AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1036390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1036390 MtrunA17_Chr7g0260731 95.307 277 2 1 91 367 1 266 0.0 539
Msa1036390 MtrunA17_Chr1g0187901 69.231 403 100 8 1 392 1 390 5.51e-169 478
Msa1036390 MtrunA17_Chr1g0165841 55.733 375 133 6 25 392 19 367 1.12e-133 387
Msa1036390 MtrunA17_Chr8g0380621 43.627 408 195 7 1 392 34 422 5.02e-104 313
Msa1036390 MtrunA17_Chr2g0333971 44.254 409 165 10 17 379 43 434 2.50e-97 297
Msa1036390 MtrunA17_Chr1g0165861 59.825 229 76 2 164 392 3 215 2.50e-93 279
Msa1036390 MtrunA17_Chr5g0393831 41.667 432 174 11 12 384 23 435 2.33e-92 284
Msa1036390 MtrunA17_Chr5g0419611 37.065 402 189 9 17 387 32 400 6.50e-77 243
Msa1036390 MtrunA17_Chr8g0384941 37.965 403 205 6 18 386 28 419 3.26e-76 242
Msa1036390 MtrunA17_Chr1g0206981 35.934 423 207 11 18 389 14 423 2.19e-72 232
Msa1036390 MtrunA17_Chr7g0260721 97.368 76 2 0 1 76 1 76 1.15e-44 149
Msa1036390 MtrunA17_Chr1g0187911 49.701 167 33 3 199 365 37 152 2.11e-43 148
Msa1036390 MtrunA17_Chr8g0385861 34.884 215 111 3 17 202 26 240 1.40e-35 130
Msa1036390 MtrunA17_Chr1g0165871 50.000 126 48 2 18 128 6 131 1.75e-28 109
Msa1036390 MtrunA17_Chr2g0307921 61.842 76 22 1 17 85 9 84 1.11e-20 86.3
Msa1036390 MtrunA17_Chr8g0385851 36.792 106 67 0 285 390 5 110 5.76e-18 79.0
Msa1036390 MtrunA17_Chr2g0307931 63.492 63 16 1 30 85 20 82 1.16e-16 75.1
Msa1036390 MtrunA17_Chr1g0176551 48.864 88 44 1 135 222 57 143 8.99e-16 77.0
Msa1036390 MtrunA17_Chr2g0320641 23.140 363 218 7 32 383 123 435 3.87e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1036390 AT5G64560.1 69.767 387 94 6 18 392 19 394 3.66e-165 468
Msa1036390 AT5G09690.2 62.916 391 116 5 12 392 26 397 1.37e-163 464
Msa1036390 AT5G09690.1 62.916 391 116 5 12 392 15 386 1.78e-163 464
Msa1036390 AT5G64560.2 70.278 360 84 6 18 365 19 367 5.75e-153 437
Msa1036390 AT5G09690.12 63.462 364 104 5 12 365 26 370 3.00e-151 432
Msa1036390 AT5G09690.4 57.841 389 124 4 12 392 15 371 5.24e-143 411
Msa1036390 AT5G09690.9 62.577 326 93 5 12 327 15 321 8.26e-125 363
Msa1036390 AT5G09690.13 62.848 323 91 5 12 324 26 329 1.24e-124 363
Msa1036390 AT5G09690.7 62.654 324 92 5 12 325 15 319 1.25e-124 363
Msa1036390 AT5G09690.8 62.654 324 92 5 12 325 26 330 1.30e-124 363
Msa1036390 AT5G09690.11 62.654 324 92 5 12 325 26 330 1.30e-124 363
Msa1036390 AT5G09690.3 62.848 323 91 5 12 324 15 318 2.04e-124 362
Msa1036390 AT1G16010.3 45.500 400 166 8 17 379 44 428 9.91e-102 308
Msa1036390 AT1G16010.1 45.500 400 166 8 17 379 44 428 9.91e-102 308
Msa1036390 AT1G16010.2 45.500 400 166 8 17 379 44 428 9.91e-102 308
Msa1036390 AT3G58970.1 43.970 398 184 8 17 392 56 436 4.66e-101 306
Msa1036390 AT5G09690.5 61.091 275 89 4 12 276 15 281 1.07e-98 295
Msa1036390 AT5G09690.14 61.091 275 89 4 12 276 26 292 1.50e-98 295
Msa1036390 AT5G09690.10 61.091 275 89 4 12 276 26 292 1.50e-98 295
Msa1036390 AT5G09690.6 61.091 275 89 4 12 276 26 292 1.50e-98 295
Msa1036390 AT1G80900.2 44.039 411 180 9 17 390 44 441 1.81e-98 300
Msa1036390 AT1G80900.1 44.039 411 180 9 17 390 44 441 1.81e-98 300
Msa1036390 AT5G09720.1 55.319 282 101 8 23 291 18 287 8.21e-87 265
Msa1036390 AT5G09720.2 55.319 282 101 8 23 291 18 287 8.21e-87 265
Msa1036390 AT3G19640.1 38.274 452 179 11 25 390 46 483 3.69e-84 265
Msa1036390 AT2G03620.1 38.272 405 186 7 17 387 42 416 2.12e-77 245
Msa1036390 AT2G03620.2 38.272 405 186 7 17 387 42 416 2.12e-77 245
Msa1036390 AT4G28580.1 35.092 379 206 8 26 390 55 407 1.69e-67 219

Find 91 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCACGCATATGTATTTAAA+TGG 0.188180 7_1:+72732439 Msa1036390:CDS
TCATTGGTAGCTGCAATATT+TGG 0.220816 7_1:+72732387 Msa1036390:CDS
TGACCTTCTTTCCATGTATA+TGG 0.239696 7_1:-72732420 None:intergenic
AAAAGATTTGATTACCTTAG+AGG 0.251185 7_1:-72730449 None:intergenic
GGCAATAGCTTGATTTATAA+TGG 0.283237 7_1:+72732961 Msa1036390:three_prime_UTR
TCATATCCTTCCACCATTCT+TGG 0.294400 7_1:+72729560 Msa1036390:CDS
ACAGATCAGCAGTCGTAATT+TGG 0.309187 7_1:+72731036 Msa1036390:intron
TCCATCAATTTGTATGAAAT+AGG 0.322286 7_1:-72731852 None:intergenic
CTCAAAGATCTTCTATATCT+TGG 0.328184 7_1:-72732891 None:intergenic
TCCATTTGAGTTTCGAGCTT+TGG 0.329463 7_1:+72730339 Msa1036390:CDS
TCACCGAAATCAACTGATTC+AGG 0.331607 7_1:+72732238 Msa1036390:CDS
GACTGCTGCTTATCCAGCTT+TGG 0.351888 7_1:+72730417 Msa1036390:CDS
ATACCTGAATCAGTTGATTT+CGG 0.353513 7_1:-72732241 None:intergenic
TGCAAGAGATCTTCGAATAA+TGG 0.360463 7_1:+72729526 Msa1036390:CDS
CCACTCAAGGTAAGTGTTGC+TGG 0.361150 7_1:+72729939 Msa1036390:CDS
GCCTATTTCATACAAATTGA+TGG 0.369964 7_1:+72731851 Msa1036390:CDS
CACATAACTCTTCTTCTACT+TGG 0.378469 7_1:-72729968 None:intergenic
GGTGAAGGTGGAGAAGAAAA+TGG 0.378750 7_1:+72729999 Msa1036390:CDS
GACTTTCTCTCTTCCAAGAA+TGG 0.389828 7_1:-72729573 None:intergenic
GCTCGACGCAAAGGTCTTGT+TGG 0.403901 7_1:+72732652 Msa1036390:CDS
TTTGGATGAACTAACCTCTA+AGG 0.407168 7_1:+72730435 Msa1036390:CDS
CTAGAGCTATTCCTAAGTTC+CGG 0.407596 7_1:+72732342 Msa1036390:CDS
TAGAGCTATTCCTAAGTTCC+GGG 0.413834 7_1:+72732343 Msa1036390:CDS
AAACTACTATTTCAAGAAGC+TGG 0.423267 7_1:+72729426 Msa1036390:CDS
TCGAGCTTTGGAAGTTGTAT+TGG 0.424295 7_1:+72730351 Msa1036390:CDS
GAAGATCGATGCACCTTGTT+GGG 0.427911 7_1:+72732689 Msa1036390:three_prime_UTR
TAAGTATGCTATTATGCGTT+TGG 0.428253 7_1:+72729493 Msa1036390:CDS
GGAAGTGCAGCAACACTTCA+AGG 0.431204 7_1:+72731541 Msa1036390:CDS
CTGTATGTTAATGTAATCTT+CGG 0.434923 7_1:-72732001 None:intergenic
TCCAAAGCTCGAAACTCAAA+TGG 0.437377 7_1:-72730340 None:intergenic
TTGTTTATCAATATATTCAT+TGG 0.442759 7_1:+72732371 Msa1036390:CDS
CTTCGTAGCTCTTCAACAAC+AGG 0.444279 7_1:-72729909 None:intergenic
ATATGGACTGTGATGCCAAT+TGG 0.456144 7_1:-72731488 None:intergenic
CTTTAGGTGGTGATTCTCAC+TGG 0.464038 7_1:+72732589 Msa1036390:intron
CTCGACGCAAAGGTCTTGTT+GGG 0.467590 7_1:+72732653 Msa1036390:CDS
GGTGGTGATTCTCACTGGAA+TGG 0.470474 7_1:+72732594 Msa1036390:intron
ATTCTCACTGGAATGGTTTG+TGG 0.471920 7_1:+72732601 Msa1036390:CDS
GTAGTTGCAATCAATTTATG+TGG 0.477882 7_1:+72732939 Msa1036390:three_prime_UTR
TCACGCATATGTATTTAAAT+GGG 0.487791 7_1:+72732440 Msa1036390:CDS
GTATGAACATTCCATATACA+TGG 0.489016 7_1:+72732409 Msa1036390:CDS
AGCTTTGGAAGTTGTATTGG+AGG 0.492401 7_1:+72730354 Msa1036390:CDS
AACAAACAGTCCCGGAACTT+AGG 0.497975 7_1:-72732353 None:intergenic
TATGGACTGTGATGCCAATT+GGG 0.507694 7_1:-72731487 None:intergenic
GTAGCTCTGATGGTCCCAAT+TGG 0.508984 7_1:+72731473 Msa1036390:CDS
TGAAGATCGATGCACCTTGT+TGG 0.509800 7_1:+72732688 Msa1036390:three_prime_UTR
ACTTTATTTATCAAGAAAGA+TGG 0.511194 7_1:+72731429 Msa1036390:CDS
CGAAGATTACATTAACATAC+AGG 0.512088 7_1:+72732002 Msa1036390:CDS
ATTCCATATACATGGAAAGA+AGG 0.515189 7_1:+72732417 Msa1036390:CDS
GAGGTTAGTTCATCCAAAGC+TGG 0.516706 7_1:-72730430 None:intergenic
GGCACAACATCATCATCCAT+TGG 0.518806 7_1:-72729888 None:intergenic
TCTCCCTCAAGTAGCTCTGA+TGG 0.520299 7_1:+72731463 Msa1036390:CDS
ATCAGAGCTACTTGAGGGAG+AGG 0.523362 7_1:-72731461 None:intergenic
GAAGAGTTATGTGTTCAAGA+AGG 0.534356 7_1:+72729978 Msa1036390:CDS
ATATCGTATGCTCGACGCAA+AGG 0.536903 7_1:+72732643 Msa1036390:CDS
GAAGTGCAGCAACACTTCAA+GGG 0.539485 7_1:+72731542 Msa1036390:CDS
GGACCATCAGAGCTACTTGA+GGG 0.540157 7_1:-72731466 None:intergenic
GCACAACATCATCATCCATT+GGG 0.541642 7_1:-72729887 None:intergenic
TAGAGATATAGTATTGGATG+TGG 0.546858 7_1:+72729469 Msa1036390:CDS
AAGGTAAGTGTTGCTGGTCA+AGG 0.546948 7_1:+72729945 Msa1036390:CDS
CCAGCAACACTTACCTTGAG+TGG 0.551535 7_1:-72729939 None:intergenic
TGATGCACGGACAAGAGAGT+TGG 0.552309 7_1:+72730393 Msa1036390:CDS
GGCTCTTGCTAGTTCTGAAG+TGG 0.556724 7_1:+72729373 Msa1036390:CDS
ACTCTCTTGTCCGTGCATCA+AGG 0.560525 7_1:-72730390 None:intergenic
TGTGTTCAAGAAGGTGAAGG+TGG 0.562146 7_1:+72729987 Msa1036390:CDS
TGGCATCACAGTCCATATCA+AGG 0.568722 7_1:+72731493 Msa1036390:CDS
AGCTATAATCACTGCTGAAG+AGG 0.569524 7_1:+72729716 Msa1036390:CDS
TTTCTCTCTTCCAAGAATGG+TGG 0.573424 7_1:-72729570 None:intergenic
TTGTTGAAGAGCTACGAAGA+AGG 0.575051 7_1:+72729913 Msa1036390:CDS
TTTGTAGTTTCCTTGATGCA+CGG 0.575385 7_1:+72730380 Msa1036390:CDS
ACGAAGAAGGTTACCACTCA+AGG 0.578939 7_1:+72729926 Msa1036390:CDS
GGTATTGGTTAGAGACCCAA+TGG 0.587484 7_1:+72729872 Msa1036390:intron
TGAAGTTGTCTGATCAAGAT+CGG 0.589745 7_1:+72731717 Msa1036390:CDS
TAATTTCTTGTAGATAAGAG+AGG 0.596735 7_1:+72731366 Msa1036390:intron
TATTGATAAACAAACAGTCC+CGG 0.596765 7_1:-72732361 None:intergenic
ATTAGTTGCAAAATACAAAG+TGG 0.605673 7_1:+72733060 Msa1036390:three_prime_UTR
TTATGTGTTCAAGAAGGTGA+AGG 0.608709 7_1:+72729984 Msa1036390:CDS
GTGGAAGGATATGAAAGAAG+AGG 0.608726 7_1:-72729551 None:intergenic
GTTGTCTGATCAAGATCGGA+CGG 0.610101 7_1:+72731721 Msa1036390:CDS
TCTCTTCCAAGAATGGTGGA+AGG 0.610885 7_1:-72729566 None:intergenic
TGATGGTAGAGATATAGTAT+TGG 0.611654 7_1:+72729463 Msa1036390:CDS
TAGTTGCAATCAATTTATGT+GGG 0.613032 7_1:+72732940 Msa1036390:three_prime_UTR
AAGTGCAGCAACACTTCAAG+GGG 0.628244 7_1:+72731543 Msa1036390:CDS
AGAGCTTGAGATGTTACTAG+AGG 0.632089 7_1:+72731579 Msa1036390:CDS
GATCGATGCACCTTGTTGGG+AGG 0.635193 7_1:+72732692 Msa1036390:three_prime_UTR
GGGACCATCAGAGCTACTTG+AGG 0.636715 7_1:-72731467 None:intergenic
GTTGACAAATCGTGTTCACA+AGG 0.641613 7_1:+72731093 Msa1036390:CDS
TATTCTGGTACCTCCCAACA+AGG 0.647291 7_1:-72732702 None:intergenic
AACATTAAATAAATTGACCA+CGG 0.651405 7_1:+72731874 Msa1036390:CDS
TAGGTGACGAGATGATGTCT+CGG 0.652438 7_1:+72732867 Msa1036390:intron
ATACTATATCTCTACCATCA+CGG 0.653488 7_1:-72729460 None:intergenic
AAAATACACAGATCAAGCAG+AGG 0.682981 7_1:+72731520 Msa1036390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTTATTTTATTATCAT+TGG + chr7_1:72730209-72730228 Msa1036390:intron 10.0%
!! TATATAATATGAATATAGTA+AGG + chr7_1:72730841-72730860 Msa1036390:intron 10.0%
!!! AAATAACAAATAGATTTTTT+AGG + chr7_1:72731123-72731142 Msa1036390:intron 10.0%
!!! ATTCTGATTTTTATAATTTT+TGG + chr7_1:72732553-72732572 Msa1036390:intron 10.0%
!!! TTCTGATTTTTATAATTTTT+GGG + chr7_1:72732554-72732573 Msa1036390:intron 10.0%
!!! AATTATAGTATTGTTAATTT+TGG - chr7_1:72732783-72732802 None:intergenic 10.0%
!! ATAAAAAAGTCATAATTGTT+AGG - chr7_1:72730124-72730143 None:intergenic 15.0%
!!! TGTGTTGTTTTTAATAATAA+TGG + chr7_1:72730286-72730305 Msa1036390:intron 15.0%
!!! GTGTTGTTTTTAATAATAAT+GGG + chr7_1:72730287-72730306 Msa1036390:intron 15.0%
!! TATACTAATAATAACAACAT+TGG + chr7_1:72730792-72730811 Msa1036390:intron 15.0%
!!! AATTAATCAGTATTTTTTTC+AGG - chr7_1:72730909-72730928 None:intergenic 15.0%
!! ATATTTGAATACATGAATTA+TGG - chr7_1:72732273-72732292 None:intergenic 15.0%
!! TTGTTTATCAATATATTCAT+TGG + chr7_1:72732371-72732390 Msa1036390:CDS 15.0%
!! CAAGTTATGGTTATATATAT+TGG - chr7_1:72729641-72729660 None:intergenic 20.0%
!! TAAAAATGATGAAGTGAAAA+TGG + chr7_1:72729817-72729836 Msa1036390:intron 20.0%
!!! GTTTGTTGTTGTTTTATTAT+AGG + chr7_1:72729851-72729870 Msa1036390:intron 20.0%
!!! TGTTGTTTTATTATAGGTAT+TGG + chr7_1:72729857-72729876 Msa1036390:intron 20.0%
!!! AAATGGTAAGCTTTTTTTTT+TGG + chr7_1:72730016-72730035 Msa1036390:intron 20.0%
!!! TTTTTATTAGATAGAACTTG+TGG + chr7_1:72730137-72730156 Msa1036390:intron 20.0%
!! TTGTTAGTTAGAAATATACT+CGG + chr7_1:72730533-72730552 Msa1036390:intron 20.0%
!! AAACACAAAAAAATATCTCA+TGG - chr7_1:72730694-72730713 None:intergenic 20.0%
!!! TTTTTGTGTTTATATCCAAA+TGG + chr7_1:72730703-72730722 Msa1036390:intron 20.0%
!!! TATAGTAAGGTTTTTATCAT+TGG + chr7_1:72730854-72730873 Msa1036390:intron 20.0%
!!! AATACTGATTAATTAGTGTT+TGG + chr7_1:72730915-72730934 Msa1036390:intron 20.0%
!! ACAACATGCATATATATTAT+AGG - chr7_1:72730946-72730965 None:intergenic 20.0%
!!! GGTAATTTTTTCTTTTCAAA+AGG + chr7_1:72731144-72731163 Msa1036390:intron 20.0%
!!! GTTTCTTAGTACATTTTATA+TGG - chr7_1:72731237-72731256 None:intergenic 20.0%
!! TATTAATCAAAGTAAGTTCT+TGG - chr7_1:72731343-72731362 None:intergenic 20.0%
!!! ACTTTATTTATCAAGAAAGA+TGG + chr7_1:72731429-72731448 Msa1036390:CDS 20.0%
!! ATAAATGAAAATCTCTCATT+TGG + chr7_1:72731681-72731700 Msa1036390:intron 20.0%
!! AACATTAAATAAATTGACCA+CGG + chr7_1:72731874-72731893 Msa1036390:CDS 20.0%
!! CTTACAAATTATTTACTACT+AGG + chr7_1:72732088-72732107 Msa1036390:intron 20.0%
!! ATATATCATGCACAATAATA+AGG - chr7_1:72732316-72732335 None:intergenic 20.0%
!!! ATTTGCAAAATTCACTTTTT+AGG + chr7_1:72733010-72733029 Msa1036390:three_prime_UTR 20.0%
!! CAAAAACAGAATTCAAGTTA+TGG - chr7_1:72729654-72729673 None:intergenic 25.0%
! GTATAGAAACGAAATTACAA+TGG + chr7_1:72730038-72730057 Msa1036390:intron 25.0%
! TTGTGAGAAATACATTGTAT+CGG + chr7_1:72730177-72730196 Msa1036390:intron 25.0%
! AAAAGATTTGATTACCTTAG+AGG - chr7_1:72730452-72730471 None:intergenic 25.0%
!! ACAATTATTTGTTAGACTTG+AGG - chr7_1:72730517-72730536 None:intergenic 25.0%
! ATTAGACGAAAATTCAGTTA+AGG - chr7_1:72730578-72730597 None:intergenic 25.0%
!! TAAGGTTTTTATCATTGGAA+AGG + chr7_1:72730859-72730878 Msa1036390:intron 25.0%
!! AAGGTTTTTATCATTGGAAA+GGG + chr7_1:72730860-72730879 Msa1036390:intron 25.0%
!! AATTAAAAAGTGCAATGACT+AGG + chr7_1:72731071-72731090 Msa1036390:CDS 25.0%
! CTTGGATATAAATATGTTGA+AGG - chr7_1:72731325-72731344 None:intergenic 25.0%
! TAATTTCTTGTAGATAAGAG+AGG + chr7_1:72731366-72731385 Msa1036390:intron 25.0%
!!! TGTATTTTTGAACCTTGATA+TGG - chr7_1:72731508-72731527 None:intergenic 25.0%
!!! CTAATTTCTATTGGTTTTTC+TGG - chr7_1:72731650-72731669 None:intergenic 25.0%
! TAGTAGTCTCTAATTTCTAT+TGG - chr7_1:72731659-72731678 None:intergenic 25.0%
! ATACATCATAAGCTAATTCA+TGG - chr7_1:72731804-72731823 None:intergenic 25.0%
! TCCATCAATTTGTATGAAAT+AGG - chr7_1:72731855-72731874 None:intergenic 25.0%
!! TCATTTCTGTTTTACACTTT+AGG + chr7_1:72731957-72731976 Msa1036390:intron 25.0%
! CTGTATGTTAATGTAATCTT+CGG - chr7_1:72732004-72732023 None:intergenic 25.0%
! TTAACATACAGGTAAGTTTA+AGG + chr7_1:72732013-72732032 Msa1036390:intron 25.0%
! TAACATACAGGTAAGTTTAA+GGG + chr7_1:72732014-72732033 Msa1036390:intron 25.0%
! CAAATTTGCACACTATATAT+TGG + chr7_1:72732147-72732166 Msa1036390:intron 25.0%
! TCACGCATATGTATTTAAAT+GGG + chr7_1:72732440-72732459 Msa1036390:CDS 25.0%
! ATTAGACAGAAAAAGAGAAT+CGG + chr7_1:72732517-72732536 Msa1036390:intron 25.0%
!!! ACACTTTTGACTTAATATTC+TGG - chr7_1:72732720-72732739 None:intergenic 25.0%
! TAGTTGCAATCAATTTATGT+GGG + chr7_1:72732940-72732959 Msa1036390:three_prime_UTR 25.0%
!!! TCACTTTTTAGGTTTTATGA+AGG + chr7_1:72733021-72733040 Msa1036390:three_prime_UTR 25.0%
! ATTAGTTGCAAAATACAAAG+TGG + chr7_1:72733060-72733079 Msa1036390:three_prime_UTR 25.0%
AAACTACTATTTCAAGAAGC+TGG + chr7_1:72729426-72729445 Msa1036390:CDS 30.0%
ATACTATATCTCTACCATCA+CGG - chr7_1:72729463-72729482 None:intergenic 30.0%
TGATGGTAGAGATATAGTAT+TGG + chr7_1:72729463-72729482 Msa1036390:CDS 30.0%
! TAGAGATATAGTATTGGATG+TGG + chr7_1:72729469-72729488 Msa1036390:CDS 30.0%
TAAGTATGCTATTATGCGTT+TGG + chr7_1:72729493-72729512 Msa1036390:CDS 30.0%
TCTAGTGTTGTATAGTTTCA+TGG + chr7_1:72730237-72730256 Msa1036390:intron 30.0%
!! AATAATGGGAAATTGACTTG+TGG + chr7_1:72730301-72730320 Msa1036390:intron 30.0%
TCAGTTAAGGTTTGATTGTT+TGG - chr7_1:72730565-72730584 None:intergenic 30.0%
ATAGAGAAGATGTGATATGT+CGG - chr7_1:72730636-72730655 None:intergenic 30.0%
GTGTTTATATCCAAATGGTT+AGG + chr7_1:72730708-72730727 Msa1036390:intron 30.0%
TTATATCCAAATGGTTAGGA+TGG + chr7_1:72730712-72730731 Msa1036390:intron 30.0%
! AGGTTTTTATCATTGGAAAG+GGG + chr7_1:72730861-72730880 Msa1036390:intron 30.0%
TGCATGTTGTCACAAAATTA+TGG + chr7_1:72730956-72730975 Msa1036390:intron 30.0%
CGATTATTAAGGAGTAGAAA+GGG - chr7_1:72730990-72731009 None:intergenic 30.0%
ACGATTATTAAGGAGTAGAA+AGG - chr7_1:72730991-72731010 None:intergenic 30.0%
AACCAAAGTGACGATTATTA+AGG - chr7_1:72731001-72731020 None:intergenic 30.0%
!! AGACATTTAATTTGACGACT+AGG - chr7_1:72731170-72731189 None:intergenic 30.0%
CGTCAAATTAAATGTCTCAA+CGG + chr7_1:72731173-72731192 Msa1036390:intron 30.0%
TACCATTGGTACTGTATTAA+AGG + chr7_1:72731201-72731220 Msa1036390:intron 30.0%
TACCTTTAATACAGTACCAA+TGG - chr7_1:72731206-72731225 None:intergenic 30.0%
! CTAATTCATGGAAATGGATT+AGG - chr7_1:72731792-72731811 None:intergenic 30.0%
CATAAGCTAATTCATGGAAA+TGG - chr7_1:72731798-72731817 None:intergenic 30.0%
GCCTATTTCATACAAATTGA+TGG + chr7_1:72731851-72731870 Msa1036390:CDS 30.0%
CGAAGATTACATTAACATAC+AGG + chr7_1:72732002-72732021 Msa1036390:CDS 30.0%
! CCATTTAAGTTAACTACTTC+CGG + chr7_1:72732122-72732141 Msa1036390:intron 30.0%
TATAGTGTGCAAATTTGAAC+CGG - chr7_1:72732144-72732163 None:intergenic 30.0%
! ATACCTGAATCAGTTGATTT+CGG - chr7_1:72732244-72732263 None:intergenic 30.0%
TATTGATAAACAAACAGTCC+CGG - chr7_1:72732364-72732383 None:intergenic 30.0%
GTATGAACATTCCATATACA+TGG + chr7_1:72732409-72732428 Msa1036390:CDS 30.0%
ATTCCATATACATGGAAAGA+AGG + chr7_1:72732417-72732436 Msa1036390:CDS 30.0%
GTCACGCATATGTATTTAAA+TGG + chr7_1:72732439-72732458 Msa1036390:CDS 30.0%
CGATATTATGGACAAAAAGA+AGG - chr7_1:72732629-72732648 None:intergenic 30.0%
! AGTCAAAAGTGTACATAAAG+TGG + chr7_1:72732728-72732747 Msa1036390:intron 30.0%
!! TTGGTGCTATATATCGAAAT+TGG - chr7_1:72732764-72732783 None:intergenic 30.0%
CTCAAAGATCTTCTATATCT+TGG - chr7_1:72732894-72732913 None:intergenic 30.0%
GTAGTTGCAATCAATTTATG+TGG + chr7_1:72732939-72732958 Msa1036390:three_prime_UTR 30.0%
GGCAATAGCTTGATTTATAA+TGG + chr7_1:72732961-72732980 Msa1036390:three_prime_UTR 30.0%
TGCAAGAGATCTTCGAATAA+TGG + chr7_1:72729526-72729545 Msa1036390:CDS 35.0%
AGTCATTGTTCTCAATCTAG+AGG + chr7_1:72729592-72729611 Msa1036390:intron 35.0%
CACATAACTCTTCTTCTACT+TGG - chr7_1:72729971-72729990 None:intergenic 35.0%
GAAGAGTTATGTGTTCAAGA+AGG + chr7_1:72729978-72729997 Msa1036390:CDS 35.0%
TTATGTGTTCAAGAAGGTGA+AGG + chr7_1:72729984-72730003 Msa1036390:CDS 35.0%
!! TTAGGTTGAATGCCGTAATA+AGG - chr7_1:72730106-72730125 None:intergenic 35.0%
TTTGTAGTTTCCTTGATGCA+CGG + chr7_1:72730380-72730399 Msa1036390:CDS 35.0%
TTTGGATGAACTAACCTCTA+AGG + chr7_1:72730435-72730454 Msa1036390:CDS 35.0%
CTCCTTAATAATCGTCACTT+TGG + chr7_1:72730996-72731015 Msa1036390:intron 35.0%
!!! TCTCAACGGTTTTTTACCAT+TGG + chr7_1:72731187-72731206 Msa1036390:intron 35.0%
TGTCATCATCATCATCAAGT+AGG - chr7_1:72731402-72731421 None:intergenic 35.0%
!! ACTTGATGATGATGATGACA+TGG + chr7_1:72731402-72731421 Msa1036390:CDS 35.0%
AAAATACACAGATCAAGCAG+AGG + chr7_1:72731520-72731539 Msa1036390:CDS 35.0%
TGAAGTTGTCTGATCAAGAT+CGG + chr7_1:72731717-72731736 Msa1036390:CDS 35.0%
TGAATAATGTCGTTCTTTGC+AGG + chr7_1:72731829-72731848 Msa1036390:intron 35.0%
TTAGTTCACTGTTATTACCG+TGG - chr7_1:72731894-72731913 None:intergenic 35.0%
CCGGAAGTAGTTAACTTAAA+TGG - chr7_1:72732125-72732144 None:intergenic 35.0%
! TCATTGGTAGCTGCAATATT+TGG + chr7_1:72732387-72732406 Msa1036390:CDS 35.0%
TGACCTTCTTTCCATGTATA+TGG - chr7_1:72732423-72732442 None:intergenic 35.0%
TGGGTTCAAATTGCATCTTT+AGG + chr7_1:72732573-72732592 Msa1036390:intron 35.0%
GTTCAAATTGCATCTTTAGG+TGG + chr7_1:72732576-72732595 Msa1036390:intron 35.0%
GTACATAAAGTGGAAATCCA+AGG + chr7_1:72732738-72732757 Msa1036390:intron 35.0%
! CTATATATCGAAATTGGCCT+TGG - chr7_1:72732758-72732777 None:intergenic 35.0%
GTGGAAGGATATGAAAGAAG+AGG - chr7_1:72729554-72729573 None:intergenic 40.0%
TCATATCCTTCCACCATTCT+TGG + chr7_1:72729560-72729579 Msa1036390:CDS 40.0%
TTTCTCTCTTCCAAGAATGG+TGG - chr7_1:72729573-72729592 None:intergenic 40.0%
GACTTTCTCTCTTCCAAGAA+TGG - chr7_1:72729576-72729595 None:intergenic 40.0%
AGCTATAATCACTGCTGAAG+AGG + chr7_1:72729716-72729735 Msa1036390:CDS 40.0%
GCACAACATCATCATCCATT+GGG - chr7_1:72729890-72729909 None:intergenic 40.0%
TTGTTGAAGAGCTACGAAGA+AGG + chr7_1:72729913-72729932 Msa1036390:CDS 40.0%
!! AATGGGAAATTGACTTGTGG+TGG + chr7_1:72730304-72730323 Msa1036390:intron 40.0%
! TCCATTTGAGTTTCGAGCTT+TGG + chr7_1:72730339-72730358 Msa1036390:CDS 40.0%
TCCAAAGCTCGAAACTCAAA+TGG - chr7_1:72730343-72730362 None:intergenic 40.0%
!! TCGAGCTTTGGAAGTTGTAT+TGG + chr7_1:72730351-72730370 Msa1036390:CDS 40.0%
!! AGCTTTGGAAGTTGTATTGG+AGG + chr7_1:72730354-72730373 Msa1036390:CDS 40.0%
TATCCAAATGGTTAGGATGG+CGG + chr7_1:72730715-72730734 Msa1036390:intron 40.0%
ACAGATCAGCAGTCGTAATT+TGG + chr7_1:72731036-72731055 Msa1036390:intron 40.0%
GTTGACAAATCGTGTTCACA+AGG + chr7_1:72731093-72731112 Msa1036390:CDS 40.0%
! TATGGACTGTGATGCCAATT+GGG - chr7_1:72731490-72731509 None:intergenic 40.0%
! ATATGGACTGTGATGCCAAT+TGG - chr7_1:72731491-72731510 None:intergenic 40.0%
AGAGCTTGAGATGTTACTAG+AGG + chr7_1:72731579-72731598 Msa1036390:CDS 40.0%
! TCACCGAAATCAACTGATTC+AGG + chr7_1:72732238-72732257 Msa1036390:CDS 40.0%
CTAGAGCTATTCCTAAGTTC+CGG + chr7_1:72732342-72732361 Msa1036390:CDS 40.0%
TAGAGCTATTCCTAAGTTCC+GGG + chr7_1:72732343-72732362 Msa1036390:CDS 40.0%
AGACAGAAAAAGAGAATCGG+TGG + chr7_1:72732520-72732539 Msa1036390:intron 40.0%
GACAGAAAAAGAGAATCGGT+GGG + chr7_1:72732521-72732540 Msa1036390:intron 40.0%
ATTCTCACTGGAATGGTTTG+TGG + chr7_1:72732601-72732620 Msa1036390:CDS 40.0%
! TGGATTTTGCTAGACCGTGA+TGG + chr7_1:72729446-72729465 Msa1036390:CDS 45.0%
! TCTCTTCCAAGAATGGTGGA+AGG - chr7_1:72729569-72729588 None:intergenic 45.0%
!! GGTATTGGTTAGAGACCCAA+TGG + chr7_1:72729872-72729891 Msa1036390:intron 45.0%
GGCACAACATCATCATCCAT+TGG - chr7_1:72729891-72729910 None:intergenic 45.0%
CTTCGTAGCTCTTCAACAAC+AGG - chr7_1:72729912-72729931 None:intergenic 45.0%
ACGAAGAAGGTTACCACTCA+AGG + chr7_1:72729926-72729945 Msa1036390:CDS 45.0%
! AAGGTAAGTGTTGCTGGTCA+AGG + chr7_1:72729945-72729964 Msa1036390:CDS 45.0%
TGTGTTCAAGAAGGTGAAGG+TGG + chr7_1:72729987-72730006 Msa1036390:CDS 45.0%
GGTGAAGGTGGAGAAGAAAA+TGG + chr7_1:72729999-72730018 Msa1036390:CDS 45.0%
AGAAACTCACACACGAGTAG+AGG + chr7_1:72730066-72730085 Msa1036390:intron 45.0%
! GAGGTTAGTTCATCCAAAGC+TGG - chr7_1:72730433-72730452 None:intergenic 45.0%
GTCGGTGATATGATGAGAAG+AGG - chr7_1:72730618-72730637 None:intergenic 45.0%
TAAGGAGTAGAAAGGGACGA+GGG - chr7_1:72730983-72731002 None:intergenic 45.0%
TTAAGGAGTAGAAAGGGACG+AGG - chr7_1:72730984-72731003 None:intergenic 45.0%
TGGCATCACAGTCCATATCA+AGG + chr7_1:72731493-72731512 Msa1036390:CDS 45.0%
GAAGTGCAGCAACACTTCAA+GGG + chr7_1:72731542-72731561 Msa1036390:CDS 45.0%
AAGTGCAGCAACACTTCAAG+GGG + chr7_1:72731543-72731562 Msa1036390:CDS 45.0%
ATCTCTCATTTGGCGACAGT+CGG + chr7_1:72731691-72731710 Msa1036390:intron 45.0%
GTTGTCTGATCAAGATCGGA+CGG + chr7_1:72731721-72731740 Msa1036390:CDS 45.0%
AACAAACAGTCCCGGAACTT+AGG - chr7_1:72732356-72732375 None:intergenic 45.0%
CTTTAGGTGGTGATTCTCAC+TGG + chr7_1:72732589-72732608 Msa1036390:intron 45.0%
GCGTCGAGCATACGATATTA+TGG - chr7_1:72732641-72732660 None:intergenic 45.0%
ATATCGTATGCTCGACGCAA+AGG + chr7_1:72732643-72732662 Msa1036390:CDS 45.0%
TGAAGATCGATGCACCTTGT+TGG + chr7_1:72732688-72732707 Msa1036390:three_prime_UTR 45.0%
GAAGATCGATGCACCTTGTT+GGG + chr7_1:72732689-72732708 Msa1036390:three_prime_UTR 45.0%
TATTCTGGTACCTCCCAACA+AGG - chr7_1:72732705-72732724 None:intergenic 45.0%
TAGGTGACGAGATGATGTCT+CGG + chr7_1:72732867-72732886 Msa1036390:intron 45.0%
!!! TTTTTTCTTAAAAAAAAAAT+AGG + chr7_1:72732848-72732867 Msa1036390:intron 5.0%
!! GGCTCTTGCTAGTTCTGAAG+TGG + chr7_1:72729373-72729392 Msa1036390:CDS 50.0%
CCAGCAACACTTACCTTGAG+TGG - chr7_1:72729942-72729961 None:intergenic 50.0%
! CCACTCAAGGTAAGTGTTGC+TGG + chr7_1:72729939-72729958 Msa1036390:CDS 50.0%
TCACACACGAGTAGAGGAAC+CGG + chr7_1:72730072-72730091 Msa1036390:intron 50.0%
CCGTAATAAGGTTCGAGTCC+CGG - chr7_1:72730094-72730113 None:intergenic 50.0%
CCGGGACTCGAACCTTATTA+CGG + chr7_1:72730091-72730110 Msa1036390:intron 50.0%
ACTCTCTTGTCCGTGCATCA+AGG - chr7_1:72730393-72730412 None:intergenic 50.0%
TGATGCACGGACAAGAGAGT+TGG + chr7_1:72730393-72730412 Msa1036390:CDS 50.0%
! GACTGCTGCTTATCCAGCTT+TGG + chr7_1:72730417-72730436 Msa1036390:CDS 50.0%
TAGCCGCCATCCTAACCATT+TGG - chr7_1:72730721-72730740 None:intergenic 50.0%
ATCAGAGCTACTTGAGGGAG+AGG - chr7_1:72731464-72731483 None:intergenic 50.0%
!! TCTCCCTCAAGTAGCTCTGA+TGG + chr7_1:72731463-72731482 Msa1036390:CDS 50.0%
GGACCATCAGAGCTACTTGA+GGG - chr7_1:72731469-72731488 None:intergenic 50.0%
!! GTAGCTCTGATGGTCCCAAT+TGG + chr7_1:72731473-72731492 Msa1036390:CDS 50.0%
! GGAAGTGCAGCAACACTTCA+AGG + chr7_1:72731541-72731560 Msa1036390:CDS 50.0%
GGTGGTGATTCTCACTGGAA+TGG + chr7_1:72732594-72732613 Msa1036390:intron 50.0%
!! CTCGACGCAAAGGTCTTGTT+GGG + chr7_1:72732653-72732672 Msa1036390:CDS 50.0%
CACACACGAGTAGAGGAACC+GGG + chr7_1:72730073-72730092 Msa1036390:intron 55.0%
GGGACCATCAGAGCTACTTG+AGG - chr7_1:72731470-72731489 None:intergenic 55.0%
! GCTCGACGCAAAGGTCTTGT+TGG + chr7_1:72732652-72732671 Msa1036390:CDS 55.0%
GATCGATGCACCTTGTTGGG+AGG + chr7_1:72732692-72732711 Msa1036390:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 72729371 72733095 72729371 ID=Msa1036390;Name=Msa1036390
chr7_1 mRNA 72729371 72733095 72729371 ID=Msa1036390-mRNA-1;Parent=Msa1036390;Name=Msa1036390-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.75|0.84|0.92|0.91|0.84|13|258|392
chr7_1 exon 72729371 72729592 72729371 ID=Msa1036390-mRNA-1:exon:17770;Parent=Msa1036390-mRNA-1
chr7_1 exon 72729708 72729737 72729708 ID=Msa1036390-mRNA-1:exon:17771;Parent=Msa1036390-mRNA-1
chr7_1 exon 72729873 72730020 72729873 ID=Msa1036390-mRNA-1:exon:17772;Parent=Msa1036390-mRNA-1
chr7_1 exon 72730335 72730456 72730335 ID=Msa1036390-mRNA-1:exon:17773;Parent=Msa1036390-mRNA-1
chr7_1 exon 72731040 72731114 72731040 ID=Msa1036390-mRNA-1:exon:17774;Parent=Msa1036390-mRNA-1
chr7_1 exon 72731379 72731600 72731379 ID=Msa1036390-mRNA-1:exon:17775;Parent=Msa1036390-mRNA-1
chr7_1 exon 72731710 72731742 72731710 ID=Msa1036390-mRNA-1:exon:17776;Parent=Msa1036390-mRNA-1
chr7_1 exon 72731851 72731895 72731851 ID=Msa1036390-mRNA-1:exon:17777;Parent=Msa1036390-mRNA-1
chr7_1 exon 72731979 72732023 72731979 ID=Msa1036390-mRNA-1:exon:17778;Parent=Msa1036390-mRNA-1
chr7_1 exon 72732230 72732259 72732230 ID=Msa1036390-mRNA-1:exon:17779;Parent=Msa1036390-mRNA-1
chr7_1 exon 72732342 72732461 72732342 ID=Msa1036390-mRNA-1:exon:17780;Parent=Msa1036390-mRNA-1
chr7_1 exon 72732595 72732713 72732595 ID=Msa1036390-mRNA-1:exon:17781;Parent=Msa1036390-mRNA-1
chr7_1 exon 72732870 72733095 72732870 ID=Msa1036390-mRNA-1:exon:17782;Parent=Msa1036390-mRNA-1
chr7_1 CDS 72729371 72729592 72729371 ID=Msa1036390-mRNA-1:cds;Parent=Msa1036390-mRNA-1
chr7_1 CDS 72729708 72729737 72729708 ID=Msa1036390-mRNA-1:cds;Parent=Msa1036390-mRNA-1
chr7_1 CDS 72729873 72730020 72729873 ID=Msa1036390-mRNA-1:cds;Parent=Msa1036390-mRNA-1
chr7_1 CDS 72730335 72730456 72730335 ID=Msa1036390-mRNA-1:cds;Parent=Msa1036390-mRNA-1
chr7_1 CDS 72731040 72731114 72731040 ID=Msa1036390-mRNA-1:cds;Parent=Msa1036390-mRNA-1
chr7_1 CDS 72731379 72731600 72731379 ID=Msa1036390-mRNA-1:cds;Parent=Msa1036390-mRNA-1
chr7_1 CDS 72731710 72731742 72731710 ID=Msa1036390-mRNA-1:cds;Parent=Msa1036390-mRNA-1
chr7_1 CDS 72731851 72731895 72731851 ID=Msa1036390-mRNA-1:cds;Parent=Msa1036390-mRNA-1
chr7_1 CDS 72731979 72732023 72731979 ID=Msa1036390-mRNA-1:cds;Parent=Msa1036390-mRNA-1
chr7_1 CDS 72732230 72732259 72732230 ID=Msa1036390-mRNA-1:cds;Parent=Msa1036390-mRNA-1
chr7_1 CDS 72732342 72732461 72732342 ID=Msa1036390-mRNA-1:cds;Parent=Msa1036390-mRNA-1
chr7_1 CDS 72732595 72732681 72732595 ID=Msa1036390-mRNA-1:cds;Parent=Msa1036390-mRNA-1
chr7_1 three_prime_UTR 72732682 72732713 72732682 ID=Msa1036390-mRNA-1:three_prime_utr;Parent=Msa1036390-mRNA-1
chr7_1 three_prime_UTR 72732870 72733095 72732870 ID=Msa1036390-mRNA-1:three_prime_utr;Parent=Msa1036390-mRNA-1
Gene Sequence

>Msa1036390

ATGGCTCTTGCTAGTTCTGAAGTGGAGCTTAAAGTTCAAGCTATGAATAAGAAGAAAACTACTATTTCAAGAAGCTGGATTTTGCTAGACCGTGATGGTAGAGATATAGTATTGGATGTGGATAAGTATGCTATTATGCGTTTGGTTGAAATTCATGCAAGAGATCTTCGAATAATGGATCCTCTTCTTTCATATCCTTCCACCATTCTTGGAAGAGAGAAACACATAAAAGCTATAATCACTGCTGAAGAGGTATTGGTTAGAGACCCAATGGATGATGATGTTGTGCCTGTTGTTGAAGAGCTACGAAGAAGGTTACCACTCAAGGTAAGTGTTGCTGGTCAAGGCCAAGTAGAAGAAGAGTTATGTGTTCAAGAAGGTGAAGGTGGAGAAGAAAATGAATTTCCATTTGAGTTTCGAGCTTTGGAAGTTGTATTGGAGGCAATTTGTAGTTTCCTTGATGCACGGACAAGAGAGTTGGAGACTGCTGCTTATCCAGCTTTGGATGAACTAACCTCTAAGATCAGCAGTCGTAATTTGGATAAAGTGCGAAAATTAAAAAGTGCAATGACTAGGTTGACAAATCGTGTTCACAAGATAAGAGAGGAACTAGAAAACCTACTTGATGATGATGATGACATGGCTGAACTTTATTTATCAAGAAAGATGGCTGTTTCATCCTCTCCCTCAAGTAGCTCTGATGGTCCCAATTGGCATCACAGTCCATATCAAGGTTCAAAAATACACAGATCAAGCAGAGGAAGTGCAGCAACACTTCAAGGGGAGAATGATGTTGAAGAGCTTGAGATGTTACTAGAGTCGGCGTTGAAGTTGTCTGATCAAGATCGGACGGCCTATTTCATACAAATTGATGGAACATTAAATAAATTGACCACGGTGCGAGAGTATATTGATGACACCGAAGATTACATTAACATACAGCTTGATAATCACCGAAATCAACTGATTCAGCTAGAGCTATTCCTAAGTTCCGGGACTGTTTGTTTATCAATATATTCATTGGTAGCTGCAATATTTGGTATGAACATTCCATATACATGGAAAGAAGGTCACGCATATGTATTTAAATGGGTGGTGATTCTCACTGGAATGGTTTGTGGAACCTTCTTTTTGTCCATAATATCGTATGCTCGACGCAAAGGTCTTGTTGGGTCTTGA

Protein sequence

>Msa1036390

MALASSEVELKVQAMNKKKTTISRSWILLDRDGRDIVLDVDKYAIMRLVEIHARDLRIMDPLLSYPSTILGREKHIKAIITAEEVLVRDPMDDDVVPVVEELRRRLPLKVSVAGQGQVEEELCVQEGEGGEENEFPFEFRALEVVLEAICSFLDARTRELETAAYPALDELTSKISSRNLDKVRKLKSAMTRLTNRVHKIREELENLLDDDDDMAELYLSRKMAVSSSPSSSSDGPNWHHSPYQGSKIHRSSRGSAATLQGENDVEELEMLLESALKLSDQDRTAYFIQIDGTLNKLTTVREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAAIFGMNIPYTWKEGHAYVFKWVVILTGMVCGTFFLSIISYARRKGLVGS*