AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0325470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0325470 MtrunA17_Chr2g0303671 93.204 309 21 0 1 309 1 309 0.0 596
Msa0325470 MtrunA17_Chr5g0405451 44.712 208 114 1 97 304 219 425 3.07e-55 185
Msa0325470 MtrunA17_Chr5g0406201 48.235 170 88 0 138 307 291 460 9.19e-53 180
Msa0325470 MtrunA17_Chr5g0418551 36.232 138 88 0 147 284 89 226 1.33e-21 91.7
Msa0325470 MtrunA17_Chr5g0418551 34.454 119 75 3 178 294 87 204 6.58e-15 73.2
Msa0325470 MtrunA17_Chr3g0127131 39.091 110 61 3 193 298 246 353 1.40e-14 73.6
Msa0325470 MtrunA17_Chr6g0461061 28.652 178 124 3 126 302 189 364 1.04e-12 68.6
Msa0325470 MtrunA17_Chr5g0409271 29.139 151 104 2 139 288 4 152 7.78e-12 64.7
Msa0325470 MtrunA17_Chr1g0211231 25.258 194 134 2 87 279 12 195 1.33e-11 65.1
Msa0325470 MtrunA17_Chr2g0328031 30.719 153 93 2 132 271 30 182 1.34e-11 64.7
Msa0325470 MtrunA17_Chr8g0361891 31.481 108 74 0 164 271 245 352 1.98e-11 63.9
Msa0325470 MtrunA17_Chr1g0180301 34.167 120 72 1 174 286 64 183 2.16e-11 62.4
Msa0325470 MtrunA17_Chr4g0064931 28.177 181 123 3 105 284 33 207 3.72e-11 63.9
Msa0325470 MtrunA17_Chr5g0409081 30.469 128 83 2 181 302 29 156 4.72e-11 60.8
Msa0325470 MtrunA17_Chr1g0196261 28.662 157 89 3 136 270 274 429 6.56e-11 62.8
Msa0325470 MtrunA17_Chr1g0211241 31.667 120 78 2 167 282 221 340 6.80e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0325470 AT5G40160.1 54.485 301 110 4 15 307 30 311 3.64e-106 312
Msa0325470 AT5G40160.2 52.265 287 106 5 15 293 30 293 1.14e-89 270
Msa0325470 AT5G66055.1 44.221 199 108 2 111 307 222 419 3.24e-51 175
Msa0325470 AT5G66055.2 42.446 139 77 2 111 247 222 359 4.86e-28 111
Msa0325470 AT2G03430.1 34.783 138 90 0 147 284 82 219 2.31e-18 82.8
Msa0325470 AT2G03430.1 28.814 177 119 4 130 301 29 203 5.35e-12 65.1
Msa0325470 AT2G25600.1 42.857 84 48 0 194 277 557 640 1.30e-13 72.0
Msa0325470 AT4G27780.1 37.113 97 58 1 193 286 242 338 4.30e-13 69.3
Msa0325470 AT5G53470.1 36.082 97 59 1 193 286 227 323 1.81e-12 67.4
Msa0325470 AT2G14255.1 32.624 141 92 2 150 287 93 233 3.05e-12 67.4
Msa0325470 AT5G13300.1 38.889 90 53 1 200 287 713 802 2.15e-11 65.1
Msa0325470 AT5G20350.1 28.649 185 123 4 102 284 25 202 2.60e-11 64.7
Msa0325470 AT3G09890.1 35.514 107 62 1 183 282 75 181 5.83e-11 61.6

Find 67 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAATCTGCACTATGTATT+TGG 0.150367 2_4:-32914097 None:intergenic
TTCTACCACTAAATCCAAAT+TGG 0.186869 2_4:+32911409 Msa0325470:CDS
GTGGAAACTGGCTCCCAATT+TGG 0.191687 2_4:-32911423 None:intergenic
GCAGAATATAACTCCTAATT+TGG 0.208160 2_4:+32912432 Msa0325470:CDS
TGCAGTATTTCTAGTTCTTC+TGG 0.234735 2_4:-32912409 None:intergenic
CCCAAGTTCCATGCTCTTGT+TGG 0.250770 2_4:-32911562 None:intergenic
TTGGATTTAGTGGTAGAAAA+AGG 0.255601 2_4:-32911404 None:intergenic
AAAGTTGTTTAATATTTAAA+TGG 0.256738 2_4:+32914242 Msa0325470:three_prime_UTR
TTTCAAAATGAAAGCTTTGA+TGG 0.283665 2_4:+32913997 Msa0325470:three_prime_UTR
ATATGTTATGTGCTTCTAAT+TGG 0.290524 2_4:+32913929 Msa0325470:three_prime_UTR
GCACTTCATAAGGCGGTTAT+AGG 0.299638 2_4:+32912739 Msa0325470:CDS
CAGGCAACTGAGTTCTATAA+TGG 0.334456 2_4:+32913866 Msa0325470:exon
TGATATTGATTTCGTCAATA+AGG 0.337108 2_4:+32912626 Msa0325470:CDS
GAAAACAGATATGGATTGTT+TGG 0.337802 2_4:+32911349 Msa0325470:exon
CCAAGTTCCATGCTCTTGTT+GGG 0.341128 2_4:-32911561 None:intergenic
GGCTCCCAATTTGGATTTAG+TGG 0.346517 2_4:-32911414 None:intergenic
TGTAGGAATGATATATCTAA+TGG 0.348095 2_4:+32914136 Msa0325470:three_prime_UTR
AGATAGATCGATAGAAAATA+AGG 0.384701 2_4:+32913184 Msa0325470:CDS
TCACTGTCACTACGAATATC+TGG 0.387326 2_4:-32911590 None:intergenic
CTTCTACATCAATGATTCCT+TGG 0.402593 2_4:+32914023 Msa0325470:three_prime_UTR
CCCAACAAGAGCATGGAACT+TGG 0.411307 2_4:+32911561 Msa0325470:CDS
CTTGCTAGATTAATTAAGAT+AGG 0.413079 2_4:+32913841 Msa0325470:CDS
TCTACCACTAAATCCAAATT+GGG 0.414187 2_4:+32911410 Msa0325470:CDS
TGTGTATATTCTGTGGAAAC+TGG 0.415893 2_4:-32911435 None:intergenic
AAGTCTTATTTCAGATATGT+AGG 0.425070 2_4:+32914119 Msa0325470:three_prime_UTR
TTTGAACGGCAACATGCAAT+GGG 0.445663 2_4:-32913118 None:intergenic
TGGAGCCCGCTGCACTCTCT+TGG 0.448549 2_4:+32912555 Msa0325470:CDS
ATAAATTTATTAGAAAGAAC+AGG 0.449639 2_4:-32911380 None:intergenic
CTGGATATAAGTATATGTTA+TGG 0.458251 2_4:+32913796 Msa0325470:CDS
CTTTATACTTCTTCAATCAT+CGG 0.458597 2_4:+32913954 Msa0325470:three_prime_UTR
CTTTGAACGGCAACATGCAA+TGG 0.462361 2_4:-32913119 None:intergenic
AGGTCTCACTGCACTTCATA+AGG 0.467266 2_4:+32912729 Msa0325470:CDS
TTGCACCTTTCCGTAAAAGA+TGG 0.475406 2_4:-32912783 None:intergenic
AATTTATCCACACCTTATCC+TGG 0.484529 2_4:-32912816 None:intergenic
TGCATGTTGCCGTTCAAAGC+CGG 0.486087 2_4:+32913123 Msa0325470:CDS
GTAGGAATGATATATCTAAT+GGG 0.487345 2_4:+32914137 Msa0325470:three_prime_UTR
ATATAACTAAAGATTCAATC+TGG 0.489614 2_4:-32913910 None:intergenic
GATGAAGAAGATAAAAGCCT+TGG 0.491869 2_4:+32911626 Msa0325470:CDS
TATCGATCTATCTGCGCCAT+TGG 0.492748 2_4:-32913174 None:intergenic
AGAGACGCAGGATGAGTATG+AGG 0.498691 2_4:+32911679 Msa0325470:CDS
CATTATAGAACTCAGTTGCC+TGG 0.505053 2_4:-32913865 None:intergenic
ATCTCTATTCCGGCTTTGAA+CGG 0.506075 2_4:-32913132 None:intergenic
TAATAATCTCTCAGGAAGGT+TGG 0.511156 2_4:+32913093 Msa0325470:intron
AGGCAACTGAGTTCTATAAT+GGG 0.513541 2_4:+32913867 Msa0325470:exon
AAGTCCTCATGTCCAGGATA+AGG 0.522498 2_4:+32912804 Msa0325470:CDS
AGTGACAGTGACGATGAGTA+TGG 0.526851 2_4:+32911602 Msa0325470:CDS
AGGTGCAAGTCCTCATGTCC+AGG 0.541101 2_4:+32912798 Msa0325470:CDS
AGATTAATTAAGATAGGTCC+AGG 0.543202 2_4:+32913847 Msa0325470:CDS
CTTCATTATGCAGTTCAAGT+TGG 0.553771 2_4:+32912926 Msa0325470:CDS
TATGAGGAGCGTATTAAGAA+AGG 0.561332 2_4:+32911695 Msa0325470:CDS
TTGCAAACCCAACAAGAGCA+TGG 0.561690 2_4:+32911554 Msa0325470:CDS
ATGGACAAGCTTCTTGAAAG+TGG 0.562294 2_4:+32912600 Msa0325470:CDS
ATAAGCCAAGAGAGTGCAGC+GGG 0.573360 2_4:-32912560 None:intergenic
CCAACAAGAGCATGGAACTT+GGG 0.578341 2_4:+32911562 Msa0325470:CDS
TCAGGACGGGAAAACAGCAC+TGG 0.590325 2_4:+32913777 Msa0325470:intron
CTATCTTAATTAATCTAGCA+AGG 0.596792 2_4:-32913840 None:intergenic
ACTGAGTTCTATAATGGGCG+AGG 0.602333 2_4:+32913872 Msa0325470:exon
TTGTACTTGTGTATATTCTG+TGG 0.604040 2_4:-32911442 None:intergenic
ACAGGAAGAGACAGAGACGC+AGG 0.613985 2_4:+32911667 Msa0325470:CDS
ACTTGAACTGCATAATGAAG+CGG 0.614286 2_4:-32912923 None:intergenic
GATAAGCCAAGAGAGTGCAG+CGG 0.632445 2_4:-32912561 None:intergenic
CACACCTTATCCTGGACATG+AGG 0.646294 2_4:-32912808 None:intergenic
GTTGCAATCAAATCAAGCAG+AGG 0.658547 2_4:+32911521 Msa0325470:CDS
TGAATTGTAACAAGTTGACG+TGG 0.662481 2_4:+32914179 Msa0325470:three_prime_UTR
TCTCACTGCACTTCATAAGG+CGG 0.692716 2_4:+32912732 Msa0325470:CDS
ATACAATGTTGATGTCAATG+TGG 0.742113 2_4:+32912979 Msa0325470:CDS
TTGAACGGCAACATGCAATG+GGG 0.746359 2_4:-32913117 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTATTTATTTATTTAT+TGG - chr2_4:32912287-32912306 None:intergenic 0.0%
!! AAATAAAATATATTGAATGA+TGG + chr2_4:32912297-32912316 Msa0325470:intron 10.0%
!! TGTTTATATATTTATTGATA+TGG + chr2_4:32912885-32912904 Msa0325470:intron 10.0%
!! AAAGTTGTTTAATATTTAAA+TGG + chr2_4:32914242-32914261 Msa0325470:three_prime_UTR 10.0%
!!! TTTATTTTTTTCTCTTTTTC+AGG + chr2_4:32911327-32911346 Msa0325470:five_prime_UTR 15.0%
!! ATAAATTTATTAGAAAGAAC+AGG - chr2_4:32911383-32911402 None:intergenic 15.0%
!!! TCAGTCTAAATTTTAATAAT+TGG + chr2_4:32911901-32911920 Msa0325470:intron 15.0%
!!! TAACAAAAGTATCAATTTAT+TGG - chr2_4:32912363-32912382 None:intergenic 15.0%
!!! TTTTGATTGTCTAATTAATT+CGG - chr2_4:32913353-32913372 None:intergenic 15.0%
!! ATAATAATCATACATGAGTA+TGG + chr2_4:32911834-32911853 Msa0325470:intron 20.0%
!! TAATAATCATACATGAGTAT+GGG + chr2_4:32911835-32911854 Msa0325470:intron 20.0%
!!! TTAATAATTGGTCTAAAGTT+TGG + chr2_4:32911913-32911932 Msa0325470:intron 20.0%
!!! TAATAATTGGTCTAAAGTTT+GGG + chr2_4:32911914-32911933 Msa0325470:intron 20.0%
!!! AAACCTTTTAATCTAAGTAT+AGG - chr2_4:32911991-32912010 None:intergenic 20.0%
!! TAAGAGAAAAAACAAAACAA+GGG - chr2_4:32912053-32912072 None:intergenic 20.0%
!! TTAAGAGAAAAAACAAAACA+AGG - chr2_4:32912054-32912073 None:intergenic 20.0%
!!! TAAAGCAATATTTTGAAAAC+TGG - chr2_4:32912182-32912201 None:intergenic 20.0%
!! TTGTACTTTATACTTTCAAA+TGG + chr2_4:32912224-32912243 Msa0325470:intron 20.0%
!!! GATGATATTTTTTCCAAATT+AGG - chr2_4:32912448-32912467 None:intergenic 20.0%
!!! ATCATTTCAGATTTTTAGTA+TGG + chr2_4:32912581-32912600 Msa0325470:CDS 20.0%
!! TATATATTTATTGATATGGC+AGG + chr2_4:32912889-32912908 Msa0325470:intron 20.0%
!! TTTACTATTAATAATCTCTC+AGG + chr2_4:32913085-32913104 Msa0325470:intron 20.0%
!! TCAATAATTAATATGCAACA+TGG + chr2_4:32913235-32913254 Msa0325470:intron 20.0%
!! TAGAAAAAAAAGATTAGATG+AGG + chr2_4:32913312-32913331 Msa0325470:intron 20.0%
!! AGAAAAAAAAGATTAGATGA+GGG + chr2_4:32913313-32913332 Msa0325470:intron 20.0%
!! GAATTAATAGTTCAGTTAAT+CGG + chr2_4:32913375-32913394 Msa0325470:intron 20.0%
!!! ACTTATACATACACTTTTAT+AGG + chr2_4:32913595-32913614 Msa0325470:intron 20.0%
!! ATATAACTAAAGATTCAATC+TGG - chr2_4:32913913-32913932 None:intergenic 20.0%
!!! GCTTTCATTTTGAAAAATAT+CGG - chr2_4:32913992-32914011 None:intergenic 20.0%
! AGCCTTGGATTTAAAAATAA+CGG + chr2_4:32911641-32911660 Msa0325470:CDS 25.0%
!!! TCATGTTACTTTTTCTCTAT+TGG + chr2_4:32911730-32911749 Msa0325470:intron 25.0%
! TATGTCATGATATTGAAAAC+TGG + chr2_4:32911759-32911778 Msa0325470:intron 25.0%
! ATGTCATGATATTGAAAACT+GGG + chr2_4:32911760-32911779 Msa0325470:intron 25.0%
! AGGTTTACAGTTTATCATAT+AGG + chr2_4:32912005-32912024 Msa0325470:intron 25.0%
! ATAAGATATGACGAAAAAGA+AGG + chr2_4:32912135-32912154 Msa0325470:intron 25.0%
!! TTTACACATTTCTCCTTTTA+TGG + chr2_4:32912198-32912217 Msa0325470:intron 25.0%
! TAAAGTACAAACACCATAAA+AGG - chr2_4:32912214-32912233 None:intergenic 25.0%
!!! AATGGTTTTAAGCTTTGATA+AGG + chr2_4:32912242-32912261 Msa0325470:intron 25.0%
! ATTGGAGATATTCAACAATT+AGG - chr2_4:32912269-32912288 None:intergenic 25.0%
! TTTCATGTATTCAGGAAAAA+TGG + chr2_4:32912535-32912554 Msa0325470:intron 25.0%
!!! TGATATTGATTTCGTCAATA+AGG + chr2_4:32912626-32912645 Msa0325470:CDS 25.0%
!! CAATTATCTTATTTACGACT+AGG - chr2_4:32912698-32912717 None:intergenic 25.0%
! CTAGTCGTAAATAAGATAAT+TGG + chr2_4:32912696-32912715 Msa0325470:intron 25.0%
! AGATAGATCGATAGAAAATA+AGG + chr2_4:32913184-32913203 Msa0325470:CDS 25.0%
! TTTCATATTAGTTGCAAACT+AGG - chr2_4:32913533-32913552 None:intergenic 25.0%
!! AATTTGAGTTTATAACTGAC+TGG - chr2_4:32913686-32913705 None:intergenic 25.0%
! AGTCAGTTATAAACTCAAAT+TGG + chr2_4:32913685-32913704 Msa0325470:intron 25.0%
! CTGGATATAAGTATATGTTA+TGG + chr2_4:32913796-32913815 Msa0325470:CDS 25.0%
! CTATCTTAATTAATCTAGCA+AGG - chr2_4:32913843-32913862 None:intergenic 25.0%
! CTTGCTAGATTAATTAAGAT+AGG + chr2_4:32913841-32913860 Msa0325470:CDS 25.0%
! ATATGTTATGTGCTTCTAAT+TGG + chr2_4:32913929-32913948 Msa0325470:three_prime_UTR 25.0%
! CTTTATACTTCTTCAATCAT+CGG + chr2_4:32913954-32913973 Msa0325470:three_prime_UTR 25.0%
!! TTTCAAAATGAAAGCTTTGA+TGG + chr2_4:32913997-32914016 Msa0325470:three_prime_UTR 25.0%
! TATAATCTGCACTATGTATT+TGG - chr2_4:32914100-32914119 None:intergenic 25.0%
!!! AAGTCTTATTTCAGATATGT+AGG + chr2_4:32914119-32914138 Msa0325470:three_prime_UTR 25.0%
! TGTAGGAATGATATATCTAA+TGG + chr2_4:32914136-32914155 Msa0325470:three_prime_UTR 25.0%
! GTAGGAATGATATATCTAAT+GGG + chr2_4:32914137-32914156 Msa0325470:three_prime_UTR 25.0%
!!! CTTTTTCAGGAAAACAGATA+TGG + chr2_4:32911340-32911359 Msa0325470:exon 30.0%
! GAAAACAGATATGGATTGTT+TGG + chr2_4:32911349-32911368 Msa0325470:exon 30.0%
TTGGATTTAGTGGTAGAAAA+AGG - chr2_4:32911407-32911426 None:intergenic 30.0%
TTCTACCACTAAATCCAAAT+TGG + chr2_4:32911409-32911428 Msa0325470:CDS 30.0%
TCTACCACTAAATCCAAATT+GGG + chr2_4:32911410-32911429 Msa0325470:CDS 30.0%
TTGTACTTGTGTATATTCTG+TGG - chr2_4:32911445-32911464 None:intergenic 30.0%
! AGAGAGACGTAATTTTTGTT+TGG - chr2_4:32911468-32911487 None:intergenic 30.0%
! AATTACGTCTCTCTTTTTCT+AGG + chr2_4:32911474-32911493 Msa0325470:CDS 30.0%
! ATTACGTCTCTCTTTTTCTA+GGG + chr2_4:32911475-32911494 Msa0325470:CDS 30.0%
GCCTTGGATTTAAAAATAAC+GGG + chr2_4:32911642-32911661 Msa0325470:CDS 30.0%
CCTTGGATTTAAAAATAACG+GGG + chr2_4:32911643-32911662 Msa0325470:CDS 30.0%
! ATTTAAAAATAACGGGGAAC+AGG + chr2_4:32911649-32911668 Msa0325470:CDS 30.0%
GGTCCTATACTTAGATTAAA+AGG + chr2_4:32911985-32912004 Msa0325470:intron 30.0%
AAGAAGGTTTACCAATTTCA+TGG + chr2_4:32912151-32912170 Msa0325470:intron 30.0%
!! GCAATATTTTGAAAACTGGA+TGG - chr2_4:32912178-32912197 None:intergenic 30.0%
! TGATACTTTTGTTAATGCAG+AGG + chr2_4:32912369-32912388 Msa0325470:intron 30.0%
GCAGAATATAACTCCTAATT+TGG + chr2_4:32912432-32912451 Msa0325470:CDS 30.0%
!!! GCTCTTATTTTCATGTATTC+AGG + chr2_4:32912527-32912546 Msa0325470:intron 30.0%
AATAAGATAATTGGATCGAC+AGG + chr2_4:32912705-32912724 Msa0325470:intron 30.0%
! CTGTTATAAGCCATCTTTTA+CGG + chr2_4:32912773-32912792 Msa0325470:CDS 30.0%
GTGAACAACATATGAACATA+AGG - chr2_4:32912842-32912861 None:intergenic 30.0%
TATTTATTGATATGGCAGGA+TGG + chr2_4:32912893-32912912 Msa0325470:intron 30.0%
ATACAATGTTGATGTCAATG+TGG + chr2_4:32912979-32912998 Msa0325470:CDS 30.0%
!!! TCAGTTTTACTTGCTGTATA+TGG + chr2_4:32913058-32913077 Msa0325470:intron 30.0%
!!! CAGTTTTACTTGCTGTATAT+GGG + chr2_4:32913059-32913078 Msa0325470:intron 30.0%
CTATTAATAATCTCTCAGGA+AGG + chr2_4:32913089-32913108 Msa0325470:intron 30.0%
! TTTTCGCTATATCTCTATTC+CGG - chr2_4:32913145-32913164 None:intergenic 30.0%
TTAATTATTGAGCTCTGTAG+TGG - chr2_4:32913226-32913245 None:intergenic 30.0%
TAATAGTTCAGTTAATCGGT+TGG + chr2_4:32913379-32913398 Msa0325470:intron 30.0%
TTGCAAACTAGGTATTATGT+GGG - chr2_4:32913522-32913541 None:intergenic 30.0%
! TTTATAACTGACTGGTTCAA+AGG - chr2_4:32913678-32913697 None:intergenic 30.0%
!!! GAGTTATTCTTTTTTGCTTG+TGG + chr2_4:32913729-32913748 Msa0325470:intron 30.0%
! TCATTGATTGGTTATGTTTC+AGG + chr2_4:32913759-32913778 Msa0325470:intron 30.0%
AGATTAATTAAGATAGGTCC+AGG + chr2_4:32913847-32913866 Msa0325470:CDS 30.0%
! ACTGCAAAAATGTTTTTCCA+AGG - chr2_4:32914043-32914062 None:intergenic 30.0%
TGTGTATATTCTGTGGAAAC+TGG - chr2_4:32911438-32911457 None:intergenic 35.0%
!! TTTTCTAGGGAGAATTGTGA+AGG + chr2_4:32911488-32911507 Msa0325470:CDS 35.0%
GATGAAGAAGATAAAAGCCT+TGG + chr2_4:32911626-32911645 Msa0325470:CDS 35.0%
!!! CCCCGTTATTTTTAAATCCA+AGG - chr2_4:32911646-32911665 None:intergenic 35.0%
! TATGAGGAGCGTATTAAGAA+AGG + chr2_4:32911695-32911714 Msa0325470:CDS 35.0%
ACCTAGAACTTGTATCAGAT+TGG + chr2_4:32911805-32911824 Msa0325470:intron 35.0%
TCCAATCTGATACAAGTTCT+AGG - chr2_4:32911809-32911828 None:intergenic 35.0%
! AAGCTACAAATGTGGCTTTT+TGG + chr2_4:32911943-32911962 Msa0325470:intron 35.0%
GAAAAAACAAAACAAGGGCT+GGG - chr2_4:32912048-32912067 None:intergenic 35.0%
AGAAAAAACAAAACAAGGGC+TGG - chr2_4:32912049-32912068 None:intergenic 35.0%
TAAGAAACGAGTGTCTAACA+AGG - chr2_4:32912104-32912123 None:intergenic 35.0%
!! TGCAGTATTTCTAGTTCTTC+TGG - chr2_4:32912412-32912431 None:intergenic 35.0%
! ATAAGCCATCTTTTACGGAA+AGG + chr2_4:32912778-32912797 Msa0325470:CDS 35.0%
AATTTATCCACACCTTATCC+TGG - chr2_4:32912819-32912838 None:intergenic 35.0%
ACTTGAACTGCATAATGAAG+CGG - chr2_4:32912926-32912945 None:intergenic 35.0%
CTTCATTATGCAGTTCAAGT+TGG + chr2_4:32912926-32912945 Msa0325470:CDS 35.0%
TAATAATCTCTCAGGAAGGT+TGG + chr2_4:32913093-32913112 Msa0325470:intron 35.0%
! GCGAAAATTTTGTTAGCCAA+TGG + chr2_4:32913158-32913177 Msa0325470:CDS 35.0%
TCTAATTAATTCGGCCCATT+GGG - chr2_4:32913344-32913363 None:intergenic 35.0%
! TCAGTACAGAACAGTTTTTC+AGG + chr2_4:32913413-32913432 Msa0325470:intron 35.0%
!!! TACAGAACAGTTTTTCAGGT+AGG + chr2_4:32913417-32913436 Msa0325470:intron 35.0%
TGCAAACTAGGTATTATGTG+GGG - chr2_4:32913521-32913540 None:intergenic 35.0%
GTTGCAAACTAGGTATTATG+TGG - chr2_4:32913523-32913542 None:intergenic 35.0%
TGTGGTAGAACTTCATTGAT+TGG + chr2_4:32913747-32913766 Msa0325470:intron 35.0%
! TGATTGGTTATGTTTCAGGA+CGG + chr2_4:32913763-32913782 Msa0325470:intron 35.0%
AGGCAACTGAGTTCTATAAT+GGG + chr2_4:32913867-32913886 Msa0325470:exon 35.0%
CTTCTACATCAATGATTCCT+TGG + chr2_4:32914023-32914042 Msa0325470:three_prime_UTR 35.0%
! TGAATTGTAACAAGTTGACG+TGG + chr2_4:32914179-32914198 Msa0325470:three_prime_UTR 35.0%
GTTGCAATCAAATCAAGCAG+AGG + chr2_4:32911521-32911540 Msa0325470:CDS 40.0%
TCACTGTCACTACGAATATC+TGG - chr2_4:32911593-32911612 None:intergenic 40.0%
CATGATATTGAAAACTGGGC+TGG + chr2_4:32911764-32911783 Msa0325470:intron 40.0%
GGATTGCAAAGCTACAAATG+TGG + chr2_4:32911935-32911954 Msa0325470:intron 40.0%
! GGCTAACTAAAAGCTTTAGC+AGG + chr2_4:32911964-32911983 Msa0325470:intron 40.0%
AACTGGATGGACCATGAAAT+TGG - chr2_4:32912165-32912184 None:intergenic 40.0%
CAAATGCAGATAAGAACGCA+AGG - chr2_4:32912506-32912525 None:intergenic 40.0%
ATGGACAAGCTTCTTGAAAG+TGG + chr2_4:32912600-32912619 Msa0325470:CDS 40.0%
AGATAATTGGATCGACAGGA+AGG + chr2_4:32912709-32912728 Msa0325470:intron 40.0%
TTGCACCTTTCCGTAAAAGA+TGG - chr2_4:32912786-32912805 None:intergenic 40.0%
TTTGAACGGCAACATGCAAT+GGG - chr2_4:32913121-32913140 None:intergenic 40.0%
!! ATCTCTATTCCGGCTTTGAA+CGG - chr2_4:32913135-32913154 None:intergenic 40.0%
AAAAAGATTAGATGAGGGCC+AGG + chr2_4:32913318-32913337 Msa0325470:intron 40.0%
GTCTAATTAATTCGGCCCAT+TGG - chr2_4:32913345-32913364 None:intergenic 40.0%
!!! GTTTTTCAGGTAGGTATCAG+TGG + chr2_4:32913426-32913445 Msa0325470:intron 40.0%
!! AAGCTGTTTTGAGCTCGTTT+CGG + chr2_4:32913491-32913510 Msa0325470:intron 40.0%
! TGGTTTGCATGCTAGTGAAT+AGG + chr2_4:32913705-32913724 Msa0325470:intron 40.0%
GGTTTGCATGCTAGTGAATA+GGG + chr2_4:32913706-32913725 Msa0325470:intron 40.0%
GTTTGCATGCTAGTGAATAG+GGG + chr2_4:32913707-32913726 Msa0325470:intron 40.0%
! GATTGGTTATGTTTCAGGAC+GGG + chr2_4:32913764-32913783 Msa0325470:intron 40.0%
CATTATAGAACTCAGTTGCC+TGG - chr2_4:32913868-32913887 None:intergenic 40.0%
CAGGCAACTGAGTTCTATAA+TGG + chr2_4:32913866-32913885 Msa0325470:exon 40.0%
GGCTCCCAATTTGGATTTAG+TGG - chr2_4:32911417-32911436 None:intergenic 45.0%
TTGCAAACCCAACAAGAGCA+TGG + chr2_4:32911554-32911573 Msa0325470:CDS 45.0%
CCAAGTTCCATGCTCTTGTT+GGG - chr2_4:32911564-32911583 None:intergenic 45.0%
! CCAACAAGAGCATGGAACTT+GGG + chr2_4:32911562-32911581 Msa0325470:CDS 45.0%
AGTGACAGTGACGATGAGTA+TGG + chr2_4:32911602-32911621 Msa0325470:CDS 45.0%
AGATAAGAACGCAAGGCTCT+AGG - chr2_4:32912499-32912518 None:intergenic 45.0%
AGGTCTCACTGCACTTCATA+AGG + chr2_4:32912729-32912748 Msa0325470:CDS 45.0%
TCTCACTGCACTTCATAAGG+CGG + chr2_4:32912732-32912751 Msa0325470:CDS 45.0%
GCACTTCATAAGGCGGTTAT+AGG + chr2_4:32912739-32912758 Msa0325470:CDS 45.0%
AAGTCCTCATGTCCAGGATA+AGG + chr2_4:32912804-32912823 Msa0325470:CDS 45.0%
TTGAACGGCAACATGCAATG+GGG - chr2_4:32913120-32913139 None:intergenic 45.0%
CTTTGAACGGCAACATGCAA+TGG - chr2_4:32913122-32913141 None:intergenic 45.0%
TATCGATCTATCTGCGCCAT+TGG - chr2_4:32913177-32913196 None:intergenic 45.0%
! GACTGGTTCAAAGGCATGTA+GGG - chr2_4:32913669-32913688 None:intergenic 45.0%
! TGACTGGTTCAAAGGCATGT+AGG - chr2_4:32913670-32913689 None:intergenic 45.0%
!! ACTGAGTTCTATAATGGGCG+AGG + chr2_4:32913872-32913891 Msa0325470:exon 45.0%
! GTGGAAACTGGCTCCCAATT+TGG - chr2_4:32911426-32911445 None:intergenic 50.0%
! CCCAACAAGAGCATGGAACT+TGG + chr2_4:32911561-32911580 Msa0325470:CDS 50.0%
CCCAAGTTCCATGCTCTTGT+TGG - chr2_4:32911565-32911584 None:intergenic 50.0%
AGAGACGCAGGATGAGTATG+AGG + chr2_4:32911679-32911698 Msa0325470:CDS 50.0%
! TGGGCTGGACATTTCTGTGT+TGG + chr2_4:32911779-32911798 Msa0325470:intron 50.0%
! ATAAGCCAAGAGAGTGCAGC+GGG - chr2_4:32912563-32912582 None:intergenic 50.0%
! GATAAGCCAAGAGAGTGCAG+CGG - chr2_4:32912564-32912583 None:intergenic 50.0%
CACACCTTATCCTGGACATG+AGG - chr2_4:32912811-32912830 None:intergenic 50.0%
CTCATGTCCAGGATAAGGTG+TGG + chr2_4:32912809-32912828 Msa0325470:intron 50.0%
TGCATGTTGCCGTTCAAAGC+CGG + chr2_4:32913123-32913142 Msa0325470:CDS 50.0%
ACAGGAAGAGACAGAGACGC+AGG + chr2_4:32911667-32911686 Msa0325470:CDS 55.0%
AGGTGCAAGTCCTCATGTCC+AGG + chr2_4:32912798-32912817 Msa0325470:CDS 55.0%
TTAATTCGGCCCATTGGGCC+TGG - chr2_4:32913339-32913358 None:intergenic 55.0%
TCAGGACGGGAAAACAGCAC+TGG + chr2_4:32913777-32913796 Msa0325470:intron 55.0%
TAGATGAGGGCCAGGCCCAA+TGG + chr2_4:32913326-32913345 Msa0325470:intron 60.0%
AGATGAGGGCCAGGCCCAAT+GGG + chr2_4:32913327-32913346 Msa0325470:intron 60.0%
TGGAGCCCGCTGCACTCTCT+TGG + chr2_4:32912555-32912574 Msa0325470:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 32911326 32914283 32911326 ID=Msa0325470;Name=Msa0325470
chr2_4 mRNA 32911326 32914283 32911326 ID=Msa0325470-mRNA-1;Parent=Msa0325470;Name=Msa0325470-mRNA-1;_AED=0.12;_eAED=0.12;_QI=33|1|1|1|1|1|7|407|309
chr2_4 exon 32911326 32911716 32911326 ID=Msa0325470-mRNA-1:exon:10683;Parent=Msa0325470-mRNA-1
chr2_4 exon 32912389 32912468 32912389 ID=Msa0325470-mRNA-1:exon:10684;Parent=Msa0325470-mRNA-1
chr2_4 exon 32912549 32912647 32912549 ID=Msa0325470-mRNA-1:exon:10685;Parent=Msa0325470-mRNA-1
chr2_4 exon 32912727 32912825 32912727 ID=Msa0325470-mRNA-1:exon:10686;Parent=Msa0325470-mRNA-1
chr2_4 exon 32912911 32913009 32912911 ID=Msa0325470-mRNA-1:exon:10687;Parent=Msa0325470-mRNA-1
chr2_4 exon 32913107 32913205 32913107 ID=Msa0325470-mRNA-1:exon:10688;Parent=Msa0325470-mRNA-1
chr2_4 exon 32913781 32914283 32913781 ID=Msa0325470-mRNA-1:exon:10689;Parent=Msa0325470-mRNA-1
chr2_4 five_prime_UTR 32911326 32911358 32911326 ID=Msa0325470-mRNA-1:five_prime_utr;Parent=Msa0325470-mRNA-1
chr2_4 CDS 32911359 32911716 32911359 ID=Msa0325470-mRNA-1:cds;Parent=Msa0325470-mRNA-1
chr2_4 CDS 32912389 32912468 32912389 ID=Msa0325470-mRNA-1:cds;Parent=Msa0325470-mRNA-1
chr2_4 CDS 32912549 32912647 32912549 ID=Msa0325470-mRNA-1:cds;Parent=Msa0325470-mRNA-1
chr2_4 CDS 32912727 32912825 32912727 ID=Msa0325470-mRNA-1:cds;Parent=Msa0325470-mRNA-1
chr2_4 CDS 32912911 32913009 32912911 ID=Msa0325470-mRNA-1:cds;Parent=Msa0325470-mRNA-1
chr2_4 CDS 32913107 32913205 32913107 ID=Msa0325470-mRNA-1:cds;Parent=Msa0325470-mRNA-1
chr2_4 CDS 32913781 32913876 32913781 ID=Msa0325470-mRNA-1:cds;Parent=Msa0325470-mRNA-1
chr2_4 three_prime_UTR 32913877 32914283 32913877 ID=Msa0325470-mRNA-1:three_prime_utr;Parent=Msa0325470-mRNA-1
Gene Sequence

>Msa0325470

ATGGATTGTTTGGCTACATCACCTGTTCTTTCTAATAAATTTATTCCTTTTTCTACCACTAAATCCAAATTGGGAGCCAGTTTCCACAGAATATACACAAGTACAACCAAACAAAAATTACGTCTCTCTTTTTCTAGGGAGAATTGTGAAGGTCAGAGTAATGTTGCAATCAAATCAAGCAGAGGAGTATCTTCTTTGCAAACCCAACAAGAGCATGGAACTTGGGAAGAACCAGATATTCGTAGTGACAGTGACGATGAGTATGGTGATGAAGAAGATAAAAGCCTTGGATTTAAAAATAACGGGGAACAGGAAGAGACAGAGACGCAGGATGAGTATGAGGAGCGTATTAAGAAAGAGGTTGAACGACTTTTAAAACCAGAAGAACTAGAAATACTGCAGCAGAATATAACTCCTAATTTGGAAAAAATATCATCTGAAAAATGGAGCCCGCTGCACTCTCTTGGCTTATCATTTCAGATTTTTAGTATGGACAAGCTTCTTGAAAGTGGTCATGATATTGATTTCGTCAATAAGGAAGGTCTCACTGCACTTCATAAGGCGGTTATAGGTAAAAAAGAAGCTGTTATAAGCCATCTTTTACGGAAAGGTGCAAGTCCTCATGTCCAGGATAAGGATGGAGCTACTCCGCTTCATTATGCAGTTCAAGTTGGTGCAAAGCAAACTGTGAAATTATTGATCAAATACAATGTTGATGTCAATGTGGCAGATAATGAAGGTTGGACCCCATTGCATGTTGCCGTTCAAAGCCGGAATAGAGATATAGCGAAAATTTTGTTAGCCAATGGCGCAGATAGATCGATAGAAAATAAGGACGGGAAAACAGCACTGGATATAAGTATATGTTATGGAAAAGACTTCATGTCTTATGACCTTGCTAGATTAATTAAGATAGGTCCAGGCAACTGA

Protein sequence

>Msa0325470

MDCLATSPVLSNKFIPFSTTKSKLGASFHRIYTSTTKQKLRLSFSRENCEGQSNVAIKSSRGVSSLQTQQEHGTWEEPDIRSDSDDEYGDEEDKSLGFKNNGEQEETETQDEYEERIKKEVERLLKPEELEILQQNITPNLEKISSEKWSPLHSLGLSFQIFSMDKLLESGHDIDFVNKEGLTALHKAVIGKKEAVISHLLRKGASPHVQDKDGATPLHYAVQVGAKQTVKLLIKYNVDVNVADNEGWTPLHVAVQSRNRDIAKILLANGADRSIENKDGKTALDISICYGKDFMSYDLARLIKIGPGN*