Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870170 | XP_003618349.1 | 91.265 | 332 | 29 | 0 | 1 | 332 | 1 | 332 | 0.0 | 623 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870170 | sp|P29136|MEP1_SOYBN | 40.636 | 283 | 136 | 6 | 50 | 329 | 48 | 301 | 4.45e-63 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870170 | G7KJD9 | 91.265 | 332 | 29 | 0 | 1 | 332 | 1 | 332 | 0.0 | 623 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016080 | Msa0870170 | 0.802009 | 6.875032e-49 | -8.615850e-47 |
| Msa0024650 | Msa0870170 | 0.813626 | 2.327273e-51 | -8.615850e-47 |
| Msa0036550 | Msa0870170 | 0.808025 | 3.793316e-50 | -8.615850e-47 |
| Msa0060410 | Msa0870170 | 0.812041 | 5.175818e-51 | -8.615850e-47 |
| Msa0612660 | Msa0870170 | 0.811022 | 8.618712e-51 | -8.615850e-47 |
| Msa0758990 | Msa0870170 | 0.804812 | 1.805190e-49 | -8.615850e-47 |
| Msa0800120 | Msa0870170 | 0.824988 | 5.987756e-54 | -8.615850e-47 |
| Msa0800150 | Msa0870170 | 0.810021 | 1.417979e-50 | -8.615850e-47 |
| Msa0163690 | Msa0870170 | 0.805968 | 1.033259e-49 | -8.615850e-47 |
| Msa0180380 | Msa0870170 | 0.808573 | 2.898403e-50 | -8.615850e-47 |
| Msa0202650 | Msa0870170 | 0.809436 | 1.893913e-50 | -8.615850e-47 |
| Msa0219060 | Msa0870170 | 0.804899 | 1.731224e-49 | -8.615850e-47 |
| Msa0471070 | Msa0870170 | 0.804586 | 2.012229e-49 | -8.615850e-47 |
| Msa0245660 | Msa0870170 | 0.834389 | 3.083387e-56 | -8.615850e-47 |
| Msa0322460 | Msa0870170 | 0.815276 | 1.004495e-51 | -8.615850e-47 |
| Msa0545680 | Msa0870170 | 0.800698 | 1.275345e-48 | -8.615850e-47 |
| Msa0870170 | Msa0903420 | 0.919403 | 4.703337e-87 | -8.615850e-47 |
| Msa0870170 | Msa0935870 | 0.913462 | 5.985305e-84 | -8.615850e-47 |
| Msa0870170 | Msa0972880 | 0.916160 | 2.486309e-85 | -8.615850e-47 |
| Msa0870170 | Msa1047300 | 0.805755 | 1.145182e-49 | -8.615850e-47 |
| Msa0870170 | Msa1047340 | 0.804990 | 1.656379e-49 | -8.615850e-47 |
| Msa0870170 | Msa1090990 | 0.803978 | 2.692959e-49 | -8.615850e-47 |
| Msa0870170 | Msa1104130 | 0.800683 | 1.284466e-48 | -8.615850e-47 |
| Msa0870170 | Msa1133850 | 0.801184 | 1.014879e-48 | -8.615850e-47 |
| Msa0870170 | Msa1268360 | 0.821321 | 4.296180e-53 | -8.615850e-47 |
| Msa0870170 | Msa1395720 | 0.811698 | 6.146590e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870170 | MtrunA17_Chr6g0451671 | 91.265 | 332 | 29 | 0 | 1 | 332 | 1 | 332 | 0.0 | 623 |
| Msa0870170 | MtrunA17_Chr5g0414891 | 36.455 | 299 | 153 | 6 | 42 | 329 | 53 | 325 | 6.07e-58 | 191 |
| Msa0870170 | MtrunA17_Chr8g0334661 | 38.255 | 298 | 147 | 7 | 41 | 329 | 37 | 306 | 3.14e-55 | 184 |
| Msa0870170 | MtrunA17_Chr8g0364281 | 34.870 | 347 | 172 | 9 | 6 | 329 | 47 | 362 | 4.71e-53 | 179 |
| Msa0870170 | MtrunA17_Chr5g0399301 | 36.207 | 290 | 147 | 9 | 47 | 329 | 54 | 312 | 5.28e-51 | 172 |
| Msa0870170 | MtrunA17_Chr5g0414641 | 31.507 | 292 | 152 | 10 | 46 | 329 | 67 | 318 | 1.71e-35 | 131 |
| Msa0870170 | MtrunA17_Chr5g0414771 | 29.545 | 264 | 140 | 9 | 53 | 308 | 3 | 228 | 1.77e-25 | 103 |
| Msa0870170 | MtrunA17_Chr5g0414657 | 27.586 | 290 | 175 | 9 | 48 | 333 | 55 | 313 | 2.37e-23 | 99.0 |
| Msa0870170 | MtrunA17_Chr5g0414654 | 27.389 | 314 | 155 | 10 | 3 | 308 | 1 | 249 | 1.89e-21 | 93.2 |
| Msa0870170 | MtrunA17_Chr5g0414661 | 26.224 | 286 | 162 | 11 | 57 | 329 | 35 | 284 | 4.94e-20 | 89.0 |
| Msa0870170 | MtrunA17_Chr5g0414791 | 27.703 | 296 | 150 | 13 | 30 | 308 | 57 | 305 | 2.67e-18 | 84.7 |
| Msa0870170 | MtrunA17_Chr5g0414821 | 25.776 | 322 | 163 | 13 | 39 | 329 | 96 | 372 | 1.43e-16 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870170 | AT1G59970.1 | 37.162 | 296 | 156 | 6 | 39 | 329 | 43 | 313 | 4.92e-60 | 196 |
| Msa0870170 | AT4G16640.1 | 36.232 | 345 | 177 | 8 | 1 | 329 | 1 | 318 | 8.08e-57 | 188 |
| Msa0870170 | AT1G24140.1 | 33.807 | 352 | 182 | 11 | 5 | 329 | 1 | 328 | 1.04e-53 | 181 |
| Msa0870170 | AT1G70170.1 | 34.694 | 343 | 172 | 9 | 12 | 329 | 8 | 323 | 2.25e-53 | 180 |
| Msa0870170 | AT2G45040.1 | 37.634 | 279 | 136 | 7 | 56 | 329 | 50 | 295 | 4.23e-47 | 162 |
Find 83 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCATCATGTTGAACATTT+AGG | 0.265192 | 6_1:+4463667 | None:intergenic |
| GGTCTTCATGCTGGATTGTT+GGG | 0.280757 | 6_1:-4462155 | Msa0870170:CDS |
| CAAAAGGGACAAACACTAAA+AGG | 0.294871 | 6_1:-4463729 | Msa0870170:CDS |
| AAGTGGAGCCTTCCATCTTC+TGG | 0.306584 | 6_1:+4463177 | None:intergenic |
| TTTCTAAAAGGAGTAATAAA+AGG | 0.309742 | 6_1:+4463835 | None:intergenic |
| TACTGTGTCCAAGCCCTAAA+AGG | 0.314707 | 6_1:+4462048 | None:intergenic |
| TCTCCTTACACCTGCCCAAT+AGG | 0.318351 | 6_1:+4462001 | None:intergenic |
| TTGCCGTAGCCGTTGGTCTT+TGG | 0.323120 | 6_1:+4462114 | None:intergenic |
| AGGGATACATAGCTGCATTT+TGG | 0.323892 | 6_1:+4462021 | None:intergenic |
| ATGCAGCTATGTATCCCTAT+TGG | 0.324355 | 6_1:-4462016 | Msa0870170:CDS |
| TGACTATGTTTAGGCAAATC+AGG | 0.324771 | 6_1:+4463501 | None:intergenic |
| TACGGCAAAACAATTTGATT+TGG | 0.328072 | 6_1:-4462099 | Msa0870170:CDS |
| ATCTGTGGCTTTGCATGAAA+TGG | 0.342954 | 6_1:-4462075 | Msa0870170:CDS |
| TCTTCCAAGACTCACCAAAA+TGG | 0.357094 | 6_1:-4463440 | Msa0870170:CDS |
| CTTTGTTTGTGACTATGTTT+AGG | 0.357411 | 6_1:+4463492 | None:intergenic |
| ACTTTGATGGAGACGAAAAC+TGG | 0.368546 | 6_1:-4463158 | Msa0870170:CDS |
| CTTAAGACTTGTGGGATTGT+TGG | 0.378391 | 6_1:+4463134 | None:intergenic |
| CAAAATGGAGAGACTCAAAA+AGG | 0.380859 | 6_1:-4463425 | Msa0870170:CDS |
| TGGGAAATGGAATTTCTAAA+AGG | 0.381930 | 6_1:+4463823 | None:intergenic |
| ATTTCACATTCACGGAAGTT+GGG | 0.387217 | 6_1:-4463302 | Msa0870170:CDS |
| AGGTCTTCATGCTGGATTGT+TGG | 0.390597 | 6_1:-4462156 | Msa0870170:CDS |
| CTCCTTACACCTGCCCAATA+GGG | 0.395717 | 6_1:+4462002 | None:intergenic |
| GATGGAAGGCTCCACTTTGA+TGG | 0.398360 | 6_1:-4463171 | Msa0870170:CDS |
| TACCATCACCTACATGTAAC+TGG | 0.404024 | 6_1:-4463576 | Msa0870170:CDS |
| AAGTTATCCTTAAGACTTGT+GGG | 0.410453 | 6_1:+4463126 | None:intergenic |
| AAGTGTTGATGTGTTGAGTA+TGG | 0.416250 | 6_1:-4463379 | Msa0870170:CDS |
| CAACAATCCCACAAGTCTTA+AGG | 0.419763 | 6_1:-4463133 | Msa0870170:CDS |
| GATTTCACATTCACGGAAGT+TGG | 0.420328 | 6_1:-4463303 | Msa0870170:CDS |
| AAACCTCAAAGGTGTTCAAA+AGG | 0.423946 | 6_1:-4463745 | Msa0870170:CDS |
| TGCAGCTATGTATCCCTATT+GGG | 0.424514 | 6_1:-4462015 | Msa0870170:CDS |
| ACATTTCCTGGCCCATCAAA+AGG | 0.433183 | 6_1:+4463219 | None:intergenic |
| GTATGAGCTAGAACATTTCC+TGG | 0.435265 | 6_1:+4463207 | None:intergenic |
| ATTATTTCAGGTCTTCATGC+TGG | 0.444176 | 6_1:-4462164 | Msa0870170:intron |
| ATCCCTATTGGGCAGGTGTA+AGG | 0.446624 | 6_1:-4462004 | Msa0870170:CDS |
| ATGGTTCTTGACTCAACAAT+GGG | 0.446939 | 6_1:+4463804 | None:intergenic |
| CTTGACTCAACAATGGGAAA+TGG | 0.449294 | 6_1:+4463810 | None:intergenic |
| TGATTCCATCCACATCATCT+TGG | 0.462472 | 6_1:+4461970 | None:intergenic |
| AGTTAGTGATTTCACATTCA+CGG | 0.469287 | 6_1:-4463310 | Msa0870170:CDS |
| ACAAGTCTTAAGGATAACTT+TGG | 0.471399 | 6_1:-4463123 | Msa0870170:intron |
| CATACTTTCCCTCCAGAAGA+TGG | 0.473529 | 6_1:-4463189 | Msa0870170:CDS |
| ACAATTTGATTTGGAATCTG+TGG | 0.478019 | 6_1:-4462090 | Msa0870170:CDS |
| GTGAAATCCGATCACTATAT+CGG | 0.481999 | 6_1:+4463266 | None:intergenic |
| CGTAGCCGTTGGTCTTTGGA+AGG | 0.484074 | 6_1:+4462118 | None:intergenic |
| GTATGTTTGAAAATCTTTGA+GGG | 0.484231 | 6_1:+4463596 | None:intergenic |
| AGTTTGGATGAATGAATCCT+TGG | 0.493372 | 6_1:+4463773 | None:intergenic |
| GTCTTCATGCTGGATTGTTG+GGG | 0.519679 | 6_1:-4462154 | Msa0870170:CDS |
| AAGGAGTAATAAAAGGAAAG+AGG | 0.519969 | 6_1:+4463842 | None:intergenic |
| AACCTCAAAGGTGTTCAAAA+GGG | 0.530859 | 6_1:-4463744 | Msa0870170:CDS |
| GGTATGTTTGAAAATCTTTG+AGG | 0.532790 | 6_1:+4463595 | None:intergenic |
| AAAATGGTCATTTAGAGTAG+TGG | 0.537551 | 6_1:+4463638 | None:intergenic |
| GCTATGTATCCCTATTGGGC+AGG | 0.543151 | 6_1:-4462011 | Msa0870170:CDS |
| CAAACAAAGTGGTTTAGAGA+AGG | 0.546779 | 6_1:-4463478 | Msa0870170:CDS |
| TCTGTGGCTTTGCATGAAAT+GGG | 0.554545 | 6_1:-4462074 | Msa0870170:CDS |
| CATTTCCTGGCCCATCAAAA+GGG | 0.556591 | 6_1:+4463220 | None:intergenic |
| AGATGATGTGGATGGAATCA+TGG | 0.557045 | 6_1:-4461967 | Msa0870170:CDS |
| AAAGTTATCCTTAAGACTTG+TGG | 0.558696 | 6_1:+4463125 | None:intergenic |
| CAAACTCTTCAAAACCTCAA+AGG | 0.558738 | 6_1:-4463756 | Msa0870170:CDS |
| AAGAACCATAAAACCTTCCA+AGG | 0.561044 | 6_1:-4463790 | Msa0870170:CDS |
| CTAAACCAAGATGATGTGGA+TGG | 0.563005 | 6_1:-4461975 | Msa0870170:CDS |
| TGGATGAATGAATCCTTGGA+AGG | 0.563353 | 6_1:+4463777 | None:intergenic |
| TATGGTTCTTGACTCAACAA+TGG | 0.565742 | 6_1:+4463803 | None:intergenic |
| GACTATGTTTAGGCAAATCA+GGG | 0.568078 | 6_1:+4463502 | None:intergenic |
| TTTCACATTCACGGAAGTTG+GGG | 0.569728 | 6_1:-4463301 | Msa0870170:CDS |
| ATCTTGAGTCTTCCACGTTG+TGG | 0.572692 | 6_1:-4463528 | Msa0870170:CDS |
| CTTCCAAAGACCAACGGCTA+CGG | 0.579541 | 6_1:-4462117 | Msa0870170:CDS |
| AAATCTAAACCAAGATGATG+TGG | 0.581039 | 6_1:-4461979 | Msa0870170:CDS |
| TCATGCTGGATTGTTGGGGA+AGG | 0.584729 | 6_1:-4462150 | Msa0870170:CDS |
| TGGAGCCTTCCATCTTCTGG+AGG | 0.591987 | 6_1:+4463180 | None:intergenic |
| GGACAAACACTAAAAGGCAT+TGG | 0.594183 | 6_1:-4463723 | Msa0870170:CDS |
| GGATTTCACCATGGTGATCA+CGG | 0.597300 | 6_1:-4463252 | Msa0870170:CDS |
| TGGTCATTTAGAGTAGTGGA+AGG | 0.597345 | 6_1:+4463642 | None:intergenic |
| AAACATAGTCACAAACAAAG+TGG | 0.601641 | 6_1:-4463489 | Msa0870170:CDS |
| GTAGCCGTTGGTCTTTGGAA+GGG | 0.606243 | 6_1:+4462119 | None:intergenic |
| CTTTCCCTCCAGAAGATGGA+AGG | 0.609700 | 6_1:-4463185 | Msa0870170:CDS |
| AACTCGACCGATATAGTGAT+CGG | 0.611162 | 6_1:-4463273 | Msa0870170:CDS |
| GATCACTATATCGGTCGAGT+TGG | 0.619534 | 6_1:+4463275 | None:intergenic |
| GGAGCCTTCCATCTTCTGGA+GGG | 0.638922 | 6_1:+4463181 | None:intergenic |
| GACCAGTTACATGTAGGTGA+TGG | 0.653297 | 6_1:+4463574 | None:intergenic |
| TATTCCCTTCCAAAGACCAA+CGG | 0.657183 | 6_1:-4462123 | Msa0870170:CDS |
| AAATATCACCGTGATCACCA+TGG | 0.688526 | 6_1:+4463244 | None:intergenic |
| CTACACGACCAGTTACATGT+AGG | 0.697312 | 6_1:+4463568 | None:intergenic |
| ATAGTGATCGGATTTCACCA+TGG | 0.731745 | 6_1:-4463261 | Msa0870170:CDS |
| AAATCAGGGACACCACAACG+TGG | 0.781696 | 6_1:+4463516 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTATTAAAATTATAA+AGG | + | chr6_1:4462969-4462988 | None:intergenic | 0.0% |
| !!! | ATATTTTATTAAAATTATAA+AGG | + | chr6_1:4462969-4462988 | None:intergenic | 0.0% |
| !! | TTAAATTTGTATTATCATTA+TGG | + | chr6_1:4463244-4463263 | None:intergenic | 10.0% |
| !!! | AAATTTAATGTACAATTTTT+AGG | - | chr6_1:4463256-4463275 | Msa0870170:CDS | 10.0% |
| !!! | TATATTTTTAAAAAAAACTC+CGG | - | chr6_1:4463438-4463457 | Msa0870170:CDS | 10.0% |
| !!! | TATATTTTTAAAAAAAACTC+CGG | - | chr6_1:4463438-4463457 | Msa0870170:CDS | 10.0% |
| !! | TTAAATTTGTATTATCATTA+TGG | + | chr6_1:4463244-4463263 | None:intergenic | 10.0% |
| !!! | AAATTTAATGTACAATTTTT+AGG | - | chr6_1:4463256-4463275 | Msa0870170:CDS | 10.0% |
| !!! | TATATTTTTAAAAAAAACTC+CGG | - | chr6_1:4463438-4463457 | Msa0870170:CDS | 10.0% |
| !!! | TATATTTTTAAAAAAAACTC+CGG | - | chr6_1:4463438-4463457 | Msa0870170:CDS | 10.0% |
| !! | AAAAATTACCTTAAAAGATT+TGG | - | chr6_1:4462121-4462140 | Msa0870170:CDS | 15.0% |
| !! | CTTTATCATCTAATAAAAAA+AGG | - | chr6_1:4462818-4462837 | Msa0870170:intron | 15.0% |
| !! | ATTATGTATCAAAGTTTAAA+CGG | - | chr6_1:4463178-4463197 | Msa0870170:CDS | 15.0% |
| !! | AAAAATTACCTTAAAAGATT+TGG | - | chr6_1:4462121-4462140 | Msa0870170:CDS | 15.0% |
| !! | CTTTATCATCTAATAAAAAA+AGG | - | chr6_1:4462818-4462837 | Msa0870170:intron | 15.0% |
| !! | ATTATGTATCAAAGTTTAAA+CGG | - | chr6_1:4463178-4463197 | Msa0870170:CDS | 15.0% |
| !!! | TTTCTAAAAGGAGTAATAAA+AGG | + | chr6_1:4461982-4462001 | None:intergenic | 20.0% |
| !!! | AATTTTTAGGTTATCATGTT+AGG | - | chr6_1:4463269-4463288 | Msa0870170:CDS | 20.0% |
| !!! | ATTTTTAGGTTATCATGTTA+GGG | - | chr6_1:4463270-4463289 | Msa0870170:CDS | 20.0% |
| !!! | CAAATTTTTTCTTCATAAAC+CGG | + | chr6_1:4463504-4463523 | None:intergenic | 20.0% |
| !!! | ATGAAGAAAAAATTTGTTAG+CGG | - | chr6_1:4463508-4463527 | Msa0870170:CDS | 20.0% |
| !! | AAGCACTAATTACTAATTAA+AGG | + | chr6_1:4463559-4463578 | None:intergenic | 20.0% |
| !! | ACTACAACAAAAATTATTTC+AGG | - | chr6_1:4463638-4463657 | Msa0870170:CDS | 20.0% |
| !!! | TTTCTAAAAGGAGTAATAAA+AGG | + | chr6_1:4461982-4462001 | None:intergenic | 20.0% |
| !!! | AATTTTTAGGTTATCATGTT+AGG | - | chr6_1:4463269-4463288 | Msa0870170:CDS | 20.0% |
| !!! | ATTTTTAGGTTATCATGTTA+GGG | - | chr6_1:4463270-4463289 | Msa0870170:CDS | 20.0% |
| !!! | CAAATTTTTTCTTCATAAAC+CGG | + | chr6_1:4463504-4463523 | None:intergenic | 20.0% |
| !!! | ATGAAGAAAAAATTTGTTAG+CGG | - | chr6_1:4463508-4463527 | Msa0870170:CDS | 20.0% |
| !! | AAGCACTAATTACTAATTAA+AGG | + | chr6_1:4463559-4463578 | None:intergenic | 20.0% |
| !! | ACTACAACAAAAATTATTTC+AGG | - | chr6_1:4463638-4463657 | Msa0870170:CDS | 20.0% |
| !! | ATTCCAAGTTTTCATCAAAA+TGG | + | chr6_1:4462195-4462214 | None:intergenic | 25.0% |
| ! | GTATGTTTGAAAATCTTTGA+GGG | + | chr6_1:4462221-4462240 | None:intergenic | 25.0% |
| ! | TACTAGCATGAGAAATATTA+AGG | - | chr6_1:4463093-4463112 | Msa0870170:intron | 25.0% |
| ! | TTATAATATGAGATGAAAGG+AGG | - | chr6_1:4463202-4463221 | Msa0870170:CDS | 25.0% |
| !!! | TTTTTAAAAAAAACTCCGGT+TGG | - | chr6_1:4463442-4463461 | Msa0870170:CDS | 25.0% |
| !! | ATTCCAAGTTTTCATCAAAA+TGG | + | chr6_1:4462195-4462214 | None:intergenic | 25.0% |
| ! | GTATGTTTGAAAATCTTTGA+GGG | + | chr6_1:4462221-4462240 | None:intergenic | 25.0% |
| ! | TACTAGCATGAGAAATATTA+AGG | - | chr6_1:4463093-4463112 | Msa0870170:intron | 25.0% |
| ! | TTATAATATGAGATGAAAGG+AGG | - | chr6_1:4463202-4463221 | Msa0870170:CDS | 25.0% |
| !!! | TTTTTAAAAAAAACTCCGGT+TGG | - | chr6_1:4463442-4463461 | Msa0870170:CDS | 25.0% |
| AAGGAGTAATAAAAGGAAAG+AGG | + | chr6_1:4461975-4461994 | None:intergenic | 30.0% | |
| TGGGAAATGGAATTTCTAAA+AGG | + | chr6_1:4461994-4462013 | None:intergenic | 30.0% | |
| ! | TTAGGTAGCCAAATCTTTTA+AGG | + | chr6_1:4462132-4462151 | None:intergenic | 30.0% |
| TAGCATCATGTTGAACATTT+AGG | + | chr6_1:4462150-4462169 | None:intergenic | 30.0% | |
| ! | AAAATGGTCATTTAGAGTAG+TGG | + | chr6_1:4462179-4462198 | None:intergenic | 30.0% |
| !! | TGACCATTTTGATGAAAACT+TGG | - | chr6_1:4462189-4462208 | Msa0870170:intron | 30.0% |
| GGTATGTTTGAAAATCTTTG+AGG | + | chr6_1:4462222-4462241 | None:intergenic | 30.0% | |
| ! | TGGAAGACTCAAGATTTTTA+AGG | + | chr6_1:4462281-4462300 | None:intergenic | 30.0% |
| ! | CTTTGTTTGTGACTATGTTT+AGG | + | chr6_1:4462325-4462344 | None:intergenic | 30.0% |
| AAACATAGTCACAAACAAAG+TGG | - | chr6_1:4462325-4462344 | Msa0870170:intron | 30.0% | |
| AGTTAGTGATTTCACATTCA+CGG | - | chr6_1:4462504-4462523 | Msa0870170:intron | 30.0% | |
| ! | GTGATATTTACCCTTTTGAT+GGG | - | chr6_1:4462584-4462603 | Msa0870170:intron | 30.0% |
| AAGTTATCCTTAAGACTTGT+GGG | + | chr6_1:4462691-4462710 | None:intergenic | 30.0% | |
| AAAGTTATCCTTAAGACTTG+TGG | + | chr6_1:4462692-4462711 | None:intergenic | 30.0% | |
| ACAAGTCTTAAGGATAACTT+TGG | - | chr6_1:4462691-4462710 | Msa0870170:intron | 30.0% | |
| TCTCTGCTTCATATTATAAG+TGG | - | chr6_1:4462912-4462931 | Msa0870170:intron | 30.0% | |
| GGCTTATAATATGAGATGAA+AGG | - | chr6_1:4463199-4463218 | Msa0870170:CDS | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | - | chr6_1:4463356-4463375 | Msa0870170:CDS | 30.0% | |
| TACGGCAAAACAATTTGATT+TGG | - | chr6_1:4463715-4463734 | Msa0870170:CDS | 30.0% | |
| !! | ACAATTTGATTTGGAATCTG+TGG | - | chr6_1:4463724-4463743 | Msa0870170:CDS | 30.0% |
| AAATCTAAACCAAGATGATG+TGG | - | chr6_1:4463835-4463854 | Msa0870170:CDS | 30.0% | |
| AAGGAGTAATAAAAGGAAAG+AGG | + | chr6_1:4461975-4461994 | None:intergenic | 30.0% | |
| TGGGAAATGGAATTTCTAAA+AGG | + | chr6_1:4461994-4462013 | None:intergenic | 30.0% | |
| ! | TTAGGTAGCCAAATCTTTTA+AGG | + | chr6_1:4462132-4462151 | None:intergenic | 30.0% |
| TAGCATCATGTTGAACATTT+AGG | + | chr6_1:4462150-4462169 | None:intergenic | 30.0% | |
| ! | AAAATGGTCATTTAGAGTAG+TGG | + | chr6_1:4462179-4462198 | None:intergenic | 30.0% |
| !! | TGACCATTTTGATGAAAACT+TGG | - | chr6_1:4462189-4462208 | Msa0870170:intron | 30.0% |
| GGTATGTTTGAAAATCTTTG+AGG | + | chr6_1:4462222-4462241 | None:intergenic | 30.0% | |
| ! | TGGAAGACTCAAGATTTTTA+AGG | + | chr6_1:4462281-4462300 | None:intergenic | 30.0% |
| ! | CTTTGTTTGTGACTATGTTT+AGG | + | chr6_1:4462325-4462344 | None:intergenic | 30.0% |
| AAACATAGTCACAAACAAAG+TGG | - | chr6_1:4462325-4462344 | Msa0870170:intron | 30.0% | |
| AGTTAGTGATTTCACATTCA+CGG | - | chr6_1:4462504-4462523 | Msa0870170:intron | 30.0% | |
| ! | GTGATATTTACCCTTTTGAT+GGG | - | chr6_1:4462584-4462603 | Msa0870170:intron | 30.0% |
| AAGTTATCCTTAAGACTTGT+GGG | + | chr6_1:4462691-4462710 | None:intergenic | 30.0% | |
| AAAGTTATCCTTAAGACTTG+TGG | + | chr6_1:4462692-4462711 | None:intergenic | 30.0% | |
| ACAAGTCTTAAGGATAACTT+TGG | - | chr6_1:4462691-4462710 | Msa0870170:intron | 30.0% | |
| TCTCTGCTTCATATTATAAG+TGG | - | chr6_1:4462912-4462931 | Msa0870170:intron | 30.0% | |
| GGCTTATAATATGAGATGAA+AGG | - | chr6_1:4463199-4463218 | Msa0870170:CDS | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | - | chr6_1:4463356-4463375 | Msa0870170:CDS | 30.0% | |
| TACGGCAAAACAATTTGATT+TGG | - | chr6_1:4463715-4463734 | Msa0870170:CDS | 30.0% | |
| !! | ACAATTTGATTTGGAATCTG+TGG | - | chr6_1:4463724-4463743 | Msa0870170:CDS | 30.0% |
| AAATCTAAACCAAGATGATG+TGG | - | chr6_1:4463835-4463854 | Msa0870170:CDS | 30.0% | |
| ATGGTTCTTGACTCAACAAT+GGG | + | chr6_1:4462013-4462032 | None:intergenic | 35.0% | |
| TATGGTTCTTGACTCAACAA+TGG | + | chr6_1:4462014-4462033 | None:intergenic | 35.0% | |
| AAGAACCATAAAACCTTCCA+AGG | - | chr6_1:4462024-4462043 | Msa0870170:CDS | 35.0% | |
| ! | TGAATCCTTGGAAGGTTTTA+TGG | + | chr6_1:4462032-4462051 | None:intergenic | 35.0% |
| AGTTTGGATGAATGAATCCT+TGG | + | chr6_1:4462044-4462063 | None:intergenic | 35.0% | |
| !!! | CTTTGAGGTTTTGAAGAGTT+TGG | + | chr6_1:4462060-4462079 | None:intergenic | 35.0% |
| CAAACTCTTCAAAACCTCAA+AGG | - | chr6_1:4462058-4462077 | Msa0870170:CDS | 35.0% | |
| !! | AAACCTCAAAGGTGTTCAAA+AGG | - | chr6_1:4462069-4462088 | Msa0870170:CDS | 35.0% |
| !! | AACCTCAAAGGTGTTCAAAA+GGG | - | chr6_1:4462070-4462089 | Msa0870170:CDS | 35.0% |
| CAAAAGGGACAAACACTAAA+AGG | - | chr6_1:4462085-4462104 | Msa0870170:CDS | 35.0% | |
| GACTATGTTTAGGCAAATCA+GGG | + | chr6_1:4462315-4462334 | None:intergenic | 35.0% | |
| TGACTATGTTTAGGCAAATC+AGG | + | chr6_1:4462316-4462335 | None:intergenic | 35.0% | |
| CAAACAAAGTGGTTTAGAGA+AGG | - | chr6_1:4462336-4462355 | Msa0870170:intron | 35.0% | |
| !!! | CTTTTTGAGTCTCTCCATTT+TGG | + | chr6_1:4462391-4462410 | None:intergenic | 35.0% |
| CAAAATGGAGAGACTCAAAA+AGG | - | chr6_1:4462389-4462408 | Msa0870170:intron | 35.0% | |
| !! | AAGTGTTGATGTGTTGAGTA+TGG | - | chr6_1:4462435-4462454 | Msa0870170:intron | 35.0% |
| ATTTCACATTCACGGAAGTT+GGG | - | chr6_1:4462512-4462531 | Msa0870170:intron | 35.0% | |
| GTGAAATCCGATCACTATAT+CGG | + | chr6_1:4462551-4462570 | None:intergenic | 35.0% | |
| ! | GGTGATATTTACCCTTTTGA+TGG | - | chr6_1:4462583-4462602 | Msa0870170:intron | 35.0% |
| TAGATTGATACAAGCGTTAG+AGG | + | chr6_1:4463302-4463321 | None:intergenic | 35.0% | |
| TAACGCTTGTATCAATCTAC+TGG | - | chr6_1:4463303-4463322 | Msa0870170:CDS | 35.0% | |
| TGCATAAAATATGCAAGGTC+CGG | - | chr6_1:4463361-4463380 | Msa0870170:CDS | 35.0% | |
| ! | TTACCACCAGTAGATTTTCT+TGG | + | chr6_1:4463407-4463426 | None:intergenic | 35.0% |
| TTAAAAAAAACTCCGGTTGG+TGG | - | chr6_1:4463445-4463464 | Msa0870170:CDS | 35.0% | |
| ATACTTTCTTTACCACCAAC+CGG | + | chr6_1:4463460-4463479 | None:intergenic | 35.0% | |
| ! | ATTATTTCAGGTCTTCATGC+TGG | - | chr6_1:4463650-4463669 | Msa0870170:CDS | 35.0% |
| ! | ATGAAATGGGTCACCTTTTA+GGG | - | chr6_1:4463753-4463772 | Msa0870170:CDS | 35.0% |
| ATGGTTCTTGACTCAACAAT+GGG | + | chr6_1:4462013-4462032 | None:intergenic | 35.0% | |
| TATGGTTCTTGACTCAACAA+TGG | + | chr6_1:4462014-4462033 | None:intergenic | 35.0% | |
| AAGAACCATAAAACCTTCCA+AGG | - | chr6_1:4462024-4462043 | Msa0870170:CDS | 35.0% | |
| ! | TGAATCCTTGGAAGGTTTTA+TGG | + | chr6_1:4462032-4462051 | None:intergenic | 35.0% |
| AGTTTGGATGAATGAATCCT+TGG | + | chr6_1:4462044-4462063 | None:intergenic | 35.0% | |
| !!! | CTTTGAGGTTTTGAAGAGTT+TGG | + | chr6_1:4462060-4462079 | None:intergenic | 35.0% |
| CAAACTCTTCAAAACCTCAA+AGG | - | chr6_1:4462058-4462077 | Msa0870170:CDS | 35.0% | |
| !! | AAACCTCAAAGGTGTTCAAA+AGG | - | chr6_1:4462069-4462088 | Msa0870170:CDS | 35.0% |
| !! | AACCTCAAAGGTGTTCAAAA+GGG | - | chr6_1:4462070-4462089 | Msa0870170:CDS | 35.0% |
| CAAAAGGGACAAACACTAAA+AGG | - | chr6_1:4462085-4462104 | Msa0870170:CDS | 35.0% | |
| GACTATGTTTAGGCAAATCA+GGG | + | chr6_1:4462315-4462334 | None:intergenic | 35.0% | |
| TGACTATGTTTAGGCAAATC+AGG | + | chr6_1:4462316-4462335 | None:intergenic | 35.0% | |
| CAAACAAAGTGGTTTAGAGA+AGG | - | chr6_1:4462336-4462355 | Msa0870170:intron | 35.0% | |
| !!! | CTTTTTGAGTCTCTCCATTT+TGG | + | chr6_1:4462391-4462410 | None:intergenic | 35.0% |
| CAAAATGGAGAGACTCAAAA+AGG | - | chr6_1:4462389-4462408 | Msa0870170:intron | 35.0% | |
| !! | AAGTGTTGATGTGTTGAGTA+TGG | - | chr6_1:4462435-4462454 | Msa0870170:intron | 35.0% |
| ATTTCACATTCACGGAAGTT+GGG | - | chr6_1:4462512-4462531 | Msa0870170:intron | 35.0% | |
| GTGAAATCCGATCACTATAT+CGG | + | chr6_1:4462551-4462570 | None:intergenic | 35.0% | |
| ! | GGTGATATTTACCCTTTTGA+TGG | - | chr6_1:4462583-4462602 | Msa0870170:intron | 35.0% |
| TAGATTGATACAAGCGTTAG+AGG | + | chr6_1:4463302-4463321 | None:intergenic | 35.0% | |
| TAACGCTTGTATCAATCTAC+TGG | - | chr6_1:4463303-4463322 | Msa0870170:CDS | 35.0% | |
| TGCATAAAATATGCAAGGTC+CGG | - | chr6_1:4463361-4463380 | Msa0870170:CDS | 35.0% | |
| ! | TTACCACCAGTAGATTTTCT+TGG | + | chr6_1:4463407-4463426 | None:intergenic | 35.0% |
| TTAAAAAAAACTCCGGTTGG+TGG | - | chr6_1:4463445-4463464 | Msa0870170:CDS | 35.0% | |
| ATACTTTCTTTACCACCAAC+CGG | + | chr6_1:4463460-4463479 | None:intergenic | 35.0% | |
| ! | ATTATTTCAGGTCTTCATGC+TGG | - | chr6_1:4463650-4463669 | Msa0870170:CDS | 35.0% |
| ! | ATGAAATGGGTCACCTTTTA+GGG | - | chr6_1:4463753-4463772 | Msa0870170:CDS | 35.0% |
| CTTGACTCAACAATGGGAAA+TGG | + | chr6_1:4462007-4462026 | None:intergenic | 40.0% | |
| TGGATGAATGAATCCTTGGA+AGG | + | chr6_1:4462040-4462059 | None:intergenic | 40.0% | |
| ! | GGACAAACACTAAAAGGCAT+TGG | - | chr6_1:4462091-4462110 | Msa0870170:CDS | 40.0% |
| ! | TGGTCATTTAGAGTAGTGGA+AGG | + | chr6_1:4462175-4462194 | None:intergenic | 40.0% |
| TACCATCACCTACATGTAAC+TGG | - | chr6_1:4462238-4462257 | Msa0870170:intron | 40.0% | |
| ! | TTTTGGTGAGTCTTGGAAGA+AGG | + | chr6_1:4462374-4462393 | None:intergenic | 40.0% |
| TCTTCCAAGACTCACCAAAA+TGG | - | chr6_1:4462374-4462393 | Msa0870170:intron | 40.0% | |
| !!! | GTGAGAACGCGTTTTTAAGT+TGG | - | chr6_1:4462476-4462495 | Msa0870170:intron | 40.0% |
| GATTTCACATTCACGGAAGT+TGG | - | chr6_1:4462511-4462530 | Msa0870170:intron | 40.0% | |
| TTTCACATTCACGGAAGTTG+GGG | - | chr6_1:4462513-4462532 | Msa0870170:intron | 40.0% | |
| AACTCGACCGATATAGTGAT+CGG | - | chr6_1:4462541-4462560 | Msa0870170:intron | 40.0% | |
| ATAGTGATCGGATTTCACCA+TGG | - | chr6_1:4462553-4462572 | Msa0870170:intron | 40.0% | |
| AAATATCACCGTGATCACCA+TGG | + | chr6_1:4462573-4462592 | None:intergenic | 40.0% | |
| GTATGAGCTAGAACATTTCC+TGG | + | chr6_1:4462610-4462629 | None:intergenic | 40.0% | |
| ! | AGTTTTCGTCTCCATCAAAG+TGG | + | chr6_1:4462657-4462676 | None:intergenic | 40.0% |
| ACTTTGATGGAGACGAAAAC+TGG | - | chr6_1:4462656-4462675 | Msa0870170:intron | 40.0% | |
| CTTAAGACTTGTGGGATTGT+TGG | + | chr6_1:4462683-4462702 | None:intergenic | 40.0% | |
| CAACAATCCCACAAGTCTTA+AGG | - | chr6_1:4462681-4462700 | Msa0870170:intron | 40.0% | |
| GCATAAAATATGCAAGGTCC+GGG | - | chr6_1:4463362-4463381 | Msa0870170:CDS | 40.0% | |
| CATAAAATATGCAAGGTCCG+GGG | - | chr6_1:4463363-4463382 | Msa0870170:CDS | 40.0% | |
| TATTCCCTTCCAAAGACCAA+CGG | - | chr6_1:4463691-4463710 | Msa0870170:CDS | 40.0% | |
| ! | ATCTGTGGCTTTGCATGAAA+TGG | - | chr6_1:4463739-4463758 | Msa0870170:CDS | 40.0% |
| ! | TCTGTGGCTTTGCATGAAAT+GGG | - | chr6_1:4463740-4463759 | Msa0870170:CDS | 40.0% |
| ! | CATGAAATGGGTCACCTTTT+AGG | - | chr6_1:4463752-4463771 | Msa0870170:CDS | 40.0% |
| ! | AGGGATACATAGCTGCATTT+TGG | + | chr6_1:4463796-4463815 | None:intergenic | 40.0% |
| ATGCAGCTATGTATCCCTAT+TGG | - | chr6_1:4463798-4463817 | Msa0870170:CDS | 40.0% | |
| TGCAGCTATGTATCCCTATT+GGG | - | chr6_1:4463799-4463818 | Msa0870170:CDS | 40.0% | |
| CTAAACCAAGATGATGTGGA+TGG | - | chr6_1:4463839-4463858 | Msa0870170:CDS | 40.0% | |
| TGATTCCATCCACATCATCT+TGG | + | chr6_1:4463847-4463866 | None:intergenic | 40.0% | |
| AGATGATGTGGATGGAATCA+TGG | - | chr6_1:4463847-4463866 | Msa0870170:CDS | 40.0% | |
| CTTGACTCAACAATGGGAAA+TGG | + | chr6_1:4462007-4462026 | None:intergenic | 40.0% | |
| TGGATGAATGAATCCTTGGA+AGG | + | chr6_1:4462040-4462059 | None:intergenic | 40.0% | |
| ! | GGACAAACACTAAAAGGCAT+TGG | - | chr6_1:4462091-4462110 | Msa0870170:CDS | 40.0% |
| ! | TGGTCATTTAGAGTAGTGGA+AGG | + | chr6_1:4462175-4462194 | None:intergenic | 40.0% |
| TACCATCACCTACATGTAAC+TGG | - | chr6_1:4462238-4462257 | Msa0870170:intron | 40.0% | |
| ! | TTTTGGTGAGTCTTGGAAGA+AGG | + | chr6_1:4462374-4462393 | None:intergenic | 40.0% |
| TCTTCCAAGACTCACCAAAA+TGG | - | chr6_1:4462374-4462393 | Msa0870170:intron | 40.0% | |
| !!! | GTGAGAACGCGTTTTTAAGT+TGG | - | chr6_1:4462476-4462495 | Msa0870170:intron | 40.0% |
| GATTTCACATTCACGGAAGT+TGG | - | chr6_1:4462511-4462530 | Msa0870170:intron | 40.0% | |
| TTTCACATTCACGGAAGTTG+GGG | - | chr6_1:4462513-4462532 | Msa0870170:intron | 40.0% | |
| AACTCGACCGATATAGTGAT+CGG | - | chr6_1:4462541-4462560 | Msa0870170:intron | 40.0% | |
| ATAGTGATCGGATTTCACCA+TGG | - | chr6_1:4462553-4462572 | Msa0870170:intron | 40.0% | |
| AAATATCACCGTGATCACCA+TGG | + | chr6_1:4462573-4462592 | None:intergenic | 40.0% | |
| GTATGAGCTAGAACATTTCC+TGG | + | chr6_1:4462610-4462629 | None:intergenic | 40.0% | |
| ! | AGTTTTCGTCTCCATCAAAG+TGG | + | chr6_1:4462657-4462676 | None:intergenic | 40.0% |
| ACTTTGATGGAGACGAAAAC+TGG | - | chr6_1:4462656-4462675 | Msa0870170:intron | 40.0% | |
| CTTAAGACTTGTGGGATTGT+TGG | + | chr6_1:4462683-4462702 | None:intergenic | 40.0% | |
| CAACAATCCCACAAGTCTTA+AGG | - | chr6_1:4462681-4462700 | Msa0870170:intron | 40.0% | |
| GCATAAAATATGCAAGGTCC+GGG | - | chr6_1:4463362-4463381 | Msa0870170:CDS | 40.0% | |
| CATAAAATATGCAAGGTCCG+GGG | - | chr6_1:4463363-4463382 | Msa0870170:CDS | 40.0% | |
| TATTCCCTTCCAAAGACCAA+CGG | - | chr6_1:4463691-4463710 | Msa0870170:CDS | 40.0% | |
| ! | ATCTGTGGCTTTGCATGAAA+TGG | - | chr6_1:4463739-4463758 | Msa0870170:CDS | 40.0% |
| ! | TCTGTGGCTTTGCATGAAAT+GGG | - | chr6_1:4463740-4463759 | Msa0870170:CDS | 40.0% |
| ! | CATGAAATGGGTCACCTTTT+AGG | - | chr6_1:4463752-4463771 | Msa0870170:CDS | 40.0% |
| ! | AGGGATACATAGCTGCATTT+TGG | + | chr6_1:4463796-4463815 | None:intergenic | 40.0% |
| ATGCAGCTATGTATCCCTAT+TGG | - | chr6_1:4463798-4463817 | Msa0870170:CDS | 40.0% | |
| TGCAGCTATGTATCCCTATT+GGG | - | chr6_1:4463799-4463818 | Msa0870170:CDS | 40.0% | |
| CTAAACCAAGATGATGTGGA+TGG | - | chr6_1:4463839-4463858 | Msa0870170:CDS | 40.0% | |
| TGATTCCATCCACATCATCT+TGG | + | chr6_1:4463847-4463866 | None:intergenic | 40.0% | |
| AGATGATGTGGATGGAATCA+TGG | - | chr6_1:4463847-4463866 | Msa0870170:CDS | 40.0% | |
| ! | GTCCCTTTTGAACACCTTTG+AGG | + | chr6_1:4462075-4462094 | None:intergenic | 45.0% |
| GACCAGTTACATGTAGGTGA+TGG | + | chr6_1:4462243-4462262 | None:intergenic | 45.0% | |
| CTACACGACCAGTTACATGT+AGG | + | chr6_1:4462249-4462268 | None:intergenic | 45.0% | |
| ATCTTGAGTCTTCCACGTTG+TGG | - | chr6_1:4462286-4462305 | Msa0870170:intron | 45.0% | |
| !! | CTCTCCATTTTGGTGAGTCT+TGG | + | chr6_1:4462381-4462400 | None:intergenic | 45.0% |
| GATCACTATATCGGTCGAGT+TGG | + | chr6_1:4462542-4462561 | None:intergenic | 45.0% | |
| GGATTTCACCATGGTGATCA+CGG | - | chr6_1:4462562-4462581 | Msa0870170:intron | 45.0% | |
| !! | ATTTACCCTTTTGATGGGCC+AGG | - | chr6_1:4462589-4462608 | Msa0870170:intron | 45.0% |
| CATTTCCTGGCCCATCAAAA+GGG | + | chr6_1:4462597-4462616 | None:intergenic | 45.0% | |
| ACATTTCCTGGCCCATCAAA+AGG | + | chr6_1:4462598-4462617 | None:intergenic | 45.0% | |
| CATACTTTCCCTCCAGAAGA+TGG | - | chr6_1:4462625-4462644 | Msa0870170:intron | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr6_1:4463334-4463353 | Msa0870170:CDS | 45.0% |
| ! | CCAGTAGATTTTCTTGGTGG+TGG | + | chr6_1:4463401-4463420 | None:intergenic | 45.0% |
| CCACCACCAAGAAAATCTAC+TGG | - | chr6_1:4463398-4463417 | Msa0870170:CDS | 45.0% | |
| ! | CCACCAGTAGATTTTCTTGG+TGG | + | chr6_1:4463404-4463423 | None:intergenic | 45.0% |
| CCACCAAGAAAATCTACTGG+TGG | - | chr6_1:4463401-4463420 | Msa0870170:CDS | 45.0% | |
| AGGTCTTCATGCTGGATTGT+TGG | - | chr6_1:4463658-4463677 | Msa0870170:CDS | 45.0% | |
| GGTCTTCATGCTGGATTGTT+GGG | - | chr6_1:4463659-4463678 | Msa0870170:CDS | 45.0% | |
| GTCTTCATGCTGGATTGTTG+GGG | - | chr6_1:4463660-4463679 | Msa0870170:CDS | 45.0% | |
| !! | AATTGTTTTGCCGTAGCCGT+TGG | + | chr6_1:4463710-4463729 | None:intergenic | 45.0% |
| TACTGTGTCCAAGCCCTAAA+AGG | + | chr6_1:4463769-4463788 | None:intergenic | 45.0% | |
| ! | GTCCCTTTTGAACACCTTTG+AGG | + | chr6_1:4462075-4462094 | None:intergenic | 45.0% |
| GACCAGTTACATGTAGGTGA+TGG | + | chr6_1:4462243-4462262 | None:intergenic | 45.0% | |
| CTACACGACCAGTTACATGT+AGG | + | chr6_1:4462249-4462268 | None:intergenic | 45.0% | |
| ATCTTGAGTCTTCCACGTTG+TGG | - | chr6_1:4462286-4462305 | Msa0870170:intron | 45.0% | |
| !! | CTCTCCATTTTGGTGAGTCT+TGG | + | chr6_1:4462381-4462400 | None:intergenic | 45.0% |
| GATCACTATATCGGTCGAGT+TGG | + | chr6_1:4462542-4462561 | None:intergenic | 45.0% | |
| GGATTTCACCATGGTGATCA+CGG | - | chr6_1:4462562-4462581 | Msa0870170:intron | 45.0% | |
| !! | ATTTACCCTTTTGATGGGCC+AGG | - | chr6_1:4462589-4462608 | Msa0870170:intron | 45.0% |
| CATTTCCTGGCCCATCAAAA+GGG | + | chr6_1:4462597-4462616 | None:intergenic | 45.0% | |
| ACATTTCCTGGCCCATCAAA+AGG | + | chr6_1:4462598-4462617 | None:intergenic | 45.0% | |
| CATACTTTCCCTCCAGAAGA+TGG | - | chr6_1:4462625-4462644 | Msa0870170:intron | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr6_1:4463334-4463353 | Msa0870170:CDS | 45.0% |
| ! | CCAGTAGATTTTCTTGGTGG+TGG | + | chr6_1:4463401-4463420 | None:intergenic | 45.0% |
| CCACCACCAAGAAAATCTAC+TGG | - | chr6_1:4463398-4463417 | Msa0870170:CDS | 45.0% | |
| ! | CCACCAGTAGATTTTCTTGG+TGG | + | chr6_1:4463404-4463423 | None:intergenic | 45.0% |
| CCACCAAGAAAATCTACTGG+TGG | - | chr6_1:4463401-4463420 | Msa0870170:CDS | 45.0% | |
| AGGTCTTCATGCTGGATTGT+TGG | - | chr6_1:4463658-4463677 | Msa0870170:CDS | 45.0% | |
| GGTCTTCATGCTGGATTGTT+GGG | - | chr6_1:4463659-4463678 | Msa0870170:CDS | 45.0% | |
| GTCTTCATGCTGGATTGTTG+GGG | - | chr6_1:4463660-4463679 | Msa0870170:CDS | 45.0% | |
| !! | AATTGTTTTGCCGTAGCCGT+TGG | + | chr6_1:4463710-4463729 | None:intergenic | 45.0% |
| TACTGTGTCCAAGCCCTAAA+AGG | + | chr6_1:4463769-4463788 | None:intergenic | 45.0% | |
| AAATCAGGGACACCACAACG+TGG | + | chr6_1:4462301-4462320 | None:intergenic | 50.0% | |
| CTTTCCCTCCAGAAGATGGA+AGG | - | chr6_1:4462629-4462648 | Msa0870170:intron | 50.0% | |
| AAGTGGAGCCTTCCATCTTC+TGG | + | chr6_1:4462640-4462659 | None:intergenic | 50.0% | |
| GATGGAAGGCTCCACTTTGA+TGG | - | chr6_1:4462643-4462662 | Msa0870170:intron | 50.0% | |
| CATCGTGAGCTTAGCTCAGT+TGG | - | chr6_1:4463329-4463348 | Msa0870170:CDS | 50.0% | |
| TCATGCTGGATTGTTGGGGA+AGG | - | chr6_1:4463664-4463683 | Msa0870170:CDS | 50.0% | |
| !! | GTAGCCGTTGGTCTTTGGAA+GGG | + | chr6_1:4463698-4463717 | None:intergenic | 50.0% |
| CTTCCAAAGACCAACGGCTA+CGG | - | chr6_1:4463697-4463716 | Msa0870170:CDS | 50.0% | |
| !!! | ATGGGTCACCTTTTAGGGCT+TGG | - | chr6_1:4463758-4463777 | Msa0870170:CDS | 50.0% |
| GCTATGTATCCCTATTGGGC+AGG | - | chr6_1:4463803-4463822 | Msa0870170:CDS | 50.0% | |
| ATCCCTATTGGGCAGGTGTA+AGG | - | chr6_1:4463810-4463829 | Msa0870170:CDS | 50.0% | |
| CTCCTTACACCTGCCCAATA+GGG | + | chr6_1:4463815-4463834 | None:intergenic | 50.0% | |
| TCTCCTTACACCTGCCCAAT+AGG | + | chr6_1:4463816-4463835 | None:intergenic | 50.0% | |
| AAATCAGGGACACCACAACG+TGG | + | chr6_1:4462301-4462320 | None:intergenic | 50.0% | |
| CTTTCCCTCCAGAAGATGGA+AGG | - | chr6_1:4462629-4462648 | Msa0870170:intron | 50.0% | |
| AAGTGGAGCCTTCCATCTTC+TGG | + | chr6_1:4462640-4462659 | None:intergenic | 50.0% | |
| GATGGAAGGCTCCACTTTGA+TGG | - | chr6_1:4462643-4462662 | Msa0870170:intron | 50.0% | |
| CATCGTGAGCTTAGCTCAGT+TGG | - | chr6_1:4463329-4463348 | Msa0870170:CDS | 50.0% | |
| TCATGCTGGATTGTTGGGGA+AGG | - | chr6_1:4463664-4463683 | Msa0870170:CDS | 50.0% | |
| !! | GTAGCCGTTGGTCTTTGGAA+GGG | + | chr6_1:4463698-4463717 | None:intergenic | 50.0% |
| CTTCCAAAGACCAACGGCTA+CGG | - | chr6_1:4463697-4463716 | Msa0870170:CDS | 50.0% | |
| !!! | ATGGGTCACCTTTTAGGGCT+TGG | - | chr6_1:4463758-4463777 | Msa0870170:CDS | 50.0% |
| GCTATGTATCCCTATTGGGC+AGG | - | chr6_1:4463803-4463822 | Msa0870170:CDS | 50.0% | |
| ATCCCTATTGGGCAGGTGTA+AGG | - | chr6_1:4463810-4463829 | Msa0870170:CDS | 50.0% | |
| CTCCTTACACCTGCCCAATA+GGG | + | chr6_1:4463815-4463834 | None:intergenic | 50.0% | |
| TCTCCTTACACCTGCCCAAT+AGG | + | chr6_1:4463816-4463835 | None:intergenic | 50.0% | |
| GGAGCCTTCCATCTTCTGGA+GGG | + | chr6_1:4462636-4462655 | None:intergenic | 55.0% | |
| TGGAGCCTTCCATCTTCTGG+AGG | + | chr6_1:4462637-4462656 | None:intergenic | 55.0% | |
| !!! | GATTTTCTTGGTGGTGGCCG+AGG | + | chr6_1:4463395-4463414 | None:intergenic | 55.0% |
| !! | CGTAGCCGTTGGTCTTTGGA+AGG | + | chr6_1:4463699-4463718 | None:intergenic | 55.0% |
| !! | TTGCCGTAGCCGTTGGTCTT+TGG | + | chr6_1:4463703-4463722 | None:intergenic | 55.0% |
| GGAGCCTTCCATCTTCTGGA+GGG | + | chr6_1:4462636-4462655 | None:intergenic | 55.0% | |
| TGGAGCCTTCCATCTTCTGG+AGG | + | chr6_1:4462637-4462656 | None:intergenic | 55.0% | |
| !!! | GATTTTCTTGGTGGTGGCCG+AGG | + | chr6_1:4463395-4463414 | None:intergenic | 55.0% |
| !! | CGTAGCCGTTGGTCTTTGGA+AGG | + | chr6_1:4463699-4463718 | None:intergenic | 55.0% |
| !! | TTGCCGTAGCCGTTGGTCTT+TGG | + | chr6_1:4463703-4463722 | None:intergenic | 55.0% |
| AAGGTCCGGGGTTCGAACCT+CGG | - | chr6_1:4463375-4463394 | Msa0870170:CDS | 60.0% | |
| AAGGTCCGGGGTTCGAACCT+CGG | - | chr6_1:4463375-4463394 | Msa0870170:CDS | 60.0% | |
| GGTGGCCGAGGTTCGAACCC+CGG | + | chr6_1:4463383-4463402 | None:intergenic | 70.0% | |
| GGTGGCCGAGGTTCGAACCC+CGG | + | chr6_1:4463383-4463402 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 4461944 | 4463892 | 4461944 | ID=Msa0870170;Name=Msa0870170 |
| chr6_1 | mRNA | 4461944 | 4463892 | 4461944 | ID=Msa0870170-mRNA-1;Parent=Msa0870170;Name=Msa0870170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|333 |
| chr6_1 | exon | 4463124 | 4463892 | 4463124 | ID=Msa0870170-mRNA-1:exon:1414;Parent=Msa0870170-mRNA-1 |
| chr6_1 | exon | 4461944 | 4462176 | 4461944 | ID=Msa0870170-mRNA-1:exon:1413;Parent=Msa0870170-mRNA-1 |
| chr6_1 | CDS | 4463124 | 4463892 | 4463124 | ID=Msa0870170-mRNA-1:cds;Parent=Msa0870170-mRNA-1 |
| chr6_1 | CDS | 4461944 | 4462176 | 4461944 | ID=Msa0870170-mRNA-1:cds;Parent=Msa0870170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
