AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0457880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0457880 MtrunA17_Chr3g0086601 93.525 278 13 2 1 274 1 277 8.57e-180 495
Msa0457880 MtrunA17_Chr6g0470101 47.739 199 101 2 73 271 92 287 1.18e-54 180
Msa0457880 MtrunA17_Chr5g0398991 43.114 167 92 2 89 252 71 237 9.05e-40 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0457880 AT4G18975.3 60.967 269 95 2 16 274 18 286 1.61e-115 333
Msa0457880 AT4G18975.4 60.967 269 95 2 16 274 18 286 1.61e-115 333
Msa0457880 AT4G18975.1 60.967 269 95 2 16 274 18 286 1.61e-115 333
Msa0457880 AT4G18975.2 72.512 211 58 0 64 274 49 259 1.97e-114 330
Msa0457880 AT4G21190.1 45.729 199 107 1 72 269 44 242 1.37e-54 179
Msa0457880 AT1G04590.1 34.685 222 143 2 32 251 91 312 9.06e-38 137
Msa0457880 AT1G04590.2 34.667 225 142 3 32 251 91 315 3.60e-36 133

Find 124 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGAATATACTTCCATTTA+AGG 0.114121 3_3:-53064260 None:intergenic
GAATCAAGGAATTGAATTTA+AGG 0.209549 3_3:+53064424 Msa0457880:three_prime_UTR
ATTATGAATTACATTGAAAT+TGG 0.230492 3_3:+53064329 Msa0457880:exon
TGTTATAGGCATTGTTGTTC+TGG 0.236524 3_3:-53059737 None:intergenic
ACTTCTTCTGGCATTTGATA+TGG 0.248815 3_3:+53063632 Msa0457880:CDS
AATGAGAAAGAGGCTGTTTA+TGG 0.250949 3_3:+53062773 Msa0457880:CDS
TAAACAGCCTCTTTCTCATT+AGG 0.256749 3_3:-53062770 None:intergenic
GGTTATATTATTATCGCGTC+TGG 0.262263 3_3:-53059669 None:intergenic
ATTGAGGAAACAATTGTTAT+AGG 0.284366 3_3:-53059751 None:intergenic
GATACCTCTATAATCTTATC+TGG 0.315429 3_3:-53063771 None:intergenic
TAAAACGATATGGCCTTAAA+TGG 0.324080 3_3:+53064247 Msa0457880:CDS
GCAGATGACAAGAATTTATT+CGG 0.331283 3_3:-53059898 None:intergenic
TAAATAACAAAGAATCAAAT+TGG 0.336339 3_3:-53064551 None:intergenic
GTTTGATGCACACTGCAATT+TGG 0.341337 3_3:-53059690 None:intergenic
CCAAGAAGAGAAAAGAAAAT+TGG 0.348976 3_3:+53064221 Msa0457880:CDS
AAACAGCCTCTTTCTCATTA+GGG 0.352186 3_3:-53062769 None:intergenic
AATCAAGGAATTGAATTTAA+GGG 0.353038 3_3:+53064425 Msa0457880:three_prime_UTR
CCCCGCAATTCATCACAAAT+TGG 0.357059 3_3:-53059461 None:intergenic
CGACCCGACAACAACTTTGC+AGG 0.366111 3_3:-53060051 None:intergenic
ACCAATTTGTGATGAATTGC+GGG 0.367192 3_3:+53059460 Msa0457880:five_prime_UTR
AACATACGACACACTTCTTC+TGG 0.373920 3_3:+53063620 Msa0457880:CDS
AAGAATTCAAGTTACGCAAT+TGG 0.375492 3_3:-53059307 None:intergenic
GAAATTCATGTGCGTATTAG+AGG 0.378117 3_3:+53064729 Msa0457880:three_prime_UTR
TTGATTCTTTGTTATTTATC+CGG 0.378467 3_3:+53064556 Msa0457880:three_prime_UTR
TTTCTAATCTTCTAGTTCTC+AGG 0.378756 3_3:-53064500 None:intergenic
TGCAGACATGGAGGAGTTGC+GGG 0.383431 3_3:+53064143 Msa0457880:CDS
TAACAAGAGTGAGTGCCTTT+TGG 0.386854 3_3:-53060276 None:intergenic
GTAAGATAGAACACCACTTA+TGG 0.398058 3_3:+53060227 Msa0457880:CDS
TACTGAACTCAACAACTTAC+CGG 0.403440 3_3:+53059213 Msa0457880:five_prime_UTR
TTACCAAACATGTCCTTTGT+AGG 0.406684 3_3:-53059777 None:intergenic
AGAATTCAAGTTACGCAATT+GGG 0.410699 3_3:-53059306 None:intergenic
GCCTTGGCTACTGCAATCAA+TGG 0.411627 3_3:-53062833 None:intergenic
TAGTTCAACTCATGGTTGAT+AGG 0.417109 3_3:-53064593 None:intergenic
ATCTCCTGCAAAGTTGTTGT+CGG 0.422668 3_3:+53060047 Msa0457880:CDS
TTCCTGACAGTATCTTCATC+AGG 0.423781 3_3:-53064171 None:intergenic
AAATTGGTGATAAAACGATA+TGG 0.428725 3_3:+53064237 Msa0457880:CDS
TTTATGGAGCGTTAGACAAA+TGG 0.429545 3_3:+53062789 Msa0457880:CDS
AATCTCTTCTTTGCCATAAG+TGG 0.435760 3_3:-53060240 None:intergenic
GAATTGCGGGGCGCTTATAG+TGG 0.446511 3_3:+53059473 Msa0457880:five_prime_UTR
TGGAAGTATATTCACTTCAA+TGG 0.460351 3_3:+53064267 Msa0457880:CDS
CGTTAGACAAATGGACGGCT+TGG 0.463824 3_3:+53062798 Msa0457880:CDS
ACTCCTACAAAGGACATGTT+TGG 0.467437 3_3:+53059774 Msa0457880:CDS
CCATGAGTTGAACTACAGTT+GGG 0.467441 3_3:+53064601 Msa0457880:three_prime_UTR
CGTATTAGAGGTAATCTTGT+TGG 0.471037 3_3:+53064741 Msa0457880:three_prime_UTR
TATTCACTTCAATGGTGAAC+GGG 0.477233 3_3:+53064275 Msa0457880:CDS
ATTCTGCGGTTGTTGAATCA+AGG 0.480597 3_3:+53064410 Msa0457880:three_prime_UTR
TCAATCTGAGGGGTTATTTG+CGG 0.481092 3_3:+53059411 Msa0457880:five_prime_UTR
AGAAGAGATTCGGCTCAGTC+TGG 0.484060 3_3:+53060253 Msa0457880:CDS
AAAGGACAAGGAGCAACAAT+GGG 0.484217 3_3:+53063597 Msa0457880:CDS
TTGAATCGACCGGTAGTACC+CGG 0.485321 3_3:+53064469 Msa0457880:three_prime_UTR
GTTAGACAAATGGACGGCTT+GGG 0.486994 3_3:+53062799 Msa0457880:CDS
TCCTTTGCTCAACATCCACT+TGG 0.488600 3_3:-53063580 None:intergenic
ATAGGTTGCTAAACTCGAAC+CGG 0.489926 3_3:-53064575 None:intergenic
TTCGGCTCAGTCTGGCCAAA+AGG 0.492893 3_3:+53060261 Msa0457880:CDS
ACCATGAGTTGAACTACAGT+TGG 0.492990 3_3:+53064600 Msa0457880:three_prime_UTR
ATGGTGGAAGCATACTAAAA+TGG 0.498665 3_3:+53059639 Msa0457880:five_prime_UTR
CCCATTGATTGCAGTAGCCA+AGG 0.498991 3_3:+53062832 Msa0457880:CDS
CGCAATTGGGTAAGTTGCGG+TGG 0.504709 3_3:-53059293 None:intergenic
ACAGAACCACCACCAACATT+CGG 0.506781 3_3:-53060083 None:intergenic
ATTCTGCCTCATCTACTCTC+TGG 0.509574 3_3:-53063656 None:intergenic
GTTATATTATTATCGCGTCT+GGG 0.510708 3_3:-53059668 None:intergenic
CCTCTATAATCTTATCTGGC+AGG 0.511717 3_3:-53063767 None:intergenic
CTTATGGCAAAGAAGAGATT+CGG 0.511985 3_3:+53060243 Msa0457880:CDS
ATTCTACTATGAAAACAAGT+TGG 0.512457 3_3:+53059169 None:intergenic
GCAAGTGCCTTTAGAAAACT+AGG 0.517052 3_3:+53064198 Msa0457880:CDS
GAGACGAACCCGGGTACTAC+CGG 0.519355 3_3:-53064478 None:intergenic
TGAACTCCCTAATGAGAAAG+AGG 0.519498 3_3:+53062763 Msa0457880:CDS
TCTCCTGCAAAGTTGTTGTC+GGG 0.521704 3_3:+53060048 Msa0457880:CDS
TGTCCTTTGTAGGAGTATTG+AGG 0.527032 3_3:-53059767 None:intergenic
TAGTTCTCAGGAGACGAACC+CGG 0.529722 3_3:-53064488 None:intergenic
CCTTGGCTACTGCAATCAAT+GGG 0.529848 3_3:-53062832 None:intergenic
CAAAGGACAAGGAGCAACAA+TGG 0.533105 3_3:+53063596 Msa0457880:CDS
TTGGTTTGAATTCAATCTGA+GGG 0.534419 3_3:+53059400 Msa0457880:five_prime_UTR
AACCTGATGAAGATACTGTC+AGG 0.534950 3_3:+53064169 Msa0457880:CDS
TTTCCTCAATACTCCTACAA+AGG 0.545239 3_3:+53059764 Msa0457880:CDS
CCCAACTGTAGTTCAACTCA+TGG 0.549143 3_3:-53064601 None:intergenic
TTGCAGACATGGAGGAGTTG+CGG 0.549472 3_3:+53064142 Msa0457880:CDS
CCTGCCAGATAAGATTATAG+AGG 0.550017 3_3:+53063767 Msa0457880:CDS
TCTTAGACACAGAGCGCATG+TGG 0.553949 3_3:-53063704 None:intergenic
TGCAATAAGTATTACTCCGA+AGG 0.554372 3_3:+53059918 Msa0457880:CDS
CTTAAGGAAAAGGGGTCAGT+GGG 0.554603 3_3:+53062865 Msa0457880:CDS
AGTTCTCAGGAGACGAACCC+GGG 0.557791 3_3:-53064487 None:intergenic
TCTTAAGGAAAAGGGGTCAG+TGG 0.563756 3_3:+53062864 Msa0457880:CDS
AGTTCAGGTATTTGCAGACA+TGG 0.565434 3_3:+53064131 Msa0457880:intron
ACTCAGCCAGAAACTCATCC+AGG 0.565581 3_3:+53059245 Msa0457880:five_prime_UTR
TGGTGGTGGTTCTGTTGAGA+AGG 0.568095 3_3:+53060091 Msa0457880:CDS
TGAAGATACTGTCAGGAAAG+TGG 0.569216 3_3:+53064176 Msa0457880:CDS
ATCTGAGGGGTTATTTGCGG+TGG 0.571300 3_3:+53059414 Msa0457880:five_prime_UTR
TTTGTTAAGGTTGAATCGAC+CGG 0.576031 3_3:+53064459 Msa0457880:three_prime_UTR
AATTGTCTTGTTGCATTCTG+CGG 0.578367 3_3:+53064396 Msa0457880:three_prime_UTR
ATTGGTTTGAATTCAATCTG+AGG 0.579754 3_3:+53059399 Msa0457880:five_prime_UTR
GAAGCATACTAAAATGGCGG+AGG 0.580051 3_3:+53059645 Msa0457880:five_prime_UTR
CACAACCCCAAAGTTAAAAG+TGG 0.588168 3_3:+53064626 Msa0457880:three_prime_UTR
TGAAAGTTAGAACACATGCA+TGG 0.592856 3_3:+53064298 Msa0457880:CDS
ATATTCACTTCAATGGTGAA+CGG 0.595717 3_3:+53064274 Msa0457880:CDS
GAAAGTTAGAACACATGCAT+GGG 0.598805 3_3:+53064299 Msa0457880:CDS
GACCAATTTGTGATGAATTG+CGG 0.599616 3_3:+53059459 Msa0457880:five_prime_UTR
TATACTTTCAGTTAGCCAAG+TGG 0.600899 3_3:+53063565 Msa0457880:intron
AATTCATCACAAATTGGTCA+TGG 0.608598 3_3:-53059455 None:intergenic
AAACTGAGTCCGAATGTTGG+TGG 0.610964 3_3:+53060074 Msa0457880:CDS
TATGGACCAGAGAGTAGATG+AGG 0.617959 3_3:+53063650 Msa0457880:CDS
TTACGCAATTGGGTAAGTTG+CGG 0.618346 3_3:-53059296 None:intergenic
TTGCGGGGCGCTTATAGTGG+AGG 0.618397 3_3:+53059476 Msa0457880:five_prime_UTR
CTGAGTCCGAATGTTGGTGG+TGG 0.619770 3_3:+53060077 Msa0457880:CDS
GTGAGTCTATAATGCAACAA+TGG 0.622067 3_3:-53064529 None:intergenic
TAGATGAGGCAGAATCCTTG+TGG 0.623540 3_3:+53063664 Msa0457880:CDS
TCGAAACTGAGTCCGAATGT+TGG 0.627595 3_3:+53060071 Msa0457880:CDS
GCCAAGTGGATGTTGAGCAA+AGG 0.633935 3_3:+53063579 Msa0457880:CDS
TGAATCGACCGGTAGTACCC+GGG 0.634045 3_3:+53064470 Msa0457880:three_prime_UTR
TGGATGTTGAGCAAAGGACA+AGG 0.634699 3_3:+53063585 Msa0457880:CDS
GTGGAAATGAATACGAGAGA+AGG 0.638530 3_3:-53059274 None:intergenic
GTAGCGCTATAGCACAACAT+TGG 0.640251 3_3:+53059381 Msa0457880:five_prime_UTR
TGGAGCGTTAGACAAATGGA+CGG 0.642693 3_3:+53062793 Msa0457880:CDS
CATGAGTTGAACTACAGTTG+GGG 0.642703 3_3:+53064602 Msa0457880:three_prime_UTR
TAGTTGTTGGACAGGTACAG+TGG 0.644293 3_3:+53059616 Msa0457880:intron
TGGTTTGAATTCAATCTGAG+GGG 0.663204 3_3:+53059401 Msa0457880:five_prime_UTR
TGTTGGACAGGTACAGTGGA+TGG 0.665071 3_3:+53059620 Msa0457880:intron
ATGTATAATCATATTCCACA+AGG 0.667188 3_3:-53063679 None:intergenic
TCAGGTATTTGCAGACATGG+AGG 0.671598 3_3:+53064134 Msa0457880:intron
CCAATTTGTGATGAATTGCG+GGG 0.678308 3_3:+53059461 Msa0457880:five_prime_UTR
CTTAGACACAGAGCGCATGT+GGG 0.683166 3_3:-53063703 None:intergenic
GTGGAAGCATACTAAAATGG+CGG 0.683394 3_3:+53059642 Msa0457880:five_prime_UTR
ATGAGTTGAACTACAGTTGG+GGG 0.690292 3_3:+53064603 Msa0457880:three_prime_UTR
TGGACAGGTACAGTGGATGG+TGG 0.704427 3_3:+53059623 Msa0457880:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTAAATGATAAATTTATTTT+TGG + chr3_3:53064704-53064723 Msa0457880:three_prime_UTR 10.0%
!! TAAAATTAAATAGTGAGAAA+AGG - chr3_3:53061366-53061385 None:intergenic 15.0%
!! TTTAAAAATCTTAAGGAAAA+GGG + chr3_3:53062856-53062875 Msa0457880:CDS 15.0%
!!! TATTTTATGTAGAACATATA+TGG + chr3_3:53063166-53063185 Msa0457880:intron 15.0%
!! ATTATGAATTACATTGAAAT+TGG + chr3_3:53064329-53064348 Msa0457880:exon 15.0%
!! TAAATAACAAAGAATCAAAT+TGG - chr3_3:53064554-53064573 None:intergenic 15.0%
!!! TGTGAATAATCAGTTTTATA+TGG + chr3_3:53060174-53060193 Msa0457880:intron 20.0%
!! TTAATAGAGCTAATAATACA+TGG - chr3_3:53060838-53060857 None:intergenic 20.0%
!!! TACAATGTTATTTACTACAT+CGG - chr3_3:53060933-53060952 None:intergenic 20.0%
!!! TAGTAGATATATTTTTTTGC+AGG + chr3_3:53061309-53061328 Msa0457880:intron 20.0%
!!! AGTAGATATATTTTTTTGCA+GGG + chr3_3:53061310-53061329 Msa0457880:intron 20.0%
!! TGATTAAAAAGTTTCTGATT+TGG + chr3_3:53061416-53061435 Msa0457880:intron 20.0%
!! ATTTATCACTAAAATCTCAT+TGG - chr3_3:53061629-53061648 None:intergenic 20.0%
!!! AATGAGATTTTAGTGATAAA+TGG + chr3_3:53061628-53061647 Msa0457880:intron 20.0%
!!! TTGTACTATTGTTATTAACT+GGG + chr3_3:53062452-53062471 Msa0457880:intron 20.0%
!! ATGTTGTAATGTAAAAAAAG+AGG + chr3_3:53062528-53062547 Msa0457880:intron 20.0%
!! TATAAAGAAAGCTAATTTAC+TGG - chr3_3:53062566-53062585 None:intergenic 20.0%
!!! CTTTAAAAATCTTAAGGAAA+AGG + chr3_3:53062855-53062874 Msa0457880:CDS 20.0%
!! TTAAAAATCTTAAGGAAAAG+GGG + chr3_3:53062857-53062876 Msa0457880:CDS 20.0%
!! TTCTCTTTAAATTTACAAGT+CGG - chr3_3:53062962-53062981 None:intergenic 20.0%
!! ATAAAAGTTGAAAGAACATT+TGG - chr3_3:53063232-53063251 None:intergenic 20.0%
!!! AAATGTTCTTTCAACTTTTA+TGG + chr3_3:53063231-53063250 Msa0457880:intron 20.0%
!! AATAAACATGTTAATATGGA+TGG - chr3_3:53063353-53063372 None:intergenic 20.0%
!! AAGGAATAAACATGTTAATA+TGG - chr3_3:53063357-53063376 None:intergenic 20.0%
!! AATTAATCTCAGTACATATT+TGG + chr3_3:53063831-53063850 Msa0457880:intron 20.0%
!! AATCAAGGAATTGAATTTAA+GGG + chr3_3:53064425-53064444 Msa0457880:three_prime_UTR 20.0%
!!! TTGATTCTTTGTTATTTATC+CGG + chr3_3:53064556-53064575 Msa0457880:three_prime_UTR 20.0%
!! AGAATCAATGTTATTGATTG+TGG - chr3_3:53059521-53059540 None:intergenic 25.0%
!!! ATGAATTGAGTTTTAGTTGT+TGG + chr3_3:53059603-53059622 Msa0457880:intron 25.0%
! ATTGAGGAAACAATTGTTAT+AGG - chr3_3:53059754-53059773 None:intergenic 25.0%
!!! TTCTGTTTTTAAAAAATCGC+AGG + chr3_3:53060016-53060035 Msa0457880:intron 25.0%
! TTTATCTTCTAATGTGTGTT+TGG + chr3_3:53060148-53060167 Msa0457880:intron 25.0%
!! TTTTATATGGAATGCAGAAA+AGG + chr3_3:53060187-53060206 Msa0457880:intron 25.0%
! TTTATATGGAATGCAGAAAA+GGG + chr3_3:53060188-53060207 Msa0457880:intron 25.0%
! GAATGGTTATATTAAACAGT+AGG - chr3_3:53060571-53060590 None:intergenic 25.0%
! GATAATAATGCTTTCTTGAA+TGG - chr3_3:53060588-53060607 None:intergenic 25.0%
! TTATCATCAATGTGATGAAT+AGG + chr3_3:53060603-53060622 Msa0457880:intron 25.0%
! GATGTAGTAAATAACATTGT+AGG + chr3_3:53060932-53060951 Msa0457880:intron 25.0%
!!! AACAGCTTTAGGATTATATA+TGG + chr3_3:53061207-53061226 Msa0457880:intron 25.0%
!!! GATGCTGTTTTTAATTAACA+CGG - chr3_3:53061265-53061284 None:intergenic 25.0%
!! TAAATGTTTTGTCATATGTC+AGG - chr3_3:53061563-53061582 None:intergenic 25.0%
!!! ATCAGATGGTTTTAGAATAT+TGG - chr3_3:53062161-53062180 None:intergenic 25.0%
! AGAGTTATTTAATACAAGGA+TGG + chr3_3:53062229-53062248 Msa0457880:intron 25.0%
!! GTTGTACTATTGTTATTAAC+TGG + chr3_3:53062451-53062470 Msa0457880:intron 25.0%
! ATTCAAGCATATATTGCAAA+AGG - chr3_3:53062510-53062529 None:intergenic 25.0%
!! TTGCTATGTTGAGTTAATTT+TGG + chr3_3:53062706-53062725 Msa0457880:intron 25.0%
! ATAAGTACTTAAATGCAAAC+TGG - chr3_3:53063259-53063278 None:intergenic 25.0%
! TATATCACACATCTTAGAAT+TGG + chr3_3:53063449-53063468 Msa0457880:intron 25.0%
! AATTGACCAAGGTTATAAAT+CGG - chr3_3:53063510-53063529 None:intergenic 25.0%
! ATGTATAATCATATTCCACA+AGG - chr3_3:53063682-53063701 None:intergenic 25.0%
!!! TATAGAGGTATCTCTTTTTT+AGG + chr3_3:53063782-53063801 Msa0457880:intron 25.0%
!! AAATTGGTGATAAAACGATA+TGG + chr3_3:53064237-53064256 Msa0457880:CDS 25.0%
! AGTGAATATACTTCCATTTA+AGG - chr3_3:53064263-53064282 None:intergenic 25.0%
! GAATCAAGGAATTGAATTTA+AGG + chr3_3:53064424-53064443 Msa0457880:three_prime_UTR 25.0%
! AGAATTCAAGTTACGCAATT+GGG - chr3_3:53059309-53059328 None:intergenic 30.0%
! AAGAATTCAAGTTACGCAAT+TGG - chr3_3:53059310-53059329 None:intergenic 30.0%
!! ATTGGTTTGAATTCAATCTG+AGG + chr3_3:53059399-53059418 Msa0457880:five_prime_UTR 30.0%
! TTGGTTTGAATTCAATCTGA+GGG + chr3_3:53059400-53059419 Msa0457880:five_prime_UTR 30.0%
AATTCATCACAAATTGGTCA+TGG - chr3_3:53059458-53059477 None:intergenic 30.0%
! TCAATGTTATTGATTGTGGA+TGG - chr3_3:53059517-53059536 None:intergenic 30.0%
! CAAATTATTGGGAGATTTTG+AGG - chr3_3:53059567-53059586 None:intergenic 30.0%
CTCAAAATCTCCCAATAATT+TGG + chr3_3:53059565-53059584 Msa0457880:intron 30.0%
TCCATCTAGACCAAATTATT+GGG - chr3_3:53059578-53059597 None:intergenic 30.0%
TTCCATCTAGACCAAATTAT+TGG - chr3_3:53059579-53059598 None:intergenic 30.0%
GTTATATTATTATCGCGTCT+GGG - chr3_3:53059671-53059690 None:intergenic 30.0%
TCTGAGAGAAAAGAAGATAA+GGG - chr3_3:53059873-53059892 None:intergenic 30.0%
GCAGATGACAAGAATTTATT+CGG - chr3_3:53059901-53059920 None:intergenic 30.0%
TGAAGCAATTGTTATACCTT+CGG - chr3_3:53059937-53059956 None:intergenic 30.0%
GAGAAGGATAAGTATGTTAT+TGG + chr3_3:53060107-53060126 Msa0457880:intron 30.0%
AGAAAAGGGAAGAAGAAAAA+AGG + chr3_3:53060202-53060221 Msa0457880:intron 30.0%
GAAAAGGGAAGAAGAAAAAA+GGG + chr3_3:53060203-53060222 Msa0457880:intron 30.0%
AAAAGGGAAGAAGAAAAAAG+GGG + chr3_3:53060204-53060223 Msa0457880:CDS 30.0%
AAATCAAATAGAGTCGTGTA+TGG - chr3_3:53060502-53060521 None:intergenic 30.0%
AGTTAATCAAATTCCAGGTT+GGG - chr3_3:53060700-53060719 None:intergenic 30.0%
TAATAATACATGGATTTCCG+TGG - chr3_3:53060828-53060847 None:intergenic 30.0%
TCAAACTTAGATTTCATAGC+TGG + chr3_3:53060862-53060881 Msa0457880:intron 30.0%
!! ATTATGGTGCTACAAGATTA+AGG + chr3_3:53060886-53060905 Msa0457880:intron 30.0%
ATGCAGACTATTTCAAATTC+TGG - chr3_3:53060976-53060995 None:intergenic 30.0%
! GAATTTGAAATAGTCTGCAT+AGG + chr3_3:53060976-53060995 Msa0457880:intron 30.0%
!!! CATAGGATGAATGGATTTTT+TGG + chr3_3:53060993-53061012 Msa0457880:intron 30.0%
!!! GATTTTTTGGAAGGAGTTAT+AGG + chr3_3:53061006-53061025 Msa0457880:intron 30.0%
GACAAAGCCAATGAATTAAA+TGG + chr3_3:53061069-53061088 Msa0457880:intron 30.0%
AAAGCTGTTTGTATCACTTT+AGG - chr3_3:53061196-53061215 None:intergenic 30.0%
AAAGTGATACAAACAGCTTT+AGG + chr3_3:53061196-53061215 Msa0457880:intron 30.0%
AAAGGCTCTTCAAACATATT+GGG - chr3_3:53061348-53061367 None:intergenic 30.0%
AAAAGGCTCTTCAAACATAT+TGG - chr3_3:53061349-53061368 None:intergenic 30.0%
ATGAAGAAAATTAGTGTGTG+TGG + chr3_3:53061440-53061459 Msa0457880:intron 30.0%
! ATTCGCTGTTAAACAACTTT+TGG + chr3_3:53061530-53061549 Msa0457880:intron 30.0%
!! GTTAAACAACTTTTGGTGAT+TGG + chr3_3:53061537-53061556 Msa0457880:intron 30.0%
! GATTAACATTTTGTTGCGAA+TGG - chr3_3:53061769-53061788 None:intergenic 30.0%
AATGTTAATCTTGCCTAGTT+TGG + chr3_3:53061779-53061798 Msa0457880:intron 30.0%
AATGTTAGAAATTGCTGAAG+AGG + chr3_3:53061979-53061998 Msa0457880:intron 30.0%
GAATAGCTATATTCTTAAGC+AGG + chr3_3:53062001-53062020 Msa0457880:intron 30.0%
AATTGTGGTCAAGATTCATT+GGG - chr3_3:53062122-53062141 None:intergenic 30.0%
TAATTGTGGTCAAGATTCAT+TGG - chr3_3:53062123-53062142 None:intergenic 30.0%
GGCAAGAGTTATTTAATACA+AGG + chr3_3:53062225-53062244 Msa0457880:intron 30.0%
! TTAGCTTTCTTTATATCTCG+AGG + chr3_3:53062571-53062590 Msa0457880:intron 30.0%
! TACAATTTTGTATTCGAGTC+AGG - chr3_3:53062605-53062624 None:intergenic 30.0%
!!! CCTTAAGATTTTTAAAGCCT+TGG - chr3_3:53062852-53062871 None:intergenic 30.0%
!! CCAAGGCTTTAAAAATCTTA+AGG + chr3_3:53062849-53062868 Msa0457880:CDS 30.0%
!! CAACAAGTTCTAGAAAATAG+TGG - chr3_3:53062914-53062933 None:intergenic 30.0%
CAATCATTCATTTCATGAGA+AGG - chr3_3:53063085-53063104 None:intergenic 30.0%
TGTAGAACATATATGGTTTG+AGG + chr3_3:53063173-53063192 Msa0457880:intron 30.0%
AACATGTTAATATGGATGGA+TGG - chr3_3:53063349-53063368 None:intergenic 30.0%
!!! TGCATGAGTTTTGACTTTTT+TGG + chr3_3:53063416-53063435 Msa0457880:intron 30.0%
CTAATAATCACAATTGACCA+AGG - chr3_3:53063521-53063540 None:intergenic 30.0%
! TTGGCTAACTGAAAGTATAA+CGG - chr3_3:53063564-53063583 None:intergenic 30.0%
GATACCTCTATAATCTTATC+TGG - chr3_3:53063774-53063793 None:intergenic 30.0%
!!! CTCTTTTTTAGGAATTGTAG+AGG + chr3_3:53063793-53063812 Msa0457880:intron 30.0%
ACTGTTTGATCAAGATCTAA+CGG + chr3_3:53063890-53063909 Msa0457880:intron 30.0%
ACCAAAATATCAAGAGGAAA+TGG - chr3_3:53063967-53063986 None:intergenic 30.0%
TTAAAGTGAAGAGTGATGAA+TGG - chr3_3:53064045-53064064 None:intergenic 30.0%
! CCAATTTTCTTTTCTCTTCT+TGG - chr3_3:53064224-53064243 None:intergenic 30.0%
CCAAGAAGAGAAAAGAAAAT+TGG + chr3_3:53064221-53064240 Msa0457880:CDS 30.0%
! TAAAACGATATGGCCTTAAA+TGG + chr3_3:53064247-53064266 Msa0457880:CDS 30.0%
! TGGAAGTATATTCACTTCAA+TGG + chr3_3:53064267-53064286 Msa0457880:CDS 30.0%
ATATTCACTTCAATGGTGAA+CGG + chr3_3:53064274-53064293 Msa0457880:CDS 30.0%
! GGATTAACATGCTTTTGTTA+AGG + chr3_3:53064446-53064465 Msa0457880:three_prime_UTR 30.0%
!! TTTCTAATCTTCTAGTTCTC+AGG - chr3_3:53064503-53064522 None:intergenic 30.0%
!!! ACATGACCACTTTTAACTTT+GGG - chr3_3:53064635-53064654 None:intergenic 30.0%
!!! AACATGACCACTTTTAACTT+TGG - chr3_3:53064636-53064655 None:intergenic 30.0%
TACTGAACTCAACAACTTAC+CGG + chr3_3:53059213-53059232 Msa0457880:five_prime_UTR 35.0%
AAAAAACCTGGATGAGTTTC+TGG - chr3_3:53059254-53059273 None:intergenic 35.0%
TGGTTTGAATTCAATCTGAG+GGG + chr3_3:53059401-53059420 Msa0457880:five_prime_UTR 35.0%
GACCAATTTGTGATGAATTG+CGG + chr3_3:53059459-53059478 Msa0457880:five_prime_UTR 35.0%
ACCAATTTGTGATGAATTGC+GGG + chr3_3:53059460-53059479 Msa0457880:five_prime_UTR 35.0%
! ATGTTATTGATTGTGGATGG+AGG - chr3_3:53059514-53059533 None:intergenic 35.0%
TCCCAATAATTTGGTCTAGA+TGG + chr3_3:53059574-53059593 Msa0457880:intron 35.0%
!!! TTGAGTTTTAGTTGTTGGAC+AGG + chr3_3:53059608-53059627 Msa0457880:intron 35.0%
! ATGGTGGAAGCATACTAAAA+TGG + chr3_3:53059639-53059658 Msa0457880:five_prime_UTR 35.0%
GGTTATATTATTATCGCGTC+TGG - chr3_3:53059672-53059691 None:intergenic 35.0%
!!! TGTTGTTCTGGTTTTGAGAT+AGG - chr3_3:53059728-53059747 None:intergenic 35.0%
! TGTTATAGGCATTGTTGTTC+TGG - chr3_3:53059740-53059759 None:intergenic 35.0%
TTTCCTCAATACTCCTACAA+AGG + chr3_3:53059764-53059783 Msa0457880:CDS 35.0%
TTACCAAACATGTCCTTTGT+AGG - chr3_3:53059780-53059799 None:intergenic 35.0%
GTCTGAGAGAAAAGAAGATA+AGG - chr3_3:53059874-53059893 None:intergenic 35.0%
TGCAATAAGTATTACTCCGA+AGG + chr3_3:53059918-53059937 Msa0457880:CDS 35.0%
AAAGGGAAGAAGAAAAAAGG+GGG + chr3_3:53060205-53060224 Msa0457880:CDS 35.0%
GTAAGATAGAACACCACTTA+TGG + chr3_3:53060227-53060246 Msa0457880:CDS 35.0%
AATCTCTTCTTTGCCATAAG+TGG - chr3_3:53060243-53060262 None:intergenic 35.0%
CTTATGGCAAAGAAGAGATT+CGG + chr3_3:53060243-53060262 Msa0457880:CDS 35.0%
ACGCAAAAAAAAATGCGTAG+AGG - chr3_3:53060314-53060333 None:intergenic 35.0%
TAGAGATAGATCACACTAAG+TGG + chr3_3:53060415-53060434 Msa0457880:intron 35.0%
GAGTTAATCAAATTCCAGGT+TGG - chr3_3:53060701-53060720 None:intergenic 35.0%
AAGGGAGTTAATCAAATTCC+AGG - chr3_3:53060705-53060724 None:intergenic 35.0%
! TGATTAACTCCCTTTTGAAC+CGG + chr3_3:53060711-53060730 Msa0457880:intron 35.0%
CAATAAACAAGTGCAAATCC+AGG - chr3_3:53060737-53060756 None:intergenic 35.0%
! GAAAGTCTTTTAGCAGGTAA+AGG + chr3_3:53060802-53060821 Msa0457880:intron 35.0%
AGATTTCATAGCTGGCATTA+TGG + chr3_3:53060870-53060889 Msa0457880:intron 35.0%
! GATTAAGGCTTGCTTGATAA+AGG + chr3_3:53060901-53060920 Msa0457880:intron 35.0%
AATAGTCTGCATAGGATGAA+TGG + chr3_3:53060984-53061003 Msa0457880:intron 35.0%
!!! GGATGAATGGATTTTTTGGA+AGG + chr3_3:53060997-53061016 Msa0457880:intron 35.0%
!! TTTTTGGAAGGAGTTATAGG+AGG + chr3_3:53061009-53061028 Msa0457880:intron 35.0%
!! TTTTGGAAGGAGTTATAGGA+GGG + chr3_3:53061010-53061029 Msa0457880:intron 35.0%
TTGAGTAGAAGAATATGCTG+TGG + chr3_3:53061047-53061066 Msa0457880:intron 35.0%
TCCTCAGCCATTTAATTCAT+TGG - chr3_3:53061079-53061098 None:intergenic 35.0%
AGACTCTAGATTTGATCGAA+AGG + chr3_3:53061098-53061117 Msa0457880:intron 35.0%
GACTCTAGATTTGATCGAAA+GGG + chr3_3:53061099-53061118 Msa0457880:intron 35.0%
TTATCCCATCCTTATGAACT+TGG - chr3_3:53061168-53061187 None:intergenic 35.0%
!! TGTTGGTTTCTAGCAGAATA+GGG + chr3_3:53061235-53061254 Msa0457880:intron 35.0%
AAGGCTCTTCAAACATATTG+GGG - chr3_3:53061347-53061366 None:intergenic 35.0%
AAAGTAACATGTATCCCCAA+AGG + chr3_3:53061477-53061496 Msa0457880:intron 35.0%
AACAGCGAATCAGATCAATA+TGG - chr3_3:53061520-53061539 None:intergenic 35.0%
AGTTGGTTGTGCAATGTATT+TGG + chr3_3:53061872-53061891 Msa0457880:intron 35.0%
!! TCAATGTTTGCTGATTCTGA+TGG + chr3_3:53061949-53061968 Msa0457880:intron 35.0%
AGCTATATTCTTAAGCAGGA+CGG + chr3_3:53062005-53062024 Msa0457880:intron 35.0%
ACCACAATTACTAGAGAAGT+GGG + chr3_3:53062133-53062152 Msa0457880:intron 35.0%
! TTCGAGTGAACCATTCTTTT+AGG + chr3_3:53062201-53062220 Msa0457880:intron 35.0%
GAGTTTATACACCACTAAGA+GGG + chr3_3:53062357-53062376 Msa0457880:intron 35.0%
!!! AGTATTGGTTGCAGGATTTT+AGG + chr3_3:53062382-53062401 Msa0457880:intron 35.0%
GTCTACTGTGAATCTTGAAA+TGG + chr3_3:53062732-53062751 Msa0457880:intron 35.0%
AAACAGCCTCTTTCTCATTA+GGG - chr3_3:53062772-53062791 None:intergenic 35.0%
TAAACAGCCTCTTTCTCATT+AGG - chr3_3:53062773-53062792 None:intergenic 35.0%
AATGAGAAAGAGGCTGTTTA+TGG + chr3_3:53062773-53062792 Msa0457880:CDS 35.0%
! TTTATGGAGCGTTAGACAAA+TGG + chr3_3:53062789-53062808 Msa0457880:CDS 35.0%
TTCTGTTACATTACATGTGC+TGG + chr3_3:53063031-53063050 Msa0457880:intron 35.0%
! GAAGGTAATTTTATAGCCCT+GGG - chr3_3:53063067-53063086 None:intergenic 35.0%
! AGAAGGTAATTTTATAGCCC+TGG - chr3_3:53063068-53063087 None:intergenic 35.0%
TATACTTTCAGTTAGCCAAG+TGG + chr3_3:53063565-53063584 Msa0457880:intron 35.0%
ACTTCTTCTGGCATTTGATA+TGG + chr3_3:53063632-53063651 Msa0457880:CDS 35.0%
! TGTCTAAGAGACTGTTTTCT+AGG + chr3_3:53063718-53063737 Msa0457880:CDS 35.0%
!!! AGGAATTGTAGAGGTGTTTT+CGG + chr3_3:53063802-53063821 Msa0457880:intron 35.0%
! TGACTGCAAATTTTCCAACT+GGG - chr3_3:53063860-53063879 None:intergenic 35.0%
! TTGACTGCAAATTTTCCAAC+TGG - chr3_3:53063861-53063880 None:intergenic 35.0%
TAGATCTTGATCAAACAGTC+TGG - chr3_3:53063889-53063908 None:intergenic 35.0%
! GCCATTTCCTCTTGATATTT+TGG + chr3_3:53063963-53063982 Msa0457880:intron 35.0%
ATGCAGACCAAAATATCAAG+AGG - chr3_3:53063973-53063992 None:intergenic 35.0%
ATCTAGATTCCATGCAATCA+GGG - chr3_3:53064022-53064041 None:intergenic 35.0%
GCTATCTTGTATGTAAGTTC+AGG + chr3_3:53064116-53064135 Msa0457880:intron 35.0%
!! TTCTTGGCCTAGTTTTCTAA+AGG - chr3_3:53064208-53064227 None:intergenic 35.0%
TATTCACTTCAATGGTGAAC+GGG + chr3_3:53064275-53064294 Msa0457880:CDS 35.0%
TGAAAGTTAGAACACATGCA+TGG + chr3_3:53064298-53064317 Msa0457880:CDS 35.0%
GAAAGTTAGAACACATGCAT+GGG + chr3_3:53064299-53064318 Msa0457880:CDS 35.0%
! AATTGTCTTGTTGCATTCTG+CGG + chr3_3:53064396-53064415 Msa0457880:three_prime_UTR 35.0%
TTTGTTAAGGTTGAATCGAC+CGG + chr3_3:53064459-53064478 Msa0457880:three_prime_UTR 35.0%
GTGAGTCTATAATGCAACAA+TGG - chr3_3:53064532-53064551 None:intergenic 35.0%
TAGTTCAACTCATGGTTGAT+AGG - chr3_3:53064596-53064615 None:intergenic 35.0%
!!! CATGACCACTTTTAACTTTG+GGG - chr3_3:53064634-53064653 None:intergenic 35.0%
GAAATTCATGTGCGTATTAG+AGG + chr3_3:53064729-53064748 Msa0457880:three_prime_UTR 35.0%
TACGAGAGAAGGAAAAAACC+TGG - chr3_3:53059266-53059285 None:intergenic 40.0%
GTGGAAATGAATACGAGAGA+AGG - chr3_3:53059277-53059296 None:intergenic 40.0%
TTACGCAATTGGGTAAGTTG+CGG - chr3_3:53059299-53059318 None:intergenic 40.0%
TCAATCTGAGGGGTTATTTG+CGG + chr3_3:53059411-53059430 Msa0457880:five_prime_UTR 40.0%
CCAATTTGTGATGAATTGCG+GGG + chr3_3:53059461-53059480 Msa0457880:five_prime_UTR 40.0%
ATTGATTGTGGATGGAGGAA+AGG - chr3_3:53059509-53059528 None:intergenic 40.0%
! GTGGAAGCATACTAAAATGG+CGG + chr3_3:53059642-53059661 Msa0457880:five_prime_UTR 40.0%
GTTTGATGCACACTGCAATT+TGG - chr3_3:53059693-53059712 None:intergenic 40.0%
!! TGTCCTTTGTAGGAGTATTG+AGG - chr3_3:53059770-53059789 None:intergenic 40.0%
ACTCCTACAAAGGACATGTT+TGG + chr3_3:53059774-53059793 Msa0457880:CDS 40.0%
ATCTCCTGCAAAGTTGTTGT+CGG + chr3_3:53060047-53060066 Msa0457880:CDS 40.0%
! TAACAAGAGTGAGTGCCTTT+TGG - chr3_3:53060279-53060298 None:intergenic 40.0%
GTAGATGAGCACATACAAGT+CGG + chr3_3:53060370-53060389 Msa0457880:intron 40.0%
TAGTAACTGTTTCACAGCAG+AGG + chr3_3:53060664-53060683 Msa0457880:intron 40.0%
AGGACAAAATTAACCCAACC+TGG + chr3_3:53060684-53060703 Msa0457880:intron 40.0%
TGGTCACAAGTCAGTGATTT+AGG - chr3_3:53060779-53060798 None:intergenic 40.0%
!! AATCACTGACTTGTGACCAA+CGG + chr3_3:53060780-53060799 Msa0457880:intron 40.0%
! AAGGCTTGCTTGATAAAGGT+AGG + chr3_3:53060905-53060924 Msa0457880:intron 40.0%
TTTGGAAGGAGTTATAGGAG+GGG + chr3_3:53061011-53061030 Msa0457880:intron 40.0%
GCCAATGAATTAAATGGCTG+AGG + chr3_3:53061075-53061094 Msa0457880:intron 40.0%
TCTAGATTTGATCGAAAGGG+AGG + chr3_3:53061102-53061121 Msa0457880:intron 40.0%
!! CTGATTTGGCCAAGTTCATA+AGG + chr3_3:53061156-53061175 Msa0457880:intron 40.0%
TTTGGCCAAGTTCATAAGGA+TGG + chr3_3:53061160-53061179 Msa0457880:intron 40.0%
TTGGCCAAGTTCATAAGGAT+GGG + chr3_3:53061161-53061180 Msa0457880:intron 40.0%
GATTATATATGGACCGCTGT+TGG + chr3_3:53061218-53061237 Msa0457880:intron 40.0%
ATTCTGCTAGAAACCAACAG+CGG - chr3_3:53061234-53061253 None:intergenic 40.0%
!! CTGTTGGTTTCTAGCAGAAT+AGG + chr3_3:53061234-53061253 Msa0457880:intron 40.0%
TCTTCCTGGTACAATCCTTT+GGG - chr3_3:53061495-53061514 None:intergenic 40.0%
AGATCAATATGGACTCTTCC+TGG - chr3_3:53061509-53061528 None:intergenic 40.0%
CTAATGCTCACTTCTCTCTT+TGG - chr3_3:53061668-53061687 None:intergenic 40.0%
GAGAGAAGTGAGCATTAGAA+TGG + chr3_3:53061670-53061689 Msa0457880:intron 40.0%
GTGAGCATTAGAATGGAAAG+AGG + chr3_3:53061677-53061696 Msa0457880:intron 40.0%
AGAATGGAAAGAGGACAGTA+AGG + chr3_3:53061686-53061705 Msa0457880:intron 40.0%
GTTAATCTTGCCTAGTTTGG+TGG + chr3_3:53061782-53061801 Msa0457880:intron 40.0%
TGCTCAAGAGTCATCATATC+AGG + chr3_3:53061845-53061864 Msa0457880:intron 40.0%
GCTCAAGAGTCATCATATCA+GGG + chr3_3:53061846-53061865 Msa0457880:intron 40.0%
!! CAAACATTGATTCCTTGCCA+AGG - chr3_3:53061939-53061958 None:intergenic 40.0%
GCTATATTCTTAAGCAGGAC+GGG + chr3_3:53062006-53062025 Msa0457880:intron 40.0%
TGGGCATAGTCACATGTATA+GGG - chr3_3:53062103-53062122 None:intergenic 40.0%
TTGGGCATAGTCACATGTAT+AGG - chr3_3:53062104-53062123 None:intergenic 40.0%
GACCACAATTACTAGAGAAG+TGG + chr3_3:53062132-53062151 Msa0457880:intron 40.0%
ACCCACTTCTCTAGTAATTG+TGG - chr3_3:53062137-53062156 None:intergenic 40.0%
!!! AGGTGGTTTTAGGTATCAGA+TGG - chr3_3:53062175-53062194 None:intergenic 40.0%
! GAGTGAACCATTCTTTTAGG+TGG + chr3_3:53062204-53062223 Msa0457880:intron 40.0%
ACTCTTGCCACCTAAAAGAA+TGG - chr3_3:53062214-53062233 None:intergenic 40.0%
AGTCTTCTGCCTAATATTCC+CGG - chr3_3:53062273-53062292 None:intergenic 40.0%
GAGCCCACAAATTTATTGAG+CGG + chr3_3:53062319-53062338 Msa0457880:intron 40.0%
TGGCCGCTCAATAAATTTGT+GGG - chr3_3:53062325-53062344 None:intergenic 40.0%
AAATTTATTGAGCGGCCAGT+GGG + chr3_3:53062327-53062346 Msa0457880:intron 40.0%
GGAGTTTATACACCACTAAG+AGG + chr3_3:53062356-53062375 Msa0457880:intron 40.0%
! ACCACTAAGAGGGTTAGTAT+TGG + chr3_3:53062367-53062386 Msa0457880:intron 40.0%
ACCAATACTAACCCTCTTAG+TGG - chr3_3:53062371-53062390 None:intergenic 40.0%
ACAACACGTTCTCCTGATAA+GGG - chr3_3:53062649-53062668 None:intergenic 40.0%
AACAACACGTTCTCCTGATA+AGG - chr3_3:53062650-53062669 None:intergenic 40.0%
TGAACTCCCTAATGAGAAAG+AGG + chr3_3:53062763-53062782 Msa0457880:CDS 40.0%
GGGTTCGTGTAATTCAAGTA+CGG + chr3_3:53062885-53062904 Msa0457880:intron 40.0%
CCTCAATAGCATTCTTGAGA+AGG - chr3_3:53063376-53063395 None:intergenic 40.0%
CCTTCTCAAGAATGCTATTG+AGG + chr3_3:53063373-53063392 Msa0457880:intron 40.0%
TCACCTCCGATTTATAACCT+TGG + chr3_3:53063501-53063520 Msa0457880:intron 40.0%
TGACCAAGGTTATAAATCGG+AGG - chr3_3:53063507-53063526 None:intergenic 40.0%
AAAGGACAAGGAGCAACAAT+GGG + chr3_3:53063597-53063616 Msa0457880:CDS 40.0%
AACATACGACACACTTCTTC+TGG + chr3_3:53063620-53063639 Msa0457880:CDS 40.0%
CCTCTATAATCTTATCTGGC+AGG - chr3_3:53063770-53063789 None:intergenic 40.0%
CCTGCCAGATAAGATTATAG+AGG + chr3_3:53063767-53063786 Msa0457880:CDS 40.0%
TACATATTTGGACTCCCAGT+TGG + chr3_3:53063843-53063862 Msa0457880:intron 40.0%
TCTAGATTCCATGCAATCAG+GGG - chr3_3:53064021-53064040 None:intergenic 40.0%
GATCTAGATTCCATGCAATC+AGG - chr3_3:53064023-53064042 None:intergenic 40.0%
AGTTCAGGTATTTGCAGACA+TGG + chr3_3:53064131-53064150 Msa0457880:intron 40.0%
! GCAAGTGCCTTTAGAAAACT+AGG + chr3_3:53064198-53064217 Msa0457880:CDS 40.0%
ATTCTGCGGTTGTTGAATCA+AGG + chr3_3:53064410-53064429 Msa0457880:three_prime_UTR 40.0%
ATAGGTTGCTAAACTCGAAC+CGG - chr3_3:53064578-53064597 None:intergenic 40.0%
! ACCATGAGTTGAACTACAGT+TGG + chr3_3:53064600-53064619 Msa0457880:three_prime_UTR 40.0%
! CCATGAGTTGAACTACAGTT+GGG + chr3_3:53064601-53064620 Msa0457880:three_prime_UTR 40.0%
! CATGAGTTGAACTACAGTTG+GGG + chr3_3:53064602-53064621 Msa0457880:three_prime_UTR 40.0%
! ATGAGTTGAACTACAGTTGG+GGG + chr3_3:53064603-53064622 Msa0457880:three_prime_UTR 40.0%
CACAACCCCAAAGTTAAAAG+TGG + chr3_3:53064626-53064645 Msa0457880:three_prime_UTR 40.0%
! CTGGCTGAGTTTTCGTTATC+CGG - chr3_3:53059235-53059254 None:intergenic 45.0%
GTAGCGCTATAGCACAACAT+TGG + chr3_3:53059381-53059400 Msa0457880:five_prime_UTR 45.0%
CCCCGCAATTCATCACAAAT+TGG - chr3_3:53059464-53059483 None:intergenic 45.0%
! GCGCTTATAGTGGAGGTTAT+TGG + chr3_3:53059483-53059502 Msa0457880:intron 45.0%
TAGTTGTTGGACAGGTACAG+TGG + chr3_3:53059616-53059635 Msa0457880:intron 45.0%
GAAGCATACTAAAATGGCGG+AGG + chr3_3:53059645-53059664 Msa0457880:five_prime_UTR 45.0%
TCTCCTGCAAAGTTGTTGTC+GGG + chr3_3:53060048-53060067 Msa0457880:CDS 45.0%
TCGAAACTGAGTCCGAATGT+TGG + chr3_3:53060071-53060090 Msa0457880:CDS 45.0%
AAACTGAGTCCGAATGTTGG+TGG + chr3_3:53060074-53060093 Msa0457880:CDS 45.0%
ACAGAACCACCACCAACATT+CGG - chr3_3:53060086-53060105 None:intergenic 45.0%
ATGAGCACATACAAGTCGGA+TGG + chr3_3:53060374-53060393 Msa0457880:intron 45.0%
GTGATGAATAGGCCAGTGAA+AGG + chr3_3:53060614-53060633 Msa0457880:intron 45.0%
! AAATCCAGGCCGGTTCAAAA+GGG - chr3_3:53060723-53060742 None:intergenic 45.0%
AAACAAGTGCAAATCCAGGC+CGG - chr3_3:53060733-53060752 None:intergenic 45.0%
CCTGCTAAAAGACTTTCCGT+TGG - chr3_3:53060799-53060818 None:intergenic 45.0%
! CCAACGGAAAGTCTTTTAGC+AGG + chr3_3:53060796-53060815 Msa0457880:intron 45.0%
! CTTTTAGCAGGTAAAGGCCA+CGG + chr3_3:53060808-53060827 Msa0457880:intron 45.0%
TCGAAAGGGAGGAATTTGTG+AGG + chr3_3:53061113-53061132 Msa0457880:intron 45.0%
GGAGGAATTTGTGAGGAAGA+TGG + chr3_3:53061120-53061139 Msa0457880:intron 45.0%
GACTTGAGAGACAGCTGATT+TGG + chr3_3:53061142-53061161 Msa0457880:intron 45.0%
TATCCCCAAAGGATTGTACC+AGG + chr3_3:53061488-53061507 Msa0457880:intron 45.0%
CTTCCTGGTACAATCCTTTG+GGG - chr3_3:53061494-53061513 None:intergenic 45.0%
CTCTTCCTGGTACAATCCTT+TGG - chr3_3:53061496-53061515 None:intergenic 45.0%
GGTTCACCACTCACATCTAT+TGG - chr3_3:53061720-53061739 None:intergenic 45.0%
ATGTGAGTGGTGAACCTCAA+CGG + chr3_3:53061724-53061743 Msa0457880:intron 45.0%
ACTCAATGGTTAAGCCGTTG+AGG - chr3_3:53061741-53061760 None:intergenic 45.0%
TCAACGGCTTAACCATTGAG+TGG + chr3_3:53061740-53061759 Msa0457880:intron 45.0%
TGCGAATGGTAACCACTCAA+TGG - chr3_3:53061755-53061774 None:intergenic 45.0%
TGGCATCCATGAGATGTTGT+GGG + chr3_3:53061802-53061821 Msa0457880:intron 45.0%
TCATCATATCAGGGTCGAGT+TGG + chr3_3:53061855-53061874 Msa0457880:intron 45.0%
!! CATGTGCCATTTGAGATGAC+TGG + chr3_3:53061898-53061917 Msa0457880:intron 45.0%
! TGCCATTTGAGATGACTGGT+GGG + chr3_3:53061902-53061921 Msa0457880:intron 45.0%
!! CATTGATTCCTTGCCAAGGA+TGG - chr3_3:53061935-53061954 None:intergenic 45.0%
ATGAAGGTTGCTGCTGATGT+TGG + chr3_3:53062035-53062054 Msa0457880:intron 45.0%
!! TGCTGCTGATGTTGGTAATC+AGG + chr3_3:53062043-53062062 Msa0457880:intron 45.0%
!! GCTGCTGATGTTGGTAATCA+GGG + chr3_3:53062044-53062063 Msa0457880:intron 45.0%
! CGAACAGTAGAGGTGGTTTT+AGG - chr3_3:53062185-53062204 None:intergenic 45.0%
ATGGTTCACTCGAACAGTAG+AGG - chr3_3:53062195-53062214 None:intergenic 45.0%
GATGATAGCACCTTTGAGTC+CGG + chr3_3:53062251-53062270 Msa0457880:intron 45.0%
ATGATAGCACCTTTGAGTCC+GGG + chr3_3:53062252-53062271 Msa0457880:intron 45.0%
CCTAATATTCCCGGACTCAA+AGG - chr3_3:53062264-53062283 None:intergenic 45.0%
CCTTTGAGTCCGGGAATATT+AGG + chr3_3:53062261-53062280 Msa0457880:intron 45.0%
TAGGCAGAAGACTCAGAAAG+CGG + chr3_3:53062280-53062299 Msa0457880:intron 45.0%
CTGGCCGCTCAATAAATTTG+TGG - chr3_3:53062326-53062345 None:intergenic 45.0%
CAAATTTATTGAGCGGCCAG+TGG + chr3_3:53062326-53062345 Msa0457880:intron 45.0%
AATTTATTGAGCGGCCAGTG+GGG + chr3_3:53062328-53062347 Msa0457880:intron 45.0%
!! AGAGGGTTAGTATTGGTTGC+AGG + chr3_3:53062374-53062393 Msa0457880:intron 45.0%
GCACACTGCACATAACATCA+TGG - chr3_3:53062425-53062444 None:intergenic 45.0%
GTGCAATCCAAACCCTTATC+AGG + chr3_3:53062634-53062653 Msa0457880:intron 45.0%
ACGTTCTCCTGATAAGGGTT+TGG - chr3_3:53062644-53062663 None:intergenic 45.0%
! TGGAGCGTTAGACAAATGGA+CGG + chr3_3:53062793-53062812 Msa0457880:CDS 45.0%
GTTAGACAAATGGACGGCTT+GGG + chr3_3:53062799-53062818 Msa0457880:CDS 45.0%
CCTTGGCTACTGCAATCAAT+GGG - chr3_3:53062835-53062854 None:intergenic 45.0%
TCTTAAGGAAAAGGGGTCAG+TGG + chr3_3:53062864-53062883 Msa0457880:CDS 45.0%
CTTAAGGAAAAGGGGTCAGT+GGG + chr3_3:53062865-53062884 Msa0457880:CDS 45.0%
TCCTTTGCTCAACATCCACT+TGG - chr3_3:53063583-53063602 None:intergenic 45.0%
TGGATGTTGAGCAAAGGACA+AGG + chr3_3:53063585-53063604 Msa0457880:CDS 45.0%
CAAAGGACAAGGAGCAACAA+TGG + chr3_3:53063596-53063615 Msa0457880:CDS 45.0%
TATGGACCAGAGAGTAGATG+AGG + chr3_3:53063650-53063669 Msa0457880:CDS 45.0%
ATTCTGCCTCATCTACTCTC+TGG - chr3_3:53063659-53063678 None:intergenic 45.0%
TAGATGAGGCAGAATCCTTG+TGG + chr3_3:53063664-53063683 Msa0457880:CDS 45.0%
AGATCTAACGGCTCATGTTC+TGG + chr3_3:53063902-53063921 Msa0457880:intron 45.0%
TGGTCTGCATTGTCTCATTG+CGG + chr3_3:53063983-53064002 Msa0457880:intron 45.0%
CTAGATTCCATGCAATCAGG+GGG - chr3_3:53064020-53064039 None:intergenic 45.0%
TCAGGTATTTGCAGACATGG+AGG + chr3_3:53064134-53064153 Msa0457880:intron 45.0%
CCCAACTGTAGTTCAACTCA+TGG - chr3_3:53064604-53064623 None:intergenic 45.0%
ACTCAGCCAGAAACTCATCC+AGG + chr3_3:53059245-53059264 Msa0457880:five_prime_UTR 50.0%
ATCTGAGGGGTTATTTGCGG+TGG + chr3_3:53059414-53059433 Msa0457880:five_prime_UTR 50.0%
TGTTGGACAGGTACAGTGGA+TGG + chr3_3:53059620-53059639 Msa0457880:intron 50.0%
!! TGGTGGTGGTTCTGTTGAGA+AGG + chr3_3:53060091-53060110 Msa0457880:CDS 50.0%
AGAAGAGATTCGGCTCAGTC+TGG + chr3_3:53060253-53060272 Msa0457880:CDS 50.0%
ATGGCCTAGTACAGGCTCAA+CGG - chr3_3:53060483-53060502 None:intergenic 50.0%
AGTCGTGTATGGCCTAGTAC+AGG - chr3_3:53060491-53060510 None:intergenic 50.0%
CTATTCGTGTCGCCTTTCAC+TGG - chr3_3:53060629-53060648 None:intergenic 50.0%
! CAAATCCAGGCCGGTTCAAA+AGG - chr3_3:53060724-53060743 None:intergenic 50.0%
GAAGGAGTTATAGGAGGGGA+AGG + chr3_3:53061015-53061034 Msa0457880:intron 50.0%
CTGCGACCAATAGATGTGAG+TGG + chr3_3:53061711-53061730 Msa0457880:intron 50.0%
CTCATGGATGCCACCAAACT+AGG - chr3_3:53061795-53061814 None:intergenic 50.0%
GTGGCATCCATGAGATGTTG+TGG + chr3_3:53061801-53061820 Msa0457880:intron 50.0%
AGCTGACCCACAACATCTCA+TGG - chr3_3:53061811-53061830 None:intergenic 50.0%
!! GTGCCATTTGAGATGACTGG+TGG + chr3_3:53061901-53061920 Msa0457880:intron 50.0%
! GCCATTTGAGATGACTGGTG+GGG + chr3_3:53061903-53061922 Msa0457880:intron 50.0%
GTTCACTCGAACAGTAGAGG+TGG - chr3_3:53062192-53062211 None:intergenic 50.0%
AGGCAGAAGACTCAGAAAGC+GGG + chr3_3:53062281-53062300 Msa0457880:intron 50.0%
! CAGAAAGCGGGCTTCTTTGA+AGG + chr3_3:53062293-53062312 Msa0457880:intron 50.0%
CGTTAGACAAATGGACGGCT+TGG + chr3_3:53062798-53062817 Msa0457880:CDS 50.0%
! CCCATTGATTGCAGTAGCCA+AGG + chr3_3:53062832-53062851 Msa0457880:CDS 50.0%
GCCTTGGCTACTGCAATCAA+TGG - chr3_3:53062836-53062855 None:intergenic 50.0%
TGCTGGAGCTTAAATGCCCA+GGG + chr3_3:53063048-53063067 Msa0457880:intron 50.0%
GCCAAGTGGATGTTGAGCAA+AGG + chr3_3:53063579-53063598 Msa0457880:CDS 50.0%
CTTAGACACAGAGCGCATGT+GGG - chr3_3:53063706-53063725 None:intergenic 50.0%
TCTTAGACACAGAGCGCATG+TGG - chr3_3:53063707-53063726 None:intergenic 50.0%
! TAACGGCTCATGTTCTGGCT+TGG + chr3_3:53063907-53063926 Msa0457880:intron 50.0%
TTGCAGACATGGAGGAGTTG+CGG + chr3_3:53064142-53064161 Msa0457880:CDS 50.0%
TTGAATCGACCGGTAGTACC+CGG + chr3_3:53064469-53064488 Msa0457880:three_prime_UTR 50.0%
TAGTTCTCAGGAGACGAACC+CGG - chr3_3:53064491-53064510 None:intergenic 50.0%
CGCAATTGGGTAAGTTGCGG+TGG - chr3_3:53059296-53059315 None:intergenic 55.0%
! GAATTGCGGGGCGCTTATAG+TGG + chr3_3:53059473-53059492 Msa0457880:five_prime_UTR 55.0%
TGGACAGGTACAGTGGATGG+TGG + chr3_3:53059623-53059642 Msa0457880:intron 55.0%
CGACCCGACAACAACTTTGC+AGG - chr3_3:53060054-53060073 None:intergenic 55.0%
! CTGAGTCCGAATGTTGGTGG+TGG + chr3_3:53060077-53060096 Msa0457880:CDS 55.0%
TTCGGCTCAGTCTGGCCAAA+AGG + chr3_3:53060261-53060280 Msa0457880:CDS 55.0%
CTAGTACAGGCTCAACGGCT+TGG - chr3_3:53060478-53060497 None:intergenic 55.0%
CAAGCCGTTGAGCCTGTACT+AGG + chr3_3:53060476-53060495 Msa0457880:intron 55.0%
! AACTCCCTTTTGAACCGGCC+TGG + chr3_3:53060716-53060735 Msa0457880:intron 55.0%
GCCCCACCAGTCATCTCAAA+TGG - chr3_3:53061907-53061926 None:intergenic 55.0%
GCAGGACGGGTACAGAATGA+AGG + chr3_3:53062019-53062038 Msa0457880:intron 55.0%
GTGCTGGAGCTTAAATGCCC+AGG + chr3_3:53063047-53063066 Msa0457880:intron 55.0%
TGCATGACCCCCTGATTGCA+TGG + chr3_3:53064010-53064029 Msa0457880:intron 55.0%
TGCAGACATGGAGGAGTTGC+GGG + chr3_3:53064143-53064162 Msa0457880:CDS 55.0%
TGAATCGACCGGTAGTACCC+GGG + chr3_3:53064470-53064489 Msa0457880:three_prime_UTR 55.0%
AGTTCTCAGGAGACGAACCC+GGG - chr3_3:53064490-53064509 None:intergenic 55.0%
! TTGCGGGGCGCTTATAGTGG+AGG + chr3_3:53059476-53059495 Msa0457880:five_prime_UTR 60.0%
GGCTGATGCCATCCTTGGCA+AGG + chr3_3:53061924-53061943 Msa0457880:intron 60.0%
TTATTGAGCGGCCAGTGGGG+CGG + chr3_3:53062331-53062350 Msa0457880:intron 60.0%
ATAAACTCCTCCCGCCCCAC+TGG - chr3_3:53062345-53062364 None:intergenic 60.0%
GAGACGAACCCGGGTACTAC+CGG - chr3_3:53064481-53064500 None:intergenic 60.0%
GGTGGGGCTGATGCCATCCT+TGG + chr3_3:53061919-53061938 Msa0457880:intron 65.0%
TATTGAGCGGCCAGTGGGGC+GGG + chr3_3:53062332-53062351 Msa0457880:intron 65.0%
! TGAGCGGCCAGTGGGGCGGG+AGG + chr3_3:53062335-53062354 Msa0457880:intron 80.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 53059179 53064760 53059179 ID=Msa0457880;Name=Msa0457880
chr3_3 mRNA 53059179 53064760 53059179 ID=Msa0457880-mRNA-1;Parent=Msa0457880;Name=Msa0457880-mRNA-1;_AED=0.03;_eAED=0.03;_QI=437|1|1|1|0.85|0.75|8|431|274
chr3_3 exon 53059179 53059497 53059179 ID=Msa0457880-mRNA-1:exon:10254;Parent=Msa0457880-mRNA-1
chr3_3 exon 53059630 53059795 53059630 ID=Msa0457880-mRNA-1:exon:10255;Parent=Msa0457880-mRNA-1
chr3_3 exon 53059892 53059939 53059892 ID=Msa0457880-mRNA-1:exon:10256;Parent=Msa0457880-mRNA-1
chr3_3 exon 53060038 53060117 53060038 ID=Msa0457880-mRNA-1:exon:10257;Parent=Msa0457880-mRNA-1
chr3_3 exon 53060204 53060303 53060204 ID=Msa0457880-mRNA-1:exon:10258;Parent=Msa0457880-mRNA-1
chr3_3 exon 53062758 53062901 53062758 ID=Msa0457880-mRNA-1:exon:10259;Parent=Msa0457880-mRNA-1
chr3_3 exon 53063576 53063788 53063576 ID=Msa0457880-mRNA-1:exon:10260;Parent=Msa0457880-mRNA-1
chr3_3 exon 53064138 53064760 53064138 ID=Msa0457880-mRNA-1:exon:10261;Parent=Msa0457880-mRNA-1
chr3_3 five_prime_UTR 53059179 53059497 53059179 ID=Msa0457880-mRNA-1:five_prime_utr;Parent=Msa0457880-mRNA-1
chr3_3 five_prime_UTR 53059630 53059747 53059630 ID=Msa0457880-mRNA-1:five_prime_utr;Parent=Msa0457880-mRNA-1
chr3_3 CDS 53059748 53059795 53059748 ID=Msa0457880-mRNA-1:cds;Parent=Msa0457880-mRNA-1
chr3_3 CDS 53059892 53059939 53059892 ID=Msa0457880-mRNA-1:cds;Parent=Msa0457880-mRNA-1
chr3_3 CDS 53060038 53060117 53060038 ID=Msa0457880-mRNA-1:cds;Parent=Msa0457880-mRNA-1
chr3_3 CDS 53060204 53060303 53060204 ID=Msa0457880-mRNA-1:cds;Parent=Msa0457880-mRNA-1
chr3_3 CDS 53062758 53062901 53062758 ID=Msa0457880-mRNA-1:cds;Parent=Msa0457880-mRNA-1
chr3_3 CDS 53063576 53063788 53063576 ID=Msa0457880-mRNA-1:cds;Parent=Msa0457880-mRNA-1
chr3_3 CDS 53064138 53064329 53064138 ID=Msa0457880-mRNA-1:cds;Parent=Msa0457880-mRNA-1
chr3_3 three_prime_UTR 53064330 53064760 53064330 ID=Msa0457880-mRNA-1:three_prime_utr;Parent=Msa0457880-mRNA-1
Gene Sequence

>Msa0457880

ATGCCTATAACAATTGTTTCCTCAATACTCCTACAAAGGACATGTTTGACTAAACCGAATAAATTCTTGTCATCTGCAATAAGTATTACTCCGAAGGCAAGTTGTATCTCCTGCAAAGTTGTTGTCGGGTCGAAACTGAGTCCGAATGTTGGTGGTGGTTCTGTTGAGAAGGATAAAAAAGGGAAGAAGAAAAAAGGGGGTAAGATAGAACACCACTTATGGCAAAGAAGAGATTCGGCTCAGTCTGGCCAAAAGGCACTCACTCTTGTTACAACTATCTGTGAACTCCCTAATGAGAAAGAGGCTGTTTATGGAGCGTTAGACAAATGGACGGCTTGGGAAACAGAGTTCCCATTGATTGCAGTAGCCAAGGCTTTAAAAATCTTAAGGAAAAGGGGTCAGTGGGTTCGTGTAATTCAATTAGCCAAGTGGATGTTGAGCAAAGGACAAGGAGCAACAATGGGAACATACGACACACTTCTTCTGGCATTTGATATGGACCAGAGAGTAGATGAGGCAGAATCCTTGTGGAATATGATTATACATGCCCACATGCGCTCTGTGTCTAAGAGACTGTTTTCTAGGATGATTTCAGTGTATGATCATCATGACCTGCCAGATAAGATTATAGAGGTATTTGCAGACATGGAGGAGTTGCGGGTAAAACCTGATGAAGATACTGTCAGGAAAGTGGCAAGTGCCTTTAGAAAACTAGGCCAAGAAGAGAAAAGAAAATTGGTGATAAAACGATATGGCCTTAAATGGAAGTATATTCACTTCAATGGTGAACGGGTGAAAGTTAGAACACATGCATGGGAAGACTAA
Protein sequence

>Msa0457880

MPITIVSSILLQRTCLTKPNKFLSSAISITPKASCISCKVVVGSKLSPNVGGGSVEKDKKGKKKKGGKIEHHLWQRRDSAQSGQKALTLVTTICELPNEKEAVYGALDKWTAWETEFPLIAVAKALKILRKRGQWVRVIQLAKWMLSKGQGATMGTYDTLLLAFDMDQRVDEAESLWNMIIHAHMRSVSKRLFSRMISVYDHHDLPDKIIEVFADMEELRVKPDEDTVRKVASAFRKLGQEEKRKLVIKRYGLKWKYIHFNGERVKVRTHAWED*