AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0873830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0873830 MtrunA17_Chr6g0454691 91.391 151 10 1 1 151 1 148 1.30e-98 280
Msa0873830 MtrunA17_Chr6g0454651 93.103 87 6 0 65 151 1 87 3.40e-55 168
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0873830 AT5G39210.1 47.436 156 77 2 1 151 1 156 2.59e-42 138

Find 49 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAGATAGATTATGATAAA+TGG 0.231787 6_1:-9452390 Msa0873840:three_prime_UTR
TGATAACTTTGGTTTCTTAT+TGG 0.236348 6_1:+9450388 Msa0873830:five_prime_UTR
CATTCATGTTTATGAAGTTT+TGG 0.260089 6_1:-9450412 None:intergenic
TGAAAGAGTGGCTCACAAAT+TGG 0.283330 6_1:+9451900 Msa0873830:CDS
CTTATTTCCACAAGCGTTGC+TGG 0.304325 6_1:-9452284 None:intergenic
AAGAACTAAAACATTGAATT+AGG 0.310142 6_1:-9450853 None:intergenic
TATGATAAATGGATATGATT+AGG 0.322840 6_1:-9452379 Msa0873840:three_prime_UTR
CAAACATGTTATTTACAGTT+TGG 0.325891 6_1:+9452182 Msa0873830:three_prime_UTR
ATAGCTTACAGTGGAGAAAC+TGG 0.342683 6_1:-9450503 None:intergenic
AATTCATACGAGCTACTATA+TGG 0.345183 6_1:+9450364 Msa0873830:five_prime_UTR
GGATGAGAGGTTTGTGTCAG+AGG 0.390149 6_1:+9451859 Msa0873830:CDS
TTCTCTGATTTGGTATACTT+TGG 0.393568 6_1:-9452411 Msa0873840:three_prime_UTR
CTTGAAATTGATGGAGAAGT+TGG 0.397574 6_1:+9452007 Msa0873830:CDS
CTGTTGCAAGGAATTTCATA+TGG 0.399104 6_1:-9452342 Msa0873840:three_prime_UTR
ATCAATTTCAAGTTCACAAA+AGG 0.404929 6_1:-9451996 None:intergenic
ATGATAAATGGATATGATTA+GGG 0.406180 6_1:-9452378 Msa0873840:three_prime_UTR
TACTATATGGATGATAACTT+TGG 0.434572 6_1:+9450377 Msa0873830:five_prime_UTR
GAATTGCTAGATTCTGCATA+TGG 0.450756 6_1:-9450814 None:intergenic
CAACTTGAGGCAGCCTCTGA+TGG 0.456439 6_1:-9450880 None:intergenic
GTTTCATATCTTGCAAGATC+AGG 0.461611 6_1:-9451941 None:intergenic
TCAGTGGTATGAAGTTCGTT+TGG 0.464080 6_1:+9452036 Msa0873830:CDS
TTGTGTCAGTTACAAGAGAA+TGG 0.466554 6_1:-9452162 None:intergenic
TTGGCAAGACACAAATGAAA+TGG 0.474627 6_1:-9452092 None:intergenic
ACAAACCTCTCATCCTTCCC+TGG 0.513237 6_1:-9451851 None:intergenic
AATGGATATGATTAGGGAAG+GGG 0.517425 6_1:-9452372 Msa0873840:three_prime_UTR
AATGTTCTAAATAACACAAA+TGG 0.524205 6_1:-9452139 None:intergenic
GAAAGAAACAGCATCATCAA+TGG 0.526687 6_1:-9451963 None:intergenic
TCAGGAGGAAGAGTCTTGCC+AGG 0.530752 6_1:-9451923 None:intergenic
TTAGTTCTTCTATCCATCAG+AGG 0.531643 6_1:+9450867 Msa0873830:CDS
CTAAAACATTGAATTAGGCC+TGG 0.534335 6_1:-9450848 None:intergenic
GAGTGGCTCACAAATTGGCC+TGG 0.539314 6_1:+9451905 Msa0873830:CDS
TGAAAGACACTTTGAAAGAG+TGG 0.541464 6_1:+9451888 Msa0873830:CDS
CAACTATGACAATCACAAGT+TGG 0.543984 6_1:-9452111 None:intergenic
CGGCAATCGCGTGCAACTTG+AGG 0.554340 6_1:-9450893 None:intergenic
TAAATGGATATGATTAGGGA+AGG 0.562407 6_1:-9452374 Msa0873840:three_prime_UTR
AAATGGATATGATTAGGGAA+GGG 0.563570 6_1:-9452373 Msa0873840:three_prime_UTR
AAGCTATCCAGCAACGCTTG+TGG 0.563944 6_1:+9452277 Msa0873830:three_prime_UTR
ACTTGTGATTGTCATAGTTG+AGG 0.585919 6_1:+9452114 Msa0873830:three_prime_UTR
TAGAACCAGGGAAGGATGAG+AGG 0.587726 6_1:+9451846 Msa0873830:CDS
TCATATCTTGCAAGATCAGG+AGG 0.595737 6_1:-9451938 None:intergenic
CACAAATTAATTAATAACCA+TGG 0.610398 6_1:+9450443 Msa0873830:exon
ACTTATGTACTATTAGAACC+AGG 0.616078 6_1:+9451833 Msa0873830:CDS
GCAATTCATATAACATCACC+AGG 0.622761 6_1:+9450830 Msa0873830:CDS
TGTACTATTAGAACCAGGGA+AGG 0.630431 6_1:+9451838 Msa0873830:CDS
GAGAAGTTGGATCAGTTCAG+TGG 0.664389 6_1:+9452020 Msa0873830:CDS
CTTATGTACTATTAGAACCA+GGG 0.664769 6_1:+9451834 Msa0873830:CDS
AGGCTGCAAAACAACTACCA+TGG 0.682488 6_1:-9450460 None:intergenic
CGATTGCCGAAGTAAAACAA+AGG 0.692445 6_1:+9450907 Msa0873830:CDS
ACTCTAACATTGAAACCATG+AGG 0.728063 6_1:-9450480 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTTGAAAACATATTAT+AGG - chr6_1:9450967-9450986 None:intergenic 15.0%
!! ATTTAATAAAAAAATCTACC+AGG + chr6_1:9451153-9451172 Msa0873830:intron 15.0%
!!! GATTTTTGAAAACATATTAT+AGG - chr6_1:9450967-9450986 None:intergenic 15.0%
!! ATTTAATAAAAAAATCTACC+AGG + chr6_1:9451153-9451172 Msa0873830:intron 15.0%
!! CACAAATTAATTAATAACCA+TGG + chr6_1:9450443-9450462 Msa0873830:exon 20.0%
!! TATACTTCATATCAAGATTA+TGG - chr6_1:9450697-9450716 None:intergenic 20.0%
!! AAGAACTAAAACATTGAATT+AGG - chr6_1:9450856-9450875 None:intergenic 20.0%
!!! AATGTTCTAAATAACACAAA+TGG - chr6_1:9452142-9452161 None:intergenic 20.0%
!! ATGATAAATGGATATGATTA+GGG - chr6_1:9452381-9452400 Msa0873840:three_prime_UTR 20.0%
!! TATGATAAATGGATATGATT+AGG - chr6_1:9452382-9452401 Msa0873840:three_prime_UTR 20.0%
!! CACAAATTAATTAATAACCA+TGG + chr6_1:9450443-9450462 Msa0873830:exon 20.0%
!! TATACTTCATATCAAGATTA+TGG - chr6_1:9450697-9450716 None:intergenic 20.0%
!! AAGAACTAAAACATTGAATT+AGG - chr6_1:9450856-9450875 None:intergenic 20.0%
!!! AATGTTCTAAATAACACAAA+TGG - chr6_1:9452142-9452161 None:intergenic 20.0%
!! ATGATAAATGGATATGATTA+GGG - chr6_1:9452381-9452400 Msa0873840:three_prime_UTR 20.0%
!! TATGATAAATGGATATGATT+AGG - chr6_1:9452382-9452401 Msa0873840:three_prime_UTR 20.0%
! TACTATATGGATGATAACTT+TGG + chr6_1:9450377-9450396 Msa0873830:five_prime_UTR 25.0%
!! TGATAACTTTGGTTTCTTAT+TGG + chr6_1:9450388-9450407 Msa0873830:five_prime_UTR 25.0%
!! CATTCATGTTTATGAAGTTT+TGG - chr6_1:9450415-9450434 None:intergenic 25.0%
!!! GATATACCTTTGTTTTACTT+CGG - chr6_1:9450916-9450935 None:intergenic 25.0%
! TATTCTTGTGATCAGTTAAT+AGG + chr6_1:9451189-9451208 Msa0873830:intron 25.0%
! ATTCTTGTGATCAGTTAATA+GGG + chr6_1:9451190-9451209 Msa0873830:intron 25.0%
!!! AGTTTTGACAAACATATGTT+TGG - chr6_1:9451411-9451430 None:intergenic 25.0%
!!! ATCAATTTCAAGTTCACAAA+AGG - chr6_1:9451999-9452018 None:intergenic 25.0%
!! TTTTGTGAACTTGAAATTGA+TGG + chr6_1:9451998-9452017 Msa0873830:CDS 25.0%
!! CAAACATGTTATTTACAGTT+TGG + chr6_1:9452182-9452201 Msa0873830:three_prime_UTR 25.0%
! TACTATATGGATGATAACTT+TGG + chr6_1:9450377-9450396 Msa0873830:five_prime_UTR 25.0%
!! TGATAACTTTGGTTTCTTAT+TGG + chr6_1:9450388-9450407 Msa0873830:five_prime_UTR 25.0%
!! CATTCATGTTTATGAAGTTT+TGG - chr6_1:9450415-9450434 None:intergenic 25.0%
!!! GATATACCTTTGTTTTACTT+CGG - chr6_1:9450916-9450935 None:intergenic 25.0%
! TATTCTTGTGATCAGTTAAT+AGG + chr6_1:9451189-9451208 Msa0873830:intron 25.0%
! ATTCTTGTGATCAGTTAATA+GGG + chr6_1:9451190-9451209 Msa0873830:intron 25.0%
!!! AGTTTTGACAAACATATGTT+TGG - chr6_1:9451411-9451430 None:intergenic 25.0%
!!! ATCAATTTCAAGTTCACAAA+AGG - chr6_1:9451999-9452018 None:intergenic 25.0%
!! TTTTGTGAACTTGAAATTGA+TGG + chr6_1:9451998-9452017 Msa0873830:CDS 25.0%
!! CAAACATGTTATTTACAGTT+TGG + chr6_1:9452182-9452201 Msa0873830:three_prime_UTR 25.0%
AATTCATACGAGCTACTATA+TGG + chr6_1:9450364-9450383 Msa0873830:five_prime_UTR 30.0%
! AGCCATAACATTGAAGTTTT+TGG + chr6_1:9450643-9450662 Msa0873830:intron 30.0%
CTCCAAAAACTTCAATGTTA+TGG - chr6_1:9450648-9450667 None:intergenic 30.0%
!! AACAACTTTCTCTGAAATCA+GGG - chr6_1:9451239-9451258 None:intergenic 30.0%
TTTCAGAGAAAGTTGTTCAT+TGG + chr6_1:9451242-9451261 Msa0873830:intron 30.0%
TTCAGAGAAAGTTGTTCATT+GGG + chr6_1:9451243-9451262 Msa0873830:intron 30.0%
ATTGGGACATTTAGTATGTT+TGG + chr6_1:9451260-9451279 Msa0873830:intron 30.0%
AGGTTAAATGTGATAAGAAC+TGG + chr6_1:9451469-9451488 Msa0873830:intron 30.0%
CTAAAGTTTGAATCCTAGTT+GGG + chr6_1:9451559-9451578 Msa0873830:intron 30.0%
TAACATATATGAAATGACCC+AGG - chr6_1:9451683-9451702 None:intergenic 30.0%
TATGTTAAACTGCATAACAC+TGG + chr6_1:9451696-9451715 Msa0873830:intron 30.0%
ATGTTAAACTGCATAACACT+GGG + chr6_1:9451697-9451716 Msa0873830:intron 30.0%
! CTAACACTGAATTTTGTAAC+AGG + chr6_1:9451769-9451788 Msa0873830:intron 30.0%
ACTTATGTACTATTAGAACC+AGG + chr6_1:9451833-9451852 Msa0873830:CDS 30.0%
CTTATGTACTATTAGAACCA+GGG + chr6_1:9451834-9451853 Msa0873830:CDS 30.0%
AAATGGATATGATTAGGGAA+GGG - chr6_1:9452376-9452395 Msa0873840:three_prime_UTR 30.0%
TAAATGGATATGATTAGGGA+AGG - chr6_1:9452377-9452396 Msa0873840:three_prime_UTR 30.0%
GGCAGATAGATTATGATAAA+TGG - chr6_1:9452393-9452412 Msa0873840:three_prime_UTR 30.0%
!! TTCTCTGATTTGGTATACTT+TGG - chr6_1:9452414-9452433 Msa0873840:three_prime_UTR 30.0%
AATTCATACGAGCTACTATA+TGG + chr6_1:9450364-9450383 Msa0873830:five_prime_UTR 30.0%
! AGCCATAACATTGAAGTTTT+TGG + chr6_1:9450643-9450662 Msa0873830:intron 30.0%
CTCCAAAAACTTCAATGTTA+TGG - chr6_1:9450648-9450667 None:intergenic 30.0%
!! AACAACTTTCTCTGAAATCA+GGG - chr6_1:9451239-9451258 None:intergenic 30.0%
TTTCAGAGAAAGTTGTTCAT+TGG + chr6_1:9451242-9451261 Msa0873830:intron 30.0%
TTCAGAGAAAGTTGTTCATT+GGG + chr6_1:9451243-9451262 Msa0873830:intron 30.0%
ATTGGGACATTTAGTATGTT+TGG + chr6_1:9451260-9451279 Msa0873830:intron 30.0%
AGGTTAAATGTGATAAGAAC+TGG + chr6_1:9451469-9451488 Msa0873830:intron 30.0%
CTAAAGTTTGAATCCTAGTT+GGG + chr6_1:9451559-9451578 Msa0873830:intron 30.0%
TAACATATATGAAATGACCC+AGG - chr6_1:9451683-9451702 None:intergenic 30.0%
TATGTTAAACTGCATAACAC+TGG + chr6_1:9451696-9451715 Msa0873830:intron 30.0%
ATGTTAAACTGCATAACACT+GGG + chr6_1:9451697-9451716 Msa0873830:intron 30.0%
! CTAACACTGAATTTTGTAAC+AGG + chr6_1:9451769-9451788 Msa0873830:intron 30.0%
ACTTATGTACTATTAGAACC+AGG + chr6_1:9451833-9451852 Msa0873830:CDS 30.0%
CTTATGTACTATTAGAACCA+GGG + chr6_1:9451834-9451853 Msa0873830:CDS 30.0%
AAATGGATATGATTAGGGAA+GGG - chr6_1:9452376-9452395 Msa0873840:three_prime_UTR 30.0%
TAAATGGATATGATTAGGGA+AGG - chr6_1:9452377-9452396 Msa0873840:three_prime_UTR 30.0%
GGCAGATAGATTATGATAAA+TGG - chr6_1:9452393-9452412 Msa0873840:three_prime_UTR 30.0%
!! TTCTCTGATTTGGTATACTT+TGG - chr6_1:9452414-9452433 Msa0873840:three_prime_UTR 30.0%
ACTCTAACATTGAAACCATG+AGG - chr6_1:9450483-9450502 None:intergenic 35.0%
!! CTCCACTGTAAGCTATTTTA+TGG + chr6_1:9450510-9450529 Msa0873830:intron 35.0%
GCTCAAAAGCTGAAAAGATA+AGG - chr6_1:9450536-9450555 None:intergenic 35.0%
GAATTGCTAGATTCTGCATA+TGG - chr6_1:9450817-9450836 None:intergenic 35.0%
GCAATTCATATAACATCACC+AGG + chr6_1:9450830-9450849 Msa0873830:CDS 35.0%
CTAAAACATTGAATTAGGCC+TGG - chr6_1:9450851-9450870 None:intergenic 35.0%
! TTAGTTCTTCTATCCATCAG+AGG + chr6_1:9450867-9450886 Msa0873830:CDS 35.0%
!! GAACAACTTTCTCTGAAATC+AGG - chr6_1:9451240-9451259 None:intergenic 35.0%
!! TTAGTATGTTTGGTTCTGTG+AGG + chr6_1:9451270-9451289 Msa0873830:intron 35.0%
CCAACTAGGATTCAAACTTT+AGG - chr6_1:9451561-9451580 None:intergenic 35.0%
CCTAAAGTTTGAATCCTAGT+TGG + chr6_1:9451558-9451577 Msa0873830:intron 35.0%
! ATATCGTCTTTTCTTCCTAC+AGG - chr6_1:9451646-9451665 None:intergenic 35.0%
! TGTAACAGGTTTTTGCAATG+AGG + chr6_1:9451783-9451802 Msa0873830:intron 35.0%
! TGAAAGACACTTTGAAAGAG+TGG + chr6_1:9451888-9451907 Msa0873830:CDS 35.0%
GTTTCATATCTTGCAAGATC+AGG - chr6_1:9451944-9451963 None:intergenic 35.0%
GAAAGAAACAGCATCATCAA+TGG - chr6_1:9451966-9451985 None:intergenic 35.0%
CTTGAAATTGATGGAGAAGT+TGG + chr6_1:9452007-9452026 Msa0873830:CDS 35.0%
TTGGCAAGACACAAATGAAA+TGG - chr6_1:9452095-9452114 None:intergenic 35.0%
CAACTATGACAATCACAAGT+TGG - chr6_1:9452114-9452133 None:intergenic 35.0%
ACTTGTGATTGTCATAGTTG+AGG + chr6_1:9452114-9452133 Msa0873830:three_prime_UTR 35.0%
TTGTGTCAGTTACAAGAGAA+TGG - chr6_1:9452165-9452184 None:intergenic 35.0%
CTGTTGCAAGGAATTTCATA+TGG - chr6_1:9452345-9452364 Msa0873840:three_prime_UTR 35.0%
AATGGATATGATTAGGGAAG+GGG - chr6_1:9452375-9452394 Msa0873840:three_prime_UTR 35.0%
ACTCTAACATTGAAACCATG+AGG - chr6_1:9450483-9450502 None:intergenic 35.0%
!! CTCCACTGTAAGCTATTTTA+TGG + chr6_1:9450510-9450529 Msa0873830:intron 35.0%
GCTCAAAAGCTGAAAAGATA+AGG - chr6_1:9450536-9450555 None:intergenic 35.0%
GAATTGCTAGATTCTGCATA+TGG - chr6_1:9450817-9450836 None:intergenic 35.0%
GCAATTCATATAACATCACC+AGG + chr6_1:9450830-9450849 Msa0873830:CDS 35.0%
CTAAAACATTGAATTAGGCC+TGG - chr6_1:9450851-9450870 None:intergenic 35.0%
! TTAGTTCTTCTATCCATCAG+AGG + chr6_1:9450867-9450886 Msa0873830:CDS 35.0%
!! GAACAACTTTCTCTGAAATC+AGG - chr6_1:9451240-9451259 None:intergenic 35.0%
!! TTAGTATGTTTGGTTCTGTG+AGG + chr6_1:9451270-9451289 Msa0873830:intron 35.0%
CCAACTAGGATTCAAACTTT+AGG - chr6_1:9451561-9451580 None:intergenic 35.0%
CCTAAAGTTTGAATCCTAGT+TGG + chr6_1:9451558-9451577 Msa0873830:intron 35.0%
! ATATCGTCTTTTCTTCCTAC+AGG - chr6_1:9451646-9451665 None:intergenic 35.0%
! TGTAACAGGTTTTTGCAATG+AGG + chr6_1:9451783-9451802 Msa0873830:intron 35.0%
! TGAAAGACACTTTGAAAGAG+TGG + chr6_1:9451888-9451907 Msa0873830:CDS 35.0%
GTTTCATATCTTGCAAGATC+AGG - chr6_1:9451944-9451963 None:intergenic 35.0%
GAAAGAAACAGCATCATCAA+TGG - chr6_1:9451966-9451985 None:intergenic 35.0%
CTTGAAATTGATGGAGAAGT+TGG + chr6_1:9452007-9452026 Msa0873830:CDS 35.0%
TTGGCAAGACACAAATGAAA+TGG - chr6_1:9452095-9452114 None:intergenic 35.0%
CAACTATGACAATCACAAGT+TGG - chr6_1:9452114-9452133 None:intergenic 35.0%
ACTTGTGATTGTCATAGTTG+AGG + chr6_1:9452114-9452133 Msa0873830:three_prime_UTR 35.0%
TTGTGTCAGTTACAAGAGAA+TGG - chr6_1:9452165-9452184 None:intergenic 35.0%
CTGTTGCAAGGAATTTCATA+TGG - chr6_1:9452345-9452364 Msa0873840:three_prime_UTR 35.0%
AATGGATATGATTAGGGAAG+GGG - chr6_1:9452375-9452394 Msa0873840:three_prime_UTR 35.0%
ATAGCTTACAGTGGAGAAAC+TGG - chr6_1:9450506-9450525 None:intergenic 40.0%
GGCCATAAAATAGCTTACAG+TGG - chr6_1:9450515-9450534 None:intergenic 40.0%
TGTTATGGCTGCATTAGCTA+TGG - chr6_1:9450633-9450652 None:intergenic 40.0%
CGATTGCCGAAGTAAAACAA+AGG + chr6_1:9450907-9450926 Msa0873830:CDS 40.0%
GAATACTAAGACTAAGAGCC+TGG - chr6_1:9451174-9451193 None:intergenic 40.0%
!! ACTTTCTCTGAAATCAGGGT+TGG - chr6_1:9451235-9451254 None:intergenic 40.0%
TTGACGTGAAAGCTTGGATT+TGG + chr6_1:9451323-9451342 Msa0873830:intron 40.0%
AATGCTCCTAAGAACTGCTA+TGG + chr6_1:9451445-9451464 Msa0873830:intron 40.0%
CAACTGTCAAGTTTGAACCA+AGG + chr6_1:9451495-9451514 Msa0873830:intron 40.0%
GTCAAGTTTGAACCAAGGTT+AGG + chr6_1:9451500-9451519 Msa0873830:intron 40.0%
! TTGTGGAAGACTAGTCACTT+CGG - chr6_1:9451531-9451550 None:intergenic 40.0%
!! AAGTGACTAGTCTTCCACAA+CGG + chr6_1:9451531-9451550 Msa0873830:intron 40.0%
AGGTAATCTTGTTCGAGGTA+CGG - chr6_1:9451610-9451629 None:intergenic 40.0%
! AGACGATATGTCAAGTGTTG+TGG + chr6_1:9451657-9451676 Msa0873830:intron 40.0%
! AACAGGTTTTTGCAATGAGG+AGG + chr6_1:9451786-9451805 Msa0873830:intron 40.0%
! TTTTTGCAATGAGGAGGAGA+AGG + chr6_1:9451792-9451811 Msa0873830:CDS 40.0%
! TTTTGCAATGAGGAGGAGAA+GGG + chr6_1:9451793-9451812 Msa0873830:CDS 40.0%
TGTACTATTAGAACCAGGGA+AGG + chr6_1:9451838-9451857 Msa0873830:CDS 40.0%
TGAAAGAGTGGCTCACAAAT+TGG + chr6_1:9451900-9451919 Msa0873830:CDS 40.0%
TCATATCTTGCAAGATCAGG+AGG - chr6_1:9451941-9451960 None:intergenic 40.0%
TCAGTGGTATGAAGTTCGTT+TGG + chr6_1:9452036-9452055 Msa0873830:CDS 40.0%
ATAGCTTACAGTGGAGAAAC+TGG - chr6_1:9450506-9450525 None:intergenic 40.0%
GGCCATAAAATAGCTTACAG+TGG - chr6_1:9450515-9450534 None:intergenic 40.0%
TGTTATGGCTGCATTAGCTA+TGG - chr6_1:9450633-9450652 None:intergenic 40.0%
CGATTGCCGAAGTAAAACAA+AGG + chr6_1:9450907-9450926 Msa0873830:CDS 40.0%
GAATACTAAGACTAAGAGCC+TGG - chr6_1:9451174-9451193 None:intergenic 40.0%
!! ACTTTCTCTGAAATCAGGGT+TGG - chr6_1:9451235-9451254 None:intergenic 40.0%
TTGACGTGAAAGCTTGGATT+TGG + chr6_1:9451323-9451342 Msa0873830:intron 40.0%
AATGCTCCTAAGAACTGCTA+TGG + chr6_1:9451445-9451464 Msa0873830:intron 40.0%
CAACTGTCAAGTTTGAACCA+AGG + chr6_1:9451495-9451514 Msa0873830:intron 40.0%
GTCAAGTTTGAACCAAGGTT+AGG + chr6_1:9451500-9451519 Msa0873830:intron 40.0%
! TTGTGGAAGACTAGTCACTT+CGG - chr6_1:9451531-9451550 None:intergenic 40.0%
!! AAGTGACTAGTCTTCCACAA+CGG + chr6_1:9451531-9451550 Msa0873830:intron 40.0%
AGGTAATCTTGTTCGAGGTA+CGG - chr6_1:9451610-9451629 None:intergenic 40.0%
! AGACGATATGTCAAGTGTTG+TGG + chr6_1:9451657-9451676 Msa0873830:intron 40.0%
! AACAGGTTTTTGCAATGAGG+AGG + chr6_1:9451786-9451805 Msa0873830:intron 40.0%
! TTTTTGCAATGAGGAGGAGA+AGG + chr6_1:9451792-9451811 Msa0873830:CDS 40.0%
! TTTTGCAATGAGGAGGAGAA+GGG + chr6_1:9451793-9451812 Msa0873830:CDS 40.0%
TGTACTATTAGAACCAGGGA+AGG + chr6_1:9451838-9451857 Msa0873830:CDS 40.0%
TGAAAGAGTGGCTCACAAAT+TGG + chr6_1:9451900-9451919 Msa0873830:CDS 40.0%
TCATATCTTGCAAGATCAGG+AGG - chr6_1:9451941-9451960 None:intergenic 40.0%
TCAGTGGTATGAAGTTCGTT+TGG + chr6_1:9452036-9452055 Msa0873830:CDS 40.0%
AGGCTGCAAAACAACTACCA+TGG - chr6_1:9450463-9450482 None:intergenic 45.0%
!! GTAGTTGTTTTGCAGCCTCA+TGG + chr6_1:9450465-9450484 Msa0873830:CDS 45.0%
! AACAAAGGTATATCCCCTGC+AGG + chr6_1:9450922-9450941 Msa0873830:intron 45.0%
! ACAAAGGTATATCCCCTGCA+GGG + chr6_1:9450923-9450942 Msa0873830:intron 45.0%
AGATTTCAGAAGACCCTGCA+GGG - chr6_1:9450939-9450958 None:intergenic 45.0%
!! CTGAAATCAGGGTTGGTACT+TGG - chr6_1:9451228-9451247 None:intergenic 45.0%
ACCATGTTGACGTGAAAGCT+TGG + chr6_1:9451317-9451336 Msa0873830:intron 45.0%
TCCAAGCTTTCACGTCAACA+TGG - chr6_1:9451321-9451340 None:intergenic 45.0%
AACCTGCCATAGCAGTTCTT+AGG - chr6_1:9451454-9451473 None:intergenic 45.0%
!! AGTGACTAGTCTTCCACAAC+GGG + chr6_1:9451532-9451551 Msa0873830:intron 45.0%
! ATATGTCAAGTGTTGTGGCC+TGG + chr6_1:9451662-9451681 Msa0873830:intron 45.0%
! TATGTCAAGTGTTGTGGCCT+GGG + chr6_1:9451663-9451682 Msa0873830:intron 45.0%
GAGAAGTTGGATCAGTTCAG+TGG + chr6_1:9452020-9452039 Msa0873830:CDS 45.0%
! CTTATTTCCACAAGCGTTGC+TGG - chr6_1:9452287-9452306 None:intergenic 45.0%
!!! AGGGGTACTTTTCTGTTGCA+AGG - chr6_1:9452357-9452376 Msa0873840:three_prime_UTR 45.0%
AGGCTGCAAAACAACTACCA+TGG - chr6_1:9450463-9450482 None:intergenic 45.0%
!! GTAGTTGTTTTGCAGCCTCA+TGG + chr6_1:9450465-9450484 Msa0873830:CDS 45.0%
! AACAAAGGTATATCCCCTGC+AGG + chr6_1:9450922-9450941 Msa0873830:intron 45.0%
! ACAAAGGTATATCCCCTGCA+GGG + chr6_1:9450923-9450942 Msa0873830:intron 45.0%
AGATTTCAGAAGACCCTGCA+GGG - chr6_1:9450939-9450958 None:intergenic 45.0%
!! CTGAAATCAGGGTTGGTACT+TGG - chr6_1:9451228-9451247 None:intergenic 45.0%
ACCATGTTGACGTGAAAGCT+TGG + chr6_1:9451317-9451336 Msa0873830:intron 45.0%
TCCAAGCTTTCACGTCAACA+TGG - chr6_1:9451321-9451340 None:intergenic 45.0%
AACCTGCCATAGCAGTTCTT+AGG - chr6_1:9451454-9451473 None:intergenic 45.0%
!! AGTGACTAGTCTTCCACAAC+GGG + chr6_1:9451532-9451551 Msa0873830:intron 45.0%
! ATATGTCAAGTGTTGTGGCC+TGG + chr6_1:9451662-9451681 Msa0873830:intron 45.0%
! TATGTCAAGTGTTGTGGCCT+GGG + chr6_1:9451663-9451682 Msa0873830:intron 45.0%
GAGAAGTTGGATCAGTTCAG+TGG + chr6_1:9452020-9452039 Msa0873830:CDS 45.0%
! CTTATTTCCACAAGCGTTGC+TGG - chr6_1:9452287-9452306 None:intergenic 45.0%
!!! AGGGGTACTTTTCTGTTGCA+AGG - chr6_1:9452357-9452376 Msa0873840:three_prime_UTR 45.0%
!!! ATTTTTTTTATTTTTCTAAA+TGG - chr6_1:9451128-9451147 None:intergenic 5.0%
!!! ATTTTTTTTATTTTTCTAAA+TGG - chr6_1:9451128-9451147 None:intergenic 5.0%
GATTTCAGAAGACCCTGCAG+GGG - chr6_1:9450938-9450957 None:intergenic 50.0%
CAGATTTCAGAAGACCCTGC+AGG - chr6_1:9450940-9450959 None:intergenic 50.0%
!! GCAGGGTCTTCTGAAATCTG+AGG + chr6_1:9450940-9450959 Msa0873830:intron 50.0%
CTCCTAAGAACTGCTATGGC+AGG + chr6_1:9451449-9451468 Msa0873830:intron 50.0%
ACTTCGGCTAGACCTAACCT+TGG - chr6_1:9451515-9451534 None:intergenic 50.0%
AAACTTTAGGTCGCCCGTTG+TGG - chr6_1:9451548-9451567 None:intergenic 50.0%
ACGGGAGGTAATCTTGTTCG+AGG - chr6_1:9451615-9451634 None:intergenic 50.0%
TCGAACAAGATTACCTCCCG+TGG + chr6_1:9451614-9451633 Msa0873830:intron 50.0%
AACAAGATTACCTCCCGTGG+AGG + chr6_1:9451617-9451636 Msa0873830:intron 50.0%
TTCCTACAGGTTACCTCCAC+GGG - chr6_1:9451633-9451652 None:intergenic 50.0%
CTTCCTACAGGTTACCTCCA+CGG - chr6_1:9451634-9451653 None:intergenic 50.0%
TAGAACCAGGGAAGGATGAG+AGG + chr6_1:9451846-9451865 Msa0873830:CDS 50.0%
ACAAACCTCTCATCCTTCCC+TGG - chr6_1:9451854-9451873 None:intergenic 50.0%
GGATGAGAGGTTTGTGTCAG+AGG + chr6_1:9451859-9451878 Msa0873830:CDS 50.0%
AAGCTATCCAGCAACGCTTG+TGG + chr6_1:9452277-9452296 Msa0873830:three_prime_UTR 50.0%
GATTTCAGAAGACCCTGCAG+GGG - chr6_1:9450938-9450957 None:intergenic 50.0%
CAGATTTCAGAAGACCCTGC+AGG - chr6_1:9450940-9450959 None:intergenic 50.0%
!! GCAGGGTCTTCTGAAATCTG+AGG + chr6_1:9450940-9450959 Msa0873830:intron 50.0%
CTCCTAAGAACTGCTATGGC+AGG + chr6_1:9451449-9451468 Msa0873830:intron 50.0%
ACTTCGGCTAGACCTAACCT+TGG - chr6_1:9451515-9451534 None:intergenic 50.0%
AAACTTTAGGTCGCCCGTTG+TGG - chr6_1:9451548-9451567 None:intergenic 50.0%
ACGGGAGGTAATCTTGTTCG+AGG - chr6_1:9451615-9451634 None:intergenic 50.0%
TCGAACAAGATTACCTCCCG+TGG + chr6_1:9451614-9451633 Msa0873830:intron 50.0%
AACAAGATTACCTCCCGTGG+AGG + chr6_1:9451617-9451636 Msa0873830:intron 50.0%
TTCCTACAGGTTACCTCCAC+GGG - chr6_1:9451633-9451652 None:intergenic 50.0%
CTTCCTACAGGTTACCTCCA+CGG - chr6_1:9451634-9451653 None:intergenic 50.0%
TAGAACCAGGGAAGGATGAG+AGG + chr6_1:9451846-9451865 Msa0873830:CDS 50.0%
ACAAACCTCTCATCCTTCCC+TGG - chr6_1:9451854-9451873 None:intergenic 50.0%
GGATGAGAGGTTTGTGTCAG+AGG + chr6_1:9451859-9451878 Msa0873830:CDS 50.0%
AAGCTATCCAGCAACGCTTG+TGG + chr6_1:9452277-9452296 Msa0873830:three_prime_UTR 50.0%
CAACTTGAGGCAGCCTCTGA+TGG - chr6_1:9450883-9450902 None:intergenic 55.0%
GGTGGATAGCTCTCCCAACT+AGG - chr6_1:9451575-9451594 None:intergenic 55.0%
GTACGGTCGAGCACTAAAGG+TGG - chr6_1:9451593-9451612 None:intergenic 55.0%
GAGGTACGGTCGAGCACTAA+AGG - chr6_1:9451596-9451615 None:intergenic 55.0%
GAGTGGCTCACAAATTGGCC+TGG + chr6_1:9451905-9451924 Msa0873830:CDS 55.0%
TCAGGAGGAAGAGTCTTGCC+AGG - chr6_1:9451926-9451945 None:intergenic 55.0%
CAACTTGAGGCAGCCTCTGA+TGG - chr6_1:9450883-9450902 None:intergenic 55.0%
GGTGGATAGCTCTCCCAACT+AGG - chr6_1:9451575-9451594 None:intergenic 55.0%
GTACGGTCGAGCACTAAAGG+TGG - chr6_1:9451593-9451612 None:intergenic 55.0%
GAGGTACGGTCGAGCACTAA+AGG - chr6_1:9451596-9451615 None:intergenic 55.0%
GAGTGGCTCACAAATTGGCC+TGG + chr6_1:9451905-9451924 Msa0873830:CDS 55.0%
TCAGGAGGAAGAGTCTTGCC+AGG - chr6_1:9451926-9451945 None:intergenic 55.0%
CGGCAATCGCGTGCAACTTG+AGG - chr6_1:9450896-9450915 None:intergenic 60.0%
CTACAGGTTACCTCCACGGG+AGG - chr6_1:9451630-9451649 None:intergenic 60.0%
CTCCCGTGGAGGTAACCTGT+AGG + chr6_1:9451628-9451647 Msa0873830:intron 60.0%
CGGCAATCGCGTGCAACTTG+AGG - chr6_1:9450896-9450915 None:intergenic 60.0%
CTACAGGTTACCTCCACGGG+AGG - chr6_1:9451630-9451649 None:intergenic 60.0%
CTCCCGTGGAGGTAACCTGT+AGG + chr6_1:9451628-9451647 Msa0873830:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 9450354 9452433 9450354 ID=Msa0873830;Name=Msa0873830
chr6_1 mRNA 9450354 9452433 9450354 ID=Msa0873830-mRNA-1;Parent=Msa0873830;Name=Msa0873830-mRNA-1;_AED=0.00;_eAED=0.00;_QI=108|1|1|1|1|1|3|370|151
chr6_1 exon 9450354 9450516 9450354 ID=Msa0873830-mRNA-1:exon:2872;Parent=Msa0873830-mRNA-1
chr6_1 exon 9450801 9450928 9450801 ID=Msa0873830-mRNA-1:exon:2873;Parent=Msa0873830-mRNA-1
chr6_1 exon 9451791 9452433 9451791 ID=Msa0873830-mRNA-1:exon:2874;Parent=Msa0873830-mRNA-1
chr6_1 five_prime_UTR 9450354 9450461 9450354 ID=Msa0873830-mRNA-1:five_prime_utr;Parent=Msa0873830-mRNA-1
chr6_1 CDS 9450462 9450516 9450462 ID=Msa0873830-mRNA-1:cds;Parent=Msa0873830-mRNA-1
chr6_1 CDS 9450801 9450928 9450801 ID=Msa0873830-mRNA-1:cds;Parent=Msa0873830-mRNA-1
chr6_1 CDS 9451791 9452063 9451791 ID=Msa0873830-mRNA-1:cds;Parent=Msa0873830-mRNA-1
chr6_1 three_prime_UTR 9452064 9452433 9452064 ID=Msa0873830-mRNA-1:three_prime_utr;Parent=Msa0873830-mRNA-1
Gene Sequence

>Msa0873830

ATGGTAGTTGTTTTGCAGCCTCATGGTTTCAATGTTAGAGTCCAGTTTCTCCACTCTACAAAAAGTTACCATATGCAGAATCTAGCAATTCATATAACATCACCAGGCCTAATTCAATGTTTTAGTTCTTCTATCCATCAGAGGCTGCCTCAAGTTGCACGCGATTGCCGAAGTAAAACAAAGGTTTTTGCAATGAGGAGGAGAAGGGCAAATGAAAGAACAGATACTTATGTACTATTAGAACCAGGGAAGGATGAGAGGTTTGTGTCAGAGGAAGAGTTGAAAGACACTTTGAAAGAGTGGCTCACAAATTGGCCTGGCAAGACTCTTCCTCCTGATCTTGCAAGATATGAAACCATTGATGATGCTGTTTCTTTCTTAGCAAAGTCCTTTTGTGAACTTGAAATTGATGGAGAAGTTGGATCAGTTCAGTGGTATGAAGTTCGTTTGGAGTAA

Protein sequence

>Msa0873830

MVVVLQPHGFNVRVQFLHSTKSYHMQNLAIHITSPGLIQCFSSSIHQRLPQVARDCRSKTKVFAMRRRRANERTDTYVLLEPGKDERFVSEEELKDTLKEWLTNWPGKTLPPDLARYETIDDAVSFLAKSFCELEIDGEVGSVQWYEVRLE*