AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0230770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0230770 MtrunA17_Chr2g0277061 93.034 646 9 4 1 646 1 610 0.0 1214
Msa0230770 MtrunA17_Chr8g0385121 62.063 630 196 7 12 638 9 598 0.0 761
Msa0230770 MtrunA17_Chr4g0046841 50.314 636 258 10 12 631 21 614 0.0 604
Msa0230770 MtrunA17_Chr8g0385131 48.657 633 259 7 1 632 1 568 0.0 556
Msa0230770 MtrunA17_Chr8g0377631 43.740 647 293 14 14 628 9 616 1.53e-176 515
Msa0230770 MtrunA17_Chr8g0391931 45.182 633 280 12 13 628 6 588 6.00e-172 503
Msa0230770 MtrunA17_Chr8g0385181 44.708 633 267 11 1 630 1 553 2.97e-168 492
Msa0230770 MtrunA17_Chr3g0122211 41.991 643 301 13 16 628 17 617 1.95e-167 492
Msa0230770 MtrunA17_Chr4g0013011 40.881 636 302 12 8 628 6 582 3.62e-148 441
Msa0230770 MtrunA17_Chr2g0284691 41.653 629 267 12 16 629 22 565 2.11e-146 436
Msa0230770 MtrunA17_Chr8g0385161 45.033 302 110 5 331 632 1 246 1.42e-72 234
Msa0230770 MtrunA17_Chr8g0385171 44.025 318 140 9 11 327 11 291 1.07e-71 234
Msa0230770 MtrunA17_Chr7g0274871 49.007 151 63 4 12 161 126 263 5.08e-34 131
Msa0230770 MtrunA17_Chr8g0385141 54.464 112 49 2 125 234 11 122 1.49e-29 115
Msa0230770 MtrunA17_Chr8g0385151 60.417 48 19 0 281 328 1 48 4.25e-16 72.4
Msa0230770 MtrunA17_Chr7g0274911 46.575 73 31 2 540 609 13 80 4.22e-12 64.3
Msa0230770 MtrunA17_Chr7g0274901 33.913 115 45 2 372 485 1 85 3.21e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0230770 AT4G24290.2 70.494 627 150 3 9 635 7 598 0.0 915
Msa0230770 AT4G24290.3 70.494 627 150 3 9 635 7 598 0.0 915
Msa0230770 AT1G28380.1 50.625 640 261 14 9 634 11 609 0.0 585
Msa0230770 AT4G24290.1 68.563 334 99 2 9 340 7 336 2.64e-164 474
Msa0230770 AT1G14780.1 41.911 649 303 17 14 628 10 618 6.81e-158 468
Msa0230770 AT1G29690.1 40.916 633 257 13 16 628 24 559 7.64e-147 437

Find 197 sgRNAs with CRISPR-Local

Find 464 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATCACATTTGATTAATT+TGG 0.118516 2_2:-2992682 None:intergenic
GATAAGTTGTAAGTTATTTA+AGG 0.192279 2_2:+2998148 Msa0230770:three_prime_UTR
CCAATTACCTCTCTATTAAA+TGG 0.214110 2_2:+2995776 Msa0230770:CDS
AATGGCAGATAAAAGGTTTC+TGG 0.239366 2_2:+2994156 Msa0230770:CDS
TGAAAGAAATGGCAGATAAA+AGG 0.248109 2_2:+2994149 Msa0230770:CDS
TGAAGAGCTCCACCAATTCT+TGG 0.267556 2_2:+2996697 Msa0230770:CDS
TGAGAGTTATTTACTTAGTA+TGG 0.275367 2_2:+2992449 Msa0230770:exon
TATTATTCTCATTATTGATT+TGG 0.277978 2_2:+2998365 Msa0230770:three_prime_UTR
CAATTGCAAGTTGAGAATTA+TGG 0.283102 2_2:+2997470 Msa0230770:CDS
TGGGATGGGTCTCCCGGGCT+AGG 0.283433 2_2:+2997566 Msa0230770:CDS
GACGATCCGCAAACAGTAAT+TGG 0.290437 2_2:+2992172 Msa0230770:five_prime_UTR
ATCTTTACAGTTTAGCTTCA+TGG 0.292509 2_2:+2996799 Msa0230770:CDS
TTTGCTCACATCGTAAATAA+AGG 0.296564 2_2:-2995835 None:intergenic
ACGATATATCTTCTGATATA+AGG 0.297869 2_2:+2992538 Msa0230770:CDS
CCATTTAATAGAGAGGTAAT+TGG 0.300333 2_2:-2995776 None:intergenic
TATAAATTCAGCGGTCTATC+CGG 0.305913 2_2:+2997676 Msa0230770:CDS
GTATTCGTCATCAAGATAAT+TGG 0.311458 2_2:+2998012 Msa0230770:three_prime_UTR
CCCGAGTGGGATGGGTCTCC+CGG 0.314842 2_2:+2997560 Msa0230770:CDS
GATCAGAAGCTGAGCTATAT+TGG 0.322944 2_2:-2994189 None:intergenic
TGTCACTGGAGCAAGACTTT+TGG 0.330179 2_2:+2997796 Msa0230770:CDS
TTGATTAATTTGGAAACATT+TGG 0.342511 2_2:-2992672 None:intergenic
TCTCTATTAAATGGAGTTCC+AGG 0.346369 2_2:+2995785 Msa0230770:CDS
CGCAGGAGACTCCTGGCTAT+TGG 0.347040 2_2:+2997771 Msa0230770:CDS
TTTCCTCACAGTTTGGAATC+AGG 0.347420 2_2:+2995477 Msa0230770:intron
AAAGGCCACCCTACCTGATT+AGG 0.347743 2_2:-2998045 None:intergenic
CCGGTAAATCTTTATTCATC+TGG 0.349002 2_2:+2996848 Msa0230770:CDS
GTGCCCACTGCCTGGGAAGC+TGG 0.351878 2_2:-2996724 None:intergenic
CCAGATGAATAAAGATTTAC+CGG 0.365909 2_2:-2996848 None:intergenic
AAATTAATCAAATGTGATAA+AGG 0.365999 2_2:+2992684 Msa0230770:CDS
CTTAAATTCTCAACTGTGTT+GGG 0.368805 2_2:+2997518 Msa0230770:CDS
TTATGTGAATAAGAACTTGA+TGG 0.371590 2_2:-2995530 None:intergenic
CCCGGGCTAGGGGCCAAGTC+TGG 0.385188 2_2:+2997578 Msa0230770:CDS
AAGGTGAACGCACCAGGTTC+AGG 0.386131 2_2:+2992703 Msa0230770:CDS
GGATGGGTCTCCCGGGCTAG+GGG 0.386935 2_2:+2997568 Msa0230770:CDS
AGGGAGAGGTTGGGAAAGAA+AGG 0.387741 2_2:+2997986 Msa0230770:three_prime_UTR
TCCAGACTTGGCCCCTAGCC+CGG 0.390185 2_2:-2997579 None:intergenic
GGGATGGGTCTCCCGGGCTA+GGG 0.391858 2_2:+2997567 Msa0230770:CDS
TCTTTACAGTTTAGCTTCAT+GGG 0.397162 2_2:+2996800 Msa0230770:CDS
TAAATCATGCTCGTGTCCTT+TGG 0.399546 2_2:+2996919 Msa0230770:CDS
ATCAAGTTCTTATTCACATA+AGG 0.404312 2_2:+2995532 Msa0230770:CDS
GAATTTATATTAACATCTGC+TGG 0.404538 2_2:-2997662 None:intergenic
TTTGTTGACTATGATGTTAC+CGG 0.406435 2_2:+2997856 Msa0230770:CDS
GCAGGAGACTCCTGGCTATT+GGG 0.407109 2_2:+2997772 Msa0230770:CDS
CCCAGGTTTATCGATACCTT+TGG 0.408636 2_2:+2994025 Msa0230770:intron
GTGGTTGCAGACCGTTCAAT+TGG 0.415947 2_2:+2995724 Msa0230770:CDS
TTGGGAGCTTGTACGGGAAC+AGG 0.426439 2_2:-2997707 None:intergenic
TAGAAGCTTGGGAGCTTGTA+CGG 0.428330 2_2:-2997714 None:intergenic
TTTGGCACCCATGTTATTGT+TGG 0.433049 2_2:+2994043 Msa0230770:CDS
GATTTAAGTCCATGGGTCTC+TGG 0.433190 2_2:+2998243 Msa0230770:three_prime_UTR
TAAGTTATTTAAGGAGTGTA+GGG 0.433516 2_2:+2998157 Msa0230770:three_prime_UTR
AAAGCTGCTGAGATTGCAAT+TGG 0.433991 2_2:+2992498 Msa0230770:CDS
CCTGGCTATTGGGTTGTCAC+TGG 0.435676 2_2:+2997782 Msa0230770:CDS
TGGAAATTATAGACGAACTT+TGG 0.435962 2_2:+2998385 Msa0230770:three_prime_UTR
GAATACAGGTGCCCACTGCC+TGG 0.436080 2_2:-2996732 None:intergenic
AGCTGACTTTGTTCTTCGTT+AGG 0.437061 2_2:+2997918 Msa0230770:exon
CTTATTAGCCAACACTTCAC+AGG 0.441277 2_2:+2997614 Msa0230770:CDS
TGGTGGAGCTCTTCAATTGG+TGG 0.442263 2_2:-2996689 None:intergenic
ATCTTCCTCTTGGTCCTCAA+TGG 0.443218 2_2:+2996759 Msa0230770:CDS
GTAAGTTATTTAAGGAGTGT+AGG 0.444719 2_2:+2998156 Msa0230770:three_prime_UTR
TCATTCTCGCTTGATTGAGA+TGG 0.449401 2_2:+2992599 Msa0230770:CDS
GTTATCTCTCTTGAGTTCAC+AGG 0.451893 2_2:+2992063 Msa0230770:five_prime_UTR
GTATTCAGTGATCTTCCTCT+TGG 0.451919 2_2:+2996749 Msa0230770:CDS
CCAGACTTGGCCCCTAGCCC+GGG 0.452765 2_2:-2997578 None:intergenic
TTGACTGGCAAAATTCCCTC+AGG 0.453374 2_2:+2992894 Msa0230770:CDS
AATCAGGAGTTGTCTTTGAC+TGG 0.453791 2_2:+2992879 Msa0230770:CDS
CTCAACTGTGTTGGGAGCTA+AGG 0.454561 2_2:+2997526 Msa0230770:CDS
CTCATAGAATCTCTTATCAT+AGG 0.457958 2_2:-2997366 None:intergenic
ATGTTATAACAGGTTGATGT+AGG 0.461015 2_2:+2997203 Msa0230770:intron
GGTCTCCGTCTCTATCTAGA+AGG 0.461252 2_2:+2997242 Msa0230770:CDS
CCCATCAAAAGCAAGGGTCT+TGG 0.462275 2_2:-2992973 None:intergenic
AATTGGTGGAGCTCTTCAAT+TGG 0.463212 2_2:-2996692 None:intergenic
GAGAGGTTGGGAAAGAAAGG+AGG 0.467042 2_2:+2997989 Msa0230770:three_prime_UTR
CTCAACTTGCAATTGTGCTC+CGG 0.467644 2_2:-2997462 None:intergenic
GATGACCGAGCAGTTCAATC+AGG 0.469858 2_2:+2992863 Msa0230770:intron
ACTTAAATTCTCAACTGTGT+TGG 0.471471 2_2:+2997517 Msa0230770:CDS
GAGGAGCTTTCAATAGTAAC+CGG 0.473360 2_2:+2997443 Msa0230770:CDS
TTGAAGAGATTGATGTGAAG+GGG 0.474306 2_2:+2998125 Msa0230770:three_prime_UTR
CTTTATTCATCTGGACGTCT+AGG 0.476189 2_2:+2996857 Msa0230770:CDS
ATAAATTCAGCGGTCTATCC+GGG 0.477465 2_2:+2997677 Msa0230770:CDS
GTGCAGCCAATTACTGTTTG+CGG 0.477899 2_2:-2992178 None:intergenic
TCATGTGTGCACTGCTCCTG+TGG 0.477974 2_2:+2997412 Msa0230770:CDS
TCTTGGAATTCCAGCTTCCC+AGG 0.479841 2_2:+2996714 Msa0230770:CDS
AGCAACTTTCATATTTAACT+TGG 0.479983 2_2:+2998465 Msa0230770:three_prime_UTR
GAACTTTGGTGATCAAGAAA+TGG 0.480674 2_2:+2998399 Msa0230770:three_prime_UTR
CCCGGGAGACCCATCCCACT+CGG 0.481170 2_2:-2997561 None:intergenic
GAAGCTGGAATTCCAAGAAT+TGG 0.481340 2_2:-2996709 None:intergenic
CTAGGTATTCAGTGGCAGAC+TGG 0.482502 2_2:+2996875 Msa0230770:CDS
AGAAAGCTGTTCCATCATCA+TGG 0.488153 2_2:+2993060 Msa0230770:CDS
TAGAGAGGTAATTGGAATGA+AGG 0.488757 2_2:-2995768 None:intergenic
AATTCCAGCTTCCCAGGCAG+TGG 0.490270 2_2:+2996720 Msa0230770:CDS
GGGATGAAAGGTGTTGCATA+TGG 0.493225 2_2:-2997289 None:intergenic
AGAAGCTTGGGAGCTTGTAC+GGG 0.496532 2_2:-2997713 None:intergenic
CACTGCTCCTGTGGAATCTG+AGG 0.499061 2_2:+2997421 Msa0230770:CDS
TTAAATGGAGTTCCAGGGAG+TGG 0.502695 2_2:+2995791 Msa0230770:CDS
AACAGGTTGATGTAGGTAAG+AGG 0.504904 2_2:+2997210 Msa0230770:intron
AAGGACATTGAGATCACATC+AGG 0.507817 2_2:-2995749 None:intergenic
GTGATAAAGGTGAACGCACC+AGG 0.509935 2_2:+2992697 Msa0230770:CDS
CATTTGGATCATCTTCAAGC+TGG 0.510901 2_2:-2997325 None:intergenic
TAAAACATCCCGAGTGGGAT+GGG 0.512771 2_2:+2997552 Msa0230770:CDS
GATTCTATGAGAAGGTTCAA+TGG 0.513867 2_2:+2997378 Msa0230770:CDS
CTGCTGATGAAGGCAAAGAA+AGG 0.519422 2_2:-2997941 None:intergenic
TGTTATTGTTGGTATGAAGA+TGG 0.520317 2_2:+2994054 Msa0230770:CDS
GACTAGCTGATTTAAGTCCA+TGG 0.523888 2_2:+2998235 Msa0230770:three_prime_UTR
TGAAGAGATTGATGTGAAGG+GGG 0.525146 2_2:+2998126 Msa0230770:three_prime_UTR
AGTTTAGCTTCATGGGGCCA+AGG 0.525974 2_2:+2996807 Msa0230770:CDS
ATGGTGTTCACGTAGAGCCT+TGG 0.526771 2_2:-2996824 None:intergenic
AACAATAACATGGGTGCCAA+AGG 0.530256 2_2:-2994041 None:intergenic
TTTGAAGAGATTGATGTGAA+GGG 0.530866 2_2:+2998124 Msa0230770:three_prime_UTR
GTAGGTAAGAGGCCAGTGAC+TGG 0.531568 2_2:+2997221 Msa0230770:CDS
AGAGGTTGGGAAAGAAAGGA+GGG 0.531631 2_2:+2997990 Msa0230770:three_prime_UTR
ACTACATTAGAGATCTATGT+TGG 0.536387 2_2:+2998425 Msa0230770:three_prime_UTR
AGAGGACCGCAGGAGACTCC+TGG 0.540384 2_2:+2997764 Msa0230770:CDS
TCAACTCACCTTGCTAATGC+AGG 0.543651 2_2:-2993089 None:intergenic
GCAATTGGATCCATTGGTCG+TGG 0.547894 2_2:+2992513 Msa0230770:CDS
CCGAGTGGGATGGGTCTCCC+GGG 0.548033 2_2:+2997561 Msa0230770:CDS
AATACAGGTGCCCACTGCCT+GGG 0.548056 2_2:-2996731 None:intergenic
TGAATAAAGATTTACCGGTA+TGG 0.549065 2_2:-2996843 None:intergenic
ACATCTGCTGGACGAGGAGG+CGG 0.549259 2_2:-2997650 None:intergenic
AGCTCCTCCTCAGATTCCAC+AGG 0.551132 2_2:-2997428 None:intergenic
ATATTAACATCTGCTGGACG+AGG 0.551402 2_2:-2997656 None:intergenic
AGCTGAGCTATATTGGCCAT+TGG 0.551551 2_2:-2994182 None:intergenic
GAGCTCCGTTGCTTCCATTG+AGG 0.553578 2_2:-2996773 None:intergenic
GAGATTGCAATTGGATCCAT+TGG 0.554473 2_2:+2992507 Msa0230770:CDS
ACGGGAACAGGAGGGCCGCC+CGG 0.555975 2_2:-2997695 None:intergenic
GCAGGTGGGTCCCATGATGA+TGG 0.556483 2_2:-2993071 None:intergenic
ACACTTAGTTCTGCTGATGA+AGG 0.557606 2_2:-2997951 None:intergenic
TCTTACCTTCTAGATAGAGA+CGG 0.557827 2_2:-2997247 None:intergenic
CCAGTGACAACCCAATAGCC+AGG 0.559250 2_2:-2997782 None:intergenic
AACTGTGTTGGGAGCTAAGG+AGG 0.560977 2_2:+2997529 Msa0230770:CDS
GTAAATAAAGGTTTATAGCA+TGG 0.562633 2_2:-2995823 None:intergenic
TGGCTCAAGAATCCACTCCC+TGG 0.564442 2_2:-2995803 None:intergenic
AGAGGAAGATCACTGAATAC+AGG 0.565542 2_2:-2996746 None:intergenic
ACTAGCTGATTTAAGTCCAT+GGG 0.565602 2_2:+2998236 Msa0230770:three_prime_UTR
GCTGGAATTCCAAGAATTGG+TGG 0.566479 2_2:-2996706 None:intergenic
GGAGCTTGTACGGGAACAGG+AGG 0.569208 2_2:-2997704 None:intergenic
CAAAACATCAGACCTGAACC+TGG 0.572306 2_2:-2992715 None:intergenic
GTTATTGTTGGTATGAAGAT+GGG 0.573121 2_2:+2994055 Msa0230770:CDS
TTATTAGCCAACACTTCACA+GGG 0.577018 2_2:+2997615 Msa0230770:CDS
TAGAAGGTAAGAAAAGCAAT+CGG 0.578082 2_2:+2997258 Msa0230770:CDS
ATTGAATTGAAAAGCCCTGA+GGG 0.579139 2_2:-2992909 None:intergenic
ATTCCAGCTTCCCAGGCAGT+GGG 0.581178 2_2:+2996721 Msa0230770:CDS
TTAACACCCCATCAAAAGCA+AGG 0.584296 2_2:-2992980 None:intergenic
AAAATTTATCGCATAATCAG+TGG 0.585243 2_2:+2995705 Msa0230770:CDS
TGAGATGACTAGAGGACCGC+AGG 0.585822 2_2:+2997754 Msa0230770:CDS
TGACTGGCAAAATTCCCTCA+GGG 0.586502 2_2:+2992895 Msa0230770:CDS
TCTTCATACCAACAATAACA+TGG 0.586936 2_2:-2994051 None:intergenic
TGAAGATAATGATGTAAGAG+AGG 0.587582 2_2:+2992623 Msa0230770:CDS
CCGGGAGACCCATCCCACTC+GGG 0.589214 2_2:-2997560 None:intergenic
ACTCACCTTGCTAATGCAGG+TGG 0.589366 2_2:-2993086 None:intergenic
GAAAGCTGTTCCATCATCAT+GGG 0.590835 2_2:+2993061 Msa0230770:CDS
TTGGTCCTCAATGGAAGCAA+CGG 0.591455 2_2:+2996768 Msa0230770:CDS
CACATCAGGCTCCAATTGAA+CGG 0.591595 2_2:-2995735 None:intergenic
TGCTCCTGTGGAATCTGAGG+AGG 0.592386 2_2:+2997424 Msa0230770:CDS
GTAAAACATCCCGAGTGGGA+TGG 0.595842 2_2:+2997551 Msa0230770:CDS
TATATCGTATCCACGACCAA+TGG 0.596383 2_2:-2992523 None:intergenic
GAAAAGCCCCTGTGAAGTGT+TGG 0.596845 2_2:-2997622 None:intergenic
CTCTATTAAATGGAGTTCCA+GGG 0.597190 2_2:+2995786 Msa0230770:CDS
AAGTTCTTATTCACATAAGG+AGG 0.597395 2_2:+2995535 Msa0230770:CDS
TAGAGACGGAGACCAGTCAC+TGG 0.600119 2_2:-2997233 None:intergenic
CTTCTAGTCGAATATACTCT+CGG 0.601417 2_2:+2998501 Msa0230770:three_prime_UTR
CTTTACAGTTTAGCTTCATG+GGG 0.605349 2_2:+2996801 Msa0230770:CDS
CAACTCCTGATTGAACTGCT+CGG 0.606307 2_2:-2992868 None:intergenic
TGGAACTCCATTTAATAGAG+AGG 0.607859 2_2:-2995783 None:intergenic
AGTGGATATAAGTCCAGACT+TGG 0.608342 2_2:-2997591 None:intergenic
GATCATTCGCCAGAGACCCA+TGG 0.613353 2_2:-2998252 None:intergenic
AAGTTATTTAAGGAGTGTAG+GGG 0.614978 2_2:+2998158 Msa0230770:three_prime_UTR
AGGTAAGAAAAGCAATCGGT+TGG 0.619371 2_2:+2997262 Msa0230770:CDS
ACTTATCTAATCAAAACAAG+AGG 0.619915 2_2:-2998277 None:intergenic
TGAAAGGTGTTGCATATGGA+TGG 0.621383 2_2:-2997285 None:intergenic
GGGACCCACCTGCATTAGCA+AGG 0.622805 2_2:+2993081 Msa0230770:CDS
TGATAAGAGATTCTATGAGA+AGG 0.622926 2_2:+2997370 Msa0230770:CDS
GCTCTACGTGAACACCATAC+CGG 0.625303 2_2:+2996829 Msa0230770:CDS
AAAAGGTTTCTGGATGCCAA+TGG 0.632135 2_2:+2994166 Msa0230770:CDS
ATAAAAGTCTACATTAATAG+CGG 0.634495 2_2:-2998199 None:intergenic
CTTCATACCAACAATAACAT+GGG 0.635911 2_2:-2994050 None:intergenic
TGCTTCCATTGAGGACCAAG+AGG 0.639157 2_2:-2996764 None:intergenic
CTCACCTTGCTAATGCAGGT+GGG 0.643574 2_2:-2993085 None:intergenic
TAACACCCCATCAAAAGCAA+GGG 0.645381 2_2:-2992979 None:intergenic
TTAACATCTGCTGGACGAGG+AGG 0.648626 2_2:-2997653 None:intergenic
GGAGGTAAAACATCCCGAGT+GGG 0.648984 2_2:+2997547 Msa0230770:CDS
TTTGGTAATGAAACTCCACC+AGG 0.650986 2_2:-2992654 None:intergenic
GAGCTTGTACGGGAACAGGA+GGG 0.653809 2_2:-2997703 None:intergenic
AGATAATGATGTAAGAGAGG+TGG 0.657371 2_2:+2992626 Msa0230770:CDS
TGATTTATTATGATTAGACG+AGG 0.659442 2_2:-2996903 None:intergenic
TCATGAAGAGATACATACAA+TGG 0.662017 2_2:+2998093 Msa0230770:three_prime_UTR
GACACAACTGAGATGACTAG+AGG 0.662771 2_2:+2997746 Msa0230770:CDS
GAAGTGTTGGCTAATAAGAG+TGG 0.672984 2_2:-2997609 None:intergenic
CTGGACGTCTAGGTATTCAG+TGG 0.675217 2_2:+2996867 Msa0230770:CDS
AGATGTTAATATAAATTCAG+CGG 0.677176 2_2:+2997667 Msa0230770:CDS
ATTGTTGGTATGAAGATGGG+AGG 0.685663 2_2:+2994058 Msa0230770:CDS
AGGAGGTAAAACATCCCGAG+TGG 0.699249 2_2:+2997546 Msa0230770:CDS
CAATAGCCAGGAGTCTCCTG+CGG 0.701835 2_2:-2997770 None:intergenic
TAATAGCGGAATTACAACAG+TGG 0.707534 2_2:-2998185 None:intergenic
CATTGAATTGAAAAGCCCTG+AGG 0.721249 2_2:-2992910 None:intergenic
TGATGATTATGATGACACGT+TGG 0.726229 2_2:+2997886 Msa0230770:CDS
TATTAGCCAACACTTCACAG+GGG 0.757600 2_2:+2997616 Msa0230770:CDS
AATTCAGCGGTCTATCCGGG+CGG 0.783551 2_2:+2997680 Msa0230770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATTTATAAATTAA+TGG + chr2_2:2993355-2993374 Msa0230770:intron 0.0%
!!! AAAAATTAGATTTTTAAGTT+TGG - chr2_2:2992126-2992145 None:intergenic 10.0%
!!! AAACTTAAAAATCTAATTTT+TGG + chr2_2:2992125-2992144 Msa0230770:five_prime_UTR 10.0%
!!! TTTTATTTATAAATTAATGG+TGG + chr2_2:2993358-2993377 Msa0230770:intron 10.0%
!! AAATAGGATTAAAAATAAAT+GGG - chr2_2:2993934-2993953 None:intergenic 10.0%
!!! TAAAATAGTTTTCATTAATA+TGG - chr2_2:2995192-2995211 None:intergenic 10.0%
!! TATAAATATATAAATATTCC+GGG - chr2_2:2995578-2995597 None:intergenic 10.0%
!!! TTATTAATAATTTTTATTCC+CGG - chr2_2:2995971-2995990 None:intergenic 10.0%
!!! AAAAATCTAATTTTTGGTTT+AGG + chr2_2:2992131-2992150 Msa0230770:five_prime_UTR 15.0%
!!! AAAATCTAATTTTTGGTTTA+GGG + chr2_2:2992132-2992151 Msa0230770:five_prime_UTR 15.0%
!! TTTATCACATTTGATTAATT+TGG - chr2_2:2992685-2992704 None:intergenic 15.0%
!! AAATTAATCAAATGTGATAA+AGG + chr2_2:2992684-2992703 Msa0230770:CDS 15.0%
!! AATATGATAAAGCAATAATA+AGG - chr2_2:2993637-2993656 None:intergenic 15.0%
!!! TAATTTAGTTTATACTTTAC+AGG + chr2_2:2993791-2993810 Msa0230770:intron 15.0%
!! CAAATAGGATTAAAAATAAA+TGG - chr2_2:2993935-2993954 None:intergenic 15.0%
!!! CATTTATTTTTAATCCTATT+TGG + chr2_2:2993933-2993952 Msa0230770:intron 15.0%
!! TAATAATGATTCTCAATATT+GGG - chr2_2:2994278-2994297 None:intergenic 15.0%
!! ATAATAATGATTCTCAATAT+TGG - chr2_2:2994279-2994298 None:intergenic 15.0%
!!! TTTTCTTACAAAGTTTTTTT+TGG + chr2_2:2994781-2994800 Msa0230770:intron 15.0%
!! GTTAAACAATAGAAAAATAA+AGG + chr2_2:2994820-2994839 Msa0230770:intron 15.0%
!! TTTAGAAAATCTTAAACTAA+CGG - chr2_2:2994980-2994999 None:intergenic 15.0%
!!! TTGAAATAATCTAAAACAAA+CGG + chr2_2:2995314-2995333 Msa0230770:intron 15.0%
!!! TCATTTGAAATCAATTAATT+TGG - chr2_2:2995389-2995408 None:intergenic 15.0%
!! GCAAAAACAAAAATAATATA+AGG - chr2_2:2995640-2995659 None:intergenic 15.0%
!!! TATATTATTTTTGTTTTTGC+AGG + chr2_2:2995640-2995659 Msa0230770:intron 15.0%
!! ATTATATAATATAACAGCTT+GGG - chr2_2:2995945-2995964 None:intergenic 15.0%
!! AATTATATAATATAACAGCT+TGG - chr2_2:2995946-2995965 None:intergenic 15.0%
!!! TATTAATAATTTTTATTCCC+GGG - chr2_2:2995970-2995989 None:intergenic 15.0%
!!! TATTATTCTCATTATTGATT+TGG + chr2_2:2998365-2998384 Msa0230770:three_prime_UTR 15.0%
!!! TTGATTAATTTGGAAACATT+TGG - chr2_2:2992675-2992694 None:intergenic 20.0%
!!! AATTCAATGTTTGAATTTTC+TGG + chr2_2:2992924-2992943 Msa0230770:CDS 20.0%
!!! ATTCAATGTTTGAATTTTCT+GGG + chr2_2:2992925-2992944 Msa0230770:CDS 20.0%
!!! TGAACCTGTTTTATTTATAA+CGG + chr2_2:2993276-2993295 Msa0230770:intron 20.0%
!! AGAATATGATACTTGATAAA+TGG + chr2_2:2993719-2993738 Msa0230770:intron 20.0%
!!! TAAATGGTTCTAGTTAAATT+AGG + chr2_2:2993735-2993754 Msa0230770:intron 20.0%
!! TAATTATGAAAAGCAATAGT+TGG - chr2_2:2993973-2993992 None:intergenic 20.0%
!!! TTTCAATTTTTTCTGAACAT+CGG - chr2_2:2994134-2994153 None:intergenic 20.0%
!! TCAGAAAAAATTGAAAGAAA+TGG + chr2_2:2994138-2994157 Msa0230770:CDS 20.0%
!!! ATTTTTAACATATCCTGAAA+AGG - chr2_2:2994255-2994274 None:intergenic 20.0%
!! TAGAATATCTCTTCATTTAT+TGG + chr2_2:2994369-2994388 Msa0230770:intron 20.0%
!! TTTGTATTTCATTCTTATTG+TGG - chr2_2:2994425-2994444 None:intergenic 20.0%
!! GGTTATTAGTTATATATTAG+AGG + chr2_2:2994560-2994579 Msa0230770:intron 20.0%
!!! TAAGAAAAGTATATAAACCA+TGG - chr2_2:2995249-2995268 None:intergenic 20.0%
!!! CATTTTTGCTGTAAATAATT+TGG - chr2_2:2995291-2995310 None:intergenic 20.0%
!!! CAAAAATAGCACAAATTTTA+GGG - chr2_2:2995340-2995359 None:intergenic 20.0%
!!! TCAAAAATAGCACAAATTTT+AGG - chr2_2:2995341-2995360 None:intergenic 20.0%
!! TGAGGAAAATAAAATTGTTA+GGG - chr2_2:2995465-2995484 None:intergenic 20.0%
!! TGTTATATTATATAATTGCC+CGG + chr2_2:2995949-2995968 Msa0230770:intron 20.0%
!! GAATATAGATATGCTATATA+GGG - chr2_2:2996129-2996148 None:intergenic 20.0%
!! AGAATATAGATATGCTATAT+AGG - chr2_2:2996130-2996149 None:intergenic 20.0%
!!! GTTGATGTTTTATTTCATTT+TGG + chr2_2:2996298-2996317 Msa0230770:intron 20.0%
!!! AACAAAATTTCATTTGGTTT+TGG - chr2_2:2996368-2996387 None:intergenic 20.0%
!!! AAAACCAAATGAAATTTTGT+TGG + chr2_2:2996367-2996386 Msa0230770:intron 20.0%
!! AAATTACCATTCTGTAATAA+GGG - chr2_2:2996507-2996526 None:intergenic 20.0%
!! TAAATTACCATTCTGTAATA+AGG - chr2_2:2996508-2996527 None:intergenic 20.0%
!! ATTTCATGAAATCAAAATTC+AGG - chr2_2:2996550-2996569 None:intergenic 20.0%
!! AAGGAAACAAATTTAAAAGA+GGG - chr2_2:2996590-2996609 None:intergenic 20.0%
!!! TTTGTTGTCATTTATTGATT+TGG + chr2_2:2997136-2997155 Msa0230770:intron 20.0%
!! AGATGTTAATATAAATTCAG+CGG + chr2_2:2997667-2997686 Msa0230770:CDS 20.0%
!! GATAAGTTGTAAGTTATTTA+AGG + chr2_2:2998148-2998167 Msa0230770:three_prime_UTR 20.0%
!! ATAAAAGTCTACATTAATAG+CGG - chr2_2:2998202-2998221 None:intergenic 20.0%
! TGAGAGTTATTTACTTAGTA+TGG + chr2_2:2992449-2992468 Msa0230770:exon 25.0%
! ACGATATATCTTCTGATATA+AGG + chr2_2:2992538-2992557 Msa0230770:CDS 25.0%
! AAATTGTGTTTGATATCTGT+TGG + chr2_2:2993193-2993212 Msa0230770:intron 25.0%
!!! ATAGTTTTGAAGAATCAGAA+TGG + chr2_2:2993319-2993338 Msa0230770:intron 25.0%
!! TTTGAAATTCTATGTGCATT+TGG + chr2_2:2993422-2993441 Msa0230770:intron 25.0%
! CATAACAACAGTAGATATAA+TGG - chr2_2:2993490-2993509 None:intergenic 25.0%
! TTATCATATTCTGATTAAGC+TGG + chr2_2:2993647-2993666 Msa0230770:intron 25.0%
! TATCATATTCTGATTAAGCT+GGG + chr2_2:2993648-2993667 Msa0230770:intron 25.0%
!!! AGTTAAATTAGGATTGGTTT+TGG + chr2_2:2993746-2993765 Msa0230770:intron 25.0%
! AACTTTAATTGATTGTCCTA+GGG + chr2_2:2993870-2993889 Msa0230770:intron 25.0%
! ATTAAAAATAAATGGGAGCT+GGG - chr2_2:2993927-2993946 None:intergenic 25.0%
!! TTTCACAAACCTTTTCATTT+GGG - chr2_2:2994222-2994241 None:intergenic 25.0%
!! ATTTCACAAACCTTTTCATT+TGG - chr2_2:2994223-2994242 None:intergenic 25.0%
!! AAATTATGCTTTTCCTTTTC+AGG + chr2_2:2994239-2994258 Msa0230770:intron 25.0%
! TATAACTAATAACCTACATG+TGG - chr2_2:2994554-2994573 None:intergenic 25.0%
! TTAAAAAAATTGTTACCGTG+AGG + chr2_2:2994897-2994916 Msa0230770:intron 25.0%
!!! TGTGCTATTTTTGATTTGTA+AGG + chr2_2:2995347-2995366 Msa0230770:intron 25.0%
! GTGAGGAAAATAAAATTGTT+AGG - chr2_2:2995466-2995485 None:intergenic 25.0%
!!! ATTTTATTTTCCTCACAGTT+TGG + chr2_2:2995470-2995489 Msa0230770:intron 25.0%
! TTATGTGAATAAGAACTTGA+TGG - chr2_2:2995533-2995552 None:intergenic 25.0%
! ATCAAGTTCTTATTCACATA+AGG + chr2_2:2995532-2995551 Msa0230770:CDS 25.0%
! AAAATTTATCGCATAATCAG+TGG + chr2_2:2995705-2995724 Msa0230770:CDS 25.0%
! GTAAATAAAGGTTTATAGCA+TGG - chr2_2:2995826-2995845 None:intergenic 25.0%
! GTTATATTATATAATTGCCC+GGG + chr2_2:2995950-2995969 Msa0230770:intron 25.0%
! TGTATTCCTTATATGTAAGT+AGG + chr2_2:2995995-2996014 Msa0230770:intron 25.0%
! GTATTCCTTATATGTAAGTA+GGG + chr2_2:2995996-2996015 Msa0230770:intron 25.0%
! TATTCCTTATATGTAAGTAG+GGG + chr2_2:2995997-2996016 Msa0230770:intron 25.0%
! AAAACATCAACAAGCATTAT+GGG - chr2_2:2996289-2996308 None:intergenic 25.0%
! TAAAACATCAACAAGCATTA+TGG - chr2_2:2996290-2996309 None:intergenic 25.0%
!!! AAAATTTCATTTGGTTTTGG+AGG - chr2_2:2996365-2996384 None:intergenic 25.0%
! TTCTCCAACAAAATTTCATT+TGG - chr2_2:2996374-2996393 None:intergenic 25.0%
! GTATGTTTCAGTACTTAATA+AGG - chr2_2:2996479-2996498 None:intergenic 25.0%
! TTCATGAAATTAAATTCCCA+TGG + chr2_2:2996560-2996579 Msa0230770:intron 25.0%
! GAAGGAAACAAATTTAAAAG+AGG - chr2_2:2996591-2996610 None:intergenic 25.0%
! AATGATGAAACATTTCAAAC+TGG - chr2_2:2996646-2996665 None:intergenic 25.0%
! TGATTTATTATGATTAGACG+AGG - chr2_2:2996906-2996925 None:intergenic 25.0%
! AGGAAAATTACTAAATCAGT+GGG + chr2_2:2996952-2996971 Msa0230770:intron 25.0%
! TTGTTTATATTCACATGTAG+TGG + chr2_2:2996991-2997010 Msa0230770:intron 25.0%
!!! AATTCACTGTATTTTAACCT+TGG + chr2_2:2997102-2997121 Msa0230770:intron 25.0%
! CAATAAATGACAACAAACTT+CGG - chr2_2:2997133-2997152 None:intergenic 25.0%
!! TGTTATAACATGAAGTATTC+CGG - chr2_2:2997194-2997213 None:intergenic 25.0%
! GAATTTATATTAACATCTGC+TGG - chr2_2:2997665-2997684 None:intergenic 25.0%
!!! TCAACAAATTTTAGAAGCTT+GGG - chr2_2:2997728-2997747 None:intergenic 25.0%
! AGAAGGGAAAAATTTCTTTA+CGG + chr2_2:2997822-2997841 Msa0230770:CDS 25.0%
!!! GAACTAAGTGTTCATTTTTT+AGG + chr2_2:2997963-2997982 Msa0230770:three_prime_UTR 25.0%
!!! TAAGTGTTCATTTTTTAGGA+GGG + chr2_2:2997967-2997986 Msa0230770:three_prime_UTR 25.0%
!!! GTGTTTTAATCACAGTAAAA+AGG - chr2_2:2998066-2998085 None:intergenic 25.0%
!! TAAGTTATTTAAGGAGTGTA+GGG + chr2_2:2998157-2998176 Msa0230770:three_prime_UTR 25.0%
! ACTTATCTAATCAAAACAAG+AGG - chr2_2:2998280-2998299 None:intergenic 25.0%
!!! CTTGTTTTGATTAGATAAGT+TGG + chr2_2:2998280-2998299 Msa0230770:three_prime_UTR 25.0%
! AGCAACTTTCATATTTAACT+TGG + chr2_2:2998465-2998484 Msa0230770:three_prime_UTR 25.0%
TTGTACACTATGCACAATTT+GGG + chr2_2:2992319-2992338 Msa0230770:intron 30.0%
!! ATAAGGCTCAAGTTTTGTAA+AGG + chr2_2:2992555-2992574 Msa0230770:CDS 30.0%
TGAAGATAATGATGTAAGAG+AGG + chr2_2:2992623-2992642 Msa0230770:CDS 30.0%
! TGATGTTTTGTCTTTTCAAC+AGG + chr2_2:2992728-2992747 Msa0230770:CDS 30.0%
TAAATATGACCTATCAAGGA+AGG - chr2_2:2993223-2993242 None:intergenic 30.0%
TTCCTTGATAGGTCATATTT+AGG + chr2_2:2993222-2993241 Msa0230770:intron 30.0%
ACAGCCGTTATAAATAAAAC+AGG - chr2_2:2993283-2993302 None:intergenic 30.0%
ACAGATAGATGCAAAAATAC+TGG - chr2_2:2993558-2993577 None:intergenic 30.0%
! GGTTCTAGTTAAATTAGGAT+TGG + chr2_2:2993740-2993759 Msa0230770:intron 30.0%
TTAATGCAACAATTCTCTTG+AGG + chr2_2:2993832-2993851 Msa0230770:intron 30.0%
CAACTTTAATTGATTGTCCT+AGG + chr2_2:2993869-2993888 Msa0230770:intron 30.0%
ACTTTAATTGATTGTCCTAG+GGG + chr2_2:2993871-2993890 Msa0230770:intron 30.0%
AATTGAATTAGATAACCCCT+AGG - chr2_2:2993889-2993908 None:intergenic 30.0%
AGGGGTTATCTAATTCAATT+AGG + chr2_2:2993889-2993908 Msa0230770:intron 30.0%
GATTAAAAATAAATGGGAGC+TGG - chr2_2:2993928-2993947 None:intergenic 30.0%
GAAAAGCAATCGATAAATCT+GGG - chr2_2:2993997-2994016 None:intergenic 30.0%
TGAAAAGCAATCGATAAATC+TGG - chr2_2:2993998-2994017 None:intergenic 30.0%
!! TTGCTTTTCATAATTAACCC+AGG + chr2_2:2993977-2993996 Msa0230770:intron 30.0%
CTTCATACCAACAATAACAT+GGG - chr2_2:2994053-2994072 None:intergenic 30.0%
TCTTCATACCAACAATAACA+TGG - chr2_2:2994054-2994073 None:intergenic 30.0%
TGTTATTGTTGGTATGAAGA+TGG + chr2_2:2994054-2994073 Msa0230770:CDS 30.0%
GTTATTGTTGGTATGAAGAT+GGG + chr2_2:2994055-2994074 Msa0230770:CDS 30.0%
TGAAAGAAATGGCAGATAAA+AGG + chr2_2:2994149-2994168 Msa0230770:CDS 30.0%
! TCAAGTTTTCCCAAATGAAA+AGG + chr2_2:2994210-2994229 Msa0230770:CDS 30.0%
! GAAGTACTTTGTGATAAAGA+GGG - chr2_2:2994403-2994422 None:intergenic 30.0%
GCTTAATTCCAGAAAATTCA+GGG - chr2_2:2994586-2994605 None:intergenic 30.0%
TGCTTAATTCCAGAAAATTC+AGG - chr2_2:2994587-2994606 None:intergenic 30.0%
!!! GAATTTTCTGGAATTAAGCA+AGG + chr2_2:2994587-2994606 Msa0230770:intron 30.0%
AAGTTCTTATTCACATAAGG+AGG + chr2_2:2995535-2995554 Msa0230770:CDS 30.0%
! ATATAGTAAGCTTTTGCAAG+AGG + chr2_2:2995663-2995682 Msa0230770:CDS 30.0%
CCATTTAATAGAGAGGTAAT+TGG - chr2_2:2995779-2995798 None:intergenic 30.0%
CCAATTACCTCTCTATTAAA+TGG + chr2_2:2995776-2995795 Msa0230770:CDS 30.0%
TTTGCTCACATCGTAAATAA+AGG - chr2_2:2995838-2995857 None:intergenic 30.0%
ATTCCTTATATGTAAGTAGG+GGG + chr2_2:2995998-2996017 Msa0230770:intron 30.0%
!! TGGTTTGTATTTGGTAGTTT+TGG + chr2_2:2996035-2996054 Msa0230770:intron 30.0%
! GGAAAAAGTTCATTCTCTTT+TGG + chr2_2:2996056-2996075 Msa0230770:intron 30.0%
TAGATCATTAGGAACTTATC+AGG + chr2_2:2996230-2996249 Msa0230770:intron 30.0%
TCTGGTTGTAAAAACTATAG+TGG - chr2_2:2996258-2996277 None:intergenic 30.0%
ATATGATCAGTCAACAATGA+AGG - chr2_2:2996609-2996628 None:intergenic 30.0%
! ATCTTTACAGTTTAGCTTCA+TGG + chr2_2:2996799-2996818 Msa0230770:CDS 30.0%
! TCTTTACAGTTTAGCTTCAT+GGG + chr2_2:2996800-2996819 Msa0230770:CDS 30.0%
TGAATAAAGATTTACCGGTA+TGG - chr2_2:2996846-2996865 None:intergenic 30.0%
CCAGATGAATAAAGATTTAC+CGG - chr2_2:2996851-2996870 None:intergenic 30.0%
GAGGAAAATTACTAAATCAG+TGG + chr2_2:2996951-2996970 Msa0230770:intron 30.0%
! GTTATAACATGAAGTATTCC+GGG - chr2_2:2997193-2997212 None:intergenic 30.0%
GGAATACTTCATGTTATAAC+AGG + chr2_2:2997193-2997212 Msa0230770:intron 30.0%
!! ATGTTATAACAGGTTGATGT+AGG + chr2_2:2997203-2997222 Msa0230770:intron 30.0%
TAGAAGGTAAGAAAAGCAAT+CGG + chr2_2:2997258-2997277 Msa0230770:CDS 30.0%
!! TTTCGTCTGAAGTTTTCATT+TGG - chr2_2:2997344-2997363 None:intergenic 30.0%
CTCATAGAATCTCTTATCAT+AGG - chr2_2:2997369-2997388 None:intergenic 30.0%
TGATAAGAGATTCTATGAGA+AGG + chr2_2:2997370-2997389 Msa0230770:CDS 30.0%
! CAATTGCAAGTTGAGAATTA+TGG + chr2_2:2997470-2997489 Msa0230770:CDS 30.0%
ACTTAAATTCTCAACTGTGT+TGG + chr2_2:2997517-2997536 Msa0230770:CDS 30.0%
CTTAAATTCTCAACTGTGTT+GGG + chr2_2:2997518-2997537 Msa0230770:CDS 30.0%
!! GTCAACAAATTTTAGAAGCT+TGG - chr2_2:2997729-2997748 None:intergenic 30.0%
GAAGGGAAAAATTTCTTTAC+GGG + chr2_2:2997823-2997842 Msa0230770:CDS 30.0%
! TTTGTTGACTATGATGTTAC+CGG + chr2_2:2997856-2997875 Msa0230770:CDS 30.0%
TCATAATCATCATCATCATC+CGG - chr2_2:2997878-2997897 None:intergenic 30.0%
!!! CTAAGTGTTCATTTTTTAGG+AGG + chr2_2:2997966-2997985 Msa0230770:three_prime_UTR 30.0%
GTATTCGTCATCAAGATAAT+TGG + chr2_2:2998012-2998031 Msa0230770:three_prime_UTR 30.0%
!!! TGGTTTTAGTTTTCCTAATC+AGG + chr2_2:2998032-2998051 Msa0230770:three_prime_UTR 30.0%
!!! TTTAGTTTTCCTAATCAGGT+AGG + chr2_2:2998036-2998055 Msa0230770:three_prime_UTR 30.0%
!! TTAGTTTTCCTAATCAGGTA+GGG + chr2_2:2998037-2998056 Msa0230770:three_prime_UTR 30.0%
TCATGAAGAGATACATACAA+TGG + chr2_2:2998093-2998112 Msa0230770:three_prime_UTR 30.0%
!! TTTTGAAGAGATTGATGTGA+AGG + chr2_2:2998123-2998142 Msa0230770:three_prime_UTR 30.0%
TTTGAAGAGATTGATGTGAA+GGG + chr2_2:2998124-2998143 Msa0230770:three_prime_UTR 30.0%
! GTAAGTTATTTAAGGAGTGT+AGG + chr2_2:2998156-2998175 Msa0230770:three_prime_UTR 30.0%
! AAGTTATTTAAGGAGTGTAG+GGG + chr2_2:2998158-2998177 Msa0230770:three_prime_UTR 30.0%
!!! AAATCAGCTAGTCATTTTTC+TGG - chr2_2:2998228-2998247 None:intergenic 30.0%
TGGAAATTATAGACGAACTT+TGG + chr2_2:2998385-2998404 Msa0230770:three_prime_UTR 30.0%
ACTACATTAGAGATCTATGT+TGG + chr2_2:2998425-2998444 Msa0230770:three_prime_UTR 30.0%
TTTGTCTTTGCATGTCTTGT+TGG + chr2_2:2992274-2992293 Msa0230770:intron 35.0%
GTTGTACACTATGCACAATT+TGG + chr2_2:2992318-2992337 Msa0230770:intron 35.0%
ATGGCACCTAAAAATGAAGA+TGG + chr2_2:2992468-2992487 Msa0230770:CDS 35.0%
!! TGAGCTCCATCTTCATTTTT+AGG - chr2_2:2992477-2992496 None:intergenic 35.0%
AGATAATGATGTAAGAGAGG+TGG + chr2_2:2992626-2992645 Msa0230770:CDS 35.0%
! TAGGAGATTCTGAAAACAGA+AGG - chr2_2:2992774-2992793 None:intergenic 35.0%
CAAAGCAAAGCAAAGCAATT+AGG - chr2_2:2992793-2992812 None:intergenic 35.0%
ATTGAATTGAAAAGCCCTGA+GGG - chr2_2:2992912-2992931 None:intergenic 35.0%
!! TGTTTGAATTTTCTGGGAGT+TGG + chr2_2:2992931-2992950 Msa0230770:CDS 35.0%
AATGATGTATGTAGCCAACA+AGG + chr2_2:2993139-2993158 Msa0230770:intron 35.0%
ATGATGTATGTAGCCAACAA+GGG + chr2_2:2993140-2993159 Msa0230770:intron 35.0%
TGCCTAAATATGACCTATCA+AGG - chr2_2:2993227-2993246 None:intergenic 35.0%
! TACACACACACAGTTCATTT+TGG + chr2_2:2993248-2993267 Msa0230770:intron 35.0%
CACTGCAGTTATATAAATCC+TGG - chr2_2:2993515-2993534 None:intergenic 35.0%
!!! AATTTTTTCTGAACATCGGC+AGG - chr2_2:2994130-2994149 None:intergenic 35.0%
AATGGCAGATAAAAGGTTTC+TGG + chr2_2:2994156-2994175 Msa0230770:CDS 35.0%
!! GGAAGTACTTTGTGATAAAG+AGG - chr2_2:2994404-2994423 None:intergenic 35.0%
! TCACATGTTTTCTTGGATCT+AGG - chr2_2:2994622-2994641 None:intergenic 35.0%
!!! AAAGCTTTTAGTTTTGAGCC+AGG + chr2_2:2994663-2994682 Msa0230770:intron 35.0%
GCTGAATAACAAATTGTTCC+TGG - chr2_2:2994684-2994703 None:intergenic 35.0%
!! GTAGATGTGTTGCTATTTCA+TGG + chr2_2:2994711-2994730 Msa0230770:intron 35.0%
!! TTGCTATTTCATGGAAGCAT+CGG + chr2_2:2994720-2994739 Msa0230770:intron 35.0%
!!! GGAATATAGTTTTTTCCGAG+TGG + chr2_2:2994741-2994760 Msa0230770:intron 35.0%
!!! TATAGTTTTTTCCGAGTGGA+TGG + chr2_2:2994745-2994764 Msa0230770:intron 35.0%
!! TGGATAACATTTTGACCTCA+CGG - chr2_2:2994915-2994934 None:intergenic 35.0%
! ATGTTATCCAATGACTTGCA+TGG + chr2_2:2994925-2994944 Msa0230770:intron 35.0%
! TGTTATCCAATGACTTGCAT+GGG + chr2_2:2994926-2994945 Msa0230770:intron 35.0%
!!! CTTGAATGCTTTTTCAACCA+TGG + chr2_2:2995229-2995248 Msa0230770:intron 35.0%
GTATGCTTAGAACATTTACC+CGG + chr2_2:2995557-2995576 Msa0230770:intron 35.0%
TAGAGAGGTAATTGGAATGA+AGG - chr2_2:2995771-2995790 None:intergenic 35.0%
TGGAACTCCATTTAATAGAG+AGG - chr2_2:2995786-2995805 None:intergenic 35.0%
TCTCTATTAAATGGAGTTCC+AGG + chr2_2:2995785-2995804 Msa0230770:CDS 35.0%
CTCTATTAAATGGAGTTCCA+GGG + chr2_2:2995786-2995805 Msa0230770:CDS 35.0%
TAACCCCCTACTTACATATA+AGG - chr2_2:2996004-2996023 None:intergenic 35.0%
TTATATGTAAGTAGGGGGTT+AGG + chr2_2:2996003-2996022 Msa0230770:intron 35.0%
AAGTTAATATCTCGCCCAAA+GGG + chr2_2:2996189-2996208 Msa0230770:intron 35.0%
TTCCTAATGATCTACTTACG+CGG - chr2_2:2996224-2996243 None:intergenic 35.0%
!!! AGCATTTTTCAAGTCCTTGT+GGG - chr2_2:2996434-2996453 None:intergenic 35.0%
TTTAAAAGAGGGTGATCCAT+GGG - chr2_2:2996579-2996598 None:intergenic 35.0%
ATTTAAAAGAGGGTGATCCA+TGG - chr2_2:2996580-2996599 None:intergenic 35.0%
! CTTTACAGTTTAGCTTCATG+GGG + chr2_2:2996801-2996820 Msa0230770:CDS 35.0%
CCGGTAAATCTTTATTCATC+TGG + chr2_2:2996848-2996867 Msa0230770:CDS 35.0%
! GCATCTTTATTTGCAAGTCT+AGG - chr2_2:2997019-2997038 None:intergenic 35.0%
GCAACATTTATTCTAATGCC+CGG + chr2_2:2997172-2997191 Msa0230770:intron 35.0%
TCTTACCTTCTAGATAGAGA+CGG - chr2_2:2997250-2997269 None:intergenic 35.0%
!! AGATTTTTGGAAGGGATGAA+AGG - chr2_2:2997304-2997323 None:intergenic 35.0%
!! AAGCTGGAAGATTTTTGGAA+GGG - chr2_2:2997312-2997331 None:intergenic 35.0%
! TCTTCAAGCTGGAAGATTTT+TGG - chr2_2:2997317-2997336 None:intergenic 35.0%
GATTCTATGAGAAGGTTCAA+TGG + chr2_2:2997378-2997397 Msa0230770:CDS 35.0%
TTATTAGCCAACACTTCACA+GGG + chr2_2:2997615-2997634 Msa0230770:CDS 35.0%
TATAAATTCAGCGGTCTATC+CGG + chr2_2:2997676-2997695 Msa0230770:CDS 35.0%
TGATGATTATGATGACACGT+TGG + chr2_2:2997886-2997905 Msa0230770:CDS 35.0%
TTGAAGAGATTGATGTGAAG+GGG + chr2_2:2998125-2998144 Msa0230770:three_prime_UTR 35.0%
! TAATAGCGGAATTACAACAG+TGG - chr2_2:2998188-2998207 None:intergenic 35.0%
! ACTAGCTGATTTAAGTCCAT+GGG + chr2_2:2998236-2998255 Msa0230770:three_prime_UTR 35.0%
! GAACTTTGGTGATCAAGAAA+TGG + chr2_2:2998399-2998418 Msa0230770:three_prime_UTR 35.0%
GTTATCTCTCTTGAGTTCAC+AGG + chr2_2:2992063-2992082 Msa0230770:five_prime_UTR 40.0%
! TTTGCATGTCTTGTTGGTGT+GGG + chr2_2:2992280-2992299 Msa0230770:intron 40.0%
AAAGCTGCTGAGATTGCAAT+TGG + chr2_2:2992498-2992517 Msa0230770:CDS 40.0%
GAGATTGCAATTGGATCCAT+TGG + chr2_2:2992507-2992526 Msa0230770:CDS 40.0%
TATATCGTATCCACGACCAA+TGG - chr2_2:2992526-2992545 None:intergenic 40.0%
TCATTCTCGCTTGATTGAGA+TGG + chr2_2:2992599-2992618 Msa0230770:CDS 40.0%
!! TTTGGTAATGAAACTCCACC+AGG - chr2_2:2992657-2992676 None:intergenic 40.0%
GAAAAGAAGCAAACCCTTGT+TGG - chr2_2:2992842-2992861 None:intergenic 40.0%
AATCAGGAGTTGTCTTTGAC+TGG + chr2_2:2992879-2992898 Msa0230770:CDS 40.0%
CATTGAATTGAAAAGCCCTG+AGG - chr2_2:2992913-2992932 None:intergenic 40.0%
TAACACCCCATCAAAAGCAA+GGG - chr2_2:2992982-2993001 None:intergenic 40.0%
TTAACACCCCATCAAAAGCA+AGG - chr2_2:2992983-2993002 None:intergenic 40.0%
AGAAAGCTGTTCCATCATCA+TGG + chr2_2:2993060-2993079 Msa0230770:CDS 40.0%
GAAAGCTGTTCCATCATCAT+GGG + chr2_2:2993061-2993080 Msa0230770:CDS 40.0%
!! GTTGGTAATCCTTCCTTGAT+AGG + chr2_2:2993211-2993230 Msa0230770:intron 40.0%
ATCTACTGTTGTTATGCTCC+AGG + chr2_2:2993494-2993513 Msa0230770:intron 40.0%
CAAAAAACAACTGAAACCCG+AGG - chr2_2:2993688-2993707 None:intergenic 40.0%
!! CCAAAGGTATCGATAAACCT+GGG - chr2_2:2994028-2994047 None:intergenic 40.0%
AACAATAACATGGGTGCCAA+AGG - chr2_2:2994044-2994063 None:intergenic 40.0%
TTTGGCACCCATGTTATTGT+TGG + chr2_2:2994043-2994062 Msa0230770:CDS 40.0%
ATTGTTGGTATGAAGATGGG+AGG + chr2_2:2994058-2994077 Msa0230770:CDS 40.0%
! AAAAGGTTTCTGGATGCCAA+TGG + chr2_2:2994166-2994185 Msa0230770:CDS 40.0%
GATCAGAAGCTGAGCTATAT+TGG - chr2_2:2994192-2994211 None:intergenic 40.0%
TTGTGATAAAGAGGGTCTAG+TGG - chr2_2:2994395-2994414 None:intergenic 40.0%
! ATTAGAGGCCCTGAATTTTC+TGG + chr2_2:2994575-2994594 Msa0230770:intron 40.0%
! CACTCAGTCACATGTTTTCT+TGG - chr2_2:2994629-2994648 None:intergenic 40.0%
CAAGAAAACATGTGACTGAG+TGG + chr2_2:2994627-2994646 Msa0230770:intron 40.0%
TGACTGAGTGGAAGTTTAAG+AGG + chr2_2:2994639-2994658 Msa0230770:intron 40.0%
TAGCAACACATCTACATTGC+AGG - chr2_2:2994706-2994725 None:intergenic 40.0%
AAATCTCAGAACCATCCACT+CGG - chr2_2:2994759-2994778 None:intergenic 40.0%
ACAACTGCACAAACTATGTG+AGG + chr2_2:2994848-2994867 Msa0230770:intron 40.0%
TGCACAAACTATGTGAGGTA+TGG + chr2_2:2994853-2994872 Msa0230770:intron 40.0%
GCACAAACTATGTGAGGTAT+GGG + chr2_2:2994854-2994873 Msa0230770:intron 40.0%
AGTTCACGTCAACTCTTGTT+AGG + chr2_2:2995430-2995449 Msa0230770:intron 40.0%
! TTTCCTCACAGTTTGGAATC+AGG + chr2_2:2995477-2995496 Msa0230770:intron 40.0%
AAGGACATTGAGATCACATC+AGG - chr2_2:2995752-2995771 None:intergenic 40.0%
!!! AACTGTTGCCTGTGTTGTTT+TGG + chr2_2:2995919-2995938 Msa0230770:intron 40.0%
TGAGAGTCATAGTTAGCTAG+AGG - chr2_2:2996157-2996176 None:intergenic 40.0%
CAAGTTAATATCTCGCCCAA+AGG + chr2_2:2996188-2996207 Msa0230770:intron 40.0%
ATCCGCGTAAGTAGATCATT+AGG + chr2_2:2996219-2996238 Msa0230770:intron 40.0%
! TAGTTTTTACAACCAGACCC+AGG + chr2_2:2996261-2996280 Msa0230770:intron 40.0%
AACAAGCATTATGGGTTCCT+GGG - chr2_2:2996281-2996300 None:intergenic 40.0%
!! GAAATGTGTGTGCTAGCTTT+AGG + chr2_2:2996391-2996410 Msa0230770:intron 40.0%
!! CTAGCTTTAGGAGTGTCTAT+AGG + chr2_2:2996403-2996422 Msa0230770:intron 40.0%
!!! CAGCATTTTTCAAGTCCTTG+TGG - chr2_2:2996435-2996454 None:intergenic 40.0%
CAGACACCCTTATTACAGAA+TGG + chr2_2:2996498-2996517 Msa0230770:intron 40.0%
AATTGGTGGAGCTCTTCAAT+TGG - chr2_2:2996695-2996714 None:intergenic 40.0%
GAAGCTGGAATTCCAAGAAT+TGG - chr2_2:2996712-2996731 None:intergenic 40.0%
AGAGGAAGATCACTGAATAC+AGG - chr2_2:2996749-2996768 None:intergenic 40.0%
GTATTCAGTGATCTTCCTCT+TGG + chr2_2:2996749-2996768 Msa0230770:CDS 40.0%
CTTTATTCATCTGGACGTCT+AGG + chr2_2:2996857-2996876 Msa0230770:CDS 40.0%
TAAATCATGCTCGTGTCCTT+TGG + chr2_2:2996919-2996938 Msa0230770:CDS 40.0%
TTTCCTCCAACACAAACCAA+AGG - chr2_2:2996938-2996957 None:intergenic 40.0%
! ATCAGTGGGAAGAAGCTTTT+AGG + chr2_2:2996966-2996985 Msa0230770:intron 40.0%
AACAAACTTCGGAATGTCCA+AGG - chr2_2:2997122-2997141 None:intergenic 40.0%
!! AACAGGTTGATGTAGGTAAG+AGG + chr2_2:2997210-2997229 Msa0230770:intron 40.0%
AGGTAAGAAAAGCAATCGGT+TGG + chr2_2:2997262-2997281 Msa0230770:CDS 40.0%
!! TGAAAGGTGTTGCATATGGA+TGG - chr2_2:2997288-2997307 None:intergenic 40.0%
!! CAAGCTGGAAGATTTTTGGA+AGG - chr2_2:2997313-2997332 None:intergenic 40.0%
CATTTGGATCATCTTCAAGC+TGG - chr2_2:2997328-2997347 None:intergenic 40.0%
GAGGAGCTTTCAATAGTAAC+CGG + chr2_2:2997443-2997462 Msa0230770:CDS 40.0%
AGTGGATATAAGTCCAGACT+TGG - chr2_2:2997594-2997613 None:intergenic 40.0%
!! GAAGTGTTGGCTAATAAGAG+TGG - chr2_2:2997612-2997631 None:intergenic 40.0%
CTTATTAGCCAACACTTCAC+AGG + chr2_2:2997614-2997633 Msa0230770:CDS 40.0%
TATTAGCCAACACTTCACAG+GGG + chr2_2:2997616-2997635 Msa0230770:CDS 40.0%
ATATTAACATCTGCTGGACG+AGG - chr2_2:2997659-2997678 None:intergenic 40.0%
ATAAATTCAGCGGTCTATCC+GGG + chr2_2:2997677-2997696 Msa0230770:CDS 40.0%
!! AGCAAGACTTTTGGTTGAGA+AGG + chr2_2:2997805-2997824 Msa0230770:CDS 40.0%
!! GCAAGACTTTTGGTTGAGAA+GGG + chr2_2:2997806-2997825 Msa0230770:CDS 40.0%
! AGCTGACTTTGTTCTTCGTT+AGG + chr2_2:2997918-2997937 Msa0230770:exon 40.0%
!! ACACTTAGTTCTGCTGATGA+AGG - chr2_2:2997954-2997973 None:intergenic 40.0%
!!! GTTCATTTTTTAGGAGGGAG+AGG + chr2_2:2997972-2997991 Msa0230770:three_prime_UTR 40.0%
!!! ATTTTTTAGGAGGGAGAGGT+TGG + chr2_2:2997976-2997995 Msa0230770:three_prime_UTR 40.0%
!!! TTTTTTAGGAGGGAGAGGTT+GGG + chr2_2:2997977-2997996 Msa0230770:three_prime_UTR 40.0%
TGAAGAGATTGATGTGAAGG+GGG + chr2_2:2998126-2998145 Msa0230770:three_prime_UTR 40.0%
! GACTAGCTGATTTAAGTCCA+TGG + chr2_2:2998235-2998254 Msa0230770:three_prime_UTR 40.0%
GACGATCCGCAAACAGTAAT+TGG + chr2_2:2992172-2992191 Msa0230770:five_prime_UTR 45.0%
GTGCAGCCAATTACTGTTTG+CGG - chr2_2:2992181-2992200 None:intergenic 45.0%
! CTTTGCATGTCTTGTTGGTG+TGG + chr2_2:2992279-2992298 Msa0230770:intron 45.0%
!! GTAAGAGAGGTGGTTTTACC+TGG + chr2_2:2992636-2992655 Msa0230770:CDS 45.0%
CAAAACATCAGACCTGAACC+TGG - chr2_2:2992718-2992737 None:intergenic 45.0%
!! AAACCCTTGTTGGCTTTGGA+GGG - chr2_2:2992832-2992851 None:intergenic 45.0%
!! AAGCAAACCCTTGTTGGCTT+TGG - chr2_2:2992836-2992855 None:intergenic 45.0%
CAACTCCTGATTGAACTGCT+CGG - chr2_2:2992871-2992890 None:intergenic 45.0%
TTGACTGGCAAAATTCCCTC+AGG + chr2_2:2992894-2992913 Msa0230770:CDS 45.0%
TGACTGGCAAAATTCCCTCA+GGG + chr2_2:2992895-2992914 Msa0230770:CDS 45.0%
!! ACCAAGACCCTTGCTTTTGA+TGG + chr2_2:2992972-2992991 Msa0230770:CDS 45.0%
!! CCAAGACCCTTGCTTTTGAT+GGG + chr2_2:2992973-2992992 Msa0230770:CDS 45.0%
!! CAAGACCCTTGCTTTTGATG+GGG + chr2_2:2992974-2992993 Msa0230770:CDS 45.0%
TCAACTCACCTTGCTAATGC+AGG - chr2_2:2993092-2993111 None:intergenic 45.0%
TGTATGTAGCCAACAAGGGT+CGG + chr2_2:2993144-2993163 Msa0230770:intron 45.0%
GGGCATTTGACATATCTCCT+CGG + chr2_2:2993668-2993687 Msa0230770:intron 45.0%
GGCATTTGACATATCTCCTC+GGG + chr2_2:2993669-2993688 Msa0230770:intron 45.0%
CAAGAGTCTCGAGTCCAAAT+AGG - chr2_2:2993950-2993969 None:intergenic 45.0%
CCCAGGTTTATCGATACCTT+TGG + chr2_2:2994025-2994044 Msa0230770:intron 45.0%
!! GCCAAAGGTATCGATAAACC+TGG - chr2_2:2994029-2994048 None:intergenic 45.0%
! TTTTCTGAACATCGGCAGGT+TGG - chr2_2:2994126-2994145 None:intergenic 45.0%
AGCTGAGCTATATTGGCCAT+TGG - chr2_2:2994185-2994204 None:intergenic 45.0%
AAACTGGCACGTACAAAGCT+AGG - chr2_2:2994462-2994481 None:intergenic 45.0%
GGAAAATCACGTGGGAAAAC+TGG - chr2_2:2994478-2994497 None:intergenic 45.0%
CCCTAGTTGAAGTCTCTTTG+GGG - chr2_2:2994503-2994522 None:intergenic 45.0%
CCCCAAAGAGACTTCAACTA+GGG + chr2_2:2994500-2994519 Msa0230770:intron 45.0%
CCCCTAGTTGAAGTCTCTTT+GGG - chr2_2:2994504-2994523 None:intergenic 45.0%
CCCAAAGAGACTTCAACTAG+GGG + chr2_2:2994501-2994520 Msa0230770:intron 45.0%
ACCCCTAGTTGAAGTCTCTT+TGG - chr2_2:2994505-2994524 None:intergenic 45.0%
TGAGACTTTCAGCCACATGT+AGG + chr2_2:2994539-2994558 Msa0230770:intron 45.0%
CATTCTCCCATGCAAGTCAT+TGG - chr2_2:2994935-2994954 None:intergenic 45.0%
! ATGACTTGCATGGGAGAATG+AGG + chr2_2:2994935-2994954 Msa0230770:intron 45.0%
! ATGAGGAGTGTGCGAGTATA+AGG + chr2_2:2994952-2994971 Msa0230770:intron 45.0%
! TGAGGAGTGTGCGAGTATAA+GGG + chr2_2:2994953-2994972 Msa0230770:intron 45.0%
CACGTCAACTCTTGTTAGGT+TGG + chr2_2:2995434-2995453 Msa0230770:intron 45.0%
! GTAAGCTTTTGCAAGAGGAG+AGG + chr2_2:2995668-2995687 Msa0230770:CDS 45.0%
CACATCAGGCTCCAATTGAA+CGG - chr2_2:2995738-2995757 None:intergenic 45.0%
TTAAATGGAGTTCCAGGGAG+TGG + chr2_2:2995791-2995810 Msa0230770:CDS 45.0%
!!! TTTTGGAGTTTCGCAACTCC+TGG + chr2_2:2996073-2996092 Msa0230770:intron 45.0%
ACTATAGCAACATGCTGTCC+AGG - chr2_2:2996094-2996113 None:intergenic 45.0%
CAACAAGCATTATGGGTTCC+TGG - chr2_2:2996282-2996301 None:intergenic 45.0%
!! GCTTTAGGAGTGTCTATAGG+TGG + chr2_2:2996406-2996425 Msa0230770:intron 45.0%
TGAAGAGCTCCACCAATTCT+TGG + chr2_2:2996697-2996716 Msa0230770:CDS 45.0%
GCTGGAATTCCAAGAATTGG+TGG - chr2_2:2996709-2996728 None:intergenic 45.0%
ATCTTCCTCTTGGTCCTCAA+TGG + chr2_2:2996759-2996778 Msa0230770:CDS 45.0%
TTGGTCCTCAATGGAAGCAA+CGG + chr2_2:2996768-2996787 Msa0230770:CDS 45.0%
!! TCGTGTCCTTTGGTTTGTGT+TGG + chr2_2:2996929-2996948 Msa0230770:intron 45.0%
!! TGTCCTTTGGTTTGTGTTGG+AGG + chr2_2:2996932-2996951 Msa0230770:intron 45.0%
!! GGGATGAAAGGTGTTGCATA+TGG - chr2_2:2997292-2997311 None:intergenic 45.0%
CTCAACTTGCAATTGTGCTC+CGG - chr2_2:2997465-2997484 None:intergenic 45.0%
TAAAACATCCCGAGTGGGAT+GGG + chr2_2:2997552-2997571 Msa0230770:CDS 45.0%
TAGAAGCTTGGGAGCTTGTA+CGG - chr2_2:2997717-2997736 None:intergenic 45.0%
GACACAACTGAGATGACTAG+AGG + chr2_2:2997746-2997765 Msa0230770:CDS 45.0%
! TGTCACTGGAGCAAGACTTT+TGG + chr2_2:2997796-2997815 Msa0230770:CDS 45.0%
CTGCTGATGAAGGCAAAGAA+AGG - chr2_2:2997944-2997963 None:intergenic 45.0%
AGAGGTTGGGAAAGAAAGGA+GGG + chr2_2:2997990-2998009 Msa0230770:three_prime_UTR 45.0%
! GTTTTCCTAATCAGGTAGGG+TGG + chr2_2:2998040-2998059 Msa0230770:three_prime_UTR 45.0%
GATTTAAGTCCATGGGTCTC+TGG + chr2_2:2998243-2998262 Msa0230770:three_prime_UTR 45.0%
!! TTATAAATATATAAATATTC+CGG - chr2_2:2995579-2995598 None:intergenic 5.0%
GCAATTGGATCCATTGGTCG+TGG + chr2_2:2992513-2992532 Msa0230770:CDS 50.0%
!! AGAGAGGTGGTTTTACCTGG+TGG + chr2_2:2992639-2992658 Msa0230770:CDS 50.0%
GTGATAAAGGTGAACGCACC+AGG + chr2_2:2992697-2992716 Msa0230770:CDS 50.0%
!! CAAACCCTTGTTGGCTTTGG+AGG - chr2_2:2992833-2992852 None:intergenic 50.0%
GATGACCGAGCAGTTCAATC+AGG + chr2_2:2992863-2992882 Msa0230770:intron 50.0%
CCCATCAAAAGCAAGGGTCT+TGG - chr2_2:2992976-2992995 None:intergenic 50.0%
CTCACCTTGCTAATGCAGGT+GGG - chr2_2:2993088-2993107 None:intergenic 50.0%
ACTCACCTTGCTAATGCAGG+TGG - chr2_2:2993089-2993108 None:intergenic 50.0%
TTGGGGCAGGAAAATCACGT+GGG - chr2_2:2994486-2994505 None:intergenic 50.0%
! TTTGGGGCAGGAAAATCACG+TGG - chr2_2:2994487-2994506 None:intergenic 50.0%
!! AGTTGAAGTCTCTTTGGGGC+AGG - chr2_2:2994499-2994518 None:intergenic 50.0%
GCCCCAAAGAGACTTCAACT+AGG + chr2_2:2994499-2994518 Msa0230770:intron 50.0%
TGTGAGGTATGGGTACAGTC+TGG + chr2_2:2994864-2994883 Msa0230770:intron 50.0%
GTGAGGTATGGGTACAGTCT+GGG + chr2_2:2994865-2994884 Msa0230770:intron 50.0%
TGAGGTATGGGTACAGTCTG+GGG + chr2_2:2994866-2994885 Msa0230770:intron 50.0%
CGTCCTGATTCCAAACTGTG+AGG - chr2_2:2995483-2995502 None:intergenic 50.0%
! AGCTTTTGCAAGAGGAGAGG+TGG + chr2_2:2995671-2995690 Msa0230770:CDS 50.0%
GTGGTTGCAGACCGTTCAAT+TGG + chr2_2:2995724-2995743 Msa0230770:CDS 50.0%
AGCTTGGGCCAAAACAACAC+AGG - chr2_2:2995930-2995949 None:intergenic 50.0%
GTCTATAGGTGGTTCCCACA+AGG + chr2_2:2996417-2996436 Msa0230770:intron 50.0%
TGGTGGAGCTCTTCAATTGG+TGG - chr2_2:2996692-2996711 None:intergenic 50.0%
TCTTGGAATTCCAGCTTCCC+AGG + chr2_2:2996714-2996733 Msa0230770:CDS 50.0%
TGCTTCCATTGAGGACCAAG+AGG - chr2_2:2996767-2996786 None:intergenic 50.0%
! AGTTTAGCTTCATGGGGCCA+AGG + chr2_2:2996807-2996826 Msa0230770:CDS 50.0%
ATGGTGTTCACGTAGAGCCT+TGG - chr2_2:2996827-2996846 None:intergenic 50.0%
GCTCTACGTGAACACCATAC+CGG + chr2_2:2996829-2996848 Msa0230770:CDS 50.0%
CTGGACGTCTAGGTATTCAG+TGG + chr2_2:2996867-2996886 Msa0230770:CDS 50.0%
CTAGGTATTCAGTGGCAGAC+TGG + chr2_2:2996875-2996894 Msa0230770:CDS 50.0%
GGTCTCCGTCTCTATCTAGA+AGG + chr2_2:2997242-2997261 Msa0230770:CDS 50.0%
CTCAACTGTGTTGGGAGCTA+AGG + chr2_2:2997526-2997545 Msa0230770:CDS 50.0%
AACTGTGTTGGGAGCTAAGG+AGG + chr2_2:2997529-2997548 Msa0230770:CDS 50.0%
AGGAGGTAAAACATCCCGAG+TGG + chr2_2:2997546-2997565 Msa0230770:CDS 50.0%
GGAGGTAAAACATCCCGAGT+GGG + chr2_2:2997547-2997566 Msa0230770:CDS 50.0%
GTAAAACATCCCGAGTGGGA+TGG + chr2_2:2997551-2997570 Msa0230770:CDS 50.0%
GAAAAGCCCCTGTGAAGTGT+TGG - chr2_2:2997625-2997644 None:intergenic 50.0%
TTAACATCTGCTGGACGAGG+AGG - chr2_2:2997656-2997675 None:intergenic 50.0%
AGAAGCTTGGGAGCTTGTAC+GGG - chr2_2:2997716-2997735 None:intergenic 50.0%
AGGGAGAGGTTGGGAAAGAA+AGG + chr2_2:2997986-2998005 Msa0230770:three_prime_UTR 50.0%
GAGAGGTTGGGAAAGAAAGG+AGG + chr2_2:2997989-2998008 Msa0230770:three_prime_UTR 50.0%
AAAGGCCACCCTACCTGATT+AGG - chr2_2:2998048-2998067 None:intergenic 50.0%
AAGGTGAACGCACCAGGTTC+AGG + chr2_2:2992703-2992722 Msa0230770:CDS 55.0%
!! CCTTGTTGGCTTTGGAGGGA+GGG - chr2_2:2992828-2992847 None:intergenic 55.0%
CCTCCCTCCAAAGCCAACAA+GGG + chr2_2:2992826-2992845 Msa0230770:intron 55.0%
CCAGTTAAGCCGACCCTTGT+TGG - chr2_2:2993156-2993175 None:intergenic 55.0%
! CCAACAAGGGTCGGCTTAAC+TGG + chr2_2:2993153-2993172 Msa0230770:intron 55.0%
! CAAGGGTCGGCTTAACTGGT+AGG + chr2_2:2993157-2993176 Msa0230770:intron 55.0%
TGGCTCAAGAATCCACTCCC+TGG - chr2_2:2995806-2995825 None:intergenic 55.0%
! CGCGGATCGATTCTCCCTTT+GGG - chr2_2:2996206-2996225 None:intergenic 55.0%
! ACGCGGATCGATTCTCCCTT+TGG - chr2_2:2996207-2996226 None:intergenic 55.0%
GCATTATGGGTTCCTGGGTC+TGG - chr2_2:2996276-2996295 None:intergenic 55.0%
AATTCCAGCTTCCCAGGCAG+TGG + chr2_2:2996720-2996739 Msa0230770:CDS 55.0%
ATTCCAGCTTCCCAGGCAGT+GGG + chr2_2:2996721-2996740 Msa0230770:CDS 55.0%
AATACAGGTGCCCACTGCCT+GGG - chr2_2:2996734-2996753 None:intergenic 55.0%
GAGCTCCGTTGCTTCCATTG+AGG - chr2_2:2996776-2996795 None:intergenic 55.0%
GTAGGTAAGAGGCCAGTGAC+TGG + chr2_2:2997221-2997240 Msa0230770:CDS 55.0%
TAGAGACGGAGACCAGTCAC+TGG - chr2_2:2997236-2997255 None:intergenic 55.0%
TCATGTGTGCACTGCTCCTG+TGG + chr2_2:2997412-2997431 Msa0230770:CDS 55.0%
CACTGCTCCTGTGGAATCTG+AGG + chr2_2:2997421-2997440 Msa0230770:CDS 55.0%
TGCTCCTGTGGAATCTGAGG+AGG + chr2_2:2997424-2997443 Msa0230770:CDS 55.0%
AGCTCCTCCTCAGATTCCAC+AGG - chr2_2:2997431-2997450 None:intergenic 55.0%
AATTCAGCGGTCTATCCGGG+CGG + chr2_2:2997680-2997699 Msa0230770:CDS 55.0%
GAGCTTGTACGGGAACAGGA+GGG - chr2_2:2997706-2997725 None:intergenic 55.0%
TTGGGAGCTTGTACGGGAAC+AGG - chr2_2:2997710-2997729 None:intergenic 55.0%
TGAGATGACTAGAGGACCGC+AGG + chr2_2:2997754-2997773 Msa0230770:CDS 55.0%
CAATAGCCAGGAGTCTCCTG+CGG - chr2_2:2997773-2997792 None:intergenic 55.0%
GCAGGAGACTCCTGGCTATT+GGG + chr2_2:2997772-2997791 Msa0230770:CDS 55.0%
CCAGTGACAACCCAATAGCC+AGG - chr2_2:2997785-2997804 None:intergenic 55.0%
! CCTGGCTATTGGGTTGTCAC+TGG + chr2_2:2997782-2997801 Msa0230770:CDS 55.0%
GATCATTCGCCAGAGACCCA+TGG - chr2_2:2998255-2998274 None:intergenic 55.0%
CCCTCCCTCCAAAGCCAACA+AGG + chr2_2:2992825-2992844 Msa0230770:intron 60.0%
!! CCCTTGTTGGCTTTGGAGGG+AGG - chr2_2:2992829-2992848 None:intergenic 60.0%
GCAGGTGGGTCCCATGATGA+TGG - chr2_2:2993074-2993093 None:intergenic 60.0%
GGGACCCACCTGCATTAGCA+AGG + chr2_2:2993081-2993100 Msa0230770:CDS 60.0%
GAATACAGGTGCCCACTGCC+TGG - chr2_2:2996735-2996754 None:intergenic 60.0%
ACATCTGCTGGACGAGGAGG+CGG - chr2_2:2997653-2997672 None:intergenic 60.0%
GGAGCTTGTACGGGAACAGG+AGG - chr2_2:2997707-2997726 None:intergenic 60.0%
CGCAGGAGACTCCTGGCTAT+TGG + chr2_2:2997771-2997790 Msa0230770:CDS 60.0%
TCCAGACTTGGCCCCTAGCC+CGG - chr2_2:2997582-2997601 None:intergenic 65.0%
AGAGGACCGCAGGAGACTCC+TGG + chr2_2:2997764-2997783 Msa0230770:CDS 65.0%
GTGCCCACTGCCTGGGAAGC+TGG - chr2_2:2996727-2996746 None:intergenic 70.0%
CCGGGAGACCCATCCCACTC+GGG - chr2_2:2997563-2997582 None:intergenic 70.0%
CCCGAGTGGGATGGGTCTCC+CGG + chr2_2:2997560-2997579 Msa0230770:CDS 70.0%
CCCGGGAGACCCATCCCACT+CGG - chr2_2:2997564-2997583 None:intergenic 70.0%
CCGAGTGGGATGGGTCTCCC+GGG + chr2_2:2997561-2997580 Msa0230770:CDS 70.0%
TGGGATGGGTCTCCCGGGCT+AGG + chr2_2:2997566-2997585 Msa0230770:CDS 70.0%
GGGATGGGTCTCCCGGGCTA+GGG + chr2_2:2997567-2997586 Msa0230770:CDS 70.0%
! GGATGGGTCTCCCGGGCTAG+GGG + chr2_2:2997568-2997587 Msa0230770:CDS 70.0%
CCAGACTTGGCCCCTAGCCC+GGG - chr2_2:2997581-2997600 None:intergenic 70.0%
! CCCGGGCTAGGGGCCAAGTC+TGG + chr2_2:2997578-2997597 Msa0230770:CDS 75.0%
ACGGGAACAGGAGGGCCGCC+CGG - chr2_2:2997698-2997717 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 2992029 2998522 2992029 ID=Msa0230770;Name=Msa0230770
chr2_2 mRNA 2992029 2998522 2992029 ID=Msa0230770-mRNA-1;Parent=Msa0230770;Name=Msa0230770-mRNA-1;_AED=0.14;_eAED=0.14;_QI=197|0.85|0.87|1|0.85|0.75|8|603|646
chr2_2 exon 2992029 2992206 2992029 ID=Msa0230770-mRNA-1:exon:1103;Parent=Msa0230770-mRNA-1
chr2_2 exon 2992449 2992749 2992449 ID=Msa0230770-mRNA-1:exon:1104;Parent=Msa0230770-mRNA-1
chr2_2 exon 2992864 2993102 2992864 ID=Msa0230770-mRNA-1:exon:1105;Parent=Msa0230770-mRNA-1
chr2_2 exon 2994030 2994231 2994030 ID=Msa0230770-mRNA-1:exon:1106;Parent=Msa0230770-mRNA-1
chr2_2 exon 2995488 2995556 2995488 ID=Msa0230770-mRNA-1:exon:1107;Parent=Msa0230770-mRNA-1
chr2_2 exon 2995662 2995848 2995662 ID=Msa0230770-mRNA-1:exon:1108;Parent=Msa0230770-mRNA-1
chr2_2 exon 2996684 2996940 2996684 ID=Msa0230770-mRNA-1:exon:1109;Parent=Msa0230770-mRNA-1
chr2_2 exon 2997215 2998522 2997215 ID=Msa0230770-mRNA-1:exon:1110;Parent=Msa0230770-mRNA-1
chr2_2 five_prime_UTR 2992029 2992206 2992029 ID=Msa0230770-mRNA-1:five_prime_utr;Parent=Msa0230770-mRNA-1
chr2_2 five_prime_UTR 2992449 2992467 2992449 ID=Msa0230770-mRNA-1:five_prime_utr;Parent=Msa0230770-mRNA-1
chr2_2 CDS 2992468 2992749 2992468 ID=Msa0230770-mRNA-1:cds;Parent=Msa0230770-mRNA-1
chr2_2 CDS 2992864 2993102 2992864 ID=Msa0230770-mRNA-1:cds;Parent=Msa0230770-mRNA-1
chr2_2 CDS 2994030 2994231 2994030 ID=Msa0230770-mRNA-1:cds;Parent=Msa0230770-mRNA-1
chr2_2 CDS 2995488 2995556 2995488 ID=Msa0230770-mRNA-1:cds;Parent=Msa0230770-mRNA-1
chr2_2 CDS 2995662 2995848 2995662 ID=Msa0230770-mRNA-1:cds;Parent=Msa0230770-mRNA-1
chr2_2 CDS 2996684 2996940 2996684 ID=Msa0230770-mRNA-1:cds;Parent=Msa0230770-mRNA-1
chr2_2 CDS 2997215 2997919 2997215 ID=Msa0230770-mRNA-1:cds;Parent=Msa0230770-mRNA-1
chr2_2 three_prime_UTR 2997920 2998522 2997920 ID=Msa0230770-mRNA-1:three_prime_utr;Parent=Msa0230770-mRNA-1
Gene Sequence

>Msa0230770

ATGGCACCTAAAAATGAAGATGGAGCTCATAAAGCTGCTGAGATTGCAATTGGATCCATTGGTCGTGGATACGATATATCTTCTGATATAAGGCTCAAGTTTTGTAAAGGTGATTCTAATTCTAATTCTATTCATTCTCGCTTGATTGAGATGGATGAAGATAATGATGTAAGAGAGGTGGTTTTACCTGGTGGAGTTTCATTACCAAATGTTTCCAAATTAATCAAATGTGATAAAGGTGAACGCACCAGGTTCAGGTCTGATGTTTTGTCTTTTCAACAGATGACCGAGCAGTTCAATCAGGAGTTGTCTTTGACTGGCAAAATTCCCTCAGGGCTTTTCAATTCAATGTTTGAATTTTCTGGGAGTTGGCAGAAAGATGCAGCGCATACCAAGACCCTTGCTTTTGATGGGGTGTTAATTACACTTTACACTGTTGCATTAGAGAAGTCTCAGATGCTACTTTGCGATCATGTTAAGAAAGCTGTTCCATCATCATGGGACCCACCTGCATTAGCAAGGTTTATCGATACCTTTGGCACCCATGTTATTGTTGGTATGAAGATGGGAGGAAAAGATGTAATATATTTAAAGCAGCAGCACTCATCAACTCTCCAACCTGCCGATGTTCAGAAAAAATTGAAAGAAATGGCAGATAAAAGGTTTCTGGATGCCAATGGCCAATATAGCTCAGCTTCTGATCAAGTTTTCCCAAATGAAAAGTTTGGAATCAGGACGCAGAGACTAACATTTGCTAATATTAGTCCATCAAGTTCTTATTCACATAAGGAGGATATAGTAAGCTTTTGCAAGAGGAGAGGTGGAAGTGATGACAAAAATTTATCGCATAATCAGTGGTTGCAGACCGTTCAATTGGAGCCTGATGTGATCTCAATGTCCTTCATTCCAATTACCTCTCTATTAAATGGAGTTCCAGGGAGTGGATTCTTGAGCCATGCTATAAACCTTTATTTACGATATAAACCACCAATTGAAGAGCTCCACCAATTCTTGGAATTCCAGCTTCCCAGGCAGTGGGCACCTGTATTCAGTGATCTTCCTCTTGGTCCTCAATGGAAGCAACGGAGCTCTGCATCTTTACAGTTTAGCTTCATGGGGCCAAGGCTCTACGTGAACACCATACCGGTAAATCTTTATTCATCTGGACGTCTAGGTATTCAGTGGCAGACTGGAAGTGCCTCGTCTAATCATAATAAATCATGCTCGTGTCCTTTGGTTGATGTAGGTAAGAGGCCAGTGACTGGTCTCCGTCTCTATCTAGAAGGTAAGAAAAGCAATCGGTTGGCCATCCATATGCAACACCTTTCATCCCTTCCAAAAATCTTCCAGCTTGAAGATGATCCAAATGAAAACTTCAGACGAAAGTCCTATGATAAGAGATTCTATGAGAAGGTTCAATGGAAGAATTTCTCTCATGTGTGCACTGCTCCTGTGGAATCTGAGGAGGAGCTTTCAATAGTAACCGGAGCACAATTGCAAGTTGAGAATTATGGCTTTAAAAATATACTCTTCTTAAGACTTAAATTCTCAACTGTGTTGGGAGCTAAGGAGGTAAAACATCCCGAGTGGGATGGGTCTCCCGGGCTAGGGGCCAAGTCTGGACTTATATCCACTCTTATTAGCCAACACTTCACAGGGGCTTTTCAGAAGCCGCCTCCTCGTCCAGCAGATGTTAATATAAATTCAGCGGTCTATCCGGGCGGCCCTCCTGTTCCCGTACAAGCTCCCAAGCTTCTAAAATTTGTTGACACAACTGAGATGACTAGAGGACCGCAGGAGACTCCTGGCTATTGGGTTGTCACTGGAGCAAGACTTTTGGTTGAGAAGGGAAAAATTTCTTTACGGGTTAAGTATTCTTTGTTGACTATGATGTTACCGGATGATGATGATGATTATGATGACACGTTGGATGATCAGTAG
Protein sequence

>Msa0230770

MAPKNEDGAHKAAEIAIGSIGRGYDISSDIRLKFCKGDSNSNSIHSRLIEMDEDNDVREVVLPGGVSLPNVSKLIKCDKGERTRFRSDVLSFQQMTEQFNQELSLTGKIPSGLFNSMFEFSGSWQKDAAHTKTLAFDGVLITLYTVALEKSQMLLCDHVKKAVPSSWDPPALARFIDTFGTHVIVGMKMGGKDVIYLKQQHSSTLQPADVQKKLKEMADKRFLDANGQYSSASDQVFPNEKFGIRTQRLTFANISPSSSYSHKEDIVSFCKRRGGSDDKNLSHNQWLQTVQLEPDVISMSFIPITSLLNGVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSDLPLGPQWKQRSSASLQFSFMGPRLYVNTIPVNLYSSGRLGIQWQTGSASSNHNKSCSCPLVDVGKRPVTGLRLYLEGKKSNRLAIHMQHLSSLPKIFQLEDDPNENFRRKSYDKRFYEKVQWKNFSHVCTAPVESEEELSIVTGAQLQVENYGFKNILFLRLKFSTVLGAKEVKHPEWDGSPGLGAKSGLISTLISQHFTGAFQKPPPRPADVNINSAVYPGGPPVPVQAPKLLKFVDTTEMTRGPQETPGYWVVTGARLLVEKGKISLRVKYSLLTMMLPDDDDDYDDTLDDQ*