AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0180380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0180380 MtrunA17_Chr1g0206651 95.238 252 12 0 1 252 1 252 0.0 502
Msa0180380 MtrunA17_Chr1g0206601 72.656 256 64 4 1 251 22 276 3.10e-135 382
Msa0180380 MtrunA17_Chr1g0206581 68.302 265 68 6 1 251 18 280 2.79e-126 360
Msa0180380 MtrunA17_Chr1g0154341 55.645 248 103 4 10 251 7 253 2.44e-92 273
Msa0180380 MtrunA17_Chr1g0154361 55.918 245 101 3 12 250 8 251 1.52e-91 272
Msa0180380 MtrunA17_Chr1g0206571 55.411 231 101 2 23 252 30 259 1.39e-85 257
Msa0180380 MtrunA17_Chr1g0154321 54.582 251 102 6 12 251 8 257 1.93e-85 270
Msa0180380 MtrunA17_Chr1g0154351 53.846 247 106 4 12 251 8 253 1.80e-83 262
Msa0180380 MtrunA17_Chr1g0154311 53.252 246 106 4 13 251 10 253 2.54e-80 254
Msa0180380 MtrunA17_Chr1g0206531 50.391 256 115 6 1 250 1 250 1.60e-77 246
Msa0180380 MtrunA17_Chr1g0154371 51.562 256 112 5 1 246 8 261 4.99e-75 240
Msa0180380 MtrunA17_Chr5g0428591 49.180 244 116 4 10 251 8 245 8.27e-75 228
Msa0180380 MtrunA17_Chr1g0206461 48.031 254 121 6 1 250 1 247 3.44e-71 229
Msa0180380 MtrunA17_Chr1g0206451 50.204 245 115 4 7 249 45 284 1.84e-66 218
Msa0180380 MtrunA17_Chr5g0428571 48.684 228 111 3 24 251 25 246 4.91e-66 213
Msa0180380 MtrunA17_Chr1g0206521 48.980 245 117 4 7 250 653 890 1.37e-63 214
Msa0180380 MtrunA17_Chr1g0206521 48.101 237 115 4 15 250 19 248 9.19e-60 204
Msa0180380 MtrunA17_Chr5g0428531 43.725 247 126 5 10 250 8 247 1.55e-61 195
Msa0180380 MtrunA17_Chr1g0206561 42.975 242 128 4 11 252 9 240 2.94e-56 190
Msa0180380 MtrunA17_Chr5g0426941 41.564 243 128 5 14 252 10 242 5.95e-53 181
Msa0180380 MtrunA17_Chr1g0206381 40.090 222 119 5 39 252 38 253 8.64e-49 163
Msa0180380 MtrunA17_Chr1g0206401 39.189 222 121 6 39 252 33 248 9.61e-45 159
Msa0180380 MtrunA17_Chr7g0234231 31.818 242 156 4 9 250 5 237 6.48e-40 138
Msa0180380 MtrunA17_Chr1g0206331 34.959 246 148 7 11 251 15 253 1.76e-35 133
Msa0180380 MtrunA17_Chr5g0428601 50.400 125 60 2 127 251 1 123 7.22e-34 125
Msa0180380 MtrunA17_Chr6g0475121 33.462 260 157 6 1 252 1 252 5.91e-33 125
Msa0180380 MtrunA17_Chr6g0475121 32.353 204 126 6 50 250 296 490 1.49e-22 96.3
Msa0180380 MtrunA17_Chr2g0323011 31.727 249 155 7 4 249 7 243 2.80e-32 118
Msa0180380 MtrunA17_Chr1g0205771 31.925 213 139 3 41 251 51 259 1.20e-31 122
Msa0180380 MtrunA17_Chr5g0394001 33.054 239 151 6 16 250 16 249 4.35e-31 120
Msa0180380 MtrunA17_Chr6g0475201 31.008 258 165 5 1 252 1 251 8.39e-30 117
Msa0180380 MtrunA17_Chr6g0475201 32.627 236 138 8 20 250 271 490 7.78e-27 108
Msa0180380 MtrunA17_Chr1g0206201 33.486 218 127 6 43 252 48 255 2.32e-29 111
Msa0180380 MtrunA17_Chr5g0393981 29.845 258 160 8 1 250 73 317 6.88e-29 114
Msa0180380 MtrunA17_Chr6g0475001 32.271 251 154 8 11 252 9 252 1.09e-28 114
Msa0180380 MtrunA17_Chr6g0475001 31.556 225 136 8 28 250 281 489 8.28e-19 85.5
Msa0180380 MtrunA17_Chr6g0474901 29.572 257 164 7 1 252 1 245 1.15e-28 114
Msa0180380 MtrunA17_Chr6g0474901 31.416 226 136 7 28 250 274 483 1.39e-22 96.7
Msa0180380 MtrunA17_Chr1g0206351 32.381 210 136 3 45 251 48 254 6.45e-28 112
Msa0180380 MtrunA17_Chr5g0394021 35.514 214 132 3 38 250 39 247 6.60e-28 111
Msa0180380 MtrunA17_Chr3g0081001 29.762 252 162 5 4 251 6 246 8.87e-28 111
Msa0180380 MtrunA17_Chr2g0322981 29.921 254 161 7 1 251 6 245 9.20e-28 106
Msa0180380 MtrunA17_Chr6g0474811 30.268 261 165 6 1 252 1 253 7.37e-27 108
Msa0180380 MtrunA17_Chr6g0474811 35.028 177 106 5 77 250 322 492 2.33e-20 90.1
Msa0180380 MtrunA17_Chr1g0206231 32.381 210 132 6 47 252 52 255 2.44e-26 107
Msa0180380 MtrunA17_Chr8g0347571 32.129 249 147 9 9 250 9 242 4.10e-26 106
Msa0180380 MtrunA17_Chr8g0347571 28.194 227 142 8 32 251 276 488 1.40e-16 79.0
Msa0180380 MtrunA17_Chr6g0474971 29.961 257 163 7 1 252 1 245 5.74e-26 103
Msa0180380 MtrunA17_Chr3g0081011 29.832 238 151 6 18 251 20 245 1.27e-25 105
Msa0180380 MtrunA17_Chr6g0474871 30.233 258 166 6 1 252 1 250 1.50e-25 105
Msa0180380 MtrunA17_Chr6g0474871 32.768 177 110 5 77 250 317 487 5.64e-19 85.9
Msa0180380 MtrunA17_Chr6g0475111 28.163 245 167 5 9 250 14 252 4.96e-25 103
Msa0180380 MtrunA17_Chr6g0475111 26.316 247 163 8 14 251 266 502 9.38e-18 82.4
Msa0180380 MtrunA17_Chr3g0081051 30.081 246 158 6 9 249 3 239 4.03e-24 97.4
Msa0180380 MtrunA17_Chr1g0206361 31.651 218 138 6 37 250 43 253 6.78e-24 100
Msa0180380 MtrunA17_Chr6g0475091 30.962 239 155 5 20 252 27 261 9.85e-24 99.8
Msa0180380 MtrunA17_Chr6g0475091 32.773 238 142 8 19 250 274 499 1.30e-20 90.9
Msa0180380 MtrunA17_Chr3g0081031 30.894 246 153 8 11 250 24 258 1.35e-23 99.4
Msa0180380 MtrunA17_Chr8g0354271 28.629 248 166 6 7 251 10 249 3.23e-23 98.2
Msa0180380 MtrunA17_Chr5g0394011 30.556 216 139 6 41 250 41 251 2.15e-22 95.9
Msa0180380 MtrunA17_Chr1g0206291 29.389 262 164 9 2 252 15 266 6.22e-22 94.4
Msa0180380 MtrunA17_Chr6g0474861 32.157 255 156 10 1 250 1 243 6.97e-22 94.4
Msa0180380 MtrunA17_Chr8g0354351 27.459 244 161 7 11 251 13 243 1.19e-20 90.9
Msa0180380 MtrunA17_Chr2g0280391 24.800 250 172 4 9 250 5 246 4.34e-19 84.3
Msa0180380 MtrunA17_Chr1g0206251 31.754 211 129 7 47 250 307 509 1.29e-18 84.7
Msa0180380 MtrunA17_Chr1g0206251 30.392 204 122 10 61 251 69 265 8.16e-14 70.5
Msa0180380 MtrunA17_Chr8g0354421 26.104 249 168 8 10 251 31 270 1.87e-17 81.6
Msa0180380 MtrunA17_Chr1g0206411 56.897 58 25 0 61 118 4 61 3.44e-17 74.3
Msa0180380 MtrunA17_Chr1g0206421 30.189 159 93 5 67 216 2 151 3.61e-17 80.5
Msa0180380 MtrunA17_Chr8g0354341 30.723 166 108 4 86 251 88 246 1.09e-16 77.4
Msa0180380 MtrunA17_Chr3g0119041 29.808 208 118 8 64 251 63 262 5.53e-16 77.0
Msa0180380 MtrunA17_Chr2g0280361 27.027 185 125 4 67 250 66 241 7.25e-16 75.1
Msa0180380 MtrunA17_Chr8g0354441 23.922 255 167 10 10 250 14 255 1.52e-15 75.9
Msa0180380 MtrunA17_Chr8g0354411 24.537 216 147 6 42 250 41 247 4.33e-15 73.6
Msa0180380 MtrunA17_Chr3g0082951 39.091 110 62 3 28 136 116 221 1.81e-13 67.8
Msa0180380 MtrunA17_Chr7g0230381 25.258 194 126 4 58 251 74 248 2.65e-13 67.8
Msa0180380 MtrunA17_Chr8g0354281 23.585 212 149 6 45 251 44 247 3.24e-13 68.9
Msa0180380 MtrunA17_Chr2g0280381 23.810 189 132 4 65 252 65 242 7.31e-12 63.9
Msa0180380 MtrunA17_Chr8g0354431 24.800 250 170 7 10 251 9 248 1.02e-11 64.3
Msa0180380 MtrunA17_Chr8g0391511 22.749 211 144 5 38 244 39 234 1.49e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0180380 AT4G21410.2 38.073 218 128 4 37 251 38 251 1.22e-38 141
Msa0180380 AT4G21410.3 38.073 218 128 4 37 251 38 251 3.41e-38 141
Msa0180380 AT3G22060.1 33.473 239 152 4 15 252 19 251 5.80e-37 131
Msa0180380 AT4G38830.1 36.697 218 132 4 35 250 32 245 7.71e-36 134
Msa0180380 AT4G21400.3 33.953 215 137 3 39 251 42 253 4.54e-34 128
Msa0180380 AT4G05200.2 35.060 251 148 8 5 250 26 266 5.70e-34 129
Msa0180380 AT4G05200.1 35.060 251 148 8 5 250 8 248 5.75e-34 129
Msa0180380 AT4G21400.6 33.953 215 137 3 39 251 42 253 5.75e-34 129
Msa0180380 AT4G21400.4 33.953 215 137 3 39 251 42 253 5.75e-34 129
Msa0180380 AT4G21400.5 33.953 215 137 3 39 251 42 253 5.75e-34 129
Msa0180380 AT4G21400.2 33.953 215 137 3 39 251 42 253 1.02e-33 129
Msa0180380 AT4G21400.1 33.953 215 137 3 39 251 42 253 1.33e-33 128
Msa0180380 AT4G23160.1 36.864 236 133 8 21 250 37 262 9.55e-33 126
Msa0180380 AT4G23160.3 36.864 236 133 8 21 250 617 842 1.37e-32 125
Msa0180380 AT4G23160.2 36.864 236 133 8 21 250 617 842 1.37e-32 125
Msa0180380 AT4G23220.1 32.243 214 144 1 39 251 29 242 1.56e-32 125
Msa0180380 AT4G23170.1 35.865 237 134 9 21 250 20 245 3.39e-32 119
Msa0180380 AT4G23180.3 36.325 234 134 8 21 250 31 253 4.00e-32 123
Msa0180380 AT4G21230.1 36.986 219 119 7 37 250 37 241 5.27e-32 124
Msa0180380 AT4G23180.2 36.325 234 134 8 21 250 31 253 6.36e-32 123
Msa0180380 AT4G23180.1 36.325 234 134 8 21 250 31 253 1.03e-31 123
Msa0180380 AT4G23280.3 37.089 213 122 5 41 250 39 242 1.42e-31 122
Msa0180380 AT4G23280.2 37.089 213 122 5 41 250 39 242 1.60e-31 122
Msa0180380 AT4G23280.1 37.089 213 122 5 41 250 39 242 1.61e-31 122
Msa0180380 AT4G23200.2 31.308 214 142 2 41 249 30 243 8.49e-31 119
Msa0180380 AT4G23200.1 31.308 214 142 2 41 249 30 243 1.95e-30 119
Msa0180380 AT4G21400.7 35.429 175 109 2 78 251 56 227 1.09e-29 117
Msa0180380 AT4G23150.1 36.449 214 125 7 41 250 39 245 1.76e-29 116
Msa0180380 AT4G00970.2 38.378 185 104 5 66 246 79 257 1.82e-29 116
Msa0180380 AT4G00970.1 38.378 185 104 5 66 246 79 257 2.75e-29 116
Msa0180380 AT4G23130.3 35.238 210 125 6 45 251 44 245 1.54e-27 110
Msa0180380 AT4G23130.1 35.238 210 125 6 45 251 44 245 1.83e-27 110
Msa0180380 AT4G23130.2 35.238 210 125 6 45 251 44 245 1.84e-27 110
Msa0180380 AT4G23250.3 29.915 234 142 5 32 250 30 256 5.71e-27 109
Msa0180380 AT4G23250.1 29.915 234 142 5 32 250 30 256 5.95e-27 109
Msa0180380 AT4G23250.2 29.915 234 142 5 32 250 30 256 6.35e-27 109
Msa0180380 AT4G23250.2 26.471 204 125 4 47 250 741 919 5.66e-15 74.7
Msa0180380 AT4G23140.2 34.722 216 126 7 41 250 40 246 9.73e-27 108
Msa0180380 AT4G23140.1 34.722 216 126 7 41 250 40 246 1.10e-26 108
Msa0180380 AT4G23230.1 35.047 214 126 7 41 250 37 241 2.67e-26 107
Msa0180380 AT3G45860.1 35.648 216 122 6 41 250 43 247 7.58e-26 106
Msa0180380 AT4G11460.1 29.545 220 145 4 39 249 32 250 5.41e-25 103
Msa0180380 AT4G11460.3 29.545 220 145 4 39 249 32 250 5.83e-25 103
Msa0180380 AT4G23210.1 29.084 251 156 6 12 249 9 250 8.48e-25 103
Msa0180380 AT4G20640.1 30.980 255 162 7 5 251 7 255 8.87e-25 99.4
Msa0180380 AT4G20630.1 30.980 255 162 7 5 251 7 255 8.87e-25 99.4
Msa0180380 AT4G20580.1 30.980 255 162 7 5 251 7 255 8.87e-25 99.4
Msa0180380 AT4G20600.1 30.980 255 162 7 5 251 7 255 8.87e-25 99.4
Msa0180380 AT4G20620.1 30.980 255 162 7 5 251 7 255 8.87e-25 99.4
Msa0180380 AT4G20610.1 30.980 255 162 7 5 251 7 255 8.87e-25 99.4
Msa0180380 AT4G20590.1 30.980 255 162 7 5 251 7 255 8.87e-25 99.4
Msa0180380 AT4G20670.1 30.980 255 162 7 5 251 7 255 1.07e-24 99.4
Msa0180380 AT4G23210.2 29.084 251 156 6 12 249 9 250 1.13e-24 102
Msa0180380 AT4G23210.4 29.084 251 156 6 12 249 9 250 1.13e-24 102
Msa0180380 AT4G20570.1 30.980 255 162 7 5 251 21 269 1.20e-24 99.4
Msa0180380 AT4G20560.1 30.980 255 162 7 5 251 21 269 1.20e-24 99.4
Msa0180380 AT4G20540.1 30.980 255 162 7 5 251 21 269 1.20e-24 99.4
Msa0180380 AT4G20645.1 30.980 255 162 7 5 251 21 269 1.20e-24 99.4
Msa0180380 AT4G20530.1 30.980 255 162 7 5 251 21 269 1.20e-24 99.4
Msa0180380 AT4G20550.1 30.980 255 162 7 5 251 21 269 1.20e-24 99.4
Msa0180380 AT4G23210.5 29.084 251 156 6 12 249 9 250 1.24e-24 102
Msa0180380 AT4G23270.2 32.245 245 152 7 10 250 6 240 1.30e-24 102
Msa0180380 AT4G23270.1 32.245 245 152 7 10 250 6 240 1.30e-24 102
Msa0180380 AT4G23210.3 29.084 251 156 6 12 249 9 250 1.30e-24 102
Msa0180380 AT4G23270.3 32.245 245 152 7 10 250 6 240 1.34e-24 102
Msa0180380 AT4G23310.2 34.762 210 123 7 45 250 156 355 2.05e-24 102
Msa0180380 AT4G11530.1 27.727 220 147 3 39 249 30 246 2.07e-24 102
Msa0180380 AT4G23310.1 34.762 210 123 7 45 250 156 355 2.18e-24 102
Msa0180380 AT4G23300.1 28.761 226 143 4 37 249 30 250 4.02e-24 101
Msa0180380 AT5G48540.1 28.689 244 159 6 11 250 9 241 4.83e-24 97.4
Msa0180380 AT4G23240.1 30.918 207 138 3 47 250 41 245 7.00e-24 100
Msa0180380 AT3G21990.1 30.612 245 157 6 13 251 18 255 8.21e-24 96.7
Msa0180380 AT3G58310.1 28.807 243 159 6 15 252 23 256 1.80e-23 95.9
Msa0180380 AT4G23190.1 28.959 221 147 4 37 249 30 248 2.12e-23 99.4
Msa0180380 AT4G23190.2 28.959 221 147 4 37 249 30 248 2.19e-23 99.0
Msa0180380 AT2G31620.1 29.358 218 145 4 36 249 40 252 3.66e-23 95.1
Msa0180380 AT4G11521.1 27.193 228 158 3 27 249 17 241 6.73e-23 94.7
Msa0180380 AT4G04500.2 28.910 211 135 5 55 252 47 255 3.39e-21 92.4
Msa0180380 AT4G04500.3 28.910 211 135 5 55 252 47 255 3.39e-21 92.4
Msa0180380 AT4G04500.1 28.910 211 135 5 55 252 47 255 4.10e-21 92.4
Msa0180380 AT4G11490.1 27.064 218 149 2 10 222 8 220 8.39e-21 91.7
Msa0180380 AT3G21960.1 29.730 222 144 5 36 251 46 261 1.06e-20 88.6
Msa0180380 AT1G61750.1 29.224 219 148 4 29 245 28 241 1.33e-20 89.7
Msa0180380 AT4G21410.1 41.732 127 71 2 127 251 1 126 2.80e-20 90.1
Msa0180380 AT4G21400.8 38.095 126 77 1 127 251 1 126 6.53e-20 89.0
Msa0180380 AT4G23260.2 26.009 223 158 3 32 249 30 250 7.08e-20 89.0
Msa0180380 AT4G23260.1 26.009 223 158 3 32 249 30 250 8.29e-20 88.6
Msa0180380 AT3G21910.1 28.514 249 159 9 13 249 24 265 3.22e-19 84.7
Msa0180380 AT3G21940.2 34.973 183 96 6 88 252 3 180 1.07e-18 81.3
Msa0180380 AT4G11480.2 22.115 208 154 3 45 249 36 238 2.88e-18 84.0
Msa0180380 AT4G04570.2 28.972 214 142 5 45 250 40 251 3.37e-18 84.0
Msa0180380 AT4G04570.1 28.972 214 142 5 45 250 40 251 3.47e-18 84.0
Msa0180380 AT4G23290.2 28.507 221 144 7 38 249 31 246 3.57e-18 84.0
Msa0180380 AT4G11480.3 22.222 207 153 3 46 249 37 238 3.99e-18 84.0
Msa0180380 AT4G11480.4 22.222 207 153 3 46 249 37 238 4.06e-18 84.0
Msa0180380 AT4G11480.1 22.222 207 153 3 46 249 37 238 4.66e-18 83.6
Msa0180380 AT3G21940.1 32.636 239 125 11 36 252 51 275 5.13e-18 81.6
Msa0180380 AT5G41290.1 28.230 209 140 7 43 247 42 244 6.14e-18 81.6
Msa0180380 AT4G11460.2 30.114 176 113 4 83 249 1 175 7.82e-18 82.8
Msa0180380 AT3G21920.1 28.516 256 152 10 13 249 24 267 1.21e-17 80.5
Msa0180380 AT3G21920.2 28.516 256 152 10 13 249 46 289 1.42e-17 80.5
Msa0180380 AT1G70690.1 26.190 252 159 10 1 245 2 233 2.01e-17 80.1
Msa0180380 AT1G63600.1 28.272 191 115 4 67 245 72 252 2.99e-17 80.1
Msa0180380 AT3G21930.1 28.125 256 153 10 13 249 24 267 4.78e-17 79.0
Msa0180380 AT4G23190.3 28.488 172 114 3 85 249 1 170 7.57e-17 80.1
Msa0180380 AT4G23190.4 28.488 172 114 3 85 249 1 170 7.57e-17 80.1
Msa0180380 AT3G29040.1 29.435 248 157 8 12 249 13 252 7.73e-17 77.8
Msa0180380 AT1G63550.1 24.255 235 145 5 26 246 30 245 1.41e-16 78.2
Msa0180380 AT3G22010.1 28.261 230 136 9 38 252 48 263 1.50e-16 77.4
Msa0180380 AT4G04540.3 24.889 225 154 6 39 250 32 254 4.51e-16 77.8
Msa0180380 AT4G04540.4 24.889 225 154 6 39 250 32 254 4.98e-16 77.8
Msa0180380 AT4G04540.1 24.889 225 154 6 39 250 32 254 5.72e-16 77.4
Msa0180380 AT4G04540.2 24.889 225 154 6 39 250 32 254 5.73e-16 77.4
Msa0180380 AT3G22040.1 27.734 256 156 10 12 252 16 257 5.88e-16 75.5
Msa0180380 AT1G63570.3 26.984 189 117 3 68 246 64 241 6.80e-16 75.9
Msa0180380 AT1G63570.1 26.984 189 117 3 68 246 64 241 6.80e-16 75.9
Msa0180380 AT4G11470.1 26.291 213 144 6 47 250 38 246 6.93e-16 77.4
Msa0180380 AT4G11470.2 26.291 213 144 6 47 250 43 251 7.63e-16 77.0
Msa0180380 AT1G63570.2 26.984 189 117 3 68 246 117 294 9.12e-16 75.9
Msa0180380 AT4G04490.1 28.017 232 144 9 29 249 27 246 2.64e-15 75.5
Msa0180380 AT4G04510.1 26.244 221 146 4 41 250 34 248 2.66e-15 75.5
Msa0180380 AT4G04510.2 26.244 221 146 4 41 250 36 250 2.71e-15 75.5
Msa0180380 AT3G22050.1 29.293 198 110 7 67 249 73 255 5.20e-15 72.8
Msa0180380 AT4G20680.1 28.444 225 144 8 39 252 49 267 6.17e-15 72.8
Msa0180380 AT5G41280.1 26.230 183 126 4 68 246 67 244 8.15e-15 72.8
Msa0180380 AT3G21970.1 28.175 252 158 10 12 249 19 261 1.43e-14 71.6
Msa0180380 AT3G29050.2 26.437 261 159 9 13 249 22 273 2.02e-14 71.6
Msa0180380 AT3G22000.1 28.696 230 137 10 39 252 49 267 3.00e-14 70.9
Msa0180380 AT5G41300.1 25.514 243 161 7 10 244 15 245 7.57e-14 70.1
Msa0180380 AT2G01660.2 26.744 258 151 11 1 247 2 232 9.53e-14 69.3
Msa0180380 AT2G01660.1 26.744 258 151 11 1 247 2 232 1.40e-13 69.3
Msa0180380 AT2G01660.3 26.744 258 151 11 1 247 2 232 1.47e-13 69.3
Msa0180380 AT1G63590.1 26.000 200 125 6 59 245 55 244 2.73e-13 68.2
Msa0180380 AT3G21900.2 25.822 213 148 5 37 249 45 247 3.85e-13 67.8
Msa0180380 AT1G63580.1 24.528 212 138 4 46 245 36 237 5.11e-13 67.4

Find 39 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTGTTGGTACAATATTT+TGG 0.104488 1_4:+68207703 None:intergenic
TATTCAGACCGTTCGATATT+AGG 0.205684 1_4:-68207985 Msa0180380:CDS
TGCTTTAGGTTTGATAGAAT+TGG 0.336798 1_4:+68207632 None:intergenic
GGTTTACTTTGTCCTCGTTT+TGG 0.340580 1_4:+68208151 None:intergenic
AGACATTTGCGACAATCTTC+AGG 0.362672 1_4:+68208099 None:intergenic
GGTTTCTACAATACAAATTA+CGG 0.363088 1_4:-68208174 Msa0180380:CDS
ATGAGAAGTAGGAAGGAATA+TGG 0.365268 1_4:+68208351 None:intergenic
AGTAGTGATCAAACAATATA+TGG 0.388142 1_4:-68207799 Msa0180380:CDS
TGGACATGCTTGTGTTAGAT+AGG 0.389375 1_4:+68208062 None:intergenic
AAATATTGTACCAACAAGAT+TGG 0.404642 1_4:-68207700 Msa0180380:CDS
AATTCTACAACCAATCTTGT+TGG 0.410248 1_4:+68207690 None:intergenic
TTAGAGCAAGCTGTTATTTG+AGG 0.415196 1_4:-68207666 Msa0180380:CDS
AAATGTGGCCTGCTATAATT+TGG 0.425646 1_4:-68207954 Msa0180380:CDS
ACAGTGTACACCTGATTTGT+CGG 0.437811 1_4:-68207770 Msa0180380:CDS
CCAAACAGAAAAGAAGCAAT+TGG 0.439075 1_4:-68208042 Msa0180380:CDS
CGTTTACTTTAGATGTGAAA+AGG 0.440701 1_4:+68208325 None:intergenic
TGAAAAGGATTATGAGAAGT+AGG 0.452218 1_4:+68208340 None:intergenic
CACTGTGAAACCGACAAATC+AGG 0.458317 1_4:+68207760 None:intergenic
GAATGTGAACAATGCAACTT+TGG 0.483957 1_4:-68207929 Msa0180380:CDS
TATATTGTTTGATCACTACT+AGG 0.502209 1_4:+68207802 None:intergenic
GAGGACAAAGTAAACCTCAT+TGG 0.502261 1_4:-68208144 Msa0180380:CDS
TATGCTGCAGGAACTTTGCC+AGG 0.503711 1_4:-68207826 Msa0180380:CDS
TTCAACTCAAAAGTTAACTA+CGG 0.507432 1_4:-68208195 Msa0180380:CDS
AAGGATTATGAGAAGTAGGA+AGG 0.514600 1_4:+68208344 None:intergenic
GATAGAGGCGACTACATAAC+CGG 0.514752 1_4:-68208264 Msa0180380:CDS
GTTGTTATGGTAGGTACTAC+CGG 0.518720 1_4:+68208245 None:intergenic
ACATTCCACCAAATTATAGC+AGG 0.535057 1_4:+68207946 None:intergenic
TCACATCGTAAGTATGCTGC+AGG 0.560986 1_4:-68207838 Msa0180380:CDS
TGTGGCCTGCTATAATTTGG+TGG 0.578852 1_4:-68207951 Msa0180380:CDS
GGCAGATCAATTCAATAGTG+TGG 0.581827 1_4:-68207908 Msa0180380:CDS
CTCCTCTACATATTCCAATG+AGG 0.587463 1_4:+68208130 None:intergenic
CGCTGAGGCCTAATATCGAA+CGG 0.598988 1_4:+68207977 None:intergenic
AACCTCATTGGAATATGTAG+AGG 0.614721 1_4:-68208132 Msa0180380:CDS
ACAGAAAAGAAGCAATTGGA+TGG 0.618085 1_4:-68208038 Msa0180380:CDS
GTTTGATCACTACTAGGACC+TGG 0.622316 1_4:+68207808 None:intergenic
TATTAGGCCTCAGCGAAATG+TGG 0.638853 1_4:-68207969 Msa0180380:CDS
TACAAATTACGGCCAAAACG+AGG 0.648241 1_4:-68208163 Msa0180380:CDS
AGAAGCAATTGGATGGTACG+AGG 0.694836 1_4:-68208031 Msa0180380:CDS
TAGCAGGCCACATTTCGCTG+AGG 0.701616 1_4:+68207962 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTATTTTTGTCACATAAAT+AGG + chr1_4:68207724-68207743 None:intergenic 20.0%
!! GTTGAATGATTTAAAAAACA+AGG - chr1_4:68208133-68208152 Msa0180380:CDS 20.0%
!!! GTTATTTTTGTCACATAAAT+AGG + chr1_4:68207724-68207743 None:intergenic 20.0%
!! GTTGAATGATTTAAAAAACA+AGG - chr1_4:68208133-68208152 Msa0180380:CDS 20.0%
! TTCAACTCAAAAGTTAACTA+CGG - chr1_4:68207813-68207832 Msa0180380:CDS 25.0%
! GGTTTCTACAATACAAATTA+CGG - chr1_4:68207834-68207853 Msa0180380:CDS 25.0%
! TTAAAAAACAAGGCTAGAAA+TGG - chr1_4:68208143-68208162 Msa0180380:CDS 25.0%
! TATATTGTTTGATCACTACT+AGG + chr1_4:68208209-68208228 None:intergenic 25.0%
! AGTAGTGATCAAACAATATA+TGG - chr1_4:68208209-68208228 Msa0180380:CDS 25.0%
!! TCTTGTTGGTACAATATTTT+GGG + chr1_4:68208307-68208326 None:intergenic 25.0%
!! ATCTTGTTGGTACAATATTT+TGG + chr1_4:68208308-68208327 None:intergenic 25.0%
! AAATATTGTACCAACAAGAT+TGG - chr1_4:68208308-68208327 Msa0180380:CDS 25.0%
! TTCAACTCAAAAGTTAACTA+CGG - chr1_4:68207813-68207832 Msa0180380:CDS 25.0%
! GGTTTCTACAATACAAATTA+CGG - chr1_4:68207834-68207853 Msa0180380:CDS 25.0%
! TTAAAAAACAAGGCTAGAAA+TGG - chr1_4:68208143-68208162 Msa0180380:CDS 25.0%
! TATATTGTTTGATCACTACT+AGG + chr1_4:68208209-68208228 None:intergenic 25.0%
! AGTAGTGATCAAACAATATA+TGG - chr1_4:68208209-68208228 Msa0180380:CDS 25.0%
!! TCTTGTTGGTACAATATTTT+GGG + chr1_4:68208307-68208326 None:intergenic 25.0%
!! ATCTTGTTGGTACAATATTT+TGG + chr1_4:68208308-68208327 None:intergenic 25.0%
! AAATATTGTACCAACAAGAT+TGG - chr1_4:68208308-68208327 Msa0180380:CDS 25.0%
TGAAAAGGATTATGAGAAGT+AGG + chr1_4:68207671-68207690 None:intergenic 30.0%
CGTTTACTTTAGATGTGAAA+AGG + chr1_4:68207686-68207705 None:intergenic 30.0%
TGTGACAAAAATAACGATAG+AGG - chr1_4:68207729-68207748 Msa0180380:CDS 30.0%
!!! TAACTTTTGAGTTGAAAGTG+AGG + chr1_4:68207809-68207828 None:intergenic 30.0%
AATTCTACAACCAATCTTGT+TGG + chr1_4:68208321-68208340 None:intergenic 30.0%
TGAAAAGGATTATGAGAAGT+AGG + chr1_4:68207671-68207690 None:intergenic 30.0%
CGTTTACTTTAGATGTGAAA+AGG + chr1_4:68207686-68207705 None:intergenic 30.0%
TGTGACAAAAATAACGATAG+AGG - chr1_4:68207729-68207748 Msa0180380:CDS 30.0%
!!! TAACTTTTGAGTTGAAAGTG+AGG + chr1_4:68207809-68207828 None:intergenic 30.0%
AATTCTACAACCAATCTTGT+TGG + chr1_4:68208321-68208340 None:intergenic 30.0%
ATGAGAAGTAGGAAGGAATA+TGG + chr1_4:68207660-68207679 None:intergenic 35.0%
AAGGATTATGAGAAGTAGGA+AGG + chr1_4:68207667-68207686 None:intergenic 35.0%
!!! GATTTTGAGGTTGTTATGGT+AGG + chr1_4:68207775-68207794 None:intergenic 35.0%
!!! AAGCGATTTTGAGGTTGTTA+TGG + chr1_4:68207779-68207798 None:intergenic 35.0%
! GGTATATGAAAGCGATTTTG+AGG + chr1_4:68207788-68207807 None:intergenic 35.0%
AACCTCATTGGAATATGTAG+AGG - chr1_4:68207876-68207895 Msa0180380:CDS 35.0%
! CCAATTGCTTCTTTTCTGTT+TGG + chr1_4:68207969-68207988 None:intergenic 35.0%
CCAAACAGAAAAGAAGCAAT+TGG - chr1_4:68207966-68207985 Msa0180380:CDS 35.0%
ACAGAAAAGAAGCAATTGGA+TGG - chr1_4:68207970-68207989 Msa0180380:CDS 35.0%
TATTCAGACCGTTCGATATT+AGG - chr1_4:68208023-68208042 Msa0180380:CDS 35.0%
AAATGTGGCCTGCTATAATT+TGG - chr1_4:68208054-68208073 Msa0180380:CDS 35.0%
ACATTCCACCAAATTATAGC+AGG + chr1_4:68208065-68208084 None:intergenic 35.0%
GAATGTGAACAATGCAACTT+TGG - chr1_4:68208079-68208098 Msa0180380:CDS 35.0%
! TTAGAGCAAGCTGTTATTTG+AGG - chr1_4:68208342-68208361 Msa0180380:CDS 35.0%
ATGAGAAGTAGGAAGGAATA+TGG + chr1_4:68207660-68207679 None:intergenic 35.0%
AAGGATTATGAGAAGTAGGA+AGG + chr1_4:68207667-68207686 None:intergenic 35.0%
!!! GATTTTGAGGTTGTTATGGT+AGG + chr1_4:68207775-68207794 None:intergenic 35.0%
!!! AAGCGATTTTGAGGTTGTTA+TGG + chr1_4:68207779-68207798 None:intergenic 35.0%
! GGTATATGAAAGCGATTTTG+AGG + chr1_4:68207788-68207807 None:intergenic 35.0%
AACCTCATTGGAATATGTAG+AGG - chr1_4:68207876-68207895 Msa0180380:CDS 35.0%
! CCAATTGCTTCTTTTCTGTT+TGG + chr1_4:68207969-68207988 None:intergenic 35.0%
CCAAACAGAAAAGAAGCAAT+TGG - chr1_4:68207966-68207985 Msa0180380:CDS 35.0%
ACAGAAAAGAAGCAATTGGA+TGG - chr1_4:68207970-68207989 Msa0180380:CDS 35.0%
TATTCAGACCGTTCGATATT+AGG - chr1_4:68208023-68208042 Msa0180380:CDS 35.0%
AAATGTGGCCTGCTATAATT+TGG - chr1_4:68208054-68208073 Msa0180380:CDS 35.0%
ACATTCCACCAAATTATAGC+AGG + chr1_4:68208065-68208084 None:intergenic 35.0%
GAATGTGAACAATGCAACTT+TGG - chr1_4:68208079-68208098 Msa0180380:CDS 35.0%
! TTAGAGCAAGCTGTTATTTG+AGG - chr1_4:68208342-68208361 Msa0180380:CDS 35.0%
GTTGTTATGGTAGGTACTAC+CGG + chr1_4:68207766-68207785 None:intergenic 40.0%
TACAAATTACGGCCAAAACG+AGG - chr1_4:68207845-68207864 Msa0180380:CDS 40.0%
! GGTTTACTTTGTCCTCGTTT+TGG + chr1_4:68207860-68207879 None:intergenic 40.0%
GAGGACAAAGTAAACCTCAT+TGG - chr1_4:68207864-68207883 Msa0180380:CDS 40.0%
CTCCTCTACATATTCCAATG+AGG + chr1_4:68207881-68207900 None:intergenic 40.0%
AGACATTTGCGACAATCTTC+AGG + chr1_4:68207912-68207931 None:intergenic 40.0%
TGGACATGCTTGTGTTAGAT+AGG + chr1_4:68207949-68207968 None:intergenic 40.0%
GGCAGATCAATTCAATAGTG+TGG - chr1_4:68208100-68208119 Msa0180380:CDS 40.0%
! ACAGTGTACACCTGATTTGT+CGG - chr1_4:68208238-68208257 Msa0180380:CDS 40.0%
GTTGTTATGGTAGGTACTAC+CGG + chr1_4:68207766-68207785 None:intergenic 40.0%
TACAAATTACGGCCAAAACG+AGG - chr1_4:68207845-68207864 Msa0180380:CDS 40.0%
! GGTTTACTTTGTCCTCGTTT+TGG + chr1_4:68207860-68207879 None:intergenic 40.0%
GAGGACAAAGTAAACCTCAT+TGG - chr1_4:68207864-68207883 Msa0180380:CDS 40.0%
CTCCTCTACATATTCCAATG+AGG + chr1_4:68207881-68207900 None:intergenic 40.0%
AGACATTTGCGACAATCTTC+AGG + chr1_4:68207912-68207931 None:intergenic 40.0%
TGGACATGCTTGTGTTAGAT+AGG + chr1_4:68207949-68207968 None:intergenic 40.0%
GGCAGATCAATTCAATAGTG+TGG - chr1_4:68208100-68208119 Msa0180380:CDS 40.0%
! ACAGTGTACACCTGATTTGT+CGG - chr1_4:68208238-68208257 Msa0180380:CDS 40.0%
GATAGAGGCGACTACATAAC+CGG - chr1_4:68207744-68207763 Msa0180380:CDS 45.0%
AGAAGCAATTGGATGGTACG+AGG - chr1_4:68207977-68207996 Msa0180380:CDS 45.0%
TATTAGGCCTCAGCGAAATG+TGG - chr1_4:68208039-68208058 Msa0180380:CDS 45.0%
TGTGGCCTGCTATAATTTGG+TGG - chr1_4:68208057-68208076 Msa0180380:CDS 45.0%
TCACATCGTAAGTATGCTGC+AGG - chr1_4:68208170-68208189 Msa0180380:CDS 45.0%
GTTTGATCACTACTAGGACC+TGG + chr1_4:68208203-68208222 None:intergenic 45.0%
CACTGTGAAACCGACAAATC+AGG + chr1_4:68208251-68208270 None:intergenic 45.0%
GATAGAGGCGACTACATAAC+CGG - chr1_4:68207744-68207763 Msa0180380:CDS 45.0%
AGAAGCAATTGGATGGTACG+AGG - chr1_4:68207977-68207996 Msa0180380:CDS 45.0%
TATTAGGCCTCAGCGAAATG+TGG - chr1_4:68208039-68208058 Msa0180380:CDS 45.0%
TGTGGCCTGCTATAATTTGG+TGG - chr1_4:68208057-68208076 Msa0180380:CDS 45.0%
TCACATCGTAAGTATGCTGC+AGG - chr1_4:68208170-68208189 Msa0180380:CDS 45.0%
GTTTGATCACTACTAGGACC+TGG + chr1_4:68208203-68208222 None:intergenic 45.0%
CACTGTGAAACCGACAAATC+AGG + chr1_4:68208251-68208270 None:intergenic 45.0%
CGCTGAGGCCTAATATCGAA+CGG + chr1_4:68208034-68208053 None:intergenic 50.0%
TATGCTGCAGGAACTTTGCC+AGG - chr1_4:68208182-68208201 Msa0180380:CDS 50.0%
CGCTGAGGCCTAATATCGAA+CGG + chr1_4:68208034-68208053 None:intergenic 50.0%
TATGCTGCAGGAACTTTGCC+AGG - chr1_4:68208182-68208201 Msa0180380:CDS 50.0%
TAGCAGGCCACATTTCGCTG+AGG + chr1_4:68208049-68208068 None:intergenic 55.0%
TAGCAGGCCACATTTCGCTG+AGG + chr1_4:68208049-68208068 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 68207636 68208394 68207636 ID=Msa0180380;Name=Msa0180380
chr1_4 mRNA 68207636 68208394 68207636 ID=Msa0180380-mRNA-1;Parent=Msa0180380;Name=Msa0180380-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|-1|0|1|-1|1|1|0|252
chr1_4 exon 68207636 68208394 68207636 ID=Msa0180380-mRNA-1:exon:22552;Parent=Msa0180380-mRNA-1
chr1_4 CDS 68207636 68208394 68207636 ID=Msa0180380-mRNA-1:cds;Parent=Msa0180380-mRNA-1
Gene Sequence

>Msa0180380

ATGGCTACTATTTCTGTAAGTCCATATTCCTTCCTACTTCTCATAATCCTTTTCACATCTAAAGTAAACGCAGATGACAATTTTACCTATTTATGTGACAAAAATAACGATAGAGGCGACTACATAACCGGTAGTACCTACCATAACAACCTCAAAATCGCTTTCATATACCTCACTTTCAACTCAAAAGTTAACTACGGTTTCTACAATACAAATTACGGCCAAAACGAGGACAAAGTAAACCTCATTGGAATATGTAGAGGAGACATTAATCCTGAAGATTGTCGCAAATGTCTCGTTAGTTCAAAATCCTATCTAACACAAGCATGTCCAAACAGAAAAGAAGCAATTGGATGGTACGAGGCTGATCAGAAATGCATGTTGCGTTATTCAGACCGTTCGATATTAGGCCTCAGCGAAATGTGGCCTGCTATAATTTGGTGGAATGTGAACAATGCAACTTTGGCAGATCAATTCAATAGTGTGGTGAAACAATTGTTGAATGATTTAAAAAACAAGGCTAGAAATGGTGACTCACATCGTAAGTATGCTGCAGGAACTTTGCCAGGTCCTAGTAGTGATCAAACAATATATGGTCTTGTACAGTGTACACCTGATTTGTCGGTTTCACAGTGTGATGACTGTTTGAATGAATCTATTGCTGAAGTCCCAAAATATTGTACCAACAAGATTGGTTGTAGAATTTTTAGAGCAAGCTGTTATTTGAGGTTTGAAACTCACCAATTCTATCAAACCTAA

Protein sequence

>Msa0180380

MATISVSPYSFLLLIILFTSKVNADDNFTYLCDKNNDRGDYITGSTYHNNLKIAFIYLTFNSKVNYGFYNTNYGQNEDKVNLIGICRGDINPEDCRKCLVSSKSYLTQACPNRKEAIGWYEADQKCMLRYSDRSILGLSEMWPAIIWWNVNNATLADQFNSVVKQLLNDLKNKARNGDSHRKYAAGTLPGPSSDQTIYGLVQCTPDLSVSQCDDCLNESIAEVPKYCTNKIGCRIFRASCYLRFETHQFYQT*