Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1288320 | A0A072U1P4 | 96.552 | 290 | 5 | 3 | 1 | 290 | 1 | 285 | 0.0 | 564 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027540 | Msa1288320 | -0.813320 | 2.717706e-51 | -8.615850e-47 |
| Msa0038350 | Msa1288320 | 0.826873 | 2.136616e-54 | -8.615850e-47 |
| Msa0044710 | Msa1288320 | -0.810923 | 9.052389e-51 | -8.615850e-47 |
| Msa0068700 | Msa1288320 | 0.809035 | 2.308788e-50 | -8.615850e-47 |
| Msa0075310 | Msa1288320 | -0.823879 | 1.092157e-53 | -8.615850e-47 |
| Msa0091770 | Msa1288320 | -0.812884 | 3.386637e-51 | -8.615850e-47 |
| Msa0094100 | Msa1288320 | -0.805603 | 1.232892e-49 | -8.615850e-47 |
| Msa0101320 | Msa1288320 | 0.803335 | 3.662351e-49 | -8.615850e-47 |
| Msa0114250 | Msa1288320 | -0.802781 | 4.766273e-49 | -8.615850e-47 |
| Msa0626230 | Msa1288320 | -0.841654 | 4.169247e-58 | -8.615850e-47 |
| Msa0630990 | Msa1288320 | -0.807134 | 5.863010e-50 | -8.615850e-47 |
| Msa0638280 | Msa1288320 | -0.809571 | 1.771376e-50 | -8.615850e-47 |
| Msa0638320 | Msa1288320 | -0.806751 | 7.065432e-50 | -8.615850e-47 |
| Msa0672120 | Msa1288320 | -0.827140 | 1.844465e-54 | -8.615850e-47 |
| Msa0714600 | Msa1288320 | -0.822330 | 2.509984e-53 | -8.615850e-47 |
| Msa0715310 | Msa1288320 | -0.809818 | 1.567884e-50 | -8.615850e-47 |
| Msa0722930 | Msa1288320 | -0.824998 | 5.954756e-54 | -8.615850e-47 |
| Msa0723140 | Msa1288320 | -0.827782 | 1.293612e-54 | -8.615850e-47 |
| Msa0724050 | Msa1288320 | -0.801478 | 8.835209e-49 | -8.615850e-47 |
| Msa0725480 | Msa1288320 | 0.882951 | 6.768086e-71 | -8.615850e-47 |
| Msa0743650 | Msa1288320 | -0.803925 | 2.761947e-49 | -8.615850e-47 |
| Msa0748610 | Msa1288320 | -0.811656 | 6.278827e-51 | -8.615850e-47 |
| Msa0766100 | Msa1288320 | 0.883423 | 4.542547e-71 | -8.615850e-47 |
| Msa0789270 | Msa1288320 | -0.825434 | 4.698560e-54 | -8.615850e-47 |
| Msa0789280 | Msa1288320 | -0.823480 | 1.353971e-53 | -8.615850e-47 |
| Msa0789290 | Msa1288320 | -0.824317 | 8.620400e-54 | -8.615850e-47 |
| Msa0789300 | Msa1288320 | -0.826393 | 2.779976e-54 | -8.615850e-47 |
| Msa0792510 | Msa1288320 | -0.810855 | 9.365590e-51 | -8.615850e-47 |
| Msa0813320 | Msa1288320 | 0.813729 | 2.208936e-51 | -8.615850e-47 |
| Msa0828570 | Msa1288320 | -0.831585 | 1.535391e-55 | -8.615850e-47 |
| Msa0836680 | Msa1288320 | -0.802395 | 5.725751e-49 | -8.615850e-47 |
| Msa0149500 | Msa1288320 | -0.805365 | 1.382758e-49 | -8.615850e-47 |
| Msa0164360 | Msa1288320 | -0.806748 | 7.076518e-50 | -8.615850e-47 |
| Msa0168100 | Msa1288320 | -0.822409 | 2.405814e-53 | -8.615850e-47 |
| Msa0182930 | Msa1288320 | -0.823479 | 1.355106e-53 | -8.615850e-47 |
| Msa0198440 | Msa1288320 | -0.805783 | 1.129942e-49 | -8.615850e-47 |
| Msa0200950 | Msa1288320 | 0.812121 | 4.973004e-51 | -8.615850e-47 |
| Msa0208630 | Msa1288320 | -0.827917 | 1.200153e-54 | -8.615850e-47 |
| Msa0230770 | Msa1288320 | -0.819949 | 8.875969e-53 | -8.615850e-47 |
| Msa1247060 | Msa1288320 | 0.867176 | 1.659610e-65 | -8.615850e-47 |
| Msa1261470 | Msa1288320 | -0.803827 | 2.894817e-49 | -8.615850e-47 |
| Msa1262310 | Msa1288320 | -0.801476 | 8.845717e-49 | -8.615850e-47 |
| Msa1265820 | Msa1288320 | 0.827606 | 1.426134e-54 | -8.615850e-47 |
| Msa1288320 | Msa1292730 | -0.801253 | 9.826200e-49 | -8.615850e-47 |
| Msa1288320 | Msa1297090 | -0.803100 | 4.094610e-49 | -8.615850e-47 |
| Msa1288320 | Msa1304180 | -0.800148 | 1.650745e-48 | -8.615850e-47 |
| Msa1288320 | Msa1328850 | -0.800141 | 1.656783e-48 | -8.615850e-47 |
| Msa1288320 | Msa1335970 | 0.835710 | 1.431986e-56 | -8.615850e-47 |
| Msa1288320 | Msa1347620 | -0.806428 | 8.265794e-50 | -8.615850e-47 |
| Msa1288320 | Msa1358870 | 0.816240 | 6.123150e-52 | -8.615850e-47 |
| Msa1288320 | Msa1373950 | -0.804157 | 2.472108e-49 | -8.615850e-47 |
| Msa1288320 | Msa1421870 | -0.827172 | 1.811386e-54 | -8.615850e-47 |
| Msa1288320 | Msa1427830 | -0.827043 | 1.945549e-54 | -8.615850e-47 |
| Msa1288320 | Msa1454110 | -0.815129 | 1.082659e-51 | -8.615850e-47 |
| Msa1288320 | Msa1457670 | 0.802143 | 6.451860e-49 | -8.615850e-47 |
| Msa0371540 | Msa1288320 | -0.812558 | 3.991480e-51 | -8.615850e-47 |
| Msa0376510 | Msa1288320 | -0.809632 | 1.718880e-50 | -8.615850e-47 |
| Msa0418430 | Msa1288320 | -0.820145 | 8.007958e-53 | -8.615850e-47 |
| Msa0419970 | Msa1288320 | -0.800044 | 1.733511e-48 | -8.615850e-47 |
| Msa0425050 | Msa1288320 | -0.814491 | 1.499320e-51 | -8.615850e-47 |
| Msa0457880 | Msa1288320 | -0.807817 | 4.199733e-50 | -8.615850e-47 |
| Msa0462590 | Msa1288320 | -0.806554 | 7.776266e-50 | -8.615850e-47 |
| Msa0466060 | Msa1288320 | -0.806767 | 7.010863e-50 | -8.615850e-47 |
| Msa0472740 | Msa1288320 | -0.810473 | 1.132689e-50 | -8.615850e-47 |
| Msa1004210 | Msa1288320 | -0.810466 | 1.136611e-50 | -8.615850e-47 |
| Msa1018020 | Msa1288320 | 0.875129 | 3.930827e-68 | -8.615850e-47 |
| Msa1033440 | Msa1288320 | 0.802360 | 5.822323e-49 | -8.615850e-47 |
| Msa1036390 | Msa1288320 | -0.816719 | 4.784490e-52 | -8.615850e-47 |
| Msa1042890 | Msa1288320 | 0.800290 | 1.544455e-48 | -8.615850e-47 |
| Msa1046610 | Msa1288320 | -0.829970 | 3.819544e-55 | -8.615850e-47 |
| Msa1076680 | Msa1288320 | -0.805281 | 1.439847e-49 | -8.615850e-47 |
| Msa1102540 | Msa1288320 | -0.817117 | 3.893631e-52 | -8.615850e-47 |
| Msa0240780 | Msa1288320 | -0.825331 | 4.968709e-54 | -8.615850e-47 |
| Msa0258670 | Msa1288320 | 0.825409 | 4.762070e-54 | -8.615850e-47 |
| Msa0260910 | Msa1288320 | -0.802356 | 5.832066e-49 | -8.615850e-47 |
| Msa0265820 | Msa1288320 | -0.805398 | 1.360699e-49 | -8.615850e-47 |
| Msa0270270 | Msa1288320 | -0.833907 | 4.072968e-56 | -8.615850e-47 |
| Msa0278670 | Msa1288320 | -0.805437 | 1.335800e-49 | -8.615850e-47 |
| Msa0288240 | Msa1288320 | -0.810216 | 1.286918e-50 | -8.615850e-47 |
| Msa0298390 | Msa1288320 | 0.800397 | 1.468854e-48 | -8.615850e-47 |
| Msa0298940 | Msa1288320 | -0.844255 | 8.468760e-59 | -8.615850e-47 |
| Msa0298970 | Msa1288320 | -0.822163 | 2.743235e-53 | -8.615850e-47 |
| Msa0325470 | Msa1288320 | -0.812297 | 4.550072e-51 | -8.615850e-47 |
| Msa0326670 | Msa1288320 | -0.808314 | 3.290837e-50 | -8.615850e-47 |
| Msa0358170 | Msa1288320 | -0.803827 | 2.894817e-49 | -8.615850e-47 |
| Msa1111630 | Msa1288320 | -0.801421 | 9.074634e-49 | -8.615850e-47 |
| Msa1112000 | Msa1288320 | -0.815017 | 1.146499e-51 | -8.615850e-47 |
| Msa1147980 | Msa1288320 | 0.853798 | 1.882429e-61 | -8.615850e-47 |
| Msa1171690 | Msa1288320 | -0.808788 | 2.606833e-50 | -8.615850e-47 |
| Msa1206020 | Msa1288320 | -0.800527 | 1.382105e-48 | -8.615850e-47 |
| Msa1220480 | Msa1288320 | 0.800411 | 1.459342e-48 | -8.615850e-47 |
| Msa1221200 | Msa1288320 | 0.821661 | 3.586102e-53 | -8.615850e-47 |
| Msa0517340 | Msa1288320 | -0.813624 | 2.329592e-51 | -8.615850e-47 |
| Msa0524890 | Msa1288320 | 0.802687 | 4.984133e-49 | -8.615850e-47 |
| Msa0526640 | Msa1288320 | 0.805665 | 1.196514e-49 | -8.615850e-47 |
| Msa0540070 | Msa1288320 | -0.831676 | 1.458377e-55 | -8.615850e-47 |
| Msa0543900 | Msa1288320 | -0.808983 | 2.368980e-50 | -8.615850e-47 |
| Msa0843280 | Msa1288320 | -0.814235 | 1.708362e-51 | -8.615850e-47 |
| Msa0845590 | Msa1288320 | 0.849151 | 3.886666e-60 | -8.615850e-47 |
| Msa0847200 | Msa1288320 | -0.834900 | 2.293574e-56 | -8.615850e-47 |
| Msa0863770 | Msa1288320 | -0.811789 | 5.873635e-51 | -8.615850e-47 |
| Msa0865940 | Msa1288320 | 0.806020 | 1.007584e-49 | -8.615850e-47 |
| Msa0903730 | Msa1288320 | -0.805903 | 1.066231e-49 | -8.615850e-47 |
| Msa0951720 | Msa1288320 | -0.801901 | 7.233827e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1288320 | MtrunA17_Chr8g0361661 | 96.207 | 290 | 5 | 4 | 1 | 290 | 1 | 284 | 0.0 | 558 |
| Msa1288320 | MtrunA17_Chr5g0417141 | 73.986 | 296 | 65 | 7 | 1 | 290 | 1 | 290 | 1.79e-125 | 359 |
| Msa1288320 | MtrunA17_Chr1g0208551 | 37.500 | 264 | 140 | 5 | 1 | 257 | 1 | 246 | 1.05e-57 | 186 |
| Msa1288320 | MtrunA17_Chr7g0269921 | 39.037 | 187 | 101 | 5 | 67 | 249 | 17 | 194 | 3.89e-39 | 136 |
| Msa1288320 | MtrunA17_Chr7g0251421 | 35.897 | 195 | 111 | 7 | 68 | 258 | 14 | 198 | 7.27e-38 | 133 |
| Msa1288320 | MtrunA17_Chr1g0194751 | 42.771 | 166 | 88 | 4 | 67 | 227 | 17 | 180 | 5.10e-31 | 115 |
| Msa1288320 | MtrunA17_Chr7g0217321 | 30.286 | 175 | 111 | 4 | 66 | 240 | 31 | 194 | 7.92e-24 | 96.7 |
| Msa1288320 | MtrunA17_Chr1g0181371 | 39.286 | 84 | 43 | 3 | 39 | 120 | 235 | 312 | 3.33e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1288320 | AT2G02960.3 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 1.27e-99 | 293 |
| Msa1288320 | AT2G02960.2 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 1.27e-99 | 293 |
| Msa1288320 | AT2G02960.6 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 1.27e-99 | 293 |
| Msa1288320 | AT2G02960.4 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 1.27e-99 | 293 |
| Msa1288320 | AT2G02960.1 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 1.27e-99 | 293 |
| Msa1288320 | AT3G47550.3 | 54.392 | 296 | 113 | 7 | 1 | 285 | 1 | 285 | 4.27e-90 | 270 |
| Msa1288320 | AT3G47550.6 | 54.392 | 296 | 113 | 7 | 1 | 285 | 1 | 285 | 4.27e-90 | 270 |
| Msa1288320 | AT1G14260.2 | 59.701 | 268 | 89 | 5 | 4 | 269 | 5 | 255 | 2.28e-86 | 259 |
| Msa1288320 | AT1G14260.1 | 59.701 | 268 | 89 | 5 | 4 | 269 | 5 | 255 | 2.28e-86 | 259 |
| Msa1288320 | AT1G14260.3 | 59.701 | 268 | 89 | 5 | 4 | 269 | 5 | 255 | 2.28e-86 | 259 |
| Msa1288320 | AT5G62460.3 | 70.000 | 240 | 57 | 6 | 57 | 287 | 81 | 314 | 2.52e-86 | 261 |
| Msa1288320 | AT5G62460.1 | 70.000 | 240 | 57 | 6 | 57 | 287 | 68 | 301 | 2.84e-86 | 261 |
| Msa1288320 | AT5G62460.2 | 70.000 | 240 | 57 | 6 | 57 | 287 | 68 | 301 | 2.84e-86 | 261 |
| Msa1288320 | AT3G47550.2 | 54.582 | 251 | 94 | 6 | 1 | 242 | 1 | 240 | 1.71e-77 | 236 |
| Msa1288320 | AT2G02960.5 | 71.812 | 149 | 37 | 2 | 57 | 205 | 33 | 176 | 1.94e-64 | 204 |
| Msa1288320 | AT3G47550.1 | 50.218 | 229 | 94 | 6 | 1 | 220 | 1 | 218 | 3.24e-60 | 191 |
| Msa1288320 | AT2G01275.2 | 38.934 | 244 | 130 | 3 | 1 | 244 | 1 | 225 | 1.75e-53 | 175 |
| Msa1288320 | AT2G01275.4 | 38.934 | 244 | 130 | 3 | 1 | 244 | 1 | 225 | 1.75e-53 | 175 |
| Msa1288320 | AT2G01275.1 | 38.934 | 244 | 130 | 3 | 1 | 244 | 1 | 225 | 1.75e-53 | 175 |
| Msa1288320 | AT2G01275.3 | 38.934 | 244 | 130 | 3 | 1 | 244 | 27 | 251 | 1.94e-53 | 176 |
| Msa1288320 | AT2G01275.5 | 38.934 | 244 | 130 | 3 | 1 | 244 | 27 | 251 | 1.94e-53 | 176 |
| Msa1288320 | AT5G38070.1 | 36.255 | 251 | 137 | 5 | 1 | 251 | 1 | 228 | 4.66e-42 | 145 |
| Msa1288320 | AT4G02075.3 | 36.702 | 188 | 102 | 4 | 64 | 249 | 14 | 186 | 1.10e-33 | 122 |
| Msa1288320 | AT4G02075.1 | 36.702 | 188 | 102 | 4 | 64 | 249 | 14 | 186 | 1.47e-33 | 122 |
| Msa1288320 | AT1G02610.2 | 34.375 | 192 | 119 | 3 | 58 | 249 | 9 | 193 | 5.59e-32 | 117 |
| Msa1288320 | AT1G02610.1 | 34.375 | 192 | 119 | 3 | 58 | 249 | 9 | 193 | 5.82e-32 | 118 |
| Msa1288320 | AT4G02075.2 | 39.024 | 164 | 82 | 4 | 64 | 223 | 14 | 163 | 1.75e-26 | 102 |
| Msa1288320 | AT4G32670.2 | 38.462 | 91 | 49 | 3 | 45 | 132 | 12 | 98 | 1.61e-11 | 65.1 |
| Msa1288320 | AT4G32670.1 | 38.462 | 91 | 49 | 3 | 45 | 132 | 12 | 98 | 1.61e-11 | 65.1 |
Find 110 sgRNAs with CRISPR-Local
Find 380 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATAATAACTTTATTTAT+TGG | 0.168463 | 8_3:+40906445 | Msa1288320:three_prime_UTR |
| TAGTGTTCGGTGGTGGAATT+TGG | 0.173465 | 8_3:-40903525 | None:intergenic |
| CATTCACCGGCTGGGCCTTC+GGG | 0.238857 | 8_3:+40903908 | Msa1288320:CDS |
| GCGCGTGCCTCAAGAGTAAA+AGG | 0.240504 | 8_3:-40905642 | None:intergenic |
| TCATTCACCGGCTGGGCCTT+CGG | 0.254316 | 8_3:+40903907 | Msa1288320:CDS |
| GACAGACTCACCGAAGAAAA+AGG | 0.258705 | 8_3:-40903636 | None:intergenic |
| ATACAAACTACACTTGTTCT+TGG | 0.295160 | 8_3:-40906259 | None:intergenic |
| CAACGCTGGTGCAACGAAAA+AGG | 0.305135 | 8_3:+40904819 | Msa1288320:CDS |
| CATATTCAGCTTCGAAGAAT+TGG | 0.316433 | 8_3:-40905368 | None:intergenic |
| GAAGAAACTACCATTGATAT+AGG | 0.327532 | 8_3:+40905135 | Msa1288320:CDS |
| GTTGCTTTCGTGCTACAATC+TGG | 0.341099 | 8_3:+40906176 | Msa1288320:CDS |
| ATATCAATGGTAGTTTCTTC+AGG | 0.355321 | 8_3:-40905132 | None:intergenic |
| GACACTCTCTGGCACGCCTT+TGG | 0.362869 | 8_3:+40905302 | Msa1288320:CDS |
| ATCACCGGCGGCATCGGTTC+AGG | 0.365743 | 8_3:-40903884 | None:intergenic |
| CACGGTTGCTGCTGGTGTTA+TGG | 0.367886 | 8_3:-40906222 | None:intergenic |
| TACCTTGCTATATCATGGCT+TGG | 0.375698 | 8_3:+40905858 | Msa1288320:CDS |
| GGAGGATGGTATTGATAATC+TGG | 0.376997 | 8_3:+40904021 | Msa1288320:CDS |
| CGCCTGTAGCGGAAGTCTTA+AGG | 0.384567 | 8_3:+40904054 | Msa1288320:CDS |
| AAGAAGGGAAGAGAGAGAAT+TGG | 0.386729 | 8_3:-40903583 | None:intergenic |
| TGTTGAGCCAACGGCTCAAC+CGG | 0.390160 | 8_3:-40903845 | None:intergenic |
| AAGTGTAGTTTGTATGGAAA+TGG | 0.400654 | 8_3:+40906267 | Msa1288320:exon |
| AGTGTTCGGTGGTGGAATTT+GGG | 0.403288 | 8_3:-40903524 | None:intergenic |
| ATTGGATTCGGCGTATATAT+AGG | 0.405439 | 8_3:-40903565 | None:intergenic |
| AAGAACAAGTGTAGTTTGTA+TGG | 0.407359 | 8_3:+40906261 | Msa1288320:exon |
| AACATTCTTGCAGCGGAGGC+TGG | 0.408803 | 8_3:+40905280 | Msa1288320:intron |
| CCGGCATCGGTCGCATTAAT+CGG | 0.412341 | 8_3:-40903826 | None:intergenic |
| ACCTTGCTATATCATGGCTT+GGG | 0.419793 | 8_3:+40905859 | Msa1288320:CDS |
| TTAAAATGAAATTAGATTGA+GGG | 0.420346 | 8_3:-40906395 | None:intergenic |
| AGCGGAGGCTGGACACTCTC+TGG | 0.428867 | 8_3:+40905291 | Msa1288320:intron |
| AAGAAACTACCATTGATATA+GGG | 0.430184 | 8_3:+40905136 | Msa1288320:CDS |
| CCGGTGATTCATTCACCGGC+TGG | 0.431407 | 8_3:+40903899 | Msa1288320:CDS |
| TTGGTGTGGGTGCGGATTCA+CGG | 0.440637 | 8_3:-40906240 | None:intergenic |
| CGATCATGTGGTGTTGTTTG+TGG | 0.446181 | 8_3:+40903802 | Msa1288320:CDS |
| TTTAAAATGAAATTAGATTG+AGG | 0.448859 | 8_3:-40906396 | None:intergenic |
| CCGATTAATGCGACCGATGC+CGG | 0.458371 | 8_3:+40903826 | Msa1288320:CDS |
| TGCGGATTCACGGTTGCTGC+TGG | 0.464087 | 8_3:-40906230 | None:intergenic |
| GGCGGCATCGGTTCAGGAGC+AGG | 0.464476 | 8_3:-40903878 | None:intergenic |
| GGTGGTGGAGCAATATAATC+AGG | 0.464702 | 8_3:-40905099 | None:intergenic |
| GGTTCAGGAGCAGGCTGAGC+CGG | 0.472619 | 8_3:-40903869 | None:intergenic |
| GCTACAATCTGGGCAGCATA+GGG | 0.473645 | 8_3:+40906187 | Msa1288320:CDS |
| ACCGATGCCGGTTGAGCCGT+TGG | 0.474368 | 8_3:+40903838 | Msa1288320:CDS |
| GTTTATAGAGCGAGAAAGAA+GGG | 0.476227 | 8_3:-40903598 | None:intergenic |
| AACATGTGAAATTTGTCATA+AGG | 0.477069 | 8_3:+40904848 | Msa1288320:CDS |
| ATTTGGGAACAACGTGGAAA+AGG | 0.477128 | 8_3:-40903508 | None:intergenic |
| CGAGCCGCTGTTGCAGCAGA+TGG | 0.477787 | 8_3:+40903970 | Msa1288320:CDS |
| TGAGCCGTTGGCTCAACATC+CGG | 0.480048 | 8_3:+40903850 | Msa1288320:CDS |
| TCAGGATGTGGACGAGGTGG+TGG | 0.480833 | 8_3:-40905114 | None:intergenic |
| GGTTTATAGAGCGAGAAAGA+AGG | 0.486147 | 8_3:-40903599 | None:intergenic |
| ACAGGAGGCTGCAGCATTGG+CGG | 0.488662 | 8_3:+40906145 | Msa1288320:intron |
| GGCTGAGTGTAGGATTTGTC+AGG | 0.492601 | 8_3:+40903997 | Msa1288320:CDS |
| ATTGTAGCACGAAAGCAACT+TGG | 0.495200 | 8_3:-40906172 | None:intergenic |
| AATACAGGAGGCTGCAGCAT+TGG | 0.499752 | 8_3:+40906142 | Msa1288320:intron |
| CTTGCGTGATCCTCGATTGT+TGG | 0.500268 | 8_3:+40905326 | Msa1288320:CDS |
| GTTATATTAGAATTAGAGCC+GGG | 0.500305 | 8_3:-40906349 | None:intergenic |
| TTCGGGTTCTTCTTCAGCGA+CGG | 0.501494 | 8_3:+40903925 | Msa1288320:CDS |
| GGAAGAGAGAGAATTGGATT+CGG | 0.501846 | 8_3:-40903577 | None:intergenic |
| TTGCTTTCGTGCTACAATCT+GGG | 0.503156 | 8_3:+40906177 | Msa1288320:CDS |
| TACCTTAAGACTTCCGCTAC+AGG | 0.504196 | 8_3:-40904056 | None:intergenic |
| ATGGTAGTTTCTTCAGGATG+TGG | 0.506061 | 8_3:-40905126 | None:intergenic |
| ACTTGTTCTTGGTGTGGGTG+CGG | 0.506923 | 8_3:-40906248 | None:intergenic |
| GAATGAATCACCGGCGGCAT+CGG | 0.507695 | 8_3:-40903890 | None:intergenic |
| GAAAGGTTAACGTTAGTGTT+CGG | 0.514852 | 8_3:-40903538 | None:intergenic |
| GAGGCACGCGCTTTCTGTCA+CGG | 0.518453 | 8_3:+40905654 | Msa1288320:CDS |
| TTCTTCGAAGCTGAATATGA+TGG | 0.519355 | 8_3:+40905372 | Msa1288320:CDS |
| CGGTGATTCATTCACCGGCT+GGG | 0.519534 | 8_3:+40903900 | Msa1288320:CDS |
| TTAACGTTAGTGTTCGGTGG+TGG | 0.521659 | 8_3:-40903532 | None:intergenic |
| GAAGAACCCGAAGGCCCAGC+CGG | 0.522173 | 8_3:-40903914 | None:intergenic |
| ATCTCCATCTGCTGCAACAG+CGG | 0.524481 | 8_3:-40903974 | None:intergenic |
| AACTACACTTGTTCTTGGTG+TGG | 0.527387 | 8_3:-40906254 | None:intergenic |
| TTAATCTTACCCTATATCAA+TGG | 0.530350 | 8_3:-40905145 | None:intergenic |
| GCCGCCGGTGATTCATTCAC+CGG | 0.532546 | 8_3:+40903895 | Msa1288320:CDS |
| TGCTCCTGAACCGATGCCGC+CGG | 0.532957 | 8_3:+40903880 | Msa1288320:CDS |
| AACGTGGAAAAGGATATTAT+AGG | 0.536863 | 8_3:-40903498 | None:intergenic |
| AGTTATATTAGAATTAGAGC+CGG | 0.543436 | 8_3:-40906350 | None:intergenic |
| AGCAATATAATCAGGTTCAT+AGG | 0.549152 | 8_3:-40905091 | None:intergenic |
| ATAGAAAGTGCGTCCAACGC+TGG | 0.549813 | 8_3:+40904805 | Msa1288320:CDS |
| TGCTACAATCTGGGCAGCAT+AGG | 0.553716 | 8_3:+40906186 | Msa1288320:CDS |
| ACTACACTTGTTCTTGGTGT+GGG | 0.560807 | 8_3:-40906253 | None:intergenic |
| ACGGCAAAATGCAGCTCCGT+TGG | 0.561312 | 8_3:-40905412 | None:intergenic |
| GCCAACGGCTCAACCGGCAT+CGG | 0.561647 | 8_3:-40903839 | None:intergenic |
| GTTTCTTCAGGATGTGGACG+AGG | 0.562462 | 8_3:-40905120 | None:intergenic |
| AGACTTCCGCTACAGGCGCA+AGG | 0.568684 | 8_3:-40904049 | None:intergenic |
| TTGTAGCACGAAAGCAACTT+GGG | 0.569577 | 8_3:-40906171 | None:intergenic |
| AGGATTTGTCAGGAGGAGGA+TGG | 0.574659 | 8_3:+40904007 | Msa1288320:CDS |
| GTGTAGGATTTGTCAGGAGG+AGG | 0.581312 | 8_3:+40904003 | Msa1288320:CDS |
| TGAGCCGGATGTTGAGCCAA+CGG | 0.587025 | 8_3:-40903854 | None:intergenic |
| GCTGTTGCAGCAGATGGAGA+TGG | 0.590554 | 8_3:+40903976 | Msa1288320:CDS |
| CCAGCCGGTGAATGAATCAC+CGG | 0.593661 | 8_3:-40903899 | None:intergenic |
| GAAAATCCTTGCGCCTGTAG+CGG | 0.596482 | 8_3:+40904043 | Msa1288320:CDS |
| GCGTATATATAGGAAGAGAA+AGG | 0.598332 | 8_3:-40903555 | None:intergenic |
| AGATGGAGATGGCTGAGTGT+AGG | 0.601452 | 8_3:+40903987 | Msa1288320:CDS |
| TCGATTGTTGGCAATTGCAG+AGG | 0.603328 | 8_3:+40905338 | Msa1288320:CDS |
| TTACGATCAGAGCAGCTGAA+CGG | 0.606397 | 8_3:-40905431 | None:intergenic |
| CGCGTGCCTCAAGAGTAAAA+GGG | 0.611961 | 8_3:-40905641 | None:intergenic |
| CGAGGATCACGCAAGTCCAA+AGG | 0.614034 | 8_3:-40905318 | None:intergenic |
| TCTTCAGGATGTGGACGAGG+TGG | 0.627168 | 8_3:-40905117 | None:intergenic |
| AGGTTAACGTTAGTGTTCGG+TGG | 0.627205 | 8_3:-40903535 | None:intergenic |
| GCGACGGATGATGACGATGT+CGG | 0.628741 | 8_3:+40903941 | Msa1288320:CDS |
| GCCCAAGCCATGATATAGCA+AGG | 0.629507 | 8_3:-40905860 | None:intergenic |
| TCTGCAATTGCCAACAATCG+AGG | 0.633472 | 8_3:-40905336 | None:intergenic |
| AATGATGAGCAAGAGTAGCA+TGG | 0.635348 | 8_3:-40906324 | None:intergenic |
| TATGCTGCTTCTAATGCCAA+CGG | 0.637155 | 8_3:+40905396 | Msa1288320:CDS |
| TGAGTGTAGGATTTGTCAGG+AGG | 0.657795 | 8_3:+40904000 | Msa1288320:CDS |
| GCCGGTGAATGAATCACCGG+CGG | 0.662712 | 8_3:-40903896 | None:intergenic |
| TGAATCAATGAGCGATCATG+TGG | 0.669095 | 8_3:+40903790 | Msa1288320:exon |
| GGATGATGACGATGTCGGCG+AGG | 0.685342 | 8_3:+40903946 | Msa1288320:CDS |
| GCAAGGTAAAAGAAAGCCAG+CGG | 0.689230 | 8_3:-40905843 | None:intergenic |
| CTACAATCTGGGCAGCATAG+GGG | 0.695813 | 8_3:+40906188 | Msa1288320:CDS |
| GTCGCTGAAGAAGAACCCGA+AGG | 0.704233 | 8_3:-40903923 | None:intergenic |
| GGTGGAATTTGGGAACAACG+TGG | 0.738538 | 8_3:-40903514 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTACAAATTAGAAA+AGG | - | chr8_3:40903726-40903745 | None:intergenic | 10.0% |
| !! | AAAAAATTACAAATTAGAAA+AGG | - | chr8_3:40903726-40903745 | None:intergenic | 10.0% |
| !!! | AAAAAATTAATTTGCTTACA+AGG | + | chr8_3:40904403-40904422 | Msa1288320:intron | 15.0% |
| !! | ATACAAATAATCAGTTAAAA+AGG | - | chr8_3:40905474-40905493 | None:intergenic | 15.0% |
| !! | TATAAACTTTATACAATTGA+TGG | + | chr8_3:40905749-40905768 | Msa1288320:intron | 15.0% |
| !! | ATAAACTTTATACAATTGAT+GGG | + | chr8_3:40905750-40905769 | Msa1288320:intron | 15.0% |
| !! | TTAAAATGAAATTAGATTGA+GGG | - | chr8_3:40906398-40906417 | None:intergenic | 15.0% |
| !!! | TTTAAAATGAAATTAGATTG+AGG | - | chr8_3:40906399-40906418 | None:intergenic | 15.0% |
| !!! | AAAAAATTAATTTGCTTACA+AGG | + | chr8_3:40904403-40904422 | Msa1288320:intron | 15.0% |
| !! | ATACAAATAATCAGTTAAAA+AGG | - | chr8_3:40905474-40905493 | None:intergenic | 15.0% |
| !! | TATAAACTTTATACAATTGA+TGG | + | chr8_3:40905749-40905768 | Msa1288320:intron | 15.0% |
| !! | ATAAACTTTATACAATTGAT+GGG | + | chr8_3:40905750-40905769 | Msa1288320:intron | 15.0% |
| !! | TTAAAATGAAATTAGATTGA+GGG | - | chr8_3:40906398-40906417 | None:intergenic | 15.0% |
| !!! | TTTAAAATGAAATTAGATTG+AGG | - | chr8_3:40906399-40906418 | None:intergenic | 15.0% |
| !! | TTTAATCACATAGATAATTG+CGG | + | chr8_3:40904495-40904514 | Msa1288320:intron | 20.0% |
| !! | ATGTATATCATAACATTGTA+TGG | + | chr8_3:40904896-40904915 | Msa1288320:intron | 20.0% |
| !! | AACTGATTATTTGTATAATC+CGG | + | chr8_3:40905478-40905497 | Msa1288320:intron | 20.0% |
| !!! | ATTCTTATCATTTCATGTTT+TGG | + | chr8_3:40906118-40906137 | Msa1288320:intron | 20.0% |
| !! | ATTCTGTTCAAAAAAGATAT+TGG | + | chr8_3:40906497-40906516 | Msa1288320:three_prime_UTR | 20.0% |
| !! | TTTAATCACATAGATAATTG+CGG | + | chr8_3:40904495-40904514 | Msa1288320:intron | 20.0% |
| !! | ATGTATATCATAACATTGTA+TGG | + | chr8_3:40904896-40904915 | Msa1288320:intron | 20.0% |
| !! | AACTGATTATTTGTATAATC+CGG | + | chr8_3:40905478-40905497 | Msa1288320:intron | 20.0% |
| !!! | ATTCTTATCATTTCATGTTT+TGG | + | chr8_3:40906118-40906137 | Msa1288320:intron | 20.0% |
| !! | ATTCTGTTCAAAAAAGATAT+TGG | + | chr8_3:40906497-40906516 | Msa1288320:three_prime_UTR | 20.0% |
| ! | TACAAATTAGAAAAGGAAGA+AGG | - | chr8_3:40903719-40903738 | None:intergenic | 25.0% |
| !! | TGTTGTAAATTTCGTGTTTT+AGG | + | chr8_3:40904105-40904124 | Msa1288320:intron | 25.0% |
| !!! | TTTTTTTATGAAATGACGCA+TGG | + | chr8_3:40904182-40904201 | Msa1288320:intron | 25.0% |
| ! | AATTTGATTCTGTTATGCTT+TGG | + | chr8_3:40904242-40904261 | Msa1288320:intron | 25.0% |
| ! | TAAGAATTAACATAGCAAAG+TGG | + | chr8_3:40904526-40904545 | Msa1288320:intron | 25.0% |
| ! | AAGAATTAACATAGCAAAGT+GGG | + | chr8_3:40904527-40904546 | Msa1288320:intron | 25.0% |
| ! | TTATGTAAGTGTCAAAAGAT+TGG | - | chr8_3:40904638-40904657 | None:intergenic | 25.0% |
| ! | AACATGTGAAATTTGTCATA+AGG | + | chr8_3:40904848-40904867 | Msa1288320:CDS | 25.0% |
| !!! | CATTGTATGGTTTTGTTTAT+AGG | + | chr8_3:40904909-40904928 | Msa1288320:intron | 25.0% |
| ! | AAGAAACTACCATTGATATA+GGG | + | chr8_3:40905136-40905155 | Msa1288320:CDS | 25.0% |
| ! | TTAATCTTACCCTATATCAA+TGG | - | chr8_3:40905148-40905167 | None:intergenic | 25.0% |
| ! | TGTATAACCATAATTCTTGA+GGG | - | chr8_3:40905194-40905213 | None:intergenic | 25.0% |
| ! | ATGTATAACCATAATTCTTG+AGG | - | chr8_3:40905195-40905214 | None:intergenic | 25.0% |
| ! | CATTTACAAAATTGTATGTC+TGG | - | chr8_3:40905519-40905538 | None:intergenic | 25.0% |
| !! | CAATTTTGTAAATGAACTCT+AGG | + | chr8_3:40905525-40905544 | Msa1288320:intron | 25.0% |
| ! | TTATAAACTACATAGACAGA+AGG | - | chr8_3:40905734-40905753 | None:intergenic | 25.0% |
| ! | TTTCGTAAATAACAATGTCT+AGG | - | chr8_3:40905969-40905988 | None:intergenic | 25.0% |
| ! | TGAAATGATAAGAATACTGT+AGG | - | chr8_3:40906113-40906132 | None:intergenic | 25.0% |
| !!! | ATTTCATGTTTTGGTAATAC+AGG | + | chr8_3:40906127-40906146 | Msa1288320:intron | 25.0% |
| !! | TTCAACAAGTCAATTTTACA+TGG | - | chr8_3:40906301-40906320 | None:intergenic | 25.0% |
| ! | AGTTATATTAGAATTAGAGC+CGG | - | chr8_3:40906353-40906372 | None:intergenic | 25.0% |
| ! | TACAAATTAGAAAAGGAAGA+AGG | - | chr8_3:40903719-40903738 | None:intergenic | 25.0% |
| !! | TGTTGTAAATTTCGTGTTTT+AGG | + | chr8_3:40904105-40904124 | Msa1288320:intron | 25.0% |
| !!! | TTTTTTTATGAAATGACGCA+TGG | + | chr8_3:40904182-40904201 | Msa1288320:intron | 25.0% |
| ! | AATTTGATTCTGTTATGCTT+TGG | + | chr8_3:40904242-40904261 | Msa1288320:intron | 25.0% |
| ! | TAAGAATTAACATAGCAAAG+TGG | + | chr8_3:40904526-40904545 | Msa1288320:intron | 25.0% |
| ! | AAGAATTAACATAGCAAAGT+GGG | + | chr8_3:40904527-40904546 | Msa1288320:intron | 25.0% |
| ! | TTATGTAAGTGTCAAAAGAT+TGG | - | chr8_3:40904638-40904657 | None:intergenic | 25.0% |
| ! | AACATGTGAAATTTGTCATA+AGG | + | chr8_3:40904848-40904867 | Msa1288320:CDS | 25.0% |
| !!! | CATTGTATGGTTTTGTTTAT+AGG | + | chr8_3:40904909-40904928 | Msa1288320:intron | 25.0% |
| ! | AAGAAACTACCATTGATATA+GGG | + | chr8_3:40905136-40905155 | Msa1288320:CDS | 25.0% |
| ! | TTAATCTTACCCTATATCAA+TGG | - | chr8_3:40905148-40905167 | None:intergenic | 25.0% |
| ! | TGTATAACCATAATTCTTGA+GGG | - | chr8_3:40905194-40905213 | None:intergenic | 25.0% |
| ! | ATGTATAACCATAATTCTTG+AGG | - | chr8_3:40905195-40905214 | None:intergenic | 25.0% |
| ! | CATTTACAAAATTGTATGTC+TGG | - | chr8_3:40905519-40905538 | None:intergenic | 25.0% |
| !! | CAATTTTGTAAATGAACTCT+AGG | + | chr8_3:40905525-40905544 | Msa1288320:intron | 25.0% |
| ! | TTATAAACTACATAGACAGA+AGG | - | chr8_3:40905734-40905753 | None:intergenic | 25.0% |
| ! | TTTCGTAAATAACAATGTCT+AGG | - | chr8_3:40905969-40905988 | None:intergenic | 25.0% |
| ! | TGAAATGATAAGAATACTGT+AGG | - | chr8_3:40906113-40906132 | None:intergenic | 25.0% |
| !!! | ATTTCATGTTTTGGTAATAC+AGG | + | chr8_3:40906127-40906146 | Msa1288320:intron | 25.0% |
| !! | TTCAACAAGTCAATTTTACA+TGG | - | chr8_3:40906301-40906320 | None:intergenic | 25.0% |
| ! | AGTTATATTAGAATTAGAGC+CGG | - | chr8_3:40906353-40906372 | None:intergenic | 25.0% |
| AACGTGGAAAAGGATATTAT+AGG | - | chr8_3:40903501-40903520 | None:intergenic | 30.0% | |
| ! | TGATGTTAGAGCGTTATTAT+TGG | + | chr8_3:40904331-40904350 | Msa1288320:intron | 30.0% |
| ! | GGATATTGATTAGATGTGAT+TGG | + | chr8_3:40904548-40904567 | Msa1288320:intron | 30.0% |
| !!! | GTATGGTTTTGTTTATAGGT+AGG | + | chr8_3:40904913-40904932 | Msa1288320:intron | 30.0% |
| AGCAATATAATCAGGTTCAT+AGG | - | chr8_3:40905094-40905113 | None:intergenic | 30.0% | |
| ATATCAATGGTAGTTTCTTC+AGG | - | chr8_3:40905135-40905154 | None:intergenic | 30.0% | |
| GAAGAAACTACCATTGATAT+AGG | + | chr8_3:40905135-40905154 | Msa1288320:CDS | 30.0% | |
| ! | TTTGAAACTTCTGTACTCAT+TGG | + | chr8_3:40905248-40905267 | Msa1288320:intron | 30.0% |
| CTTACAGAGAAAAACATAGA+TGG | - | chr8_3:40905700-40905719 | None:intergenic | 30.0% | |
| !! | TCTTTTACCTTGCTATATCA+TGG | + | chr8_3:40905853-40905872 | Msa1288320:CDS | 30.0% |
| ATACAAACTACACTTGTTCT+TGG | - | chr8_3:40906262-40906281 | None:intergenic | 30.0% | |
| ! | AAGAACAAGTGTAGTTTGTA+TGG | + | chr8_3:40906261-40906280 | Msa1288320:exon | 30.0% |
| ! | AAGTGTAGTTTGTATGGAAA+TGG | + | chr8_3:40906267-40906286 | Msa1288320:exon | 30.0% |
| GTTATATTAGAATTAGAGCC+GGG | - | chr8_3:40906352-40906371 | None:intergenic | 30.0% | |
| AACGTGGAAAAGGATATTAT+AGG | - | chr8_3:40903501-40903520 | None:intergenic | 30.0% | |
| ! | TGATGTTAGAGCGTTATTAT+TGG | + | chr8_3:40904331-40904350 | Msa1288320:intron | 30.0% |
| ! | GGATATTGATTAGATGTGAT+TGG | + | chr8_3:40904548-40904567 | Msa1288320:intron | 30.0% |
| !!! | GTATGGTTTTGTTTATAGGT+AGG | + | chr8_3:40904913-40904932 | Msa1288320:intron | 30.0% |
| AGCAATATAATCAGGTTCAT+AGG | - | chr8_3:40905094-40905113 | None:intergenic | 30.0% | |
| ATATCAATGGTAGTTTCTTC+AGG | - | chr8_3:40905135-40905154 | None:intergenic | 30.0% | |
| GAAGAAACTACCATTGATAT+AGG | + | chr8_3:40905135-40905154 | Msa1288320:CDS | 30.0% | |
| ! | TTTGAAACTTCTGTACTCAT+TGG | + | chr8_3:40905248-40905267 | Msa1288320:intron | 30.0% |
| CTTACAGAGAAAAACATAGA+TGG | - | chr8_3:40905700-40905719 | None:intergenic | 30.0% | |
| !! | TCTTTTACCTTGCTATATCA+TGG | + | chr8_3:40905853-40905872 | Msa1288320:CDS | 30.0% |
| ATACAAACTACACTTGTTCT+TGG | - | chr8_3:40906262-40906281 | None:intergenic | 30.0% | |
| ! | AAGAACAAGTGTAGTTTGTA+TGG | + | chr8_3:40906261-40906280 | Msa1288320:exon | 30.0% |
| ! | AAGTGTAGTTTGTATGGAAA+TGG | + | chr8_3:40906267-40906286 | Msa1288320:exon | 30.0% |
| GTTATATTAGAATTAGAGCC+GGG | - | chr8_3:40906352-40906371 | None:intergenic | 30.0% | |
| GAAAGGTTAACGTTAGTGTT+CGG | - | chr8_3:40903541-40903560 | None:intergenic | 35.0% | |
| GCGTATATATAGGAAGAGAA+AGG | - | chr8_3:40903558-40903577 | None:intergenic | 35.0% | |
| ATTGGATTCGGCGTATATAT+AGG | - | chr8_3:40903568-40903587 | None:intergenic | 35.0% | |
| GTTTATAGAGCGAGAAAGAA+GGG | - | chr8_3:40903601-40903620 | None:intergenic | 35.0% | |
| AAAAAGGGAAGAGACAAGAA+GGG | - | chr8_3:40903623-40903642 | None:intergenic | 35.0% | |
| ! | TTGTCTCTTCCCTTTTTCTT+CGG | + | chr8_3:40903626-40903645 | Msa1288320:five_prime_UTR | 35.0% |
| TTGATTCTGTTATGCTTTGG+TGG | + | chr8_3:40904245-40904264 | Msa1288320:intron | 35.0% | |
| CATTAATCTTGCCAAGTCTA+TGG | - | chr8_3:40904435-40904454 | None:intergenic | 35.0% | |
| TCAAACACTCTCTTAGTAAC+CGG | + | chr8_3:40904693-40904712 | Msa1288320:intron | 35.0% | |
| TTAGGAGGACATAAATAGAG+AGG | - | chr8_3:40904749-40904768 | None:intergenic | 35.0% | |
| TATCCAGCAGTTCGTAAATT+AGG | - | chr8_3:40904767-40904786 | None:intergenic | 35.0% | |
| TAGTCTTCCCTCAAGAATTA+TGG | + | chr8_3:40905184-40905203 | Msa1288320:intron | 35.0% | |
| AATTGTGAACATTCTTGCAG+CGG | + | chr8_3:40905273-40905292 | Msa1288320:intron | 35.0% | |
| CATATTCAGCTTCGAAGAAT+TGG | - | chr8_3:40905371-40905390 | None:intergenic | 35.0% | |
| TTCTTCGAAGCTGAATATGA+TGG | + | chr8_3:40905372-40905391 | Msa1288320:CDS | 35.0% | |
| ATCAGTTAAAAAGGACTGCT+TGG | - | chr8_3:40905465-40905484 | None:intergenic | 35.0% | |
| ! | TCATGCACATTGACTATGAT+AGG | + | chr8_3:40905552-40905571 | Msa1288320:intron | 35.0% |
| ! | CATGCACATTGACTATGATA+GGG | + | chr8_3:40905553-40905572 | Msa1288320:intron | 35.0% |
| AAGCCTAATTCATTCTGTTC+TGG | + | chr8_3:40905606-40905625 | Msa1288320:intron | 35.0% | |
| TGCTTTCAAATATGTTGTCG+AGG | + | chr8_3:40905774-40905793 | Msa1288320:intron | 35.0% | |
| ! | CAATCAGTATTTTGCAACGA+CGG | + | chr8_3:40905882-40905901 | Msa1288320:CDS | 35.0% |
| ! | GTCTAGGACATGAACAAATA+TGG | - | chr8_3:40905953-40905972 | None:intergenic | 35.0% |
| ACGTCTTTGATCTTAAGTGT+CGG | + | chr8_3:40906016-40906035 | Msa1288320:intron | 35.0% | |
| ! | ATATCTCTTGCTCCTTTTTC+CGG | + | chr8_3:40906061-40906080 | Msa1288320:intron | 35.0% |
| !!! | TCATGTTTTGGTAATACAGG+AGG | + | chr8_3:40906130-40906149 | Msa1288320:intron | 35.0% |
| GAAAGGTTAACGTTAGTGTT+CGG | - | chr8_3:40903541-40903560 | None:intergenic | 35.0% | |
| GCGTATATATAGGAAGAGAA+AGG | - | chr8_3:40903558-40903577 | None:intergenic | 35.0% | |
| ATTGGATTCGGCGTATATAT+AGG | - | chr8_3:40903568-40903587 | None:intergenic | 35.0% | |
| GTTTATAGAGCGAGAAAGAA+GGG | - | chr8_3:40903601-40903620 | None:intergenic | 35.0% | |
| AAAAAGGGAAGAGACAAGAA+GGG | - | chr8_3:40903623-40903642 | None:intergenic | 35.0% | |
| ! | TTGTCTCTTCCCTTTTTCTT+CGG | + | chr8_3:40903626-40903645 | Msa1288320:five_prime_UTR | 35.0% |
| TTGATTCTGTTATGCTTTGG+TGG | + | chr8_3:40904245-40904264 | Msa1288320:intron | 35.0% | |
| CATTAATCTTGCCAAGTCTA+TGG | - | chr8_3:40904435-40904454 | None:intergenic | 35.0% | |
| TCAAACACTCTCTTAGTAAC+CGG | + | chr8_3:40904693-40904712 | Msa1288320:intron | 35.0% | |
| TTAGGAGGACATAAATAGAG+AGG | - | chr8_3:40904749-40904768 | None:intergenic | 35.0% | |
| TATCCAGCAGTTCGTAAATT+AGG | - | chr8_3:40904767-40904786 | None:intergenic | 35.0% | |
| TAGTCTTCCCTCAAGAATTA+TGG | + | chr8_3:40905184-40905203 | Msa1288320:intron | 35.0% | |
| AATTGTGAACATTCTTGCAG+CGG | + | chr8_3:40905273-40905292 | Msa1288320:intron | 35.0% | |
| CATATTCAGCTTCGAAGAAT+TGG | - | chr8_3:40905371-40905390 | None:intergenic | 35.0% | |
| TTCTTCGAAGCTGAATATGA+TGG | + | chr8_3:40905372-40905391 | Msa1288320:CDS | 35.0% | |
| ATCAGTTAAAAAGGACTGCT+TGG | - | chr8_3:40905465-40905484 | None:intergenic | 35.0% | |
| ! | TCATGCACATTGACTATGAT+AGG | + | chr8_3:40905552-40905571 | Msa1288320:intron | 35.0% |
| ! | CATGCACATTGACTATGATA+GGG | + | chr8_3:40905553-40905572 | Msa1288320:intron | 35.0% |
| AAGCCTAATTCATTCTGTTC+TGG | + | chr8_3:40905606-40905625 | Msa1288320:intron | 35.0% | |
| TGCTTTCAAATATGTTGTCG+AGG | + | chr8_3:40905774-40905793 | Msa1288320:intron | 35.0% | |
| ! | CAATCAGTATTTTGCAACGA+CGG | + | chr8_3:40905882-40905901 | Msa1288320:CDS | 35.0% |
| ! | GTCTAGGACATGAACAAATA+TGG | - | chr8_3:40905953-40905972 | None:intergenic | 35.0% |
| ACGTCTTTGATCTTAAGTGT+CGG | + | chr8_3:40906016-40906035 | Msa1288320:intron | 35.0% | |
| ! | ATATCTCTTGCTCCTTTTTC+CGG | + | chr8_3:40906061-40906080 | Msa1288320:intron | 35.0% |
| !!! | TCATGTTTTGGTAATACAGG+AGG | + | chr8_3:40906130-40906149 | Msa1288320:intron | 35.0% |
| ATTTGGGAACAACGTGGAAA+AGG | - | chr8_3:40903511-40903530 | None:intergenic | 40.0% | |
| GGAAGAGAGAGAATTGGATT+CGG | - | chr8_3:40903580-40903599 | None:intergenic | 40.0% | |
| AAGAAGGGAAGAGAGAGAAT+TGG | - | chr8_3:40903586-40903605 | None:intergenic | 40.0% | |
| GGTTTATAGAGCGAGAAAGA+AGG | - | chr8_3:40903602-40903621 | None:intergenic | 40.0% | |
| GAAAAAGGGAAGAGACAAGA+AGG | - | chr8_3:40903624-40903643 | None:intergenic | 40.0% | |
| ACAGACTCACCGAAGAAAAA+GGG | - | chr8_3:40903638-40903657 | None:intergenic | 40.0% | |
| TCACGATCTCGAGAAAATGA+AGG | - | chr8_3:40903669-40903688 | None:intergenic | 40.0% | |
| ! | GAAATTTTCTCGAGATCGTG+TGG | - | chr8_3:40903695-40903714 | None:intergenic | 40.0% |
| TGAATCAATGAGCGATCATG+TGG | + | chr8_3:40903790-40903809 | Msa1288320:exon | 40.0% | |
| !! | GGAGGATGGTATTGATAATC+TGG | + | chr8_3:40904021-40904040 | Msa1288320:CDS | 40.0% |
| ! | CAAGGTTTTCTCCATAGACT+TGG | + | chr8_3:40904421-40904440 | Msa1288320:intron | 40.0% |
| ! | CTCTATCTGTGTTTTGTGCA+AGG | - | chr8_3:40904603-40904622 | None:intergenic | 40.0% |
| CAAACACTCTCTTAGTAACC+GGG | + | chr8_3:40904694-40904713 | Msa1288320:intron | 40.0% | |
| !! | AATTCACACAGAGAGTGCTT+TGG | - | chr8_3:40905009-40905028 | None:intergenic | 40.0% |
| ATGGTAGTTTCTTCAGGATG+TGG | - | chr8_3:40905129-40905148 | None:intergenic | 40.0% | |
| AGCAATCTGTTTCAAGCTGA+TGG | + | chr8_3:40905216-40905235 | Msa1288320:intron | 40.0% | |
| ! | TATGCTGCTTCTAATGCCAA+CGG | + | chr8_3:40905396-40905415 | Msa1288320:CDS | 40.0% |
| GCACCAGAACAGAATGAATT+AGG | - | chr8_3:40905612-40905631 | None:intergenic | 40.0% | |
| TTCTGTTCTGGTGCAGTTAA+TGG | + | chr8_3:40905618-40905637 | Msa1288320:intron | 40.0% | |
| ! | TAATGGCCCTTTTACTCTTG+AGG | + | chr8_3:40905635-40905654 | Msa1288320:CDS | 40.0% |
| ! | TACCTTGCTATATCATGGCT+TGG | + | chr8_3:40905858-40905877 | Msa1288320:CDS | 40.0% |
| ! | ACCTTGCTATATCATGGCTT+GGG | + | chr8_3:40905859-40905878 | Msa1288320:CDS | 40.0% |
| ! | TATCTCTTGCTCCTTTTTCC+GGG | + | chr8_3:40906062-40906081 | Msa1288320:intron | 40.0% |
| TGTTGCATATTCCCGGAAAA+AGG | - | chr8_3:40906076-40906095 | None:intergenic | 40.0% | |
| ! | CTGCATTTGTTGCATATTCC+CGG | - | chr8_3:40906083-40906102 | None:intergenic | 40.0% |
| TTGTAGCACGAAAGCAACTT+GGG | - | chr8_3:40906174-40906193 | None:intergenic | 40.0% | |
| ATTGTAGCACGAAAGCAACT+TGG | - | chr8_3:40906175-40906194 | None:intergenic | 40.0% | |
| TTGCTTTCGTGCTACAATCT+GGG | + | chr8_3:40906177-40906196 | Msa1288320:CDS | 40.0% | |
| ! | ACTACACTTGTTCTTGGTGT+GGG | - | chr8_3:40906256-40906275 | None:intergenic | 40.0% |
| AACTACACTTGTTCTTGGTG+TGG | - | chr8_3:40906257-40906276 | None:intergenic | 40.0% | |
| AATGATGAGCAAGAGTAGCA+TGG | - | chr8_3:40906327-40906346 | None:intergenic | 40.0% | |
| ! | ACTCTTGCTCATCATTTTCC+CGG | + | chr8_3:40906331-40906350 | Msa1288320:three_prime_UTR | 40.0% |
| ATTTGGGAACAACGTGGAAA+AGG | - | chr8_3:40903511-40903530 | None:intergenic | 40.0% | |
| GGAAGAGAGAGAATTGGATT+CGG | - | chr8_3:40903580-40903599 | None:intergenic | 40.0% | |
| AAGAAGGGAAGAGAGAGAAT+TGG | - | chr8_3:40903586-40903605 | None:intergenic | 40.0% | |
| GGTTTATAGAGCGAGAAAGA+AGG | - | chr8_3:40903602-40903621 | None:intergenic | 40.0% | |
| GAAAAAGGGAAGAGACAAGA+AGG | - | chr8_3:40903624-40903643 | None:intergenic | 40.0% | |
| ACAGACTCACCGAAGAAAAA+GGG | - | chr8_3:40903638-40903657 | None:intergenic | 40.0% | |
| TCACGATCTCGAGAAAATGA+AGG | - | chr8_3:40903669-40903688 | None:intergenic | 40.0% | |
| ! | GAAATTTTCTCGAGATCGTG+TGG | - | chr8_3:40903695-40903714 | None:intergenic | 40.0% |
| TGAATCAATGAGCGATCATG+TGG | + | chr8_3:40903790-40903809 | Msa1288320:exon | 40.0% | |
| !! | GGAGGATGGTATTGATAATC+TGG | + | chr8_3:40904021-40904040 | Msa1288320:CDS | 40.0% |
| ! | CAAGGTTTTCTCCATAGACT+TGG | + | chr8_3:40904421-40904440 | Msa1288320:intron | 40.0% |
| ! | CTCTATCTGTGTTTTGTGCA+AGG | - | chr8_3:40904603-40904622 | None:intergenic | 40.0% |
| CAAACACTCTCTTAGTAACC+GGG | + | chr8_3:40904694-40904713 | Msa1288320:intron | 40.0% | |
| !! | AATTCACACAGAGAGTGCTT+TGG | - | chr8_3:40905009-40905028 | None:intergenic | 40.0% |
| ATGGTAGTTTCTTCAGGATG+TGG | - | chr8_3:40905129-40905148 | None:intergenic | 40.0% | |
| AGCAATCTGTTTCAAGCTGA+TGG | + | chr8_3:40905216-40905235 | Msa1288320:intron | 40.0% | |
| ! | TATGCTGCTTCTAATGCCAA+CGG | + | chr8_3:40905396-40905415 | Msa1288320:CDS | 40.0% |
| GCACCAGAACAGAATGAATT+AGG | - | chr8_3:40905612-40905631 | None:intergenic | 40.0% | |
| TTCTGTTCTGGTGCAGTTAA+TGG | + | chr8_3:40905618-40905637 | Msa1288320:intron | 40.0% | |
| ! | TAATGGCCCTTTTACTCTTG+AGG | + | chr8_3:40905635-40905654 | Msa1288320:CDS | 40.0% |
| ! | TACCTTGCTATATCATGGCT+TGG | + | chr8_3:40905858-40905877 | Msa1288320:CDS | 40.0% |
| ! | ACCTTGCTATATCATGGCTT+GGG | + | chr8_3:40905859-40905878 | Msa1288320:CDS | 40.0% |
| ! | TATCTCTTGCTCCTTTTTCC+GGG | + | chr8_3:40906062-40906081 | Msa1288320:intron | 40.0% |
| TGTTGCATATTCCCGGAAAA+AGG | - | chr8_3:40906076-40906095 | None:intergenic | 40.0% | |
| ! | CTGCATTTGTTGCATATTCC+CGG | - | chr8_3:40906083-40906102 | None:intergenic | 40.0% |
| TTGTAGCACGAAAGCAACTT+GGG | - | chr8_3:40906174-40906193 | None:intergenic | 40.0% | |
| ATTGTAGCACGAAAGCAACT+TGG | - | chr8_3:40906175-40906194 | None:intergenic | 40.0% | |
| TTGCTTTCGTGCTACAATCT+GGG | + | chr8_3:40906177-40906196 | Msa1288320:CDS | 40.0% | |
| ! | ACTACACTTGTTCTTGGTGT+GGG | - | chr8_3:40906256-40906275 | None:intergenic | 40.0% |
| AACTACACTTGTTCTTGGTG+TGG | - | chr8_3:40906257-40906276 | None:intergenic | 40.0% | |
| AATGATGAGCAAGAGTAGCA+TGG | - | chr8_3:40906327-40906346 | None:intergenic | 40.0% | |
| ! | ACTCTTGCTCATCATTTTCC+CGG | + | chr8_3:40906331-40906350 | Msa1288320:three_prime_UTR | 40.0% |
| !! | AGTGTTCGGTGGTGGAATTT+GGG | - | chr8_3:40903527-40903546 | None:intergenic | 45.0% |
| !! | TAGTGTTCGGTGGTGGAATT+TGG | - | chr8_3:40903528-40903547 | None:intergenic | 45.0% |
| ! | TTAACGTTAGTGTTCGGTGG+TGG | - | chr8_3:40903535-40903554 | None:intergenic | 45.0% |
| AGGTTAACGTTAGTGTTCGG+TGG | - | chr8_3:40903538-40903557 | None:intergenic | 45.0% | |
| GACAGACTCACCGAAGAAAA+AGG | - | chr8_3:40903639-40903658 | None:intergenic | 45.0% | |
| !! | CGATCATGTGGTGTTGTTTG+TGG | + | chr8_3:40903802-40903821 | Msa1288320:CDS | 45.0% |
| TGAGTGTAGGATTTGTCAGG+AGG | + | chr8_3:40904000-40904019 | Msa1288320:CDS | 45.0% | |
| TACCTTAAGACTTCCGCTAC+AGG | - | chr8_3:40904059-40904078 | None:intergenic | 45.0% | |
| TGCCTTTGTGTATGGGACAT+TGG | + | chr8_3:40904720-40904739 | Msa1288320:intron | 45.0% | |
| CACCAATGTCCCATACACAA+AGG | - | chr8_3:40904725-40904744 | None:intergenic | 45.0% | |
| CCAGCAGTTCGTAAATTAGG+AGG | - | chr8_3:40904764-40904783 | None:intergenic | 45.0% | |
| CCTCCTAATTTACGAACTGC+TGG | + | chr8_3:40904761-40904780 | Msa1288320:intron | 45.0% | |
| !! | GGTGGTGGAGCAATATAATC+AGG | - | chr8_3:40905102-40905121 | None:intergenic | 45.0% |
| TCTGCAATTGCCAACAATCG+AGG | - | chr8_3:40905339-40905358 | None:intergenic | 45.0% | |
| TCGATTGTTGGCAATTGCAG+AGG | + | chr8_3:40905338-40905357 | Msa1288320:CDS | 45.0% | |
| TTACGATCAGAGCAGCTGAA+CGG | - | chr8_3:40905434-40905453 | None:intergenic | 45.0% | |
| GGGTGCTAACACTTTACACT+TGG | + | chr8_3:40905573-40905592 | Msa1288320:intron | 45.0% | |
| GCAAGGTAAAAGAAAGCCAG+CGG | - | chr8_3:40905846-40905865 | None:intergenic | 45.0% | |
| ! | GTTGCTTTCGTGCTACAATC+TGG | + | chr8_3:40906176-40906195 | Msa1288320:CDS | 45.0% |
| !! | AGTGTTCGGTGGTGGAATTT+GGG | - | chr8_3:40903527-40903546 | None:intergenic | 45.0% |
| !! | TAGTGTTCGGTGGTGGAATT+TGG | - | chr8_3:40903528-40903547 | None:intergenic | 45.0% |
| ! | TTAACGTTAGTGTTCGGTGG+TGG | - | chr8_3:40903535-40903554 | None:intergenic | 45.0% |
| AGGTTAACGTTAGTGTTCGG+TGG | - | chr8_3:40903538-40903557 | None:intergenic | 45.0% | |
| GACAGACTCACCGAAGAAAA+AGG | - | chr8_3:40903639-40903658 | None:intergenic | 45.0% | |
| !! | CGATCATGTGGTGTTGTTTG+TGG | + | chr8_3:40903802-40903821 | Msa1288320:CDS | 45.0% |
| TGAGTGTAGGATTTGTCAGG+AGG | + | chr8_3:40904000-40904019 | Msa1288320:CDS | 45.0% | |
| TACCTTAAGACTTCCGCTAC+AGG | - | chr8_3:40904059-40904078 | None:intergenic | 45.0% | |
| TGCCTTTGTGTATGGGACAT+TGG | + | chr8_3:40904720-40904739 | Msa1288320:intron | 45.0% | |
| CACCAATGTCCCATACACAA+AGG | - | chr8_3:40904725-40904744 | None:intergenic | 45.0% | |
| CCAGCAGTTCGTAAATTAGG+AGG | - | chr8_3:40904764-40904783 | None:intergenic | 45.0% | |
| CCTCCTAATTTACGAACTGC+TGG | + | chr8_3:40904761-40904780 | Msa1288320:intron | 45.0% | |
| !! | GGTGGTGGAGCAATATAATC+AGG | - | chr8_3:40905102-40905121 | None:intergenic | 45.0% |
| TCTGCAATTGCCAACAATCG+AGG | - | chr8_3:40905339-40905358 | None:intergenic | 45.0% | |
| TCGATTGTTGGCAATTGCAG+AGG | + | chr8_3:40905338-40905357 | Msa1288320:CDS | 45.0% | |
| TTACGATCAGAGCAGCTGAA+CGG | - | chr8_3:40905434-40905453 | None:intergenic | 45.0% | |
| GGGTGCTAACACTTTACACT+TGG | + | chr8_3:40905573-40905592 | Msa1288320:intron | 45.0% | |
| GCAAGGTAAAAGAAAGCCAG+CGG | - | chr8_3:40905846-40905865 | None:intergenic | 45.0% | |
| ! | GTTGCTTTCGTGCTACAATC+TGG | + | chr8_3:40906176-40906195 | Msa1288320:CDS | 45.0% |
| !!! | ATAATAATAACTTTATTTAT+TGG | + | chr8_3:40906445-40906464 | Msa1288320:three_prime_UTR | 5.0% |
| !!! | ATAATAATAACTTTATTTAT+TGG | + | chr8_3:40906445-40906464 | Msa1288320:three_prime_UTR | 5.0% |
| GGTGGAATTTGGGAACAACG+TGG | - | chr8_3:40903517-40903536 | None:intergenic | 50.0% | |
| ! | TTCGGGTTCTTCTTCAGCGA+CGG | + | chr8_3:40903925-40903944 | Msa1288320:CDS | 50.0% |
| ATCTCCATCTGCTGCAACAG+CGG | - | chr8_3:40903977-40903996 | None:intergenic | 50.0% | |
| AGATGGAGATGGCTGAGTGT+AGG | + | chr8_3:40903987-40904006 | Msa1288320:CDS | 50.0% | |
| GGCTGAGTGTAGGATTTGTC+AGG | + | chr8_3:40903997-40904016 | Msa1288320:CDS | 50.0% | |
| GTGTAGGATTTGTCAGGAGG+AGG | + | chr8_3:40904003-40904022 | Msa1288320:CDS | 50.0% | |
| AGGATTTGTCAGGAGGAGGA+TGG | + | chr8_3:40904007-40904026 | Msa1288320:CDS | 50.0% | |
| GAAAATCCTTGCGCCTGTAG+CGG | + | chr8_3:40904043-40904062 | Msa1288320:CDS | 50.0% | |
| !! | CCATACACAAAGGCATTGCC+CGG | - | chr8_3:40904715-40904734 | None:intergenic | 50.0% |
| CGGGCAATGCCTTTGTGTAT+GGG | + | chr8_3:40904713-40904732 | Msa1288320:intron | 50.0% | |
| ! | ATAGAAAGTGCGTCCAACGC+TGG | + | chr8_3:40904805-40904824 | Msa1288320:CDS | 50.0% |
| !! | CTTTTTCGTTGCACCAGCGT+TGG | - | chr8_3:40904821-40904840 | None:intergenic | 50.0% |
| CAACGCTGGTGCAACGAAAA+AGG | + | chr8_3:40904819-40904838 | Msa1288320:CDS | 50.0% | |
| GTTTCTTCAGGATGTGGACG+AGG | - | chr8_3:40905123-40905142 | None:intergenic | 50.0% | |
| TGTGAACATTCTTGCAGCGG+AGG | + | chr8_3:40905276-40905295 | Msa1288320:intron | 50.0% | |
| CTTGCGTGATCCTCGATTGT+TGG | + | chr8_3:40905326-40905345 | Msa1288320:CDS | 50.0% | |
| CTGGTGCGCATATACATGAC+CGG | - | chr8_3:40905500-40905519 | None:intergenic | 50.0% | |
| CGCGTGCCTCAAGAGTAAAA+GGG | - | chr8_3:40905644-40905663 | None:intergenic | 50.0% | |
| GCCCAAGCCATGATATAGCA+AGG | - | chr8_3:40905863-40905882 | None:intergenic | 50.0% | |
| AATACAGGAGGCTGCAGCAT+TGG | + | chr8_3:40906142-40906161 | Msa1288320:intron | 50.0% | |
| TGCTACAATCTGGGCAGCAT+AGG | + | chr8_3:40906186-40906205 | Msa1288320:CDS | 50.0% | |
| GCTACAATCTGGGCAGCATA+GGG | + | chr8_3:40906187-40906206 | Msa1288320:CDS | 50.0% | |
| CTACAATCTGGGCAGCATAG+GGG | + | chr8_3:40906188-40906207 | Msa1288320:CDS | 50.0% | |
| ! | ACTTGTTCTTGGTGTGGGTG+CGG | - | chr8_3:40906251-40906270 | None:intergenic | 50.0% |
| GGTGGAATTTGGGAACAACG+TGG | - | chr8_3:40903517-40903536 | None:intergenic | 50.0% | |
| ! | TTCGGGTTCTTCTTCAGCGA+CGG | + | chr8_3:40903925-40903944 | Msa1288320:CDS | 50.0% |
| ATCTCCATCTGCTGCAACAG+CGG | - | chr8_3:40903977-40903996 | None:intergenic | 50.0% | |
| AGATGGAGATGGCTGAGTGT+AGG | + | chr8_3:40903987-40904006 | Msa1288320:CDS | 50.0% | |
| GGCTGAGTGTAGGATTTGTC+AGG | + | chr8_3:40903997-40904016 | Msa1288320:CDS | 50.0% | |
| GTGTAGGATTTGTCAGGAGG+AGG | + | chr8_3:40904003-40904022 | Msa1288320:CDS | 50.0% | |
| AGGATTTGTCAGGAGGAGGA+TGG | + | chr8_3:40904007-40904026 | Msa1288320:CDS | 50.0% | |
| GAAAATCCTTGCGCCTGTAG+CGG | + | chr8_3:40904043-40904062 | Msa1288320:CDS | 50.0% | |
| !! | CCATACACAAAGGCATTGCC+CGG | - | chr8_3:40904715-40904734 | None:intergenic | 50.0% |
| CGGGCAATGCCTTTGTGTAT+GGG | + | chr8_3:40904713-40904732 | Msa1288320:intron | 50.0% | |
| ! | ATAGAAAGTGCGTCCAACGC+TGG | + | chr8_3:40904805-40904824 | Msa1288320:CDS | 50.0% |
| !! | CTTTTTCGTTGCACCAGCGT+TGG | - | chr8_3:40904821-40904840 | None:intergenic | 50.0% |
| CAACGCTGGTGCAACGAAAA+AGG | + | chr8_3:40904819-40904838 | Msa1288320:CDS | 50.0% | |
| GTTTCTTCAGGATGTGGACG+AGG | - | chr8_3:40905123-40905142 | None:intergenic | 50.0% | |
| TGTGAACATTCTTGCAGCGG+AGG | + | chr8_3:40905276-40905295 | Msa1288320:intron | 50.0% | |
| CTTGCGTGATCCTCGATTGT+TGG | + | chr8_3:40905326-40905345 | Msa1288320:CDS | 50.0% | |
| CTGGTGCGCATATACATGAC+CGG | - | chr8_3:40905500-40905519 | None:intergenic | 50.0% | |
| CGCGTGCCTCAAGAGTAAAA+GGG | - | chr8_3:40905644-40905663 | None:intergenic | 50.0% | |
| GCCCAAGCCATGATATAGCA+AGG | - | chr8_3:40905863-40905882 | None:intergenic | 50.0% | |
| AATACAGGAGGCTGCAGCAT+TGG | + | chr8_3:40906142-40906161 | Msa1288320:intron | 50.0% | |
| TGCTACAATCTGGGCAGCAT+AGG | + | chr8_3:40906186-40906205 | Msa1288320:CDS | 50.0% | |
| GCTACAATCTGGGCAGCATA+GGG | + | chr8_3:40906187-40906206 | Msa1288320:CDS | 50.0% | |
| CTACAATCTGGGCAGCATAG+GGG | + | chr8_3:40906188-40906207 | Msa1288320:CDS | 50.0% | |
| ! | ACTTGTTCTTGGTGTGGGTG+CGG | - | chr8_3:40906251-40906270 | None:intergenic | 50.0% |
| !! | CCGGCATCGGTCGCATTAAT+CGG | - | chr8_3:40903829-40903848 | None:intergenic | 55.0% |
| CCGATTAATGCGACCGATGC+CGG | + | chr8_3:40903826-40903845 | Msa1288320:CDS | 55.0% | |
| TGTTGAGCCAACGGCTCAAC+CGG | - | chr8_3:40903848-40903867 | None:intergenic | 55.0% | |
| !! | TGAGCCGTTGGCTCAACATC+CGG | + | chr8_3:40903850-40903869 | Msa1288320:CDS | 55.0% |
| TGAGCCGGATGTTGAGCCAA+CGG | - | chr8_3:40903857-40903876 | None:intergenic | 55.0% | |
| GAATGAATCACCGGCGGCAT+CGG | - | chr8_3:40903893-40903912 | None:intergenic | 55.0% | |
| CCAGCCGGTGAATGAATCAC+CGG | - | chr8_3:40903902-40903921 | None:intergenic | 55.0% | |
| ! | CGGTGATTCATTCACCGGCT+GGG | + | chr8_3:40903900-40903919 | Msa1288320:CDS | 55.0% |
| GTCGCTGAAGAAGAACCCGA+AGG | - | chr8_3:40903926-40903945 | None:intergenic | 55.0% | |
| ! | GCGACGGATGATGACGATGT+CGG | + | chr8_3:40903941-40903960 | Msa1288320:CDS | 55.0% |
| GCTGTTGCAGCAGATGGAGA+TGG | + | chr8_3:40903976-40903995 | Msa1288320:CDS | 55.0% | |
| ! | CGCCTGTAGCGGAAGTCTTA+AGG | + | chr8_3:40904054-40904073 | Msa1288320:CDS | 55.0% |
| CCGGGCAATGCCTTTGTGTA+TGG | + | chr8_3:40904712-40904731 | Msa1288320:intron | 55.0% | |
| TCTTCAGGATGTGGACGAGG+TGG | - | chr8_3:40905120-40905139 | None:intergenic | 55.0% | |
| AACATTCTTGCAGCGGAGGC+TGG | + | chr8_3:40905280-40905299 | Msa1288320:intron | 55.0% | |
| CGAGGATCACGCAAGTCCAA+AGG | - | chr8_3:40905321-40905340 | None:intergenic | 55.0% | |
| ACGGCAAAATGCAGCTCCGT+TGG | - | chr8_3:40905415-40905434 | None:intergenic | 55.0% | |
| GCGCGTGCCTCAAGAGTAAA+AGG | - | chr8_3:40905645-40905664 | None:intergenic | 55.0% | |
| ! | CTTTTCTTGCTTCGAGCCGC+TGG | + | chr8_3:40905827-40905846 | Msa1288320:CDS | 55.0% |
| ! | CACGGTTGCTGCTGGTGTTA+TGG | - | chr8_3:40906225-40906244 | None:intergenic | 55.0% |
| TTGGTGTGGGTGCGGATTCA+CGG | - | chr8_3:40906243-40906262 | None:intergenic | 55.0% | |
| !! | CCGGCATCGGTCGCATTAAT+CGG | - | chr8_3:40903829-40903848 | None:intergenic | 55.0% |
| CCGATTAATGCGACCGATGC+CGG | + | chr8_3:40903826-40903845 | Msa1288320:CDS | 55.0% | |
| TGTTGAGCCAACGGCTCAAC+CGG | - | chr8_3:40903848-40903867 | None:intergenic | 55.0% | |
| !! | TGAGCCGTTGGCTCAACATC+CGG | + | chr8_3:40903850-40903869 | Msa1288320:CDS | 55.0% |
| TGAGCCGGATGTTGAGCCAA+CGG | - | chr8_3:40903857-40903876 | None:intergenic | 55.0% | |
| GAATGAATCACCGGCGGCAT+CGG | - | chr8_3:40903893-40903912 | None:intergenic | 55.0% | |
| CCAGCCGGTGAATGAATCAC+CGG | - | chr8_3:40903902-40903921 | None:intergenic | 55.0% | |
| ! | CGGTGATTCATTCACCGGCT+GGG | + | chr8_3:40903900-40903919 | Msa1288320:CDS | 55.0% |
| GTCGCTGAAGAAGAACCCGA+AGG | - | chr8_3:40903926-40903945 | None:intergenic | 55.0% | |
| ! | GCGACGGATGATGACGATGT+CGG | + | chr8_3:40903941-40903960 | Msa1288320:CDS | 55.0% |
| GCTGTTGCAGCAGATGGAGA+TGG | + | chr8_3:40903976-40903995 | Msa1288320:CDS | 55.0% | |
| ! | CGCCTGTAGCGGAAGTCTTA+AGG | + | chr8_3:40904054-40904073 | Msa1288320:CDS | 55.0% |
| CCGGGCAATGCCTTTGTGTA+TGG | + | chr8_3:40904712-40904731 | Msa1288320:intron | 55.0% | |
| TCTTCAGGATGTGGACGAGG+TGG | - | chr8_3:40905120-40905139 | None:intergenic | 55.0% | |
| AACATTCTTGCAGCGGAGGC+TGG | + | chr8_3:40905280-40905299 | Msa1288320:intron | 55.0% | |
| CGAGGATCACGCAAGTCCAA+AGG | - | chr8_3:40905321-40905340 | None:intergenic | 55.0% | |
| ACGGCAAAATGCAGCTCCGT+TGG | - | chr8_3:40905415-40905434 | None:intergenic | 55.0% | |
| GCGCGTGCCTCAAGAGTAAA+AGG | - | chr8_3:40905645-40905664 | None:intergenic | 55.0% | |
| ! | CTTTTCTTGCTTCGAGCCGC+TGG | + | chr8_3:40905827-40905846 | Msa1288320:CDS | 55.0% |
| ! | CACGGTTGCTGCTGGTGTTA+TGG | - | chr8_3:40906225-40906244 | None:intergenic | 55.0% |
| TTGGTGTGGGTGCGGATTCA+CGG | - | chr8_3:40906243-40906262 | None:intergenic | 55.0% | |
| GCCGCCGGTGATTCATTCAC+CGG | + | chr8_3:40903895-40903914 | Msa1288320:CDS | 60.0% | |
| GCCGGTGAATGAATCACCGG+CGG | - | chr8_3:40903899-40903918 | None:intergenic | 60.0% | |
| CCGGTGATTCATTCACCGGC+TGG | + | chr8_3:40903899-40903918 | Msa1288320:CDS | 60.0% | |
| ! | TCATTCACCGGCTGGGCCTT+CGG | + | chr8_3:40903907-40903926 | Msa1288320:CDS | 60.0% |
| ! | GGATGATGACGATGTCGGCG+AGG | + | chr8_3:40903946-40903965 | Msa1288320:CDS | 60.0% |
| AGACTTCCGCTACAGGCGCA+AGG | - | chr8_3:40904052-40904071 | None:intergenic | 60.0% | |
| TCAGGATGTGGACGAGGTGG+TGG | - | chr8_3:40905117-40905136 | None:intergenic | 60.0% | |
| GACACTCTCTGGCACGCCTT+TGG | + | chr8_3:40905302-40905321 | Msa1288320:CDS | 60.0% | |
| GAGGCACGCGCTTTCTGTCA+CGG | + | chr8_3:40905654-40905673 | Msa1288320:CDS | 60.0% | |
| ! | ACAGGAGGCTGCAGCATTGG+CGG | + | chr8_3:40906145-40906164 | Msa1288320:intron | 60.0% |
| TGCGGATTCACGGTTGCTGC+TGG | - | chr8_3:40906233-40906252 | None:intergenic | 60.0% | |
| GCCGCCGGTGATTCATTCAC+CGG | + | chr8_3:40903895-40903914 | Msa1288320:CDS | 60.0% | |
| GCCGGTGAATGAATCACCGG+CGG | - | chr8_3:40903899-40903918 | None:intergenic | 60.0% | |
| CCGGTGATTCATTCACCGGC+TGG | + | chr8_3:40903899-40903918 | Msa1288320:CDS | 60.0% | |
| ! | TCATTCACCGGCTGGGCCTT+CGG | + | chr8_3:40903907-40903926 | Msa1288320:CDS | 60.0% |
| ! | GGATGATGACGATGTCGGCG+AGG | + | chr8_3:40903946-40903965 | Msa1288320:CDS | 60.0% |
| AGACTTCCGCTACAGGCGCA+AGG | - | chr8_3:40904052-40904071 | None:intergenic | 60.0% | |
| TCAGGATGTGGACGAGGTGG+TGG | - | chr8_3:40905117-40905136 | None:intergenic | 60.0% | |
| GACACTCTCTGGCACGCCTT+TGG | + | chr8_3:40905302-40905321 | Msa1288320:CDS | 60.0% | |
| GAGGCACGCGCTTTCTGTCA+CGG | + | chr8_3:40905654-40905673 | Msa1288320:CDS | 60.0% | |
| ! | ACAGGAGGCTGCAGCATTGG+CGG | + | chr8_3:40906145-40906164 | Msa1288320:intron | 60.0% |
| TGCGGATTCACGGTTGCTGC+TGG | - | chr8_3:40906233-40906252 | None:intergenic | 60.0% | |
| ! | ACCGATGCCGGTTGAGCCGT+TGG | + | chr8_3:40903838-40903857 | Msa1288320:CDS | 65.0% |
| GCCAACGGCTCAACCGGCAT+CGG | - | chr8_3:40903842-40903861 | None:intergenic | 65.0% | |
| GGTTCAGGAGCAGGCTGAGC+CGG | - | chr8_3:40903872-40903891 | None:intergenic | 65.0% | |
| TGCTCCTGAACCGATGCCGC+CGG | + | chr8_3:40903880-40903899 | Msa1288320:CDS | 65.0% | |
| !! | ATCACCGGCGGCATCGGTTC+AGG | - | chr8_3:40903887-40903906 | None:intergenic | 65.0% |
| ! | CATTCACCGGCTGGGCCTTC+GGG | + | chr8_3:40903908-40903927 | Msa1288320:CDS | 65.0% |
| GAAGAACCCGAAGGCCCAGC+CGG | - | chr8_3:40903917-40903936 | None:intergenic | 65.0% | |
| CGAGCCGCTGTTGCAGCAGA+TGG | + | chr8_3:40903970-40903989 | Msa1288320:CDS | 65.0% | |
| AGCGGAGGCTGGACACTCTC+TGG | + | chr8_3:40905291-40905310 | Msa1288320:intron | 65.0% | |
| ! | ACCGATGCCGGTTGAGCCGT+TGG | + | chr8_3:40903838-40903857 | Msa1288320:CDS | 65.0% |
| GCCAACGGCTCAACCGGCAT+CGG | - | chr8_3:40903842-40903861 | None:intergenic | 65.0% | |
| GGTTCAGGAGCAGGCTGAGC+CGG | - | chr8_3:40903872-40903891 | None:intergenic | 65.0% | |
| TGCTCCTGAACCGATGCCGC+CGG | + | chr8_3:40903880-40903899 | Msa1288320:CDS | 65.0% | |
| !! | ATCACCGGCGGCATCGGTTC+AGG | - | chr8_3:40903887-40903906 | None:intergenic | 65.0% |
| ! | CATTCACCGGCTGGGCCTTC+GGG | + | chr8_3:40903908-40903927 | Msa1288320:CDS | 65.0% |
| GAAGAACCCGAAGGCCCAGC+CGG | - | chr8_3:40903917-40903936 | None:intergenic | 65.0% | |
| CGAGCCGCTGTTGCAGCAGA+TGG | + | chr8_3:40903970-40903989 | Msa1288320:CDS | 65.0% | |
| AGCGGAGGCTGGACACTCTC+TGG | + | chr8_3:40905291-40905310 | Msa1288320:intron | 65.0% | |
| !! | GGCGGCATCGGTTCAGGAGC+AGG | - | chr8_3:40903881-40903900 | None:intergenic | 70.0% |
| !! | GGCGGCATCGGTTCAGGAGC+AGG | - | chr8_3:40903881-40903900 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 40903488 | 40906534 | 40903488 | ID=Msa1288320;Name=Msa1288320 |
| chr8_3 | mRNA | 40903488 | 40906534 | 40903488 | ID=Msa1288320-mRNA-1;Parent=Msa1288320;Name=Msa1288320-mRNA-1;_AED=0.14;_eAED=0.14;_QI=185|1|1|1|0.85|0.75|8|260|290 |
| chr8_3 | exon | 40903488 | 40903647 | 40903488 | ID=Msa1288320-mRNA-1:exon:11266;Parent=Msa1288320-mRNA-1 |
| chr8_3 | exon | 40903772 | 40904075 | 40903772 | ID=Msa1288320-mRNA-1:exon:11267;Parent=Msa1288320-mRNA-1 |
| chr8_3 | exon | 40904798 | 40904869 | 40904798 | ID=Msa1288320-mRNA-1:exon:11268;Parent=Msa1288320-mRNA-1 |
| chr8_3 | exon | 40905090 | 40905157 | 40905090 | ID=Msa1288320-mRNA-1:exon:11269;Parent=Msa1288320-mRNA-1 |
| chr8_3 | exon | 40905293 | 40905449 | 40905293 | ID=Msa1288320-mRNA-1:exon:11270;Parent=Msa1288320-mRNA-1 |
| chr8_3 | exon | 40905634 | 40905714 | 40905634 | ID=Msa1288320-mRNA-1:exon:11271;Parent=Msa1288320-mRNA-1 |
| chr8_3 | exon | 40905827 | 40905916 | 40905827 | ID=Msa1288320-mRNA-1:exon:11272;Parent=Msa1288320-mRNA-1 |
| chr8_3 | exon | 40906149 | 40906534 | 40906149 | ID=Msa1288320-mRNA-1:exon:11273;Parent=Msa1288320-mRNA-1 |
| chr8_3 | five_prime_UTR | 40903488 | 40903647 | 40903488 | ID=Msa1288320-mRNA-1:five_prime_utr;Parent=Msa1288320-mRNA-1 |
| chr8_3 | five_prime_UTR | 40903772 | 40903796 | 40903772 | ID=Msa1288320-mRNA-1:five_prime_utr;Parent=Msa1288320-mRNA-1 |
| chr8_3 | CDS | 40903797 | 40904075 | 40903797 | ID=Msa1288320-mRNA-1:cds;Parent=Msa1288320-mRNA-1 |
| chr8_3 | CDS | 40904798 | 40904869 | 40904798 | ID=Msa1288320-mRNA-1:cds;Parent=Msa1288320-mRNA-1 |
| chr8_3 | CDS | 40905090 | 40905157 | 40905090 | ID=Msa1288320-mRNA-1:cds;Parent=Msa1288320-mRNA-1 |
| chr8_3 | CDS | 40905293 | 40905449 | 40905293 | ID=Msa1288320-mRNA-1:cds;Parent=Msa1288320-mRNA-1 |
| chr8_3 | CDS | 40905634 | 40905714 | 40905634 | ID=Msa1288320-mRNA-1:cds;Parent=Msa1288320-mRNA-1 |
| chr8_3 | CDS | 40905827 | 40905916 | 40905827 | ID=Msa1288320-mRNA-1:cds;Parent=Msa1288320-mRNA-1 |
| chr8_3 | CDS | 40906149 | 40906274 | 40906149 | ID=Msa1288320-mRNA-1:cds;Parent=Msa1288320-mRNA-1 |
| chr8_3 | three_prime_UTR | 40906275 | 40906534 | 40906275 | ID=Msa1288320-mRNA-1:three_prime_utr;Parent=Msa1288320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
