! AAAGTTGATGTTGGTGAGAG+AGG + chr3_3:68228941-68228960 Msa0467080:CDS 40.0%
TCGTCACATAACTGTCTATG+AGG - chr3_3:68229359-68229378 None:intergenic 40.0%
TTCAATACTTCACCAGCTTC+CGG - chr3_3:68229618-68229637 None:intergenic 40.0%
GTCTCATGAAATCTTCCAGA+TGG + chr3_3:68229694-68229713 Msa0467080:CDS 40.0%
CTGCATTCTCTGCAATATCA+AGG - chr3_3:68229989-68230008 None:intergenic 40.0%
CATCTATATCCGTACAAGAG+AGG + chr3_3:68230226-68230245 Msa0467080:intron 40.0%
AGAGAAACACCTCTCTTGTA+CGG - chr3_3:68230238-68230257 None:intergenic 40.0%
TTTACGTGACTATGAGAGAG+AGG + chr3_3:68230445-68230464 Msa0467080:intron 40.0%
TTACGTGACTATGAGAGAGA+GGG + chr3_3:68230446-68230465 Msa0467080:intron 40.0%
!!! TCCGGAACCCTTATTTTGAT+AGG - chr3_3:68230582-68230601 None:intergenic 40.0%
!! TCTCAATTTCTGGTGGATTC+CGG - chr3_3:68230600-68230619 None:intergenic 40.0%
CAGAACTTATGTAGCCTAAG+AGG - chr3_3:68230660-68230679 None:intergenic 40.0%
ACCGTCTAAAGATACCGTAT+TGG - chr3_3:68230851-68230870 None:intergenic 40.0%
ACTTGGAAGCTTCACAGATT+AGG + chr3_3:68230987-68231006 Msa0467080:CDS 40.0%
CTTGGAAGCTTCACAGATTA+GGG + chr3_3:68230988-68231007 Msa0467080:CDS 40.0%
TTAGGGAGAGAGCAATTGAA+AGG + chr3_3:68231005-68231024 Msa0467080:CDS 40.0%
! AGGGAAGAAATCAGGGTATT+TGG - chr3_3:68231180-68231199 None:intergenic 40.0%
TCAACATCGAGTCCTTCAAA+TGG + chr3_3:68231295-68231314 Msa0467080:CDS 40.0%
GAGTCCTTCAAATGGTCATT+CGG + chr3_3:68231303-68231322 Msa0467080:CDS 40.0%
AATGCCGAATGACCATTTGA+AGG - chr3_3:68231310-68231329 None:intergenic 40.0%
GCATTCTTTCCATCCATAGA+GGG - chr3_3:68231506-68231525 None:intergenic 40.0%
TGCATTCTTTCCATCCATAG+AGG - chr3_3:68231507-68231526 None:intergenic 40.0%
!! GAAAGAATGCATTGGTTCCT+TGG + chr3_3:68231516-68231535 Msa0467080:CDS 40.0%
! CTTGTTGAGGAAAACTTGCT+AGG - chr3_3:68231592-68231611 None:intergenic 40.0%
!!! GGATTAGGTGGAGACTTTTT+TGG + chr3_3:68231639-68231658 Msa0467080:intron 40.0%
TTTATGATTACCTGCTCACC+TGG - chr3_3:68231718-68231737 None:intergenic 40.0%
GAGTCATAAACACTTTGGCA+AGG - chr3_3:68231820-68231839 None:intergenic 40.0%
GACAACTCAACTGAATCACT+TGG - chr3_3:68231983-68232002 None:intergenic 40.0%
GAAATCCGATGAGTCCTATA+AGG + chr3_3:68232015-68232034 Msa0467080:CDS 40.0%
CTTCTCCTTATAGGACTCAT+CGG - chr3_3:68232023-68232042 None:intergenic 40.0%
GCATAAGCCATTAACTCCAA+TGG - chr3_3:68232193-68232212 None:intergenic 40.0%
TGTGTGATTCTTTGGACAGA+TGG + chr3_3:68232314-68232333 Msa0467080:intron 40.0%
!!! GGTAGTTTTATTTGATGCGG+CGG - chr3_3:68232343-68232362 None:intergenic 40.0%
AATGCTTGCTCCTCTATTTC+AGG - chr3_3:68232387-68232406 None:intergenic 40.0%
ACAACAAGTTCTTACAGGCA+AGG + chr3_3:68232448-68232467 Msa0467080:intron 40.0%
TTTCCATTTGATCGATCCAC+AGG + chr3_3:68232540-68232559 Msa0467080:intron 40.0%
TTACCTGTGGATCGATCAAA+TGG - chr3_3:68232546-68232565 None:intergenic 40.0%
! TCTTCTGTTGAGTTGTTTCG+GGG - chr3_3:68232596-68232615 None:intergenic 40.0%
! GTCTTCTGTTGAGTTGTTTC+GGG - chr3_3:68232597-68232616 None:intergenic 40.0%
AGATATTGCGAAGAAGACTG+AGG + chr3_3:68232769-68232788 Msa0467080:intron 40.0%
GATATTGCGAAGAAGACTGA+GGG + chr3_3:68232770-68232789 Msa0467080:intron 40.0%
!! TTCTGGAATCGTTTCCAATG+AGG + chr3_3:68232837-68232856 Msa0467080:CDS 40.0%
GATGTTTCCAAAGCAAGCAA+GGG - chr3_3:68232880-68232899 None:intergenic 40.0%
AGATGTTTCCAAAGCAAGCA+AGG - chr3_3:68232881-68232900 None:intergenic 40.0%
AACAAGAAAAGAAAAGGCCG+TGG + chr3_3:68233033-68233052 Msa0467080:three_prime_UTR 40.0%
ACAACCATGGTTGAAGCTTC+AGG + chr3_3:68228683-68228702 Msa0467080:CDS 45.0%
CAACCATGGTTGAAGCTTCA+GGG + chr3_3:68228684-68228703 Msa0467080:CDS 45.0%
! AGGAATAAGAGTGGTGGTGT+TGG - chr3_3:68228723-68228742 None:intergenic 45.0%
CTCTGCAACCTCATCATTGA+TGG + chr3_3:68228814-68228833 Msa0467080:CDS 45.0%
GAATCATTCTCACATCCCCA+AGG - chr3_3:68228848-68228867 None:intergenic 45.0%
GAGAAATGGTTGTCTCAGTC+AGG + chr3_3:68228890-68228909 Msa0467080:CDS 45.0%
TCAGGAGTGATGACAAGTTC+AGG - chr3_3:68229019-68229038 None:intergenic 45.0%
TCAATACTTCACCAGCTTCC+GGG - chr3_3:68229617-68229636 None:intergenic 45.0%
AGAAGTGAGTATGGTTGACG+AGG - chr3_3:68229741-68229760 None:intergenic 45.0%
ATCTCACATTCTCCCTAGCA+AGG - chr3_3:68229887-68229906 None:intergenic 45.0%
GCAGAGAATGCAGTCAAATG+TGG + chr3_3:68229996-68230015 Msa0467080:intron 45.0%
!! GCTGTTTCTCTGATGTAGGA+GGG - chr3_3:68230807-68230826 None:intergenic 45.0%
!! AGCTGTTTCTCTGATGTAGG+AGG - chr3_3:68230808-68230827 None:intergenic 45.0%
AGCAGAACTAGATCGCTACT+TGG + chr3_3:68230970-68230989 Msa0467080:CDS 45.0%
CCTCTTCAGGGAAGAAATCA+GGG - chr3_3:68231187-68231206 None:intergenic 45.0%
ACCTCTTCAGGGAAGAAATC+AGG - chr3_3:68231188-68231207 None:intergenic 45.0%
TCATGATATTGGCACCGTGT+AGG + chr3_3:68231472-68231491 Msa0467080:intron 45.0%
ATATTGGCACCGTGTAGGTT+CGG + chr3_3:68231477-68231496 Msa0467080:intron 45.0%
TGATTCATCATGTCTGCCCA+AGG - chr3_3:68231536-68231555 None:intergenic 45.0%
GGGGAGCTTCTGTTATCATA+TGG + chr3_3:68231932-68231951 Msa0467080:CDS 45.0%
GGCCAACCAGTAATCCTTAT+AGG - chr3_3:68232172-68232191 None:intergenic 45.0%
! AAGGATTACTGGTTGGCCAT+TGG + chr3_3:68232174-68232193 Msa0467080:CDS 45.0%
! TGGTTGGCCATTGGAGTTAA+TGG + chr3_3:68232183-68232202 Msa0467080:CDS 45.0%
GTTAGTCCTTCAAGCATGAG+AGG + chr3_3:68232223-68232242 Msa0467080:CDS 45.0%
TTGATCGATCCACAGGTAAG+TGG + chr3_3:68232547-68232566 Msa0467080:intron 45.0%
GGTAAGTGGATCGCTAGATT+TGG + chr3_3:68232561-68232580 Msa0467080:intron 45.0%
CTCGCTATTACACAAGTCCA+CGG - chr3_3:68232638-68232657 None:intergenic 45.0%
GAAGAAGACTGAGGGATATG+AGG + chr3_3:68232778-68232797 Msa0467080:CDS 45.0%
! TTTTCCACCCTTGCTTGCTT+TGG + chr3_3:68232870-68232889 Msa0467080:three_prime_UTR 45.0%
CATCCCTGAAGCTTCAACCA+TGG - chr3_3:68228690-68228709 None:intergenic 50.0%
GGAGTGATGACAAGTTCAGG+AGG - chr3_3:68229016-68229035 None:intergenic 50.0%
ACTGTCTATGAGGCCCTGTT+TGG - chr3_3:68229349-68229368 None:intergenic 50.0%
TTATTAGGAGTGGAGCTGCC+CGG + chr3_3:68229596-68229615 Msa0467080:intron 50.0%
GTTGCAAGCAATGGCCAATC+TGG - chr3_3:68229654-68229673 None:intergenic 50.0%
GTCAAATGTGGCCTCAATCG+CGG + chr3_3:68230008-68230027 Msa0467080:intron 50.0%
GGAGAGAGAATGACGCAGTA+CGG + chr3_3:68230467-68230486 Msa0467080:intron 50.0%
CCCTGATTTCTTCCCTGAAG+AGG + chr3_3:68231184-68231203 Msa0467080:CDS 50.0%
! ACCTGCTCACCTGGTTGATA+GGG - chr3_3:68231709-68231728 None:intergenic 50.0%
TACCTGCTCACCTGGTTGAT+AGG - chr3_3:68231710-68231729 None:intergenic 50.0%
TCTAGCGATCCACTTACCTG+TGG - chr3_3:68232559-68232578 None:intergenic 50.0%
!! CTTTCTAAAGCAGCTAGCCG+TGG + chr3_3:68232618-68232637 Msa0467080:CDS 50.0%
ACTTGTGTAATAGCGAGCGC+AGG + chr3_3:68232641-68232660 Msa0467080:CDS 50.0%
AGACTGAGGGATATGAGGAC+TGG + chr3_3:68232783-68232802 Msa0467080:CDS 50.0%
GTTTCCAAAGCAAGCAAGGG+TGG - chr3_3:68232877-68232896 None:intergenic 50.0%
! ATGACGCAGTACGGAAGCGT+AGG + chr3_3:68230476-68230495 Msa0467080:intron 55.0%
! TGACGCAGTACGGAAGCGTA+GGG + chr3_3:68230477-68230496 Msa0467080:intron 55.0%
! GGGTTAGCAAGCGCTAAACC+TGG + chr3_3:68230497-68230516 Msa0467080:intron 55.0%
! CGGCATTCTTTTCTCGCGCA+TGG + chr3_3:68231323-68231342 Msa0467080:CDS 55.0%
TCGCGCATGGTGAGTCAATC+TGG + chr3_3:68231336-68231355 Msa0467080:intron 55.0%
AGAGGGCAACCGAACCTACA+CGG - chr3_3:68231489-68231508 None:intergenic 55.0%
! GTAGGTTCGGTTGCCCTCTA+TGG + chr3_3:68231490-68231509 Msa0467080:intron 55.0%
GTTCGGTTGCCCTCTATGGA+TGG + chr3_3:68231494-68231513 Msa0467080:CDS 55.0%
ACGGATCGTCCCTATCAACC+AGG + chr3_3:68231697-68231716 Msa0467080:CDS 55.0%
TCCCTATCAACCAGGTGAGC+AGG + chr3_3:68231705-68231724 Msa0467080:CDS 55.0%
CTTGGATTCGTGCCCTCCTT+TGG - chr3_3:68231965-68231984 None:intergenic 55.0%
GCCTCAATCGCGGTCAGCTG+CGG + chr3_3:68230018-68230037 Msa0467080:intron 65.0%
GAGTGGAGCTGCCCGGAAGC+TGG + chr3_3:68229603-68229622 Msa0467080:CDS 70.0%
GCCGCAGCTGACCGCGATTG+AGG - chr3_3:68230022-68230041 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 68228562 68233190 68228562 ID=Msa0467080;Name=Msa0467080
chr3_3 mRNA 68228562 68233190 68228562 ID=Msa0467080-mRNA-1;Parent=Msa0467080;Name=Msa0467080-mRNA-1;_AED=0.06;_eAED=0.06;_QI=118|1|1|1|1|1|12|333|497
chr3_3 exon 68228562 68229042 68228562 ID=Msa0467080-mRNA-1:exon:15755;Parent=Msa0467080-mRNA-1
chr3_3 exon 68229603 68229766 68229603 ID=Msa0467080-mRNA-1:exon:15756;Parent=Msa0467080-mRNA-1
chr3_3 exon 68230964 68231047 68230964 ID=Msa0467080-mRNA-1:exon:15757;Parent=Msa0467080-mRNA-1
chr3_3 exon 68231148 68231205 68231148 ID=Msa0467080-mRNA-1:exon:15758;Parent=Msa0467080-mRNA-1
chr3_3 exon 68231291 68231344 68231291 ID=Msa0467080-mRNA-1:exon:15759;Parent=Msa0467080-mRNA-1
chr3_3 exon 68231494 68231565 68231494 ID=Msa0467080-mRNA-1:exon:15760;Parent=Msa0467080-mRNA-1
chr3_3 exon 68231646 68231726 68231646 ID=Msa0467080-mRNA-1:exon:15761;Parent=Msa0467080-mRNA-1
chr3_3 exon 68231902 68232074 68231902 ID=Msa0467080-mRNA-1:exon:15762;Parent=Msa0467080-mRNA-1
chr3_3 exon 68232156 68232258 68232156 ID=Msa0467080-mRNA-1:exon:15763;Parent=Msa0467080-mRNA-1
chr3_3 exon 68232333 68232464 68232333 ID=Msa0467080-mRNA-1:exon:15764;Parent=Msa0467080-mRNA-1
chr3_3 exon 68232562 68232684 68232562 ID=Msa0467080-mRNA-1:exon:15765;Parent=Msa0467080-mRNA-1
chr3_3 exon 68232771 68233190 68232771 ID=Msa0467080-mRNA-1:exon:15766;Parent=Msa0467080-mRNA-1
chr3_3 five_prime_UTR 68228562 68228679 68228562 ID=Msa0467080-mRNA-1:five_prime_utr;Parent=Msa0467080-mRNA-1
chr3_3 CDS 68228680 68229042 68228680 ID=Msa0467080-mRNA-1:cds;Parent=Msa0467080-mRNA-1
chr3_3 CDS 68229603 68229766 68229603 ID=Msa0467080-mRNA-1:cds;Parent=Msa0467080-mRNA-1
chr3_3 CDS 68230964 68231047 68230964 ID=Msa0467080-mRNA-1:cds;Parent=Msa0467080-mRNA-1
chr3_3 CDS 68231148 68231205 68231148 ID=Msa0467080-mRNA-1:cds;Parent=Msa0467080-mRNA-1
chr3_3 CDS 68231291 68231344 68231291 ID=Msa0467080-mRNA-1:cds;Parent=Msa0467080-mRNA-1
chr3_3 CDS 68231494 68231565 68231494 ID=Msa0467080-mRNA-1:cds;Parent=Msa0467080-mRNA-1
chr3_3 CDS 68231646 68231726 68231646 ID=Msa0467080-mRNA-1:cds;Parent=Msa0467080-mRNA-1
chr3_3 CDS 68231902 68232074 68231902 ID=Msa0467080-mRNA-1:cds;Parent=Msa0467080-mRNA-1
chr3_3 CDS 68232156 68232258 68232156 ID=Msa0467080-mRNA-1:cds;Parent=Msa0467080-mRNA-1
chr3_3 CDS 68232333 68232464 68232333 ID=Msa0467080-mRNA-1:cds;Parent=Msa0467080-mRNA-1
chr3_3 CDS 68232562 68232684 68232562 ID=Msa0467080-mRNA-1:cds;Parent=Msa0467080-mRNA-1
chr3_3 CDS 68232771 68232857 68232771 ID=Msa0467080-mRNA-1:cds;Parent=Msa0467080-mRNA-1
chr3_3 three_prime_UTR 68232858 68233190 68232858 ID=Msa0467080-mRNA-1:three_prime_utr;Parent=Msa0467080-mRNA-1
Gene Sequence

>Msa0467080

ATGACAACCATGGTTGAAGCTTCAGGGATGATGATGTTCACCAACACCACCACTCTTATTCCTACTTTTAACCAAACAATTCACAAAACAACACATCTTGGATTCTCACGTAGAAACAATGCTCATTTTTCACTCTCTGCAACCTCATCATTGATGGAAACTATTCCTTGGGGATGTGAGAATGATTCAATTGAAAATTCATCTTCTCTTGAGAAATGGTTGTCTCAGTCAGGTCTTCCTTCTCAGAAGATGTCCATTGATAAAGTTGATGTTGGTGAGAGAGGACTTGTTGCTTTGAAGAATATTAGGAAAGGAGAGAAGCTTCTTTTTGTTCCTCCTGAACTTGTCATCACTCCTGATTCTGAGTGGAGCTGCCCGGAAGCTGGTGAAGTATTGAAAAAGAATTCAGTTCCAGATTGGCCATTGCTTGCAACTTACCTTATAAGTGAAGCTAGTCTCATGAAATCTTCCAGATGGTTCAGTTATATATCGGCTTTACCTCGTCAACCATACTCACTTCTTTACTGGTCACAAGCAGAACTAGATCGCTACTTGGAAGCTTCACAGATTAGGGAGAGAGCAATTGAAAGGACTAATAATGTTATTGGAACATACAATGATATGAGGGTTAGAATATTTTCCAAATACCCTGATTTCTTCCCTGAAGAGGTGTTCAACATCGAGTCCTTCAAATGGTCATTCGGCATTCTTTTCTCGCGCATGGTTCGGTTGCCCTCTATGGATGGAAAGAATGCATTGGTTCCTTGGGCAGACATGATGAATCATAGTTGTGAGGTGGAGACTTTTTTGGATTATGATAAATCGTCAAAGGGAATTGTCTTTACGACGGATCGTCCCTATCAACCAGGTGAGCAGGTGTTTATTTCATATGGAAAAAAATCAAACGGGGAGCTTCTGTTATCATATGGATTTGTTCCAAAGGAGGGCACGAATCCAAGTGATTCAGTTGAGTTGTCACTGTCACTCAAGAAATCCGATGAGTCCTATAAGGAGAAGTTAGAACTGTTGAAGAAATATGGATTATCAGGATCTCAGTGTTTTCCTATAAGGATTACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTATTTAGCTGTTAGTCCTTCAAGCATGAGAGGAAAATTTGAAGAGATGGCTGCCGCCGCATCAAATAAAACTACCTCGAAAAAGGACTTGAGATATCCTGAAATAGAGGAGCAAGCATTGCAATTTATACTAGATAGTTGTGAATCTAGTATCTCAAAATACAACAAGTTCTTACAGGTAAGTGGATCGCTAGATTTGGATGTGACTTCCCCGAAACAACTCAACAGAAGACTCTTTCTAAAGCAGCTAGCCGTGGACTTGTGTAATAGCGAGCGCAGGATATTGTTTCGTGCTCAATATATATTGCGAAGAAGACTGAGGGATATGAGGACTGGTGAATTAAAAGGCTTGAAAATCTTTAATGGGTTCTGGAATCGTTTCCAATGA

Protein sequence

>Msa0467080

MTTMVEASGMMMFTNTTTLIPTFNQTIHKTTHLGFSRRNNAHFSLSATSSLMETIPWGCENDSIENSSSLEKWLSQSGLPSQKMSIDKVDVGERGLVALKNIRKGEKLLFVPPELVITPDSEWSCPEAGEVLKKNSVPDWPLLATYLISEASLMKSSRWFSYISALPRQPYSLLYWSQAELDRYLEASQIRERAIERTNNVIGTYNDMRVRIFSKYPDFFPEEVFNIESFKWSFGILFSRMVRLPSMDGKNALVPWADMMNHSCEVETFLDYDKSSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGTNPSDSVELSLSLKKSDESYKEKLELLKKYGLSGSQCFPIRITGWPLELMAYAYLAVSPSSMRGKFEEMAAAASNKTTSKKDLRYPEIEEQALQFILDSCESSISKYNKFLQVSGSLDLDVTSPKQLNRRLFLKQLAVDLCNSERRILFRAQYILRRRLRDMRTGELKGLKIFNGFWNRFQ*