AlfalfaGEDB | Msa1341130

M. sativa cultivar zhongmu-4 / Msa1341130

KEGG: K14844
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006417 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0010608 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032268 GO:0032501 GO:0032502 GO:0034248 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:2000112
PFAM: PF00806.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1341130	XP_013458284.1	97.966	639	11	2	1	637	1	639	0.0	1270

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1341130	sp\|Q9LRZ3\|PUM24_ARATH	57.643	628	246	6	13	627	13	633	0.0	716

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1341130	A0A072V2I3	97.966	639	11	2	1	637	1	639	0.0	1270

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0044890	Msa1341130	0.850071	2.151793e-60	-8.615850e-47
Msa0068970	Msa1341130	0.856750	2.604602e-62	-8.615850e-47
Msa0087910	Msa1341130	0.807017	6.207481e-50	-8.615850e-47
Msa0164770	Msa1341130	0.806924	6.494541e-50	-8.615850e-47
Msa0183090	Msa1341130	0.801592	8.371371e-49	-8.615850e-47
Msa0231030	Msa1341130	0.810982	8.790463e-51	-8.615850e-47
Msa0235050	Msa1341130	0.802543	5.338410e-49	-8.615850e-47
Msa0342850	Msa1341130	0.820206	7.750709e-53	-8.615850e-47
Msa0426090	Msa1341130	0.806033	1.001027e-49	-8.615850e-47
Msa0426250	Msa1341130	0.838388	2.962352e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1341130	MtrunA17_Chr4g0067761	97.966	639	11	2	1	637	1	639	0.0	1270
Msa1341130	MtrunA17_Chr2g0298151	23.239	284	181	7	108	374	654	917	9.85e-11	65.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1341130	AT3G16810.1	57.643	628	246	6	13	627	13	633	0.0	716
Msa1341130	AT3G20250.1	23.549	293	183	6	88	362	557	826	5.40e-13	72.8
Msa1341130	AT3G20250.3	23.549	293	183	6	88	362	593	862	9.28e-13	72.0
Msa1341130	AT3G20250.2	23.549	293	183	6	88	362	593	862	9.28e-13	72.0
Msa1341130	AT4G25880.1	22.383	277	183	5	108	372	530	786	2.97e-11	67.4
Msa1341130	AT4G25880.5	22.383	277	183	5	108	372	530	786	2.97e-11	67.4
Msa1341130	AT4G25880.4	22.383	277	183	5	108	372	530	786	3.63e-11	67.0
Msa1341130	AT4G25880.3	23.102	303	195	8	87	372	499	780	6.54e-11	66.2
Msa1341130	AT4G25880.2	23.102	303	195	8	87	372	499	780	7.00e-11	65.9

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Find 155 sgRNAs with CRISPR-Local

Find 486 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGCTTATCATCAATA+TGG	0.256659	tig0004800:+11805	Msa1341130:CDS
AAAAGGGAAATGTGAATTAT+GGG	0.335970	tig0004800:+14359	Msa1341130:CDS
AAAATGATATAGGGGTGCAT+TGG	0.580583	tig0004800:-14692	None:intergenic
AAACAGCTTATCATCAATAT+GGG	0.473207	tig0004800:+11806	Msa1341130:CDS
AAAGGATTGAAAGGGCATAT+AGG	0.458943	tig0004800:+11781	Msa1341130:CDS
AAATGTGAATTATGGGCCCA+TGG	0.606288	tig0004800:+14366	Msa1341130:CDS
AACAGTTGGGATGTAGTAAT+TGG	0.330105	tig0004800:-13409	None:intergenic
AAGATTATCAAAGGATTGAA+AGG	0.476896	tig0004800:+11772	Msa1341130:CDS
AAGTCCCAACGAAGGAAACC+AGG	0.600794	tig0004800:+10642	Msa1341130:CDS
AATTATGGGCCCATGGTCAC+AGG	0.521124	tig0004800:+14373	Msa1341130:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCGATTCAGAAAAAGTGATT+TGG	-	tig0004800:8296-8315	None:intergenic	30.0%
TAAGTTGTGTGAAACTGTTT+GGG	-	tig0004800:8762-8781	None:intergenic	30.0%
ATAAGTTGTGTGAAACTGTT+TGG	-	tig0004800:8763-8782	None:intergenic	30.0%
TCAAATAAGTCAATCCAAAC+AGG	+	tig0004800:8797-8816	Msa1341130:intron	30.0%
AGCTTATACAAAAACAGTCT+AGG	-	tig0004800:8823-8842	None:intergenic	30.0%
TGAAATAACACCTCTTCAAA+AGG	-	tig0004800:9071-9090	None:intergenic	30.0%
TAGGCTAGATTTAGAAAATG+CGG	-	tig0004800:9529-9548	None:intergenic	30.0%
TTGGTATGTAACATAGGTTT+GGG	+	tig0004800:9776-9795	Msa1341130:intron	30.0%
ATTTCAATGTGCAGCTATAA+AGG	-	tig0004800:9883-9902	None:intergenic	30.0%
AACCTCTTGTGTAAAAAACA+GGG	+	tig0004800:10004-10023	Msa1341130:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0004800	gene	7994	15105	7994	ID=Msa1341130;Name=Msa1341130
tig0004800	mRNA	7994	15105	7994	ID=Msa1341130-mRNA-1;Parent=Msa1341130;Name=Msa1341130-mRNA-1;_AED=0.25;_eAED=0.25;_QI=83\|1\|1\|1\|1\|1\|17\|483\|637
tig0004800	exon	7994	8265	7994	ID=Msa1341130-mRNA-1:exon:2999;Parent=Msa1341130-mRNA-1
tig0004800	exon	8354	8407	8354	ID=Msa1341130-mRNA-1:exon:3000;Parent=Msa1341130-mRNA-1
tig0004800	exon	9132	9193	9132	ID=Msa1341130-mRNA-1:exon:3001;Parent=Msa1341130-mRNA-1
tig0004800	exon	9293	9374	9293	ID=Msa1341130-mRNA-1:exon:3002;Parent=Msa1341130-mRNA-1
tig0004800	exon	9469	9592	9469	ID=Msa1341130-mRNA-1:exon:3003;Parent=Msa1341130-mRNA-1
tig0004800	exon	9695	9778	9695	ID=Msa1341130-mRNA-1:exon:3004;Parent=Msa1341130-mRNA-1
tig0004800	exon	10549	10663	10549	ID=Msa1341130-mRNA-1:exon:3005;Parent=Msa1341130-mRNA-1
tig0004800	exon	11296	11446	11296	ID=Msa1341130-mRNA-1:exon:3006;Parent=Msa1341130-mRNA-1
tig0004800	exon	11551	11664	11551	ID=Msa1341130-mRNA-1:exon:3007;Parent=Msa1341130-mRNA-1
tig0004800	exon	11763	11834	11763	ID=Msa1341130-mRNA-1:exon:3008;Parent=Msa1341130-mRNA-1
tig0004800	exon	12930	12980	12930	ID=Msa1341130-mRNA-1:exon:3009;Parent=Msa1341130-mRNA-1
tig0004800	exon	13073	13123	13073	ID=Msa1341130-mRNA-1:exon:3010;Parent=Msa1341130-mRNA-1
tig0004800	exon	13389	13496	13389	ID=Msa1341130-mRNA-1:exon:3011;Parent=Msa1341130-mRNA-1
tig0004800	exon	13577	13777	13577	ID=Msa1341130-mRNA-1:exon:3012;Parent=Msa1341130-mRNA-1
tig0004800	exon	13984	14058	13984	ID=Msa1341130-mRNA-1:exon:3013;Parent=Msa1341130-mRNA-1
tig0004800	exon	14147	14394	14147	ID=Msa1341130-mRNA-1:exon:3014;Parent=Msa1341130-mRNA-1
tig0004800	exon	14490	15105	14490	ID=Msa1341130-mRNA-1:exon:3015;Parent=Msa1341130-mRNA-1
tig0004800	five_prime_UTR	7994	8076	7994	ID=Msa1341130-mRNA-1:five_prime_utr;Parent=Msa1341130-mRNA-1
tig0004800	CDS	8077	8265	8077	ID=Msa1341130-mRNA-1:cds;Parent=Msa1341130-mRNA-1
tig0004800	CDS	8354	8407	8354	ID=Msa1341130-mRNA-1:cds;Parent=Msa1341130-mRNA-1
tig0004800	CDS	9132	9193	9132	ID=Msa1341130-mRNA-1:cds;Parent=Msa1341130-mRNA-1
tig0004800	CDS	9293	9374	9293	ID=Msa1341130-mRNA-1:cds;Parent=Msa1341130-mRNA-1
tig0004800	CDS	9469	9592	9469	ID=Msa1341130-mRNA-1:cds;Parent=Msa1341130-mRNA-1
tig0004800	CDS	9695	9778	9695	ID=Msa1341130-mRNA-1:cds;Parent=Msa1341130-mRNA-1
tig0004800	CDS	10549	10663	10549	ID=Msa1341130-mRNA-1:cds;Parent=Msa1341130-mRNA-1
tig0004800	CDS	11296	11446	11296	ID=Msa1341130-mRNA-1:cds;Parent=Msa1341130-mRNA-1
tig0004800	CDS	11551	11664	11551	ID=Msa1341130-mRNA-1:cds;Parent=Msa1341130-mRNA-1
tig0004800	CDS	11763	11834	11763	ID=Msa1341130-mRNA-1:cds;Parent=Msa1341130-mRNA-1
tig0004800	CDS	12930	12980	12930	ID=Msa1341130-mRNA-1:cds;Parent=Msa1341130-mRNA-1
tig0004800	CDS	13073	13123	13073	ID=Msa1341130-mRNA-1:cds;Parent=Msa1341130-mRNA-1
tig0004800	CDS	13389	13496	13389	ID=Msa1341130-mRNA-1:cds;Parent=Msa1341130-mRNA-1
tig0004800	CDS	13577	13777	13577	ID=Msa1341130-mRNA-1:cds;Parent=Msa1341130-mRNA-1
tig0004800	CDS	13984	14058	13984	ID=Msa1341130-mRNA-1:cds;Parent=Msa1341130-mRNA-1
tig0004800	CDS	14147	14394	14147	ID=Msa1341130-mRNA-1:cds;Parent=Msa1341130-mRNA-1
tig0004800	CDS	14490	14622	14490	ID=Msa1341130-mRNA-1:cds;Parent=Msa1341130-mRNA-1
tig0004800	three_prime_UTR	14623	15105	14623	ID=Msa1341130-mRNA-1:three_prime_utr;Parent=Msa1341130-mRNA-1

Gene Sequence

>Msa1341130

ATGGCGGCGAAGAAGCAACAAGAGGTTGACATCAAAAAGAGAAAGCGAATCGACACTAAAACTCCTTCTTCTAATCCGAAGAAATCCACTACCAAATTCGTTCCTTCAAAGAAGCCAAAACCTCACTCCGATGATAAAGACAAGAACAAAACTCCCCTTAACGCCCGTGAACGTCGTCACCATGCTAAGGAACTCACTGATGCTAGAAAACAGAAGAGAAGACGCCATTACACTCTTGAACAAGAGCTTGCACGTCTATGGGAAAAGATGAGACGTCACGAGATTGCTAAAGAAGACAGATCCAAGCTGGTGACAGAAGCTCTAACAAAAATGAAGGGGAAGATTCATGAGATTGCAGGGTCTCACATTACTTCTCGTGTTCTTCAGACTTGTGTTAAACATTGTTCACAAGCTGAAAGAGATCAAGTATTTGAAGAGCTTCGTCCGCATTTTCTAAATCTAGCCTACAGTGCATATGCTGTTCACTTAGTAAAGAAGATGCTTGACAATGCCTCGAAGAAACAACTGGCAGGCTTTATCTCTACTCTTCGTGGCCATGTTGCTCCTCTTCTTCGCCACATGGTTGGATCAGTTGTTGTTGAGCATGCATATGACTTGGCCAGTGCTGCTCAAAAGCAAGAGCTACTTTTGGAATTATATTCCACAGAGCTTCAGTTGTTTAAGGACCAAGTCCCAACGAAGGAAACCAGATTACTAGATGTAATGTCCAAGTTGGGTCTACAAAAAGGCTCAGTTTCACGTCATATGTCGAAAGTGATTCAGCCAATTTTAGAGAAAGGGATAGTTGACCACTCTATCCTACACAGAGTCTTGTTGGAATACTTTAGCATTGCTGATAAGACCTCTGTTGCAGAGATAATCCAAGTGTTATCAAGTCCACTACTTATCAGAATGATTGGTACAAAGGATGGAGCCAAAATTGGAATTCTTTGTGTGAAATATGGGAATGCCAAGGAAAGAAAGAAGATTATCAAAGGATTGAAAGGGCATATAGGAAAAACAGCTTATCATCAATATGGGTGTATGGTGCTGGTTTCCATCCTTTCAGTTGTCGACGATACAAAACTGATAACAAAGGTTATCATTCGCGAGCTTCAATCAATTCTGAAGGAGCTTGTTTTGGACAAGAATGGAAGACGTCCTTTACTCCAATTACTACATCCCAACTGTTCACGCTACTTCAGTCCTGATGAACTTGCTTCTATGAATTCATCTATACCTTCTCTGTCTCTCAAGGATCAGTCAGAAGCAAGCTCTCAGACAGAAACTTCCAAGGTTTCAATTGGCGACGATGATTCCATGGAAGACAGCAAAGTGAAAGTGCCCGAAGTTAATGAAGATAAAACTTCTGTGGATGATACTGACCTAGCTGAGAGTGGAAAGAAAGACCCATTGGTCAGAAGGCAGGAGCTATTGATCAACAGTGGACTTGCAGAGAGTCTTCTTGATATATGCATTGAGAATGTAGGAGAACTGATACGGTCAAATTTTGGCAAAGAGGTCATATACGAGGTTGCGACAGGGGGATCTGAGGGCATATTGCATCCAACTTTGGATGATAAGATTAATTCTCTCCACAAAGCGATAGCATCTCTTGCAGCAGTGCCTAAGTCAGAAGATTCACAAGAGGAGCACGTCCTTGAAAATTTCTTTTCAAATCGGACCATTAGAAAACTAATCTTGGACTGCCCCGACTTTGCTTCCATCTTGTGGAAGGAAGCTTTAAAAGGGAAATGTGAATTATGGGCCCATGGTCACAGCTGTAAGGTTATCACTGCATTTTTGGAATCAACAGATTCAAAGGTACAGAAGCTTGCAAAAAAAGAGTTGCAGCCTTTAATTGATAATGGAGTTCTCAAGAACCCACAGCCCAAAGAACAAGCAAGCCAATGA

Protein sequence

>Msa1341130

MAAKKQQEVDIKKRKRIDTKTPSSNPKKSTTKFVPSKKPKPHSDDKDKNKTPLNARERRHHAKELTDARKQKRRRHYTLEQELARLWEKMRRHEIAKEDRSKLVTEALTKMKGKIHEIAGSHITSRVLQTCVKHCSQAERDQVFEELRPHFLNLAYSAYAVHLVKKMLDNASKKQLAGFISTLRGHVAPLLRHMVGSVVVEHAYDLASAAQKQELLLELYSTELQLFKDQVPTKETRLLDVMSKLGLQKGSVSRHMSKVIQPILEKGIVDHSILHRVLLEYFSIADKTSVAEIIQVLSSPLLIRMIGTKDGAKIGILCVKYGNAKERKKIIKGLKGHIGKTAYHQYGCMVLVSILSVVDDTKLITKVIIRELQSILKELVLDKNGRRPLLQLLHPNCSRYFSPDELASMNSSIPSLSLKDQSEASSQTETSKVSIGDDDSMEDSKVKVPEVNEDKTSVDDTDLAESGKKDPLVRRQELLINSGLAESLLDICIENVGELIRSNFGKEVIYEVATGGSEGILHPTLDDKINSLHKAIASLAAVPKSEDSQEEHVLENFFSNRTIRKLILDCPDFASILWKEALKGKCELWAHGHSCKVITAFLESTDSKVQKLAKKELQPLIDNGVLKNPQPKEQASQ*