AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1209760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1209760 MtrunA17_Chr4g0058931 93.613 548 30 2 1 545 1 546 0.0 816
Msa1209760 MtrunA17_Chr7g0229191 94.118 34 2 0 454 487 61 94 1.50e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1209760 AT5G66540.1 65.052 289 95 3 241 529 234 516 8.40e-111 342
Msa1209760 AT5G66540.2 65.052 289 95 3 241 529 234 516 8.40e-111 342

Find 133 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTCAAATGCACTATTTA+TGG 0.093083 8_1:+68349353 None:intergenic
GATCAATTGCTTGAAGTTTC+TGG 0.095354 8_1:-68349790 Msa1209760:CDS
AGCTCGTCCAATGGTGATTT+TGG 0.111667 8_1:+68351901 None:intergenic
AGATGAAGAGGCAGAGGATA+TGG 0.174833 8_1:-68351162 Msa1209760:CDS
GGAAGAGATTGCACAGTTTA+AGG 0.176329 8_1:-68351770 Msa1209760:CDS
AAGGCAGACAATGCAATTTC+TGG 0.243296 8_1:-68347166 Msa1209760:CDS
AATGCAGCGTTTCTCATATA+AGG 0.243577 8_1:+68347115 None:intergenic
TGTTGATGTCATACAGGTTT+TGG 0.274566 8_1:+68347812 None:intergenic
AATAAGAAAAGAAAATTTAA+AGG 0.291738 8_1:-68347446 Msa1209760:intron
TTCAGGTATGAAGACTTCTT+TGG 0.307524 8_1:-68349844 Msa1209760:intron
GTTACGATGCTGAGCAGATT+TGG 0.331858 8_1:-68351867 Msa1209760:CDS
TGATGCAGCACGAGCGGTTT+CGG 0.332193 8_1:+68351957 None:intergenic
TGCACAGTTTAAGGTTCCTT+TGG 0.335351 8_1:-68351761 Msa1209760:CDS
ACTTCAAATGCACTATTTAT+GGG 0.338357 8_1:+68349354 None:intergenic
TGATGGGAAGGGTGATGTTA+AGG 0.338827 8_1:-68347513 Msa1209760:CDS
CCAGAGCAGGTACATTTGTT+TGG 0.351936 8_1:+68347688 None:intergenic
TTAAACTGTGCAATCTCTTC+CGG 0.361572 8_1:+68351772 None:intergenic
TTGGACGAGCTTCTCGTTGA+TGG 0.365351 8_1:-68351889 Msa1209760:CDS
GTAACCTCCTCGGTGATTAC+AGG 0.369005 8_1:+68349297 None:intergenic
GTTTCGGAAACCGATGGGTT+TGG 0.370561 8_1:+68351973 None:intergenic
GCAATTTCTGGCCAAGTTGA+TGG 0.372805 8_1:-68347154 Msa1209760:CDS
GCTCCTGAGGAGGTCTTTGA+TGG 0.383778 8_1:-68347530 Msa1209760:CDS
TGTTTCAGATGCTGCTATGC+TGG 0.385553 8_1:-68347552 Msa1209760:CDS
CTGTTCGTTTCGGTGGTGAA+TGG 0.386376 8_1:+68352085 None:intergenic
GGAGGTTGCTCTGTTCGTTT+CGG 0.388281 8_1:+68352075 None:intergenic
AACAGAGCAACCTCCATTCA+TGG 0.399434 8_1:-68352067 Msa1209760:exon
GATGAAGAGGCAGAGGATAT+GGG 0.406030 8_1:-68351161 Msa1209760:CDS
GAAGGCAAGGTCGGAAAAGA+AGG 0.411991 8_1:-68347185 Msa1209760:CDS
TTTAAGGTTCCTTTGGATGA+TGG 0.412987 8_1:-68351754 Msa1209760:CDS
TCGTTTGTGTTGGCCATGAA+TGG 0.414447 8_1:+68352054 None:intergenic
TTGAATTTGACAGGTTATAG+AGG 0.419942 8_1:-68347721 Msa1209760:intron
GGAAGATAATTATGAGAAAG+AGG 0.440594 8_1:-68351452 Msa1209760:CDS
ACCTCTTCCATTGCCAGAGC+AGG 0.442928 8_1:+68347675 None:intergenic
AGGGTCTGAGAGTAGTGAAT+AGG 0.443059 8_1:+68351929 None:intergenic
GGCGCTTTCGATGGCAACTT+AGG 0.452769 8_1:+68348422 None:intergenic
TGACATGGAATCAGACAAAC+AGG 0.453062 8_1:-68349758 Msa1209760:intron
TGCTGCTATGCTGGCTCCTG+AGG 0.460263 8_1:-68347543 Msa1209760:CDS
GCCTCGAGAAGTTAAACAAT+TGG 0.460582 8_1:-68348402 Msa1209760:intron
GAGCAAAGTTGAAATGAGAA+AGG 0.460705 8_1:+68347834 None:intergenic
ACTCATGTATGTAGAAGAAA+AGG 0.461376 8_1:-68349603 Msa1209760:intron
CCAAACAAATGTACCTGCTC+TGG 0.461589 8_1:-68347688 Msa1209760:CDS
TGAAGAAGATGAAGAGGCAG+AGG 0.463469 8_1:-68351168 Msa1209760:CDS
CCATGGGCAGATTGCTCCTG+TGG 0.464601 8_1:-68347576 Msa1209760:intron
TTCCCATCAAAGACCTCCTC+AGG 0.466487 8_1:+68347527 None:intergenic
TTATGAGAAAGAGGAGGAGA+TGG 0.468145 8_1:-68351443 Msa1209760:CDS
GTTGAAAAGAAGAAGACAAA+AGG 0.469612 8_1:-68351628 Msa1209760:CDS
GTTTCTGTGTTGCGTAAACT+TGG 0.471301 8_1:-68346971 Msa1209760:CDS
TGAGGAGGTCTTTGATGGGA+AGG 0.472688 8_1:-68347525 Msa1209760:CDS
ATGCAGCGTTTCTCATATAA+GGG 0.472860 8_1:+68347116 None:intergenic
GATTTGTTGCAGACGGCGTA+AGG 0.476397 8_1:+68352017 None:intergenic
TAAATCCATACAAAACTCTC+TGG 0.478861 8_1:-68352126 None:intergenic
AGCAGGTACATTTGTTTGGA+AGG 0.487299 8_1:+68347692 None:intergenic
AAAGAGAAAGTTAAAGGTGG+TGG 0.487503 8_1:-68351529 Msa1209760:CDS
TTAAGGTTCCTTTGGATGAT+GGG 0.489781 8_1:-68351753 Msa1209760:CDS
AGTAAACAAGTTGGAAAAGA+AGG 0.491890 8_1:-68347203 Msa1209760:CDS
GGGTTTGGAGCGAGCAATGA+AGG 0.494823 8_1:+68351988 None:intergenic
AGGTATGAAGACTTCTTTGG+AGG 0.496737 8_1:-68349841 Msa1209760:CDS
TTAATATTCTTCACAAAATG+TGG 0.499043 8_1:+68347040 None:intergenic
GAAAAGAAGAAGACAAAAGG+AGG 0.505553 8_1:-68351625 Msa1209760:CDS
TTACACAGGCAGAAAGGAAA+AGG 0.506282 8_1:-68347478 Msa1209760:CDS
GACTGAGTATTTAGAGAAGG+AGG 0.507167 8_1:-68351473 Msa1209760:CDS
TACGCCGGCGTCGTTTGTGT+TGG 0.507989 8_1:+68352044 None:intergenic
AAGACAAAAGGAGGAAGTGA+AGG 0.508745 8_1:-68351616 Msa1209760:CDS
ACTTCTCGAGGCGCTTTCGA+TGG 0.510043 8_1:+68348413 None:intergenic
GATGAAGATGAAGACGTTGA+GGG 0.510080 8_1:-68351568 Msa1209760:CDS
TGATGAAGATGAAGACGTTG+AGG 0.510390 8_1:-68351569 Msa1209760:CDS
TCAATCAAAGATAGAGCTGA+TGG 0.510946 8_1:-68349545 Msa1209760:CDS
AGTTAAAGGTGGTGGAATTG+AGG 0.516442 8_1:-68351521 Msa1209760:CDS
GGATGATAATAAAAGCGGGC+AGG 0.519527 8_1:-68348283 Msa1209760:CDS
ACCAATTGTTTAACTTCTCG+AGG 0.520579 8_1:+68348401 None:intergenic
TGAAGACGTTGAGGGAGATG+AGG 0.520900 8_1:-68351560 Msa1209760:CDS
TAAGAAAATCTGTCTGAAGC+TGG 0.526928 8_1:-68347861 Msa1209760:CDS
AAATGTACCTGCTCTGGCAA+TGG 0.529834 8_1:-68347682 Msa1209760:CDS
ATTCAACCGGCGACGAAGAG+TGG 0.530069 8_1:+68351810 None:intergenic
GACGGAGATAAAGAAGAGAG+TGG 0.531137 8_1:-68351725 Msa1209760:CDS
CGAGCGGTTTCGGAAACCGA+TGG 0.531297 8_1:+68351967 None:intergenic
ACCTGCTCTGGCAATGGAAG+AGG 0.534823 8_1:-68347676 Msa1209760:intron
GAATGACAATGGAGCAGAAG+TGG 0.535840 8_1:+68348088 None:intergenic
AGTTCATCTTTGAATGACAA+TGG 0.536898 8_1:+68348077 None:intergenic
ATTGACTGAGTATTTAGAGA+AGG 0.540405 8_1:-68351476 Msa1209760:CDS
TGAAGATGAAGAAGATGAAG+AGG 0.542048 8_1:-68351174 Msa1209760:CDS
GAGCGGTTTCGGAAACCGAT+GGG 0.542862 8_1:+68351968 None:intergenic
ACGGCGTAAGGCTTCTACGC+CGG 0.544167 8_1:+68352029 None:intergenic
CTTCTCCCCAAAATCACCAT+TGG 0.548616 8_1:-68351908 Msa1209760:CDS
GAAGAGAGTGGAGTTAGAAG+AGG 0.553516 8_1:-68351713 Msa1209760:CDS
AGCAAAGTTGAAATGAGAAA+GGG 0.555325 8_1:+68347835 None:intergenic
CTCCTGAGGAGGTCTTTGAT+GGG 0.558202 8_1:-68347529 Msa1209760:CDS
GGAGGTTACAGCTTCAATTG+AGG 0.559555 8_1:-68349283 Msa1209760:CDS
AGCTGAGGCAGTAAACAAGT+TGG 0.560600 8_1:-68347212 Msa1209760:CDS
AATGACAATGGAGCAGAAGT+GGG 0.561560 8_1:+68348089 None:intergenic
ATTGCTCGCTCCAAACCCAT+CGG 0.561906 8_1:-68351983 Msa1209760:CDS
CAGAACTTACACAGGCAGAA+AGG 0.564588 8_1:-68347484 Msa1209760:CDS
GGTTGCTCTGTTCGTTTCGG+TGG 0.569895 8_1:+68352078 None:intergenic
TGCTATGCTGGCTCCTGAGG+AGG 0.570534 8_1:-68347540 Msa1209760:CDS
AGACGTTGAGGGAGATGAGG+AGG 0.570851 8_1:-68351557 Msa1209760:CDS
TTCTACCTATGAAAAGCAGC+GGG 0.572984 8_1:-68349575 Msa1209760:CDS
AAAAGAAATTACCATCAACT+TGG 0.578509 8_1:+68347143 None:intergenic
GTGGATCGATTTGTTGCAGA+CGG 0.580962 8_1:+68352010 None:intergenic
GTCTTCTTCCCATCATCCAA+AGG 0.582328 8_1:+68351745 None:intergenic
ATAGGCTGGTGAGTTTGAGA+TGG 0.582433 8_1:-68351216 Msa1209760:intron
GTTGGAAAAGAAGGCAAGGT+CGG 0.584798 8_1:-68347194 Msa1209760:CDS
AACTTGGACTATGCAGGGTG+AGG 0.584934 8_1:-68349500 Msa1209760:intron
TGCAGGATGATAATAAAAGC+GGG 0.597217 8_1:-68348287 Msa1209760:intron
TTTGGATGATGGGAAGAAGA+CGG 0.597286 8_1:-68351743 Msa1209760:CDS
GGGTCTTGCAGATCTCTATG+AGG 0.598618 8_1:-68348262 Msa1209760:intron
AATTGAAGCTGTAACCTCCT+CGG 0.603379 8_1:+68349287 None:intergenic
AGAAGATGATGAACTCGAGA+AGG 0.607064 8_1:-68351398 Msa1209760:intron
GATGATAATAAAAGCGGGCA+GGG 0.610420 8_1:-68348282 Msa1209760:CDS
CAGAGGATATGGGAAATGCT+AGG 0.611431 8_1:-68351151 Msa1209760:intron
GAGGAGGTCTTTGATGGGAA+GGG 0.616212 8_1:-68347524 Msa1209760:CDS
TTTGTGTTGGCCATGAATGG+AGG 0.617832 8_1:+68352057 None:intergenic
ATTGGATGATGACGATGATG+AGG 0.622375 8_1:-68351665 Msa1209760:CDS
TTCTGGTGATGAAGATGACA+TGG 0.622499 8_1:-68349773 Msa1209760:CDS
CACAGGCAGAAAGGAAAAGG+AGG 0.626188 8_1:-68347475 Msa1209760:CDS
GTTTGAGATGGACGATGAGG+AGG 0.630319 8_1:-68351204 Msa1209760:CDS
TCAACGAGAAGCTCGTCCAA+TGG 0.633341 8_1:+68351892 None:intergenic
ATGGCCAACACAAACGACGC+CGG 0.634307 8_1:-68352048 Msa1209760:CDS
ACAAGTTGGAAAAGAAGGCA+AGG 0.636249 8_1:-68347198 Msa1209760:CDS
TTTAAGAATTCAGAATACAA+CGG 0.638459 8_1:+68346998 None:intergenic
TTTGGAGCGAGCAATGAAGG+TGG 0.639660 8_1:+68351991 None:intergenic
CAAATTCAACAGCAGAAGTG+AGG 0.641075 8_1:+68347090 None:intergenic
AGATAATTATGAGAAAGAGG+AGG 0.642904 8_1:-68351449 Msa1209760:CDS
TCCTCGGTGATTACAGGTGT+AGG 0.646195 8_1:+68349303 None:intergenic
GCAGCATCTGAAACAGCCAC+AGG 0.651350 8_1:+68347560 None:intergenic
GGAAGAAGCAGAACTTACAC+AGG 0.655960 8_1:-68347492 Msa1209760:CDS
CGACGAAGAGTGGACAAAAG+CGG 0.658718 8_1:+68351820 None:intergenic
ATGCAGGATGATAATAAAAG+CGG 0.663277 8_1:-68348288 Msa1209760:intron
CTTCTACCTATGAAAAGCAG+CGG 0.670312 8_1:-68349576 Msa1209760:CDS
GTACTGTGATGCAGCACGAG+CGG 0.682302 8_1:+68351951 None:intergenic
ATGACAATGGAGCAGAAGTG+GGG 0.688086 8_1:+68348090 None:intergenic
TACACCTGTAATCACCGAGG+AGG 0.714294 8_1:-68349301 Msa1209760:CDS
TGAGTTTGAGATGGACGATG+AGG 0.749868 8_1:-68351207 Msa1209760:CDS
ACCTACACCTGTAATCACCG+AGG 0.766281 8_1:-68349304 Msa1209760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTAATATCTTTATCTTT+TGG - chr8_1:68351068-68351087 Msa1209760:intron 10.0%
!!! ATTTAATATCTTTATCTTTT+GGG - chr8_1:68351069-68351088 Msa1209760:intron 10.0%
!! AATAAGAAAAGAAAATTTAA+AGG - chr8_1:68351624-68351643 Msa1209760:CDS 10.0%
!! AAAAGTTTCTTTATTATTAA+GGG + chr8_1:68351830-68351849 None:intergenic 10.0%
!! TAAAAGTTTCTTTATTATTA+AGG + chr8_1:68351831-68351850 None:intergenic 10.0%
!!! TAATAATAAAGAAACTTTTA+TGG - chr8_1:68351831-68351850 Msa1209760:CDS 10.0%
!! ATAAAAGAAAAAACAAACAA+TGG + chr8_1:68347737-68347756 None:intergenic 15.0%
!! AATTACAATAATAACAACAA+AGG + chr8_1:68348771-68348790 None:intergenic 15.0%
!! TTAATAATTTATTCATTCTC+TGG - chr8_1:68349028-68349047 Msa1209760:intron 15.0%
!! TAATAATTTATTCATTCTCT+GGG - chr8_1:68349029-68349048 Msa1209760:intron 15.0%
!!! TTATTTGTGTTATTTAAACA+AGG - chr8_1:68349890-68349909 Msa1209760:intron 15.0%
!!! TATTTGTGTTATTTAAACAA+GGG - chr8_1:68349891-68349910 Msa1209760:intron 15.0%
!! TAAAATTTCTGTACAAAATT+GGG - chr8_1:68349941-68349960 Msa1209760:intron 15.0%
!! TAATTACATAAAATATAGCT+AGG + chr8_1:68350738-68350757 None:intergenic 15.0%
!! AAATAAAATAAAAACATCTG+AGG + chr8_1:68350932-68350951 None:intergenic 15.0%
!! TTAGTTCGATAATGTTATAT+TGG - chr8_1:68347804-68347823 Msa1209760:intron 20.0%
!!! ATTAATACATTTGAAACAAG+AGG - chr8_1:68348326-68348345 Msa1209760:intron 20.0%
!!! GTGTTTTGTTATTATTTTGT+TGG + chr8_1:68348503-68348522 None:intergenic 20.0%
!! GTTTATCGACAATTTATAAT+CGG + chr8_1:68348591-68348610 None:intergenic 20.0%
!! TATTGTTAAGCTTATAGAAA+TGG + chr8_1:68348992-68349011 None:intergenic 20.0%
!! GTATTTATATAATTAAGCAG+TGG + chr8_1:68349135-68349154 None:intergenic 20.0%
!! ATAAAAAACAGGTACAAAAA+TGG + chr8_1:68349611-68349630 None:intergenic 20.0%
!!! TTTGTTATTGATTTTGTAAC+AGG - chr8_1:68349676-68349695 Msa1209760:intron 20.0%
!! GTAAAATTTCTGTACAAAAT+TGG - chr8_1:68349940-68349959 Msa1209760:intron 20.0%
!! TTAGTTAAAGGAAATAAACA+AGG + chr8_1:68350435-68350454 None:intergenic 20.0%
!! TTGTCAATTAAGAGATAATA+GGG + chr8_1:68351285-68351304 None:intergenic 20.0%
!! ATTGTCAATTAAGAGATAAT+AGG + chr8_1:68351286-68351305 None:intergenic 20.0%
!! TTATCTCTTAATTGACAATA+TGG - chr8_1:68351287-68351306 Msa1209760:intron 20.0%
!! GAAAAGAAAATTTAAAGGTA+TGG - chr8_1:68351629-68351648 Msa1209760:CDS 20.0%
!! TTAATATTCTTCACAAAATG+TGG + chr8_1:68352033-68352052 None:intergenic 20.0%
!! TTTAAGAATTCAGAATACAA+CGG + chr8_1:68352075-68352094 None:intergenic 20.0%
!!! TTTTAACAAACTGATTCAAC+CGG + chr8_1:68347276-68347295 None:intergenic 25.0%
!!! GAATCAGTTTGTTAAAAATC+CGG - chr8_1:68347279-68347298 Msa1209760:intron 25.0%
! GATGAAAAAGAGAAAGTTAA+AGG - chr8_1:68347535-68347554 Msa1209760:CDS 25.0%
!!! CACGTTTGTTATATTTACAT+AGG - chr8_1:68347836-68347855 Msa1209760:CDS 25.0%
!! TTTGTTATATTTACATAGGC+TGG - chr8_1:68347840-68347859 Msa1209760:CDS 25.0%
!! TAAGATTCAAACACTTTTGT+GGG + chr8_1:68347961-68347980 None:intergenic 25.0%
!! TTAAGATTCAAACACTTTTG+TGG + chr8_1:68347962-68347981 None:intergenic 25.0%
!! ATGTAGGTTAAAGCTTTTAT+TGG + chr8_1:68348134-68348153 None:intergenic 25.0%
! ATATTTACAGGTAGTTAAAC+TGG + chr8_1:68348161-68348180 None:intergenic 25.0%
!! GCTTTTAATGTTAATGCATA+TGG - chr8_1:68348245-68348264 Msa1209760:intron 25.0%
! TATGGTGATACATATGAAAT+TGG - chr8_1:68348263-68348282 Msa1209760:CDS 25.0%
! ATGGTGATACATATGAAATT+GGG - chr8_1:68348264-68348283 Msa1209760:CDS 25.0%
! TAAATGTTAAATACTTGCCA+TGG - chr8_1:68348384-68348403 Msa1209760:intron 25.0%
! TAATAACAAAACACTTGTTC+AGG - chr8_1:68348509-68348528 Msa1209760:intron 25.0%
! AGTGTAATTGATAAAAGTAG+AGG - chr8_1:68348624-68348643 Msa1209760:intron 25.0%
! AACTAGCGAAATTGTTAAAT+AGG - chr8_1:68348659-68348678 Msa1209760:intron 25.0%
!!! TACTATTTTTCCTCTAGTTT+TGG - chr8_1:68348916-68348935 Msa1209760:intron 25.0%
!! TTTTTCTTTGTATCTGTATG+TGG - chr8_1:68349180-68349199 Msa1209760:intron 25.0%
!! TTTTCTTTGTATCTGTATGT+GGG - chr8_1:68349181-68349200 Msa1209760:intron 25.0%
! TTTGGAGGTAAAAAAGAAAA+GGG - chr8_1:68349244-68349263 Msa1209760:intron 25.0%
! TAAACAACTGATTAACACAA+AGG + chr8_1:68349651-68349670 None:intergenic 25.0%
! ACTTCAAATGCACTATTTAT+GGG + chr8_1:68349719-68349738 None:intergenic 25.0%
! AACTTCAAATGCACTATTTA+TGG + chr8_1:68349720-68349739 None:intergenic 25.0%
! TGTATCCTATTACTAGAAAA+TGG - chr8_1:68349979-68349998 Msa1209760:intron 25.0%
! GTATCCTATTACTAGAAAAT+GGG - chr8_1:68349980-68349999 Msa1209760:intron 25.0%
! TATCCTATTACTAGAAAATG+GGG - chr8_1:68349981-68350000 Msa1209760:intron 25.0%
! AATTCATCAAGAATAAGTAG+TGG - chr8_1:68350231-68350250 Msa1209760:intron 25.0%
! AATCAGATAGCTAGTTAATT+AGG + chr8_1:68350463-68350482 None:intergenic 25.0%
! CTATTTATTTCAGTTGAACA+AGG + chr8_1:68350698-68350717 None:intergenic 25.0%
! TTGTATAGTGTATTCCAAAA+AGG + chr8_1:68350887-68350906 None:intergenic 25.0%
! CAAAGATGAACTAAAAAATG+AGG - chr8_1:68351004-68351023 Msa1209760:intron 25.0%
! AATTCAATTCAAGGCAAATA+AGG + chr8_1:68351336-68351355 None:intergenic 25.0%
!! AGAAAATTTAAAGGTATGGT+TGG - chr8_1:68351633-68351652 Msa1209760:CDS 25.0%
! AAAAGAAATTACCATCAACT+TGG + chr8_1:68351930-68351949 None:intergenic 25.0%
GTTGAAAAGAAGAAGACAAA+AGG - chr8_1:68347442-68347461 Msa1209760:intron 30.0%
GAAAAAGAGAAAGTTAAAGG+TGG - chr8_1:68347538-68347557 Msa1209760:CDS 30.0%
ATTGACTGAGTATTTAGAGA+AGG - chr8_1:68347594-68347613 Msa1209760:intron 30.0%
GGAAGATAATTATGAGAAAG+AGG - chr8_1:68347618-68347637 Msa1209760:intron 30.0%
AGATAATTATGAGAAAGAGG+AGG - chr8_1:68347621-68347640 Msa1209760:intron 30.0%
TTATGTTACATTGATCGAGT+AGG - chr8_1:68347762-68347781 Msa1209760:intron 30.0%
! AAGATTCAAACACTTTTGTG+GGG + chr8_1:68347960-68347979 None:intergenic 30.0%
! TACGATTCAAACACTTTTGT+GGG + chr8_1:68348030-68348049 None:intergenic 30.0%
! TTACGATTCAAACACTTTTG+TGG + chr8_1:68348031-68348050 None:intergenic 30.0%
CATTAGCATGTGATATTTAC+AGG + chr8_1:68348173-68348192 None:intergenic 30.0%
! ACATGCTAATGTCTTATTCT+CGG - chr8_1:68348182-68348201 Msa1209760:intron 30.0%
! AAACAAGAGGTATATGCTTA+TGG - chr8_1:68348339-68348358 Msa1209760:intron 30.0%
!!! ACAATTTCGCTAGTTTTTCT+TGG + chr8_1:68348654-68348673 None:intergenic 30.0%
CGAAATTGTTAAATAGGACT+GGG - chr8_1:68348665-68348684 Msa1209760:intron 30.0%
TGTAAGTTATGAAATTGGCT+GGG - chr8_1:68349107-68349126 Msa1209760:intron 30.0%
TTTCTTTGTATCTGTATGTG+GGG - chr8_1:68349182-68349201 Msa1209760:intron 30.0%
!!! TTTTTTCATTTGCTGCTTTC+AGG - chr8_1:68349209-68349228 Msa1209760:intron 30.0%
! CTTTGGAGGTAAAAAAGAAA+AGG - chr8_1:68349243-68349262 Msa1209760:intron 30.0%
ACTCATGTATGTAGAAGAAA+AGG - chr8_1:68349467-68349486 Msa1209760:intron 30.0%
!!! TACCTGTTTTTTATACGTTG+CGG - chr8_1:68349617-68349636 Msa1209760:intron 30.0%
! TTACCTCAACAATCTTTTTC+TGG + chr8_1:68349820-68349839 None:intergenic 30.0%
ACAAATAACACTGTGCATTA+TGG + chr8_1:68349878-68349897 None:intergenic 30.0%
!! TTGTGTTATTTAAACAAGGG+TGG - chr8_1:68349894-68349913 Msa1209760:intron 30.0%
!! TGTGTTATTTAAACAAGGGT+GGG - chr8_1:68349895-68349914 Msa1209760:intron 30.0%
!! TTTCCCCATTTTCTAGTAAT+AGG + chr8_1:68349987-68350006 None:intergenic 30.0%
TCCTTTGAATACCAAAACAA+TGG - chr8_1:68350015-68350034 Msa1209760:intron 30.0%
AAAATCAAACCCTCCATATT+TGG - chr8_1:68350059-68350078 Msa1209760:intron 30.0%
GAAAGAGATTAGAGATAGAA+GGG + chr8_1:68350208-68350227 None:intergenic 30.0%
TGAAAGAGATTAGAGATAGA+AGG + chr8_1:68350209-68350228 None:intergenic 30.0%
!! AATTAGGTTGGGTTAGTTAA+AGG + chr8_1:68350447-68350466 None:intergenic 30.0%
GATAGCTAGTTAATTAGGTT+GGG + chr8_1:68350458-68350477 None:intergenic 30.0%
AGATAGCTAGTTAATTAGGT+TGG + chr8_1:68350459-68350478 None:intergenic 30.0%
ATGCAGGATGATAATAAAAG+CGG - chr8_1:68350782-68350801 Msa1209760:intron 30.0%
TTCAACACTGGAAATTGTAT+TGG - chr8_1:68350851-68350870 Msa1209760:intron 30.0%
AGTTCATCTTTGAATGACAA+TGG + chr8_1:68350996-68351015 None:intergenic 30.0%
GGTATAAAGAAAGTTCGAAA+AGG + chr8_1:68351145-68351164 None:intergenic 30.0%
AGTAAAAGACACAAGATTCA+GGG + chr8_1:68351166-68351185 None:intergenic 30.0%
AAGTAAAAGACACAAGATTC+AGG + chr8_1:68351167-68351186 None:intergenic 30.0%
AGCAAAGTTGAAATGAGAAA+GGG + chr8_1:68351238-68351257 None:intergenic 30.0%
AACCTGTCAAATTCAATTCA+AGG + chr8_1:68351345-68351364 None:intergenic 30.0%
TTGAATTTGACAGGTTATAG+AGG - chr8_1:68351349-68351368 Msa1209760:intron 30.0%
CACTGTAAGTAACTAATAAG+TGG + chr8_1:68351463-68351482 None:intergenic 30.0%
! ACAGTGCATTATATTTTCCA+TGG - chr8_1:68351477-68351496 Msa1209760:CDS 30.0%
! CAGTGCATTATATTTTCCAT+GGG - chr8_1:68351478-68351497 Msa1209760:CDS 30.0%
! ATTTAAAGGTATGGTTGGTT+AGG - chr8_1:68351638-68351657 Msa1209760:CDS 30.0%
TAACCAACATGTCTAGATAA+CGG + chr8_1:68351680-68351699 None:intergenic 30.0%
AACTTGCATTAAGACATGTA+TGG + chr8_1:68351720-68351739 None:intergenic 30.0%
TGGTATTTAAGAAAATGCTG+AGG + chr8_1:68351780-68351799 None:intergenic 30.0%
! AGTAAACAAGTTGGAAAAGA+AGG - chr8_1:68351867-68351886 Msa1209760:CDS 30.0%
TTAAACTGTGCAATCTCTTC+CGG + chr8_1:68347301-68347320 None:intergenic 35.0%
! TTTAAGGTTCCTTTGGATGA+TGG - chr8_1:68347316-68347335 Msa1209760:intron 35.0%
TTAAGGTTCCTTTGGATGAT+GGG - chr8_1:68347317-68347336 Msa1209760:intron 35.0%
!! AGAAAGCGATGATTTTGATG+AGG - chr8_1:68347381-68347400 Msa1209760:intron 35.0%
!! CGATGATTTTGATGAGGAAT+TGG - chr8_1:68347387-68347406 Msa1209760:intron 35.0%
! GATGATGAGGATGATTTTGA+AGG - chr8_1:68347418-68347437 Msa1209760:intron 35.0%
GAAAAGAAGAAGACAAAAGG+AGG - chr8_1:68347445-68347464 Msa1209760:intron 35.0%
AAAGAGAAAGTTAAAGGTGG+TGG - chr8_1:68347541-68347560 Msa1209760:CDS 35.0%
TTACATTGATCGAGTAGGTT+TGG - chr8_1:68347767-68347786 Msa1209760:intron 35.0%
TGAAGATGAAGAAGATGAAG+AGG - chr8_1:68347896-68347915 Msa1209760:intron 35.0%
! AGATTCAAACACTTTTGTGG+GGG + chr8_1:68347959-68347978 None:intergenic 35.0%
TCAAGCTTGCAAGTTAATCT+AGG - chr8_1:68347988-68348007 Msa1209760:intron 35.0%
! ACGATTCAAACACTTTTGTG+GGG + chr8_1:68348029-68348048 None:intergenic 35.0%
TCACTTGTGTGTCAAAGAAA+TGG - chr8_1:68348107-68348126 Msa1209760:CDS 35.0%
TAGTTAAACTGGAGTGATGT+AGG + chr8_1:68348150-68348169 None:intergenic 35.0%
! AAACAGGAGGTATATGCATA+TGG - chr8_1:68348300-68348319 Msa1209760:intron 35.0%
GCGAAATTGTTAAATAGGAC+TGG - chr8_1:68348664-68348683 Msa1209760:intron 35.0%
AAATGATCTCGTTGAAGACT+TGG - chr8_1:68348692-68348711 Msa1209760:intron 35.0%
AACAGCAACGTCAATCATAT+CGG + chr8_1:68348731-68348750 None:intergenic 35.0%
CAAAAGGAATCCAAAACTAG+AGG + chr8_1:68348929-68348948 None:intergenic 35.0%
ACTCAAGATGAAACTGCAAA+AGG + chr8_1:68348945-68348964 None:intergenic 35.0%
! GAGTACTGTATTTAACTGAG+TGG - chr8_1:68348961-68348980 Msa1209760:intron 35.0%
CCAATTTCATAACTTACAGC+TGG + chr8_1:68349105-68349124 None:intergenic 35.0%
CCAGCTGTAAGTTATGAAAT+TGG - chr8_1:68349102-68349121 Msa1209760:intron 35.0%
CTGTAAGTTATGAAATTGGC+TGG - chr8_1:68349106-68349125 Msa1209760:intron 35.0%
TTCAGGTATGAAGACTTCTT+TGG - chr8_1:68349226-68349245 Msa1209760:intron 35.0%
GATCAATTGCTTGAAGTTTC+TGG - chr8_1:68349280-68349299 Msa1209760:CDS 35.0%
TCAATCAAAGATAGAGCTGA+TGG - chr8_1:68349525-68349544 Msa1209760:CDS 35.0%
CTAATGTAGAGCCAAAAACT+TGG - chr8_1:68349554-68349573 Msa1209760:CDS 35.0%
ATCCGCAACGTATAAAAAAC+AGG + chr8_1:68349622-68349641 None:intergenic 35.0%
! TTTTTATACGTTGCGGATAC+AGG - chr8_1:68349624-68349643 Msa1209760:intron 35.0%
GATCCAGAAAAAGATTGTTG+AGG - chr8_1:68349814-68349833 Msa1209760:CDS 35.0%
! ATTATTATCCTGTGCTGACA+TGG - chr8_1:68349840-68349859 Msa1209760:CDS 35.0%
AATAACACTGTGCATTATGG+TGG + chr8_1:68349875-68349894 None:intergenic 35.0%
TGTACAAAATTGGGTGTGAT+AGG - chr8_1:68349950-68349969 Msa1209760:intron 35.0%
!!! GCCATTGTTTTGGTATTCAA+AGG + chr8_1:68350019-68350038 None:intergenic 35.0%
GTTGACAAATATTTCAACGC+AGG + chr8_1:68350157-68350176 None:intergenic 35.0%
TAGAAGGGTAAGATACTTGT+GGG + chr8_1:68350193-68350212 None:intergenic 35.0%
ATAGAAGGGTAAGATACTTG+TGG + chr8_1:68350194-68350213 None:intergenic 35.0%
AGAACAATAACAGCTCTTTG+AGG - chr8_1:68350316-68350335 Msa1209760:intron 35.0%
GAACAATAACAGCTCTTTGA+GGG - chr8_1:68350317-68350336 Msa1209760:intron 35.0%
!! ATTTAAGGCCTTTTCGCTTT+TGG + chr8_1:68350354-68350373 None:intergenic 35.0%
CTTGTTCATCGAGTGATTTA+AGG + chr8_1:68350369-68350388 None:intergenic 35.0%
AGACTTGAAAACAGAAAGGA+GGG + chr8_1:68350408-68350427 None:intergenic 35.0%
CAAGAGACTTGAAAACAGAA+AGG + chr8_1:68350412-68350431 None:intergenic 35.0%
! AATTACATAAACGCGCTGAT+AGG + chr8_1:68350502-68350521 None:intergenic 35.0%
TCAGCGCGTTTATGTAATTA+TGG - chr8_1:68350503-68350522 Msa1209760:intron 35.0%
CATAAGTCTCTTGCATTACT+TGG + chr8_1:68350537-68350556 None:intergenic 35.0%
! ACCAATTGTTTAACTTCTCG+AGG + chr8_1:68350672-68350691 None:intergenic 35.0%
AAATTATTGCCATGTGATGC+AGG - chr8_1:68350766-68350785 Msa1209760:intron 35.0%
TATTATCATCCTGCATCACA+TGG + chr8_1:68350778-68350797 None:intergenic 35.0%
TGCAGGATGATAATAAAAGC+GGG - chr8_1:68350783-68350802 Msa1209760:intron 35.0%
TGAAACACAGTCGAGAAATA+CGG + chr8_1:68350835-68350854 None:intergenic 35.0%
AGTGTATTCCAAAAAGGAAC+TGG + chr8_1:68350881-68350900 None:intergenic 35.0%
! TGTGTCTTTTACTTGTGATC+AGG - chr8_1:68351173-68351192 Msa1209760:CDS 35.0%
! TAAGAAAATCTGTCTGAAGC+TGG - chr8_1:68351209-68351228 Msa1209760:CDS 35.0%
GAGCAAAGTTGAAATGAGAA+AGG + chr8_1:68351239-68351258 None:intergenic 35.0%
! TGTTGATGTCATACAGGTTT+TGG + chr8_1:68351261-68351280 None:intergenic 35.0%
ATTCAAGGCAAATAAGGAGA+CGG + chr8_1:68351330-68351349 None:intergenic 35.0%
TGCCTTGAATTGAATTTGAC+AGG - chr8_1:68351340-68351359 Msa1209760:intron 35.0%
AACCAACATGTCTAGATAAC+GGG + chr8_1:68351679-68351698 None:intergenic 35.0%
! ATCTAGACATGTTGGTTATG+TGG - chr8_1:68351682-68351701 Msa1209760:CDS 35.0%
! AACTTTTATGGTTACAGCTG+AGG - chr8_1:68351843-68351862 Msa1209760:CDS 35.0%
ATGCAGCGTTTCTCATATAA+GGG + chr8_1:68351957-68351976 None:intergenic 35.0%
AATGCAGCGTTTCTCATATA+AGG + chr8_1:68351958-68351977 None:intergenic 35.0%
!! AATGGTGATTTTGGGGAGAA+GGG + chr8_1:68347163-68347182 None:intergenic 40.0%
GGAAGAGATTGCACAGTTTA+AGG - chr8_1:68347300-68347319 Msa1209760:intron 40.0%
! TGCACAGTTTAAGGTTCCTT+TGG - chr8_1:68347309-68347328 Msa1209760:intron 40.0%
!! TTTGGATGATGGGAAGAAGA+CGG - chr8_1:68347327-68347346 Msa1209760:intron 40.0%
! ATTGGATGATGACGATGATG+AGG - chr8_1:68347405-68347424 Msa1209760:intron 40.0%
AAGACAAAAGGAGGAAGTGA+AGG - chr8_1:68347454-68347473 Msa1209760:CDS 40.0%
TGATGAAGATGAAGACGTTG+AGG - chr8_1:68347501-68347520 Msa1209760:CDS 40.0%
GATGAAGATGAAGACGTTGA+GGG - chr8_1:68347502-68347521 Msa1209760:CDS 40.0%
!! AGTTAAAGGTGGTGGAATTG+AGG - chr8_1:68347549-68347568 Msa1209760:CDS 40.0%
GACTGAGTATTTAGAGAAGG+AGG - chr8_1:68347597-68347616 Msa1209760:intron 40.0%
TTATGAGAAAGAGGAGGAGA+TGG - chr8_1:68347627-68347646 Msa1209760:intron 40.0%
AGAAGATGATGAACTCGAGA+AGG - chr8_1:68347672-68347691 Msa1209760:intron 40.0%
GAGATTGATTGCTCTTTGCT+TGG - chr8_1:68347696-68347715 Msa1209760:CDS 40.0%
!! TTGCTTGGCTTGGTTGTTAT+TGG - chr8_1:68347711-68347730 Msa1209760:CDS 40.0%
! GATTCAAACACTTTTGTGGG+GGG + chr8_1:68347958-68347977 None:intergenic 40.0%
! GATTCAAACACTTTTGTGGG+GGG + chr8_1:68347958-68347977 None:intergenic 40.0%
! CGATTCAAACACTTTTGTGG+GGG + chr8_1:68348028-68348047 None:intergenic 40.0%
! CTTGTGGTAATGCTTGAACA+AGG - chr8_1:68348214-68348233 Msa1209760:intron 40.0%
ACTTTGATGCATGAAACAGG+AGG - chr8_1:68348287-68348306 Msa1209760:intron 40.0%
ATGACAAACGTGTAGTATCG+TGG + chr8_1:68348462-68348481 None:intergenic 40.0%
AACACTTGTTCAGGAACAGA+TGG - chr8_1:68348518-68348537 Msa1209760:intron 40.0%
AGGAACAGATGGTAGAATCA+TGG - chr8_1:68348529-68348548 Msa1209760:intron 40.0%
ACAGCAACGTCAATCATATC+GGG + chr8_1:68348730-68348749 None:intergenic 40.0%
TAACAACAAAGGTCCTTCAC+CGG + chr8_1:68348760-68348779 None:intergenic 40.0%
TTAGTCTCAATTGCAGCTTG+AGG - chr8_1:68348789-68348808 Msa1209760:intron 40.0%
GAAACTGAAGGAACACAAGT+AGG - chr8_1:68348811-68348830 Msa1209760:intron 40.0%
AGGTATGAAGACTTCTTTGG+AGG - chr8_1:68349229-68349248 Msa1209760:intron 40.0%
! TTCTGGTGATGAAGATGACA+TGG - chr8_1:68349297-68349316 Msa1209760:CDS 40.0%
TGACATGGAATCAGACAAAC+AGG - chr8_1:68349312-68349331 Msa1209760:CDS 40.0%
CTTCTACCTATGAAAAGCAG+CGG - chr8_1:68349494-68349513 Msa1209760:intron 40.0%
TTCTACCTATGAAAAGCAGC+GGG - chr8_1:68349495-68349514 Msa1209760:intron 40.0%
!!! TTTTTCCCGCTGCTTTTCAT+AGG + chr8_1:68349503-68349522 None:intergenic 40.0%
CCAAAAACTTGGACTATGCA+GGG - chr8_1:68349565-68349584 Msa1209760:CDS 40.0%
AATTGAAGCTGTAACCTCCT+CGG + chr8_1:68349786-68349805 None:intergenic 40.0%
! TTGAAGAGCTGCCATTGTTT+TGG + chr8_1:68350029-68350048 None:intergenic 40.0%
AAAACAATGGCAGCTCTTCA+AGG - chr8_1:68350028-68350047 Msa1209760:intron 40.0%
AAACAATGGCAGCTCTTCAA+GGG - chr8_1:68350029-68350048 Msa1209760:intron 40.0%
CACATGGTACCAAATATGGA+GGG + chr8_1:68350071-68350090 None:intergenic 40.0%
TCACATGGTACCAAATATGG+AGG + chr8_1:68350072-68350091 None:intergenic 40.0%
TCCATATTTGGTACCATGTG+AGG - chr8_1:68350071-68350090 Msa1209760:intron 40.0%
CCATATTTGGTACCATGTGA+GGG - chr8_1:68350072-68350091 Msa1209760:intron 40.0%
GACAAATATTTCAACGCAGG+AGG + chr8_1:68350154-68350173 None:intergenic 40.0%
ACTTGTGGGTAGCTGATAAA+AGG + chr8_1:68350179-68350198 None:intergenic 40.0%
GAGCTGTTATTGTTCTCTTC+TGG + chr8_1:68350312-68350331 None:intergenic 40.0%
ACCTACATCCAAAAGCGAAA+AGG - chr8_1:68350343-68350362 Msa1209760:intron 40.0%
GAGACTTGAAAACAGAAAGG+AGG + chr8_1:68350409-68350428 None:intergenic 40.0%
TTTACACCCGTGTTTCTTTC+AGG - chr8_1:68350599-68350618 Msa1209760:intron 40.0%
TTACACCCGTGTTTCTTTCA+GGG - chr8_1:68350600-68350619 Msa1209760:intron 40.0%
AAAAGCCCCTGAAAGAAACA+CGG + chr8_1:68350609-68350628 None:intergenic 40.0%
! GCTTTTTAACGACGTGCAAA+GGG - chr8_1:68350623-68350642 Msa1209760:intron 40.0%
GCCTCGAGAAGTTAAACAAT+TGG - chr8_1:68350668-68350687 Msa1209760:intron 40.0%
GATGATAATAAAAGCGGGCA+GGG - chr8_1:68350788-68350807 Msa1209760:intron 40.0%
GTATTCCAAAAAGGAACTGG+AGG + chr8_1:68350878-68350897 None:intergenic 40.0%
AATGACAATGGAGCAGAAGT+GGG + chr8_1:68350984-68351003 None:intergenic 40.0%
TTCTTAAGCACATGCAGTAC+CGG - chr8_1:68351102-68351121 Msa1209760:intron 40.0%
TAGGGATGTTGATGTCATAC+AGG + chr8_1:68351267-68351286 None:intergenic 40.0%
TTCAAGGCAAATAAGGAGAC+GGG + chr8_1:68351329-68351348 None:intergenic 40.0%
AGCAGGTACATTTGTTTGGA+AGG + chr8_1:68351381-68351400 None:intergenic 40.0%
TTACACAGGCAGAAAGGAAA+AGG - chr8_1:68351592-68351611 Msa1209760:CDS 40.0%
ATGAAGAGATCTTGTGTGTG+TGG + chr8_1:68351800-68351819 None:intergenic 40.0%
! ACAAGTTGGAAAAGAAGGCA+AGG - chr8_1:68351872-68351891 Msa1209760:CDS 40.0%
AAGGCAGACAATGCAATTTC+TGG - chr8_1:68351904-68351923 Msa1209760:CDS 40.0%
CAAATTCAACAGCAGAAGTG+AGG + chr8_1:68351983-68352002 None:intergenic 40.0%
GTTTCTGTGTTGCGTAAACT+TGG - chr8_1:68352099-68352118 Msa1209760:five_prime_UTR 40.0%
! TCGGTGGTGAATGGCTTTTA+GGG + chr8_1:68346979-68346998 None:intergenic 45.0%
! TTCGGTGGTGAATGGCTTTT+AGG + chr8_1:68346980-68346999 None:intergenic 45.0%
AACAGAGCAACCTCCATTCA+TGG - chr8_1:68347003-68347022 Msa1209760:CDS 45.0%
! TTTGTGTTGGCCATGAATGG+AGG + chr8_1:68347016-68347035 None:intergenic 45.0%
! TCGTTTGTGTTGGCCATGAA+TGG + chr8_1:68347019-68347038 None:intergenic 45.0%
!! GTGGATCGATTTGTTGCAGA+CGG + chr8_1:68347063-68347082 None:intergenic 45.0%
AGGGTCTGAGAGTAGTGAAT+AGG + chr8_1:68347144-68347163 None:intergenic 45.0%
!! CAATGGTGATTTTGGGGAGA+AGG + chr8_1:68347164-68347183 None:intergenic 45.0%
CTTCTCCCCAAAATCACCAT+TGG - chr8_1:68347162-68347181 Msa1209760:CDS 45.0%
! CTCGTCCAATGGTGATTTTG+GGG + chr8_1:68347170-68347189 None:intergenic 45.0%
! GCTCGTCCAATGGTGATTTT+GGG + chr8_1:68347171-68347190 None:intergenic 45.0%
! AGCTCGTCCAATGGTGATTT+TGG + chr8_1:68347172-68347191 None:intergenic 45.0%
GTTACGATGCTGAGCAGATT+TGG - chr8_1:68347203-68347222 Msa1209760:CDS 45.0%
GTCTTCTTCCCATCATCCAA+AGG + chr8_1:68347328-68347347 None:intergenic 45.0%
GACGGAGATAAAGAAGAGAG+TGG - chr8_1:68347345-68347364 Msa1209760:intron 45.0%
GAAGAGAGTGGAGTTAGAAG+AGG - chr8_1:68347357-68347376 Msa1209760:intron 45.0%
TGATTGCTCTTTGCTTGGCT+TGG - chr8_1:68347701-68347720 Msa1209760:CDS 45.0%
ATAGGCTGGTGAGTTTGAGA+TGG - chr8_1:68347854-68347873 Msa1209760:CDS 45.0%
! TGAGTTTGAGATGGACGATG+AGG - chr8_1:68347863-68347882 Msa1209760:CDS 45.0%
TGAAGAAGATGAAGAGGCAG+AGG - chr8_1:68347902-68347921 Msa1209760:intron 45.0%
AGATGAAGAGGCAGAGGATA+TGG - chr8_1:68347908-68347927 Msa1209760:intron 45.0%
GATGAAGAGGCAGAGGATAT+GGG - chr8_1:68347909-68347928 Msa1209760:intron 45.0%
CAGAGGATATGGGAAATGCT+AGG - chr8_1:68347919-68347938 Msa1209760:intron 45.0%
TTCTCGGATAAGCACTCTTG+TGG - chr8_1:68348198-68348217 Msa1209760:intron 45.0%
GGGACTTTGATGCATGAAAC+AGG - chr8_1:68348284-68348303 Msa1209760:CDS 45.0%
AACGTGTAGTATCGTGGTGA+GGG + chr8_1:68348456-68348475 None:intergenic 45.0%
AAACGTGTAGTATCGTGGTG+AGG + chr8_1:68348457-68348476 None:intergenic 45.0%
GTCATGAAGTGAGAGCAAGA+TGG - chr8_1:68348477-68348496 Msa1209760:intron 45.0%
TTGCAGCTTGAGGAAACTGA+AGG - chr8_1:68348799-68348818 Msa1209760:intron 45.0%
CAGCTGGAGTCAACATTTAC+AGG + chr8_1:68349089-68349108 None:intergenic 45.0%
GCCAAAAACTTGGACTATGC+AGG - chr8_1:68349564-68349583 Msa1209760:CDS 45.0%
! CCCTGCATAGTCCAAGTTTT+TGG + chr8_1:68349568-68349587 None:intergenic 45.0%
GGAGGTTACAGCTTCAATTG+AGG - chr8_1:68349787-68349806 Msa1209760:CDS 45.0%
CCCTCACATGGTACCAAATA+TGG + chr8_1:68350075-68350094 None:intergenic 45.0%
ACATACCACAAGTTGTGCAG+TGG + chr8_1:68350111-68350130 None:intergenic 45.0%
AGTGGATCCCTCATTCTTGT+TGG - chr8_1:68350249-68350268 Msa1209760:intron 45.0%
GTGGATCCCTCATTCTTGTT+GGG - chr8_1:68350250-68350269 Msa1209760:intron 45.0%
TCCAAGCCCAACAAGAATGA+GGG + chr8_1:68350259-68350278 None:intergenic 45.0%
TTCCAAGCCCAACAAGAATG+AGG + chr8_1:68350260-68350279 None:intergenic 45.0%
!! GCCTTTTCGCTTTTGGATGT+AGG + chr8_1:68350347-68350366 None:intergenic 45.0%
TACACCCGTGTTTCTTTCAG+GGG - chr8_1:68350601-68350620 Msa1209760:intron 45.0%
AAAGCCCCTGAAAGAAACAC+GGG + chr8_1:68350608-68350627 None:intergenic 45.0%
! GGCTTTTTAACGACGTGCAA+AGG - chr8_1:68350622-68350641 Msa1209760:intron 45.0%
GGATGATAATAAAAGCGGGC+AGG - chr8_1:68350787-68350806 Msa1209760:intron 45.0%
TCTCGACTGTGTTTCAACAC+TGG - chr8_1:68350839-68350858 Msa1209760:intron 45.0%
! TTGGACCTCCAGTTCCTTTT+TGG - chr8_1:68350870-68350889 Msa1209760:intron 45.0%
ATGACAATGGAGCAGAAGTG+GGG + chr8_1:68350983-68351002 None:intergenic 45.0%
GAATGACAATGGAGCAGAAG+TGG + chr8_1:68350985-68351004 None:intergenic 45.0%
CCAGAGCAGGTACATTTGTT+TGG + chr8_1:68351385-68351404 None:intergenic 45.0%
CCAAACAAATGTACCTGCTC+TGG - chr8_1:68351382-68351401 Msa1209760:intron 45.0%
AAATGTACCTGCTCTGGCAA+TGG - chr8_1:68351388-68351407 Msa1209760:intron 45.0%
TGTTTCAGATGCTGCTATGC+TGG - chr8_1:68351518-68351537 Msa1209760:CDS 45.0%
TGATGGGAAGGGTGATGTTA+AGG - chr8_1:68351557-68351576 Msa1209760:CDS 45.0%
GGAAGAAGCAGAACTTACAC+AGG - chr8_1:68351578-68351597 Msa1209760:CDS 45.0%
CAGAACTTACACAGGCAGAA+AGG - chr8_1:68351586-68351605 Msa1209760:CDS 45.0%
TGCCCGTTATCTAGACATGT+TGG - chr8_1:68351674-68351693 Msa1209760:CDS 45.0%
AGCTGAGGCAGTAAACAAGT+TGG - chr8_1:68351858-68351877 Msa1209760:CDS 45.0%
GTTGGAAAAGAAGGCAAGGT+CGG - chr8_1:68351876-68351895 Msa1209760:CDS 45.0%
!! GCAATTTCTGGCCAAGTTGA+TGG - chr8_1:68351916-68351935 Msa1209760:CDS 45.0%
CTGTTCGTTTCGGTGGTGAA+TGG + chr8_1:68346988-68347007 None:intergenic 50.0%
GGAGGTTGCTCTGTTCGTTT+CGG + chr8_1:68346998-68347017 None:intergenic 50.0%
!! GATTTGTTGCAGACGGCGTA+AGG + chr8_1:68347056-68347075 None:intergenic 50.0%
! TTTGGAGCGAGCAATGAAGG+TGG + chr8_1:68347082-68347101 None:intergenic 50.0%
ATTGCTCGCTCCAAACCCAT+CGG - chr8_1:68347087-68347106 Msa1209760:CDS 50.0%
! GTTTCGGAAACCGATGGGTT+TGG + chr8_1:68347100-68347119 None:intergenic 50.0%
TCAACGAGAAGCTCGTCCAA+TGG + chr8_1:68347181-68347200 None:intergenic 50.0%
TTGGACGAGCTTCTCGTTGA+TGG - chr8_1:68347181-68347200 Msa1209760:CDS 50.0%
CGACGAAGAGTGGACAAAAG+CGG + chr8_1:68347253-68347272 None:intergenic 50.0%
! TTTTGTCCACTCTTCGTCGC+CGG - chr8_1:68347254-68347273 Msa1209760:intron 50.0%
TGAAGACGTTGAGGGAGATG+AGG - chr8_1:68347510-68347529 Msa1209760:CDS 50.0%
! GTTTGAGATGGACGATGAGG+AGG - chr8_1:68347866-68347885 Msa1209760:CDS 50.0%
TGTCACGCAGTGGTGTTTAC+TGG - chr8_1:68348412-68348431 Msa1209760:CDS 50.0%
ACGTGTAGTATCGTGGTGAG+GGG + chr8_1:68348455-68348474 None:intergenic 50.0%
! TGACGTTGCTGTTACCACTC+CGG - chr8_1:68348738-68348757 Msa1209760:intron 50.0%
AACTTGGACTATGCAGGGTG+AGG - chr8_1:68349570-68349589 Msa1209760:CDS 50.0%
ACCTACACCTGTAATCACCG+AGG - chr8_1:68349766-68349785 Msa1209760:CDS 50.0%
TCCTCGGTGATTACAGGTGT+AGG + chr8_1:68349770-68349789 None:intergenic 50.0%
TACACCTGTAATCACCGAGG+AGG - chr8_1:68349769-68349788 Msa1209760:CDS 50.0%
GTAACCTCCTCGGTGATTAC+AGG + chr8_1:68349776-68349795 None:intergenic 50.0%
! TATCCTGTGCTGACATGGCT+TGG - chr8_1:68349845-68349864 Msa1209760:intron 50.0%
! ATCCTGTGCTGACATGGCTT+GGG - chr8_1:68349846-68349865 Msa1209760:intron 50.0%
ACAAGGGTGGGAGCTACATA+TGG - chr8_1:68349907-68349926 Msa1209760:intron 50.0%
TTTGGTACCATGTGAGGGTC+TGG - chr8_1:68350077-68350096 Msa1209760:intron 50.0%
CAAGTTGTGCAGTGGATGAG+CGG + chr8_1:68350103-68350122 None:intergenic 50.0%
CTCATCCACTGCACAACTTG+TGG - chr8_1:68350103-68350122 Msa1209760:intron 50.0%
TCCCTCATTCTTGTTGGGCT+TGG - chr8_1:68350255-68350274 Msa1209760:intron 50.0%
GGGTCTTGCAGATCTCTATG+AGG - chr8_1:68350808-68350827 Msa1209760:intron 50.0%
CTCCTGAGGAGGTCTTTGAT+GGG - chr8_1:68351541-68351560 Msa1209760:CDS 50.0%
TTCCCATCAAAGACCTCCTC+AGG + chr8_1:68351546-68351565 None:intergenic 50.0%
TGAGGAGGTCTTTGATGGGA+AGG - chr8_1:68351545-68351564 Msa1209760:CDS 50.0%
GAGGAGGTCTTTGATGGGAA+GGG - chr8_1:68351546-68351565 Msa1209760:CDS 50.0%
CACAGGCAGAAAGGAAAAGG+AGG - chr8_1:68351595-68351614 Msa1209760:CDS 50.0%
GAAGGCAAGGTCGGAAAAGA+AGG - chr8_1:68351885-68351904 Msa1209760:CDS 50.0%
GGTTGCTCTGTTCGTTTCGG+TGG + chr8_1:68346995-68347014 None:intergenic 55.0%
ATGGCCAACACAAACGACGC+CGG - chr8_1:68347022-68347041 Msa1209760:CDS 55.0%
! GGGTTTGGAGCGAGCAATGA+AGG + chr8_1:68347085-68347104 None:intergenic 55.0%
GAGCGGTTTCGGAAACCGAT+GGG + chr8_1:68347105-68347124 None:intergenic 55.0%
TGATGCAGCACGAGCGGTTT+CGG + chr8_1:68347116-68347135 None:intergenic 55.0%
GTACTGTGATGCAGCACGAG+CGG + chr8_1:68347122-68347141 None:intergenic 55.0%
ATTCAACCGGCGACGAAGAG+TGG + chr8_1:68347263-68347282 None:intergenic 55.0%
AGACGTTGAGGGAGATGAGG+AGG - chr8_1:68347513-68347532 Msa1209760:CDS 55.0%
CACTGCGTGACAGATTGCCA+TGG + chr8_1:68348404-68348423 None:intergenic 55.0%
CATGGCAATCTGTCACGCAG+TGG - chr8_1:68348402-68348421 Msa1209760:intron 55.0%
CGTGTAGTATCGTGGTGAGG+GGG + chr8_1:68348454-68348473 None:intergenic 55.0%
TGCTGTTACCACTCCGGTGA+AGG - chr8_1:68348744-68348763 Msa1209760:intron 55.0%
ACAAAGGTCCTTCACCGGAG+TGG + chr8_1:68348755-68348774 None:intergenic 55.0%
GGCGCTTTCGATGGCAACTT+AGG + chr8_1:68350651-68350670 None:intergenic 55.0%
! ACTTCTCGAGGCGCTTTCGA+TGG + chr8_1:68350660-68350679 None:intergenic 55.0%
!! AAGCACATGCAGTACCGGTC+TGG - chr8_1:68351107-68351126 Msa1209760:intron 55.0%
GGATAGCCACACAACCAGAC+CGG + chr8_1:68351124-68351143 None:intergenic 55.0%
ACCTGCTCTGGCAATGGAAG+AGG - chr8_1:68351394-68351413 Msa1209760:intron 55.0%
ACCTCTTCCATTGCCAGAGC+AGG + chr8_1:68351398-68351417 None:intergenic 55.0%
! GCAGCATCTGAAACAGCCAC+AGG + chr8_1:68351513-68351532 None:intergenic 55.0%
GCTCCTGAGGAGGTCTTTGA+TGG - chr8_1:68351540-68351559 Msa1209760:CDS 55.0%
TACGCCGGCGTCGTTTGTGT+TGG + chr8_1:68347029-68347048 None:intergenic 60.0%
ACGGCGTAAGGCTTCTACGC+CGG + chr8_1:68347044-68347063 None:intergenic 60.0%
CGAGCGGTTTCGGAAACCGA+TGG + chr8_1:68347106-68347125 None:intergenic 60.0%
AGCCCAAGCCATGTCAGCAC+AGG + chr8_1:68349851-68349870 None:intergenic 60.0%
!! GCAGTACCGGTCTGGTTGTG+TGG - chr8_1:68351115-68351134 Msa1209760:intron 60.0%
CCACAGGAGCAATCTGCCCA+TGG + chr8_1:68351497-68351516 None:intergenic 60.0%
CCATGGGCAGATTGCTCCTG+TGG - chr8_1:68351494-68351513 Msa1209760:CDS 60.0%
!! TGCTGCTATGCTGGCTCCTG+AGG - chr8_1:68351527-68351546 Msa1209760:CDS 60.0%
!! TGCTATGCTGGCTCCTGAGG+AGG - chr8_1:68351530-68351549 Msa1209760:CDS 60.0%
TGAGCGGCCAGACCCTCACA+TGG + chr8_1:68350087-68350106 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 68346955 68352137 68346955 ID=Msa1209760;Name=Msa1209760
chr8_1 mRNA 68346955 68352137 68346955 ID=Msa1209760-mRNA-1;Parent=Msa1209760;Name=Msa1209760-mRNA-1;_AED=0.15;_eAED=0.15;_QI=67|1|0.91|1|1|1|12|0|610
chr8_1 exon 68346955 68347232 68346955 ID=Msa1209760-mRNA-1:exon:22717;Parent=Msa1209760-mRNA-1
chr8_1 exon 68347447 68347588 68347447 ID=Msa1209760-mRNA-1:exon:22716;Parent=Msa1209760-mRNA-1
chr8_1 exon 68347677 68347730 68347677 ID=Msa1209760-mRNA-1:exon:22715;Parent=Msa1209760-mRNA-1
chr8_1 exon 68347826 68347897 68347826 ID=Msa1209760-mRNA-1:exon:22714;Parent=Msa1209760-mRNA-1
chr8_1 exon 68348067 68348135 68348067 ID=Msa1209760-mRNA-1:exon:22713;Parent=Msa1209760-mRNA-1
chr8_1 exon 68348263 68348304 68348263 ID=Msa1209760-mRNA-1:exon:22712;Parent=Msa1209760-mRNA-1
chr8_1 exon 68348403 68348471 68348403 ID=Msa1209760-mRNA-1:exon:22711;Parent=Msa1209760-mRNA-1
chr8_1 exon 68349257 68349394 68349257 ID=Msa1209760-mRNA-1:exon:22710;Parent=Msa1209760-mRNA-1
chr8_1 exon 68349501 68349611 68349501 ID=Msa1209760-mRNA-1:exon:22709;Parent=Msa1209760-mRNA-1
chr8_1 exon 68349759 68349861 68349759 ID=Msa1209760-mRNA-1:exon:22708;Parent=Msa1209760-mRNA-1
chr8_1 exon 68351152 68351234 68351152 ID=Msa1209760-mRNA-1:exon:22707;Parent=Msa1209760-mRNA-1
chr8_1 exon 68351399 68352137 68351399 ID=Msa1209760-mRNA-1:exon:22706;Parent=Msa1209760-mRNA-1
chr8_1 five_prime_UTR 68352071 68352137 68352071 ID=Msa1209760-mRNA-1:five_prime_utr;Parent=Msa1209760-mRNA-1
chr8_1 CDS 68351399 68352070 68351399 ID=Msa1209760-mRNA-1:cds;Parent=Msa1209760-mRNA-1
chr8_1 CDS 68351152 68351234 68351152 ID=Msa1209760-mRNA-1:cds;Parent=Msa1209760-mRNA-1
chr8_1 CDS 68349759 68349861 68349759 ID=Msa1209760-mRNA-1:cds;Parent=Msa1209760-mRNA-1
chr8_1 CDS 68349501 68349611 68349501 ID=Msa1209760-mRNA-1:cds;Parent=Msa1209760-mRNA-1
chr8_1 CDS 68349257 68349394 68349257 ID=Msa1209760-mRNA-1:cds;Parent=Msa1209760-mRNA-1
chr8_1 CDS 68348403 68348471 68348403 ID=Msa1209760-mRNA-1:cds;Parent=Msa1209760-mRNA-1
chr8_1 CDS 68348263 68348304 68348263 ID=Msa1209760-mRNA-1:cds;Parent=Msa1209760-mRNA-1
chr8_1 CDS 68348067 68348135 68348067 ID=Msa1209760-mRNA-1:cds;Parent=Msa1209760-mRNA-1
chr8_1 CDS 68347826 68347897 68347826 ID=Msa1209760-mRNA-1:cds;Parent=Msa1209760-mRNA-1
chr8_1 CDS 68347677 68347730 68347677 ID=Msa1209760-mRNA-1:cds;Parent=Msa1209760-mRNA-1
chr8_1 CDS 68347447 68347588 68347447 ID=Msa1209760-mRNA-1:cds;Parent=Msa1209760-mRNA-1
chr8_1 CDS 68346955 68347232 68346955 ID=Msa1209760-mRNA-1:cds;Parent=Msa1209760-mRNA-1
Gene Sequence

>Msa1209760

ATGGCCAACACAAACGACGCCGGCGTAGAAGCCTTACGCCGTCTGCAACAAATCGATCCACCTTCATTGCTCGCTCCAAACCCATCGGTTTCCGAAACCGCTCGTGCTGCATCACAGTACCTATTCACTACTCTCAGACCCTTCTCCCCAAAATCACCATTGGACGAGCTTCTCGTTGATGGTTACGATGCTGAGCAGATTTGGCATCAAATTGATCTTCAATCACAGCCGCTTTTGTCCACTCTTCGTCGCCGGTTGAATCAGTTTGTTAAAAATCCGGAAGAGATTGCACAGTTTAAGGTTCCTTTGGATGATGGGAAGAAGACGGAGATAAAGAAGAGAGTGGAGTTAGAAGAGGAAGAAAGCGATGATTTTGATGAGGAATTGGATGATGACGATGATGAGGATGATTTTGAAGGTGTTGAAAAGAAGAAGACAAAAGGAGGAAGTGAAGGTGAAGATGATTTAGAAGAAGAAGATGATGAAGATGAAGACGTTGAGGGAGATGAGGAGGATGAAAAAGAGAAAGTTAAAGGTGGTGGAATTGAGGATAAATTTTTGAAAATAGATGAATTGACTGAGTATTTAGAGAAGGAGGAAGATAATTATGAGAAAGAGGAGGAGATGGATGACGCTGATGAAGACAGTGAAGAAGATGATGAACTCGAGAAGGCTGGTGAGTTTGAGATGGACGATGAGGAGGATGACGATGAAGATGAAGAAGATGAAGAGGCAGAGGATATGGGAAATGCTAGGTATGAAGACTTCTTTGGAGGTAAAAAAGAAAAGGGCTCAATAAGAAAAGATCAATTGCTTGAAGTTTCTGGTGATGAAGATGACATGGAATCAGACAAACAGAAGAAAAGGACTGCTTCTACCTATGAAAAGCAGCGGGAAAAAATTCAATCAAAGATAGAGCTGATGGAGAAAGCTAATGTAGAGCCAAAAACTTGGACTATGCAGGGTGAGGTAACTGCTTCAAAGAGACCCATAAATAGTGCATTTGAAGTTGATCTTGATTTTGAGCATAATGTGAGACCTACACCTGTAATCACCGAGGAGGTTACAGCTTCAATTGAGGAGATGATCCAGAAAAAGATTGTTGAGGGGCTTTTTAACGACGTGCAAAGGGCTCCTAAGTTGCCATCGAAAGCGCCTCGAGAAGTTAAACAATTGGATGATAATAAAAGCGGGCAGGGTCTTGCAGATCTCTATGAGCAAGAGTATGTTCAGAAGATTGACCCCACTTCTGCTCCATTGTCATTCAAAGATGAACTAAAAAATGAGGCAAGCACACTGTTTAAGAAAATCTGTCTGAAGCTGGATGCCCTTTCTCATTTCAACTTTGCTCCAAAACCTGTTATAGAGGACATGTCCTTCCAAACAAATGTACCTGCTCTGGCAATGGAAGAGATTGCTCCTGTGGCTGTTTCAGATGCTGCTATGCTGGCTCCTGAGGAGGTCTTTGATGGGAAGGGTGATGTTAAGGAAGAAGCAGAACTTACACAGGCAGAAAGGAAAAGGAGGAGAGCTAATAAGAAAAGAAAATTTAAAGCTGAGGCAGTAAACAAGTTGGAAAAGAAGGCAAGGTCGGAAAAGAAGGCAGACAATGCAATTTCTGGCCAAGTTGATGGTAATTTCTTTTTATACCCTTATATGAGAAACGCTGCATTAACCTCACTTCTGCTGTTGAATTTGTCTCACATGTTTATTTTTTGTTATCAGCCACATTTTGTGAAGAATATTAAACAACTGCTGTTTCAATTGCCGTTGTATTCTGAATTCTTAAATGCAGTTTCTGTGTTGCGTAAACTTGGCTTGTGTTGCCTTTAA

Protein sequence

>Msa1209760

MANTNDAGVEALRRLQQIDPPSLLAPNPSVSETARAASQYLFTTLRPFSPKSPLDELLVDGYDAEQIWHQIDLQSQPLLSTLRRRLNQFVKNPEEIAQFKVPLDDGKKTEIKKRVELEEEESDDFDEELDDDDDEDDFEGVEKKKTKGGSEGEDDLEEEDDEDEDVEGDEEDEKEKVKGGGIEDKFLKIDELTEYLEKEEDNYEKEEEMDDADEDSEEDDELEKAGEFEMDDEEDDDEDEEDEEAEDMGNARYEDFFGGKKEKGSIRKDQLLEVSGDEDDMESDKQKKRTASTYEKQREKIQSKIELMEKANVEPKTWTMQGEVTASKRPINSAFEVDLDFEHNVRPTPVITEEVTASIEEMIQKKIVEGLFNDVQRAPKLPSKAPREVKQLDDNKSGQGLADLYEQEYVQKIDPTSAPLSFKDELKNEASTLFKKICLKLDALSHFNFAPKPVIEDMSFQTNVPALAMEEIAPVAVSDAAMLAPEEVFDGKGDVKEEAELTQAERKRRRANKKRKFKAEAVNKLEKKARSEKKADNAISGQVDGNFFLYPYMRNAALTSLLLLNLSHMFIFCYQPHFVKNIKQLLFQLPLYSEFLNAVSVLRKLGLCCL*