AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0351990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0351990 MtrunA17_Chr3g0086861 80.149 403 50 5 1 381 1 395 1.76e-179 512
Msa0351990 MtrunA17_Chr3g0086861 76.384 271 21 6 242 479 175 435 1.65e-90 284
Msa0351990 MtrunA17_Chr3g0086861 53.670 218 49 8 300 506 175 351 1.11e-28 118
Msa0351990 MtrunA17_Chr3g0086861 58.696 92 31 3 376 463 168 256 3.09e-12 68.6
Msa0351990 MtrunA17_Chr4g0061451 72.800 125 32 1 1 125 1 123 3.37e-62 204
Msa0351990 MtrunA17_Chr7g0219021 60.938 128 46 2 1 128 1 124 4.49e-47 164
Msa0351990 MtrunA17_Chr7g0219031 59.091 110 41 2 1 110 1 106 3.83e-33 122
Msa0351990 MtrunA17_Chr3g0121631 46.774 124 57 3 1 124 1 115 7.06e-29 111
Msa0351990 MtrunA17_Chr3g0119311 52.439 82 39 0 45 126 37 118 3.20e-22 92.4
Msa0351990 MtrunA17_Chr4g0035001 52.703 74 35 0 45 118 7 80 8.06e-21 89.4
Msa0351990 MtrunA17_Chr4g0035051 49.351 77 39 0 45 121 9 85 3.11e-20 86.3
Msa0351990 MtrunA17_Chr3g0116631 44.211 95 51 1 33 127 197 289 3.63e-20 90.9
Msa0351990 MtrunA17_Chr3g0116631 44.706 85 45 1 43 127 108 190 3.24e-12 67.4
Msa0351990 MtrunA17_Chr7g0266751 41.346 104 61 0 45 148 33 136 4.17e-20 86.7
Msa0351990 MtrunA17_Chr4g0035031 48.052 77 40 0 45 121 9 85 8.66e-20 87.4
Msa0351990 MtrunA17_Chr7g0263001 39.683 126 66 2 1 125 1 117 1.30e-19 85.5
Msa0351990 MtrunA17_Chr2g0278661 40.476 84 50 0 38 121 1 84 6.32e-19 86.3
Msa0351990 MtrunA17_Chr4g0058151 51.220 82 40 0 47 128 219 300 7.82e-19 87.4
Msa0351990 MtrunA17_Chr4g0058151 42.857 84 46 1 43 126 121 202 1.17e-12 68.9
Msa0351990 MtrunA17_Chr4g0031091 40.000 90 54 0 33 122 22 111 8.75e-19 82.0
Msa0351990 MtrunA17_Chr1g0210241 40.698 86 51 0 38 123 1 86 2.66e-18 85.1
Msa0351990 MtrunA17_Chr1g0181111 45.349 86 47 0 43 128 195 280 3.62e-18 84.7
Msa0351990 MtrunA17_Chr4g0042161 44.578 83 46 0 42 124 49 131 3.78e-18 81.3
Msa0351990 MtrunA17_Chr3g0088511 40.196 102 57 2 19 118 7 106 5.83e-16 74.7
Msa0351990 MtrunA17_Chr6g0481071 41.250 80 47 0 44 123 95 174 1.78e-15 74.7
Msa0351990 MtrunA17_Chr3g0144311 41.237 97 54 3 32 126 16 111 4.15e-15 75.9
Msa0351990 MtrunA17_Chr3g0101061 38.017 121 71 2 3 123 1 117 5.61e-15 77.4
Msa0351990 MtrunA17_Chr5g0447761 44.304 79 42 1 45 123 7 83 2.30e-14 75.5
Msa0351990 MtrunA17_Chr4g0017401 38.824 85 49 2 38 121 10 92 6.50e-14 72.0
Msa0351990 MtrunA17_Chr7g0276531 41.667 84 48 1 38 121 12 94 6.91e-14 71.6
Msa0351990 MtrunA17_Chr3g0127751 39.326 89 49 2 44 130 26 111 8.80e-14 71.2
Msa0351990 MtrunA17_Chr2g0327921 42.500 80 46 0 44 123 7 86 1.09e-13 66.6
Msa0351990 MtrunA17_Chr4g0042151 41.379 87 49 1 39 125 39 123 1.37e-13 69.3
Msa0351990 MtrunA17_Chr3g0110211 40.506 79 46 1 46 123 114 192 2.00e-13 72.0
Msa0351990 MtrunA17_Chr1g0168601 41.463 82 46 1 42 121 149 230 2.57e-13 69.7
Msa0351990 MtrunA17_Chr8g0346011 32.051 156 82 4 44 176 37 191 2.68e-13 70.9
Msa0351990 MtrunA17_Chr3g0135111 41.837 98 55 1 45 142 11 106 3.22e-13 71.2
Msa0351990 MtrunA17_Chr5g0419351 36.957 92 57 1 40 130 6 97 3.58e-13 67.8
Msa0351990 MtrunA17_Chr1g0198431 37.500 80 50 0 45 124 193 272 4.09e-13 70.1
Msa0351990 MtrunA17_Chr4g0050441 43.421 76 43 0 46 121 18 93 1.01e-12 68.6
Msa0351990 MtrunA17_Chr5g0429941 43.421 76 43 0 46 121 18 93 1.43e-12 68.2
Msa0351990 MtrunA17_Chr7g0267571 32.090 134 82 3 45 178 110 234 2.71e-12 67.8
Msa0351990 MtrunA17_Chr1g0186351 36.986 73 43 1 45 114 7 79 2.79e-12 68.9
Msa0351990 MtrunA17_Chr1g0186351 39.474 76 45 1 45 120 113 187 7.78e-11 64.3
Msa0351990 MtrunA17_Chr5g0426311 40.476 84 49 1 38 121 10 92 5.57e-12 66.6
Msa0351990 MtrunA17_Chr4g0070231 41.558 77 45 0 46 122 133 209 5.71e-12 67.8
Msa0351990 MtrunA17_Chr8g0344491 40.260 77 46 0 46 122 149 225 5.92e-12 67.8
Msa0351990 MtrunA17_Chr1g0201001 39.080 87 50 1 38 121 20 106 6.79e-12 68.2
Msa0351990 MtrunA17_Chr7g0268551 40.000 80 48 0 39 118 343 422 8.85e-12 67.4
Msa0351990 MtrunA17_Chr3g0139111 38.961 77 47 0 46 122 147 223 3.66e-11 65.5
Msa0351990 MtrunA17_Chr4g0045921 32.203 118 75 3 7 120 35 151 9.82e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0351990 AT5G61030.2 57.724 123 48 2 1 123 1 119 1.60e-45 162
Msa0351990 AT5G61030.1 57.724 123 48 2 1 123 1 119 1.60e-45 162
Msa0351990 AT1G74230.1 54.918 122 44 3 1 122 1 111 9.35e-37 138
Msa0351990 AT4G13850.4 46.094 128 52 3 1 124 1 115 1.81e-27 107
Msa0351990 AT4G13850.3 46.094 128 52 3 1 124 1 115 2.19e-27 107
Msa0351990 AT4G13850.2 46.094 128 52 3 1 124 1 115 2.82e-27 107
Msa0351990 AT4G13850.1 46.094 128 52 3 1 124 1 115 3.24e-27 107
Msa0351990 AT3G23830.2 50.562 89 41 1 43 128 34 122 7.80e-25 100
Msa0351990 AT3G23830.1 50.562 89 41 1 43 128 34 122 7.80e-25 100
Msa0351990 AT5G06210.1 48.454 97 42 1 44 140 34 122 2.83e-23 96.3
Msa0351990 AT4G24770.1 51.807 83 40 0 42 124 242 324 1.48e-21 96.3
Msa0351990 AT4G24770.1 45.783 83 43 1 45 127 151 231 9.31e-14 72.8
Msa0351990 AT4G24770.2 51.807 83 40 0 42 124 242 324 1.48e-21 96.3
Msa0351990 AT4G24770.2 45.783 83 43 1 45 127 151 231 9.31e-14 72.8
Msa0351990 AT2G21660.1 49.398 83 42 0 39 121 3 85 5.99e-20 87.8
Msa0351990 AT1G18630.1 48.148 81 41 1 38 118 31 110 6.54e-20 87.0
Msa0351990 AT3G08000.1 53.012 83 39 0 45 127 42 124 7.42e-20 86.7
Msa0351990 AT2G37220.1 48.750 80 41 0 45 124 205 284 5.35e-19 87.8
Msa0351990 AT2G37220.1 38.053 113 59 3 12 118 58 165 8.74e-12 66.6
Msa0351990 AT5G50250.1 50.617 81 40 0 45 125 208 288 5.77e-19 87.8
Msa0351990 AT5G50250.1 45.783 83 43 1 45 127 114 194 1.24e-14 75.1
Msa0351990 AT3G26420.1 38.095 84 52 0 38 121 1 84 1.18e-17 83.2
Msa0351990 AT2G37510.1 49.351 77 38 1 36 112 27 102 2.27e-17 79.3
Msa0351990 AT2G21660.2 50.000 82 41 0 39 120 3 84 3.24e-17 79.3
Msa0351990 AT5G59865.1 41.053 95 55 1 30 123 11 105 3.54e-17 77.8
Msa0351990 AT3G53460.1 47.059 85 44 1 45 128 258 342 3.54e-17 83.6
Msa0351990 AT3G53460.3 47.059 85 44 1 45 128 258 342 3.54e-17 83.6
Msa0351990 AT3G53460.2 47.059 85 44 1 45 128 258 342 3.54e-17 83.6
Msa0351990 AT3G53460.4 47.059 85 44 1 45 128 279 363 5.91e-17 83.2
Msa0351990 AT1G73530.1 40.206 97 51 1 42 131 75 171 7.60e-17 79.0
Msa0351990 AT4G13860.1 48.684 76 39 0 44 119 3 78 2.15e-16 74.7
Msa0351990 AT2G27330.1 46.154 78 42 0 38 115 15 92 2.95e-16 75.5
Msa0351990 AT5G04280.1 38.614 101 60 1 44 144 7 105 3.05e-16 80.1
Msa0351990 AT5G47320.1 48.148 81 42 0 44 124 31 111 3.18e-16 78.2
Msa0351990 AT3G54770.3 42.353 85 48 1 37 121 10 93 3.52e-16 79.0
Msa0351990 AT3G54770.1 42.353 85 48 1 37 121 10 93 3.58e-16 79.0
Msa0351990 AT4G39260.1 44.737 76 42 0 45 120 7 82 8.91e-16 75.5
Msa0351990 AT3G46020.1 41.573 89 50 1 43 129 6 94 2.02e-15 72.4
Msa0351990 AT1G76460.1 41.935 93 52 2 38 129 18 109 2.61e-15 77.0
Msa0351990 AT4G39260.3 44.578 83 46 0 45 127 7 89 6.45e-15 70.9
Msa0351990 AT2G21690.1 43.662 71 40 0 47 117 10 80 8.75e-15 71.2
Msa0351990 AT3G07810.1 43.210 81 44 1 43 123 5 83 2.08e-14 76.3
Msa0351990 AT3G07810.2 43.210 81 44 1 43 123 5 83 2.18e-14 76.3
Msa0351990 AT5G54580.1 44.048 84 45 1 42 125 54 135 2.89e-14 70.9
Msa0351990 AT1G22330.1 40.678 118 62 5 38 151 11 124 2.96e-14 73.9
Msa0351990 AT5G55550.5 45.570 79 41 1 45 123 7 83 3.49e-14 75.1
Msa0351990 AT5G55550.4 45.570 79 41 1 45 123 7 83 3.49e-14 75.1
Msa0351990 AT5G55550.9 45.570 79 41 1 45 123 7 83 3.49e-14 75.1
Msa0351990 AT5G55550.7 45.570 79 41 1 45 123 7 83 3.49e-14 75.1
Msa0351990 AT5G55550.1 45.570 79 41 1 45 123 7 83 3.49e-14 75.1
Msa0351990 AT1G22910.2 40.506 79 44 2 44 121 13 89 3.61e-14 72.8
Msa0351990 AT1G22910.1 40.506 79 44 2 44 121 13 89 3.99e-14 72.8
Msa0351990 AT5G55550.2 45.570 79 41 1 45 123 7 83 4.21e-14 75.1
Msa0351990 AT5G55550.3 45.570 79 41 1 45 123 7 83 4.21e-14 75.1
Msa0351990 AT5G55550.6 45.570 79 41 1 45 123 7 83 4.21e-14 75.1
Msa0351990 AT5G55550.11 45.570 79 41 1 45 123 7 83 4.21e-14 75.1
Msa0351990 AT2G46780.1 37.778 90 52 2 39 125 17 105 4.23e-14 73.9
Msa0351990 AT2G46780.2 37.778 90 52 2 39 125 17 105 4.23e-14 73.9
Msa0351990 AT1G60000.1 45.122 82 43 1 42 121 173 254 7.14e-14 72.4
Msa0351990 AT5G55550.8 47.887 71 35 1 45 115 7 75 7.24e-14 74.3
Msa0351990 AT5G55550.10 47.887 71 35 1 45 115 7 75 8.23e-14 74.3
Msa0351990 AT1G20880.2 42.353 85 46 2 38 121 18 100 8.71e-14 72.4
Msa0351990 AT1G20880.3 42.353 85 46 2 38 121 18 100 8.71e-14 72.4
Msa0351990 AT1G20880.1 42.353 85 46 2 38 121 18 100 8.71e-14 72.4
Msa0351990 AT4G26650.1 43.038 79 43 1 45 123 16 92 1.84e-13 73.2
Msa0351990 AT4G26650.2 43.038 79 43 1 45 123 13 89 1.85e-13 73.2
Msa0351990 AT3G52380.1 44.578 83 45 1 45 127 117 198 1.88e-13 72.0
Msa0351990 AT4G13860.2 53.333 60 28 0 60 119 2 61 2.15e-13 65.9
Msa0351990 AT1G60650.2 37.975 79 49 0 43 121 11 89 2.30e-13 71.2
Msa0351990 AT1G60650.1 37.975 79 49 0 43 121 11 89 2.30e-13 71.2
Msa0351990 AT1G22910.3 40.506 79 44 2 44 121 13 89 3.60e-13 71.2
Msa0351990 AT5G47620.1 41.333 75 41 1 43 114 5 79 4.23e-13 71.6
Msa0351990 AT5G47620.2 41.333 75 41 1 43 114 5 79 4.23e-13 71.6
Msa0351990 AT5G47620.5 41.333 75 41 1 43 114 5 79 4.23e-13 71.6
Msa0351990 AT5G47620.4 45.070 71 36 1 43 110 5 75 7.80e-13 70.9
Msa0351990 AT1G33470.2 41.026 78 43 2 44 120 7 82 9.61e-13 68.6
Msa0351990 AT1G33470.3 41.026 78 43 2 44 120 7 82 9.64e-13 68.6
Msa0351990 AT1G33470.1 41.026 78 43 2 44 120 7 82 1.05e-12 68.6
Msa0351990 AT3G20930.1 37.500 80 50 0 45 124 283 362 1.54e-12 69.7
Msa0351990 AT2G33410.1 40.506 79 45 1 45 123 7 83 2.85e-12 68.9
Msa0351990 AT2G37510.2 37.255 102 38 2 36 112 27 127 2.90e-12 65.5
Msa0351990 AT5G64200.2 42.105 76 44 0 46 121 18 93 5.08e-12 67.4
Msa0351990 AT5G64200.1 42.105 76 44 0 46 121 18 93 5.08e-12 67.4
Msa0351990 AT5G59860.1 32.710 107 67 1 16 122 43 144 5.62e-12 64.3
Msa0351990 AT2G18510.1 32.174 115 65 3 17 123 83 192 7.82e-12 67.4
Msa0351990 AT4G14300.1 40.506 79 45 1 45 123 7 83 8.48e-12 67.8
Msa0351990 AT4G14300.2 40.506 79 45 1 45 123 7 83 8.48e-12 67.8
Msa0351990 AT1G07350.3 36.842 76 48 0 42 117 43 118 1.25e-11 62.8
Msa0351990 AT1G07350.2 36.842 76 48 0 42 117 43 118 1.25e-11 62.8
Msa0351990 AT4G39260.4 41.429 70 41 0 45 114 7 76 1.61e-11 61.6
Msa0351990 AT5G11412.1 38.356 73 41 1 41 109 49 121 1.61e-11 63.5
Msa0351990 AT3G14100.1 36.364 77 49 0 46 122 146 222 1.69e-11 66.6
Msa0351990 AT1G78260.1 38.462 78 47 1 44 121 17 93 1.84e-11 65.5
Msa0351990 AT1G07350.5 36.842 76 48 0 42 117 73 148 2.46e-11 62.8
Msa0351990 AT5G19030.1 32.759 116 61 2 30 128 52 167 2.67e-11 62.8
Msa0351990 AT1G54080.1 36.364 77 49 0 46 122 150 226 3.19e-11 65.9
Msa0351990 AT1G17370.2 37.662 77 48 0 46 122 141 217 3.81e-11 65.5
Msa0351990 AT1G17370.1 37.662 77 48 0 46 122 141 217 4.02e-11 65.5
Msa0351990 AT1G78260.2 38.095 84 51 1 38 121 11 93 6.92e-11 63.5

Find 194 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTCTCCACCACTGTAAT+TGG 0.187885 3_1:+19621134 None:intergenic
GGAGGTGGTGGTGGATATTC+AGG 0.196213 3_1:-19621996 Msa0351990:CDS
GTAGAGTTGGGAGTTTATTA+AGG 0.262081 3_1:-19624107 Msa0351990:CDS
GCTCCTGGTGTTGGTGGTTA+TGG 0.275269 3_1:-19621090 Msa0351990:CDS
CTATACCCTGTTGCACTTCC+AGG 0.289310 3_1:+19620976 None:intergenic
CCTCCTGGTGTTGGTGGTTA+TGG 0.295984 3_1:-19621774 Msa0351990:CDS
TCTTCATACGGTGGTGGATA+TGG 0.297730 3_1:-19621960 Msa0351990:CDS
GGTTATGGCGGAGGTGGTTA+TGG 0.310693 3_1:-19621903 Msa0351990:CDS
GCTCCTGGTGTTGGTGGTTA+TGG 0.311859 3_1:-19621357 Msa0351990:CDS
GCACCTGGTGTTGGTGGTTA+TGG 0.314342 3_1:-19621171 Msa0351990:CDS
CACTTCCAGGGTATTGATTA+CGG 0.314514 3_1:+19620989 None:intergenic
TATGGTGCTGCTGCTGGATT+TGG 0.314919 3_1:-19621072 Msa0351990:CDS
GCTCCTGGTGTTGGTGGTTA+TGG 0.324245 3_1:-19621513 Msa0351990:CDS
GCTCCTGGTGTTGGTGGTTA+TGG 0.324245 3_1:-19621600 Msa0351990:CDS
GCTCCTGGTGTTGGTGGTTA+TGG 0.324245 3_1:-19621687 Msa0351990:CDS
GCTCCTGGTGTTGGTGGTTA+TGG 0.326706 3_1:-19621426 Msa0351990:CDS
GCTCCTGTTGCTGGTGTTTA+CGG 0.332135 3_1:-19621264 Msa0351990:CDS
CCAAGCCATACGGTGCTTCT+CGG 0.335689 3_1:-19624025 Msa0351990:CDS
GGTGCTAACAATGTAAATTA+TGG 0.345822 3_1:-19621240 Msa0351990:CDS
GCTCCCGGGAGCAGCTTTGC+TGG 0.358288 3_1:-19620940 Msa0351990:CDS
ACCACCACGGGGTCTTTCAT+TGG 0.359285 3_1:+19622040 None:intergenic
GGAGGCATCAAGTGCCATTC+AGG 0.360417 3_1:-19623260 Msa0351990:CDS
CAACACCACCGGTACTATAA+TGG 0.362745 3_1:+19621037 None:intergenic
CAATACCCTGGAAGTGCAAC+AGG 0.364374 3_1:-19620982 Msa0351990:CDS
ACTGGTAGGTCCAAAGGATT+TGG 0.367522 3_1:-19623307 Msa0351990:CDS
TACGGTAGTGCTCCTGTTGC+TGG 0.368507 3_1:-19621273 Msa0351990:CDS
GGTGGTTATGGTGCTGCTGC+TGG 0.370957 3_1:-19621078 Msa0351990:CDS
GGTGGATATTCAGGTGGTTA+TGG 0.372561 3_1:-19621987 Msa0351990:CDS
TCCTACAAACAGCTTGGTAT+TGG 0.375210 3_1:+19623996 None:intergenic
TATGGAAACAATGCAAATTA+TGG 0.382926 3_1:-19621495 Msa0351990:CDS
TATGGAAACAATGCAAATTA+TGG 0.382926 3_1:-19621582 Msa0351990:CDS
TATGGAAACAATGCAAATTA+TGG 0.382926 3_1:-19621669 Msa0351990:CDS
TATGGAAACAATGCAAATTA+TGG 0.382926 3_1:-19621756 Msa0351990:CDS
CCTTATGGTGGTGGAGGTGG+TGG 0.387616 3_1:-19622008 Msa0351990:CDS
TATGGTGGTGGAGGTGGTGG+TGG 0.394686 3_1:-19622005 Msa0351990:CDS
GAAAGCAATTCTGTTAACTA+TGG 0.395798 3_1:-19621117 Msa0351990:CDS
GAAAGCAATTCTGTTAACTA+TGG 0.398237 3_1:-19621198 Msa0351990:CDS
TATGGTAACAATGTGAATTA+TGG 0.398804 3_1:-19621408 Msa0351990:CDS
ATAATTATGGATCGCGAAAC+TGG 0.398913 3_1:-19623325 Msa0351990:CDS
CCTACAAACAGCTTGGTATT+GGG 0.403404 3_1:+19623997 None:intergenic
GGACCTTATGGTGGTGGAGG+TGG 0.405984 3_1:-19622011 Msa0351990:CDS
ATCAAGTGCCATTCAGGCCT+TGG 0.407278 3_1:-19623254 Msa0351990:CDS
ACTTCCAGGGTATTGATTAC+GGG 0.413785 3_1:+19620990 None:intergenic
GGTGGAAACGATGCAAATTA+TGG 0.422269 3_1:-19621843 Msa0351990:CDS
TATGATAGAACTGGAGGACT+TGG 0.426268 3_1:-19620913 Msa0351990:CDS
TGGCTTTCTTCGGTAGAGTT+GGG 0.427198 3_1:-19624119 Msa0351990:CDS
AGTAACAAAGCCAAATCCTT+TGG 0.430233 3_1:+19623297 None:intergenic
GGCTATAGTGGTAATGCTGC+TGG 0.431605 3_1:-19621927 Msa0351990:CDS
AGCTAAGAACAACAAATTCA+AGG 0.432335 3_1:-19625053 Msa0351990:intron
GGAACTACCAGTGGTGGTTA+TGG 0.436521 3_1:-19621864 Msa0351990:CDS
ATAGTACCGGTGGTGTTGGT+GGG 0.437403 3_1:-19621032 Msa0351990:CDS
GGTGGTAACAGTGCAAATTA+TGG 0.437840 3_1:-19621333 Msa0351990:CDS
CCCAATACCAAGCTGTTTGT+AGG 0.444353 3_1:-19623997 Msa0351990:CDS
TTTGATGGACCTTATGGTGG+TGG 0.444397 3_1:-19622017 Msa0351990:CDS
CCACCGTAAACACCAGCAAC+AGG 0.447301 3_1:+19621261 None:intergenic
TATAGTACCGGTGGTGTTGG+TGG 0.447497 3_1:-19621033 Msa0351990:CDS
GTTAACTATGGTATTGCTCC+TGG 0.448065 3_1:-19621105 Msa0351990:CDS
CTGTCCATCCAAGGCCTGAA+TGG 0.451832 3_1:+19623246 None:intergenic
GGTAATGCTGCTGGCTATAG+TGG 0.453897 3_1:-19621939 Msa0351990:CDS
GGTAATGCTGCTGGAGGTTA+TGG 0.457740 3_1:-19621918 Msa0351990:CDS
CAAGCCATACGGTGCTTCTC+GGG 0.458672 3_1:-19624024 Msa0351990:CDS
GGCAGTGCTCCTGGTGTTGG+TGG 0.458730 3_1:-19621363 Msa0351990:CDS
GCTAACTATGGCAGTGCTCC+TGG 0.459620 3_1:-19621372 Msa0351990:CDS
GCTGCTGATACTGCTAACTA+TGG 0.470068 3_1:-19621384 Msa0351990:CDS
TATGGAAACACTTACAATGA+TGG 0.470763 3_1:-19621885 Msa0351990:CDS
CCCTTCTGCAAAATTTCGCT+AGG 0.471059 3_1:-19625116 Msa0351990:five_prime_UTR
GAAAGCAATGCTGTTAACTA+TGG 0.472224 3_1:-19621453 Msa0351990:CDS
GAAAGCAATGCTGTTAACTA+TGG 0.472224 3_1:-19621540 Msa0351990:CDS
GAAAGCAATGCTGTTAACTA+TGG 0.472224 3_1:-19621627 Msa0351990:CDS
GAAAGCAATGCTGTTAACTA+TGG 0.472224 3_1:-19621714 Msa0351990:CDS
GAAAGCAATGCTGTTAACTA+TGG 0.472224 3_1:-19621801 Msa0351990:CDS
CCACCATAACCACCAACACC+AGG 0.472812 3_1:+19621354 None:intergenic
GGTATTGCTCCTGGTGTTGG+TGG 0.473295 3_1:-19621096 Msa0351990:CDS
ACAACTCACCGTCAAGAACT+TGG 0.473731 3_1:+19623474 None:intergenic
GTTAACTATGGTAGTGCTCC+TGG 0.474066 3_1:-19621441 Msa0351990:CDS
GTTAACTATGGTAGTGCTCC+TGG 0.474066 3_1:-19621528 Msa0351990:CDS
GTTAACTATGGTAGTGCTCC+TGG 0.474066 3_1:-19621615 Msa0351990:CDS
GTTAACTATGGTAGTGCTCC+TGG 0.474066 3_1:-19621702 Msa0351990:CDS
GATGGACCTTATGGTGGTGG+AGG 0.475314 3_1:-19622014 Msa0351990:CDS
TCCACCAGCAAAGCTGCTCC+CGG 0.475573 3_1:+19620936 None:intergenic
ATGGCTTTCTTCGGTAGAGT+TGG 0.479186 3_1:-19624120 Msa0351990:CDS
GTTACAGGAATGGCTTTCTT+CGG 0.479490 3_1:-19624129 Msa0351990:intron
ATTACGGGAGAAACCATTGC+TGG 0.481459 3_1:+19621005 None:intergenic
GCTGGTGGATATGATAGAAC+TGG 0.486983 3_1:-19620922 Msa0351990:CDS
GGTGTTGGTGGTTATGGTGG+TGG 0.487083 3_1:-19621165 Msa0351990:CDS
GGTGTTGGTGGTTATGGTGG+TGG 0.487083 3_1:-19621351 Msa0351990:CDS
GGTAGTGCTCCTGGTGTTGG+TGG 0.492463 3_1:-19621432 Msa0351990:CDS
GGTAGTGCTCCTGGTGTTGG+TGG 0.492463 3_1:-19621519 Msa0351990:CDS
GGTAGTGCTCCTGGTGTTGG+TGG 0.492463 3_1:-19621606 Msa0351990:CDS
GGTAGTGCTCCTGGTGTTGG+TGG 0.492463 3_1:-19621693 Msa0351990:CDS
GGTAGTCCTCCTGGTGTTGG+TGG 0.492463 3_1:-19621780 Msa0351990:CDS
GCAAATTATGGTGCGGCTGT+AGG 0.493495 3_1:-19621483 Msa0351990:CDS
CCGAGAAGCACCGTATGGCT+TGG 0.494835 3_1:+19624025 None:intergenic
GTTAACTATGGTAGTCCTCC+TGG 0.498449 3_1:-19621789 Msa0351990:CDS
GCAAATTATGGTGCGGCTGT+AGG 0.498773 3_1:-19621570 Msa0351990:CDS
GCAAATTATGGTGCAGCTGT+AGG 0.500685 3_1:-19621657 Msa0351990:CDS
GCACCATAACCACCAACACC+AGG 0.502988 3_1:+19621087 None:intergenic
AGCAGTGGCAGTTCAGCTCC+CGG 0.508874 3_1:-19620955 Msa0351990:CDS
TATGGTATTGCTCCTGGTGT+TGG 0.511609 3_1:-19621099 Msa0351990:CDS
GGTAGTGCACCTGGTGTTGG+TGG 0.514951 3_1:-19621177 Msa0351990:CDS
CCCGGGAGCAGCTTTGCTGG+TGG 0.515216 3_1:-19620937 Msa0351990:CDS
CCACCACCTCCACCACCATA+AGG 0.516234 3_1:+19622008 None:intergenic
CGTATGGCTTGGAAAACAGA+TGG 0.517156 3_1:+19624036 None:intergenic
CATTCAGGCCTTGGATGGAC+AGG 0.517691 3_1:-19623245 Msa0351990:intron
TATGGCAGTGCTCCTGGTGT+TGG 0.518016 3_1:-19621366 Msa0351990:CDS
CCTGGTGTTGGTGGTTATGG+TGG 0.520748 3_1:-19621168 Msa0351990:CDS
TATGGTAGTGCTCCTGGTGT+TGG 0.523204 3_1:-19621435 Msa0351990:CDS
TATGGTAGTGCTCCTGGTGT+TGG 0.523204 3_1:-19621522 Msa0351990:CDS
TATGGTAGTGCTCCTGGTGT+TGG 0.523204 3_1:-19621609 Msa0351990:CDS
TATGGTAGTGCTCCTGGTGT+TGG 0.523204 3_1:-19621696 Msa0351990:CDS
GCTGGAGGTTATGGCGGAGG+TGG 0.526799 3_1:-19621909 Msa0351990:CDS
CCTGGTGTTGGTGGTTATGG+TGG 0.529383 3_1:-19621354 Msa0351990:CDS
CATTATAGTACCGGTGGTGT+TGG 0.529829 3_1:-19621036 Msa0351990:CDS
GATCTGCATGGTCGCCGAGT+TGG 0.531154 3_1:-19622074 Msa0351990:CDS
TAGTACCGGTGGTGTTGGTG+GGG 0.534630 3_1:-19621031 Msa0351990:CDS
CAGAAGGGTTTAAGAAGCAA+AGG 0.536688 3_1:+19625131 None:intergenic
AGTACCGGTGGTGTTGGTGG+GGG 0.540589 3_1:-19621030 Msa0351990:CDS
AGAAGGGTTTAAGAAGCAAA+GGG 0.541387 3_1:+19625132 None:intergenic
TATACCCTGTTGCACTTCCA+GGG 0.541487 3_1:+19620977 None:intergenic
GCAAATTATGGTGCTGCTGT+AGG 0.541604 3_1:-19621831 Msa0351990:CDS
TATGGTAGTCCTCCTGGTGT+TGG 0.542111 3_1:-19621783 Msa0351990:CDS
GTTAACTATGGTAGTGCACC+TGG 0.543191 3_1:-19621186 Msa0351990:CDS
CCTTCTGCAAAATTTCGCTA+GGG 0.543411 3_1:-19625115 Msa0351990:five_prime_UTR
AGTGCCATTCAGGCCTTGGA+TGG 0.546654 3_1:-19623250 Msa0351990:CDS
AGGTCCATCAAAACCACCAC+GGG 0.547372 3_1:+19622028 None:intergenic
CGCGAAACTGGTAGGTCCAA+AGG 0.548206 3_1:-19623313 Msa0351990:CDS
CCACCAGCAAAGCTGCTCCC+GGG 0.552776 3_1:+19620937 None:intergenic
CTCACCTCCTACAAACAGCT+TGG 0.553614 3_1:+19623990 None:intergenic
GCAAATTATGGTGCGGCTGT+AGG 0.554874 3_1:-19621321 Msa0351990:CDS
GCAAATTATGGTGCTGCTGT+AGG 0.557750 3_1:-19621744 Msa0351990:CDS
TATGGTAGTGCACCTGGTGT+TGG 0.559778 3_1:-19621180 Msa0351990:CDS
TACTTACAATACTGTTGAGG+AGG 0.563819 3_1:-19623278 Msa0351990:CDS
TATGGTGCGGCTGTAGGTGG+TGG 0.566297 3_1:-19621315 Msa0351990:CDS
GCTGCTGGAGGTTATGGCGG+AGG 0.566970 3_1:-19621912 Msa0351990:CDS
GGACTTGGATACGGTGAAAG+TGG 0.567518 3_1:-19620898 Msa0351990:CDS
AGTGATAACCATTATAGTAC+CGG 0.567539 3_1:-19621045 Msa0351990:CDS
TTCTCCCGTAATCAATACCC+TGG 0.569136 3_1:-19620994 Msa0351990:CDS
GGTGGATATGGTAATGCTGC+TGG 0.572266 3_1:-19621948 Msa0351990:CDS
CCACCATAACCACCAACACC+AGG 0.573676 3_1:+19621168 None:intergenic
AGATATGGCCAAGTTCTTGA+CGG 0.577723 3_1:-19623482 Msa0351990:intron
TTTCCATAACCACCAACACC+AGG 0.577846 3_1:+19621510 None:intergenic
TTTCCATAACCACCAACACC+AGG 0.577846 3_1:+19621597 None:intergenic
TTTCCATAACCACCAACACC+AGG 0.577846 3_1:+19621684 None:intergenic
TTTCCATAACCACCAACACC+AGG 0.577846 3_1:+19621771 None:intergenic
TGTTACTTACAATACTGTTG+AGG 0.579889 3_1:-19623281 Msa0351990:CDS
GTAAATTATGGTACTGCTGT+AGG 0.581294 3_1:-19621228 Msa0351990:CDS
GCAGTGGCAGTTCAGCTCCC+GGG 0.581433 3_1:-19620954 Msa0351990:CDS
GAAAGCAATTCTGTTAACTA+CGG 0.582061 3_1:-19621291 Msa0351990:CDS
GTATGGCTTGGAAAACAGAT+GGG 0.584601 3_1:+19624037 None:intergenic
GGTAACTCTTCATACGGTGG+TGG 0.589902 3_1:-19621966 Msa0351990:CDS
TATGGTGCGGCTGTAGGCGG+TGG 0.590083 3_1:-19621564 Msa0351990:CDS
CTGAGTTACCTGTCCATCCA+AGG 0.590534 3_1:+19623237 None:intergenic
TATGGTGCTGCTGTAGGCGG+TGG 0.593381 3_1:-19621738 Msa0351990:CDS
TATGGTGCTGCTGTAGGCGG+TGG 0.593381 3_1:-19621825 Msa0351990:CDS
GGTTATGGTAACTCTTCATA+CGG 0.593911 3_1:-19621972 Msa0351990:CDS
AATTATGGTGCGGCTGTAGG+TGG 0.596398 3_1:-19621318 Msa0351990:CDS
AGAACTGGAGGACTTGGATA+CGG 0.599018 3_1:-19620907 Msa0351990:CDS
GGTGGTGGTGGATATTCAGG+TGG 0.605763 3_1:-19621993 Msa0351990:CDS
AACAGTGCCAATTACAGTGG+TGG 0.607861 3_1:-19621141 Msa0351990:CDS
AATACCAAGCTGTTTGTAGG+AGG 0.614431 3_1:-19623994 Msa0351990:intron
TTACGGGAGAAACCATTGCT+GGG 0.614736 3_1:+19621006 None:intergenic
TTACCATAACCACCAACACC+AGG 0.615865 3_1:+19621423 None:intergenic
TATGGTGCGGCTGTAGGCAG+TGG 0.619969 3_1:-19621477 Msa0351990:CDS
GTTTCCACCATAACCACCAC+TGG 0.622310 3_1:+19621857 None:intergenic
AATTATGGTGCGGCTGTAGG+CGG 0.623218 3_1:-19621567 Msa0351990:CDS
TTATGGATCGCGAAACTGGT+AGG 0.623605 3_1:-19623321 Msa0351990:CDS
ACTACCAGTGGTGGTTATGG+TGG 0.626441 3_1:-19621861 Msa0351990:CDS
TGGCAAAATTTACACCAACT+CGG 0.629242 3_1:+19622060 None:intergenic
AGTACCCGAGAAGCACCGTA+TGG 0.630479 3_1:+19624020 None:intergenic
TACAATGATGGAACTACCAG+TGG 0.633369 3_1:-19621873 Msa0351990:CDS
AATGCTGCTGGAGGTTATGG+CGG 0.635356 3_1:-19621915 Msa0351990:CDS
AATTATGGTGCTGCTGTAGG+CGG 0.652021 3_1:-19621741 Msa0351990:CDS
AATTATGGTGCTGCTGTAGG+CGG 0.652021 3_1:-19621828 Msa0351990:CDS
AATGATGGAACTACCAGTGG+TGG 0.655253 3_1:-19621870 Msa0351990:CDS
CCTGTTGCTGGTGTTTACGG+TGG 0.660993 3_1:-19621261 Msa0351990:CDS
GCCAATGAAAGACCCCGTGG+TGG 0.663368 3_1:-19622041 Msa0351990:CDS
GATAACCATTATAGTACCGG+TGG 0.664559 3_1:-19621042 Msa0351990:CDS
TATGGTGCAGCTGTAGGCGG+TGG 0.665099 3_1:-19621651 Msa0351990:CDS
AGTGCAACAGGGTATAGCAG+TGG 0.673542 3_1:-19620970 Msa0351990:CDS
AATTATGGTGCAGCTGTAGG+CGG 0.681445 3_1:-19621654 Msa0351990:CDS
GGTGGATATGATAGAACTGG+AGG 0.686015 3_1:-19620919 Msa0351990:CDS
TATGGTAACTCTTCATACGG+TGG 0.686177 3_1:-19621969 Msa0351990:CDS
AAGGTCCATCAAAACCACCA+CGG 0.693888 3_1:+19622027 None:intergenic
TATGGCTTGGAAAACAGATG+GGG 0.700345 3_1:+19624038 None:intergenic
GAAGGGTTTAAGAAGCAAAG+GGG 0.702455 3_1:+19625133 None:intergenic
CCATAACCACCAACACCAGG+AGG 0.710651 3_1:+19621774 None:intergenic
AATACCCTGGAAGTGCAACA+GGG 0.711945 3_1:-19620981 Msa0351990:CDS
TTTGCCAATGAAAGACCCCG+TGG 0.723240 3_1:-19622044 Msa0351990:CDS
TATAGTGGTAATGCTGCTGG+AGG 0.728658 3_1:-19621924 Msa0351990:CDS
AAACAATGCAAATTATGGTG+CGG 0.743182 3_1:-19621490 Msa0351990:CDS
AAACAATGCAAATTATGGTG+CGG 0.743182 3_1:-19621577 Msa0351990:CDS
GGTAACAGTGCCAATTACAG+TGG 0.753278 3_1:-19621144 Msa0351990:CDS
TAACAGTGCAAATTATGGTG+CGG 0.758913 3_1:-19621328 Msa0351990:CDS
GGTCCATCAAAACCACCACG+GGG 0.809353 3_1:+19622029 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATGAATTAATCAAA+TGG - chr3_1:19621305-19621324 Msa0351990:CDS 10.0%
!!! AAGATTTTATATTATTTTGT+TGG - chr3_1:19621713-19621732 Msa0351990:CDS 10.0%
!!! TTATTTTTATAATTTTCATC+AGG - chr3_1:19621855-19621874 Msa0351990:CDS 10.0%
!! TTTCATATATATTGAAAATT+AGG - chr3_1:19622084-19622103 Msa0351990:intron 10.0%
!!! TTTCATTCATTTTTTCTTTT+GGG + chr3_1:19621105-19621124 None:intergenic 15.0%
!!! TTTTCATTCATTTTTTCTTT+TGG + chr3_1:19621106-19621125 None:intergenic 15.0%
!!! TTTGTTTATATTTTCTTTTC+TGG - chr3_1:19621160-19621179 Msa0351990:CDS 15.0%
!!! TTGTTTATATTTTCTTTTCT+GGG - chr3_1:19621161-19621180 Msa0351990:CDS 15.0%
!!! ATTTTGCTTTTATTAATGTT+TGG - chr3_1:19621760-19621779 Msa0351990:CDS 15.0%
!!! TTTTGCTTTTATTAATGTTT+GGG - chr3_1:19621761-19621780 Msa0351990:CDS 15.0%
!! ATACTTCATGTTAATTTAAT+TGG - chr3_1:19623840-19623859 Msa0351990:intron 15.0%
!! CATTCATAAATAAATAAGAA+AGG + chr3_1:19623896-19623915 None:intergenic 15.0%
!!! TTTGGTTTTATTGATGTTTT+TGG - chr3_1:19621196-19621215 Msa0351990:CDS 20.0%
!!! TTGGTTTTATTGATGTTTTT+GGG - chr3_1:19621197-19621216 Msa0351990:CDS 20.0%
!! GAACAAATATAACGAAAAAT+GGG + chr3_1:19621533-19621552 None:intergenic 20.0%
!! AGAACAAATATAACGAAAAA+TGG + chr3_1:19621534-19621553 None:intergenic 20.0%
!! CAAAGACAAAATTAAAGTAA+TGG + chr3_1:19621557-19621576 None:intergenic 20.0%
!! ATCATAATTATTACTCTTTC+TGG - chr3_1:19621577-19621596 Msa0351990:CDS 20.0%
!! CAAAGACAAAATTAAAGTAA+TGG + chr3_1:19621557-19621576 None:intergenic 20.0%
!!! AAATTTTTACACAATCCATA+AGG + chr3_1:19621744-19621763 None:intergenic 20.0%
!! AAATTATTTATCAGTGTCTA+CGG + chr3_1:19622192-19622211 None:intergenic 20.0%
!!! TTTTATAGCAAGGATAATTA+TGG - chr3_1:19622668-19622687 Msa0351990:intron 20.0%
!!! TGAATGTAATTTTTGTTTTC+AGG - chr3_1:19623910-19623929 Msa0351990:intron 20.0%
! AGAAATGAAAAAAAGATTGG+TGG + chr3_1:19620991-19621010 None:intergenic 25.0%
! ACGAGAAATGAAAAAAAGAT+TGG + chr3_1:19620994-19621013 None:intergenic 25.0%
! ACGAAAATGAGGAAATAATT+TGG - chr3_1:19621458-19621477 Msa0351990:CDS 25.0%
! AATATAACGAAAAATGGGAA+TGG + chr3_1:19621528-19621547 None:intergenic 25.0%
!! ATTTTGTTGGTATTTCCTTA+TGG - chr3_1:19621726-19621745 Msa0351990:CDS 25.0%
!! TATAATTTTCATCAGGTTAC+AGG - chr3_1:19621862-19621881 Msa0351990:CDS 25.0%
! AATTATTTATCAGTGTCTAC+GGG + chr3_1:19622191-19622210 None:intergenic 25.0%
! ATTTCTTGTAAAACCAAGAT+AGG - chr3_1:19622327-19622346 Msa0351990:intron 25.0%
! TGCTATGATAAATCCATATT+GGG - chr3_1:19622352-19622371 Msa0351990:intron 25.0%
!! TCTCTAGTGTGTATTTATTT+TGG - chr3_1:19622921-19622940 Msa0351990:intron 25.0%
! TGGGATTCATTATAGTTAAT+CGG + chr3_1:19622982-19623001 None:intergenic 25.0%
! AATGTTCAATGGAATCAATT+GGG + chr3_1:19623001-19623020 None:intergenic 25.0%
! AAAGTTGACAAAAAAAGAAG+TGG + chr3_1:19623045-19623064 None:intergenic 25.0%
! ATAAGATTCGATTCACAATT+TGG - chr3_1:19623176-19623195 Msa0351990:intron 25.0%
! TGCTACATTCAATATTAGTT+TGG - chr3_1:19623438-19623457 Msa0351990:intron 25.0%
!! GCTACATTCAATATTAGTTT+GGG - chr3_1:19623439-19623458 Msa0351990:intron 25.0%
! ATGATATTCTCTTTATCGAT+AGG + chr3_1:19623598-19623617 None:intergenic 25.0%
! TTATTGTTCCTTCATTTGAT+AGG - chr3_1:19623644-19623663 Msa0351990:intron 25.0%
!!! CTGTTAATGACAATTTTAAC+TGG + chr3_1:19623700-19623719 None:intergenic 25.0%
! CAGTTAAAATTGTCATTAAC+AGG - chr3_1:19623698-19623717 Msa0351990:intron 25.0%
! AAAAAAGTTTGTAAGATGAC+AGG + chr3_1:19623818-19623837 None:intergenic 25.0%
! TTAATTGGCATTTGTAACAA+CGG - chr3_1:19623855-19623874 Msa0351990:intron 25.0%
! TATGGAAACAATGCAAATTA+TGG - chr3_1:19624250-19624269 Msa0351990:intron 25.0%
! TATGGAAACAATGCAAATTA+TGG - chr3_1:19624250-19624269 Msa0351990:intron 25.0%
! TATGGAAACAATGCAAATTA+TGG - chr3_1:19624250-19624269 Msa0351990:intron 25.0%
! TATGGAAACAATGCAAATTA+TGG - chr3_1:19624250-19624269 Msa0351990:intron 25.0%
! TATGGTAACAATGTGAATTA+TGG - chr3_1:19624598-19624617 Msa0351990:intron 25.0%
AGCTAAGAACAACAAATTCA+AGG - chr3_1:19620953-19620972 Msa0351990:CDS 30.0%
AATCACTGACACTTCAAAAA+CGG - chr3_1:19621267-19621286 Msa0351990:CDS 30.0%
TGGATCAAAATTCTTTCCAT+TGG - chr3_1:19621435-19621454 Msa0351990:CDS 30.0%
!!! CATTTTTTATCCACTCTTTC+TGG + chr3_1:19621617-19621636 None:intergenic 30.0%
! TGCTTTTATTAATGTTTGGG+CGG - chr3_1:19621764-19621783 Msa0351990:CDS 30.0%
TTGAAAATTAGGACCTTTGT+TGG - chr3_1:19622095-19622114 Msa0351990:intron 30.0%
TGAAAATTAGGACCTTTGTT+GGG - chr3_1:19622096-19622115 Msa0351990:intron 30.0%
TTGAACGTAACTATATGTGT+TGG - chr3_1:19622228-19622247 Msa0351990:intron 30.0%
ATTCAAATTGAAGACGTGTT+TGG + chr3_1:19622280-19622299 None:intergenic 30.0%
CTGCTATGATAAATCCATAT+TGG - chr3_1:19622351-19622370 Msa0351990:intron 30.0%
! TGTTTTCTTTTTCCCTTCTA+GGG - chr3_1:19622564-19622583 Msa0351990:intron 30.0%
!!! ATCTCGTTGTTTTTATAGCA+AGG - chr3_1:19622658-19622677 Msa0351990:intron 30.0%
! TGTTACTTACAATACTGTTG+AGG - chr3_1:19622725-19622744 Msa0351990:intron 30.0%
TATACATACGAGTTGTATCT+CGG - chr3_1:19622866-19622885 Msa0351990:intron 30.0%
GGGATTCATTATAGTTAATC+GGG + chr3_1:19622981-19623000 None:intergenic 30.0%
CAATGTTCAATGGAATCAAT+TGG + chr3_1:19623002-19623021 None:intergenic 30.0%
TAAGCTTACACAATGTTCAA+TGG + chr3_1:19623012-19623031 None:intergenic 30.0%
TTGAGAAACATATCGTGAAT+CGG + chr3_1:19623215-19623234 None:intergenic 30.0%
AGCATTTGTATATGTGTACA+TGG + chr3_1:19623246-19623265 None:intergenic 30.0%
TACAAATGCTGAAACTACAT+AGG - chr3_1:19623256-19623275 Msa0351990:CDS 30.0%
CTCGACAATTATAAGGAAAA+GGG + chr3_1:19623386-19623405 None:intergenic 30.0%
GTAAAAGCTCGACAATTATA+AGG + chr3_1:19623393-19623412 None:intergenic 30.0%
TATGGAAACACTTACAATGA+TGG - chr3_1:19624121-19624140 Msa0351990:CDS 30.0%
AAACAATGCAAATTATGGTG+CGG - chr3_1:19624255-19624274 Msa0351990:intron 30.0%
AAACAATGCAAATTATGGTG+CGG - chr3_1:19624255-19624274 Msa0351990:intron 30.0%
GAAAGCAATTCTGTTAACTA+CGG - chr3_1:19624715-19624734 Msa0351990:intron 30.0%
GGTGCTAACAATGTAAATTA+TGG - chr3_1:19624766-19624785 Msa0351990:intron 30.0%
GAAAGCAATTCTGTTAACTA+TGG - chr3_1:19624715-19624734 Msa0351990:intron 30.0%
GAAAGCAATTCTGTTAACTA+TGG - chr3_1:19624715-19624734 Msa0351990:intron 30.0%
AGTGATAACCATTATAGTAC+CGG - chr3_1:19624961-19624980 Msa0351990:intron 30.0%
!!! AAGTTGATGCTTTTGCTAAA+CGG - chr3_1:19625160-19625179 Msa0351990:five_prime_UTR 30.0%
AGAAGGGTTTAAGAAGCAAA+GGG + chr3_1:19620877-19620896 None:intergenic 35.0%
! ATTTTCTTTTCTGGGTTGTG+CGG - chr3_1:19621169-19621188 Msa0351990:CDS 35.0%
!!! AGCTGAATGAGTTTTTTCGT+TGG - chr3_1:19621415-19621434 Msa0351990:CDS 35.0%
! ATTTCCTCATTTTCGTCCAA+TGG + chr3_1:19621454-19621473 None:intergenic 35.0%
!!! ACTCTTTCTGGTTTTGTTTG+GGG + chr3_1:19621605-19621624 None:intergenic 35.0%
!!! CACTCTTTCTGGTTTTGTTT+GGG + chr3_1:19621606-19621625 None:intergenic 35.0%
! GCTTTTATTAATGTTTGGGC+GGG - chr3_1:19621765-19621784 Msa0351990:CDS 35.0%
! TTTTCATCAGGTTACAGGAA+TGG - chr3_1:19621867-19621886 Msa0351990:CDS 35.0%
GTAGAGTTGGGAGTTTATTA+AGG - chr3_1:19621899-19621918 Msa0351990:CDS 35.0%
GAAAATTAGGACCTTTGTTG+GGG - chr3_1:19622097-19622116 Msa0351990:intron 35.0%
AAAATTAGGACCTTTGTTGG+GGG - chr3_1:19622098-19622117 Msa0351990:intron 35.0%
ACGTCTTCAATTTGAATTGC+CGG - chr3_1:19622283-19622302 Msa0351990:intron 35.0%
TTATCATAGCAGACCTATCT+TGG + chr3_1:19622343-19622362 None:intergenic 35.0%
! CATGATAGGGTTTAAAACAG+GGG + chr3_1:19622382-19622401 None:intergenic 35.0%
! GCATGATAGGGTTTAAAACA+GGG + chr3_1:19622383-19622402 None:intergenic 35.0%
ATGCCAAGATAGGATCTTTA+TGG - chr3_1:19622399-19622418 Msa0351990:intron 35.0%
CAACCATAAAGATCCTATCT+TGG + chr3_1:19622405-19622424 None:intergenic 35.0%
ATGCAAATTCATGTGTTTGC+AGG - chr3_1:19622455-19622474 Msa0351990:intron 35.0%
!!! AGCGATGCTTTTTCAAGATA+TGG - chr3_1:19622509-19622528 Msa0351990:intron 35.0%
! CTGTTTTCTTTTTCCCTTCT+AGG - chr3_1:19622563-19622582 Msa0351990:intron 35.0%
! GTTTTCTTTTTCCCTTCTAG+GGG - chr3_1:19622565-19622584 Msa0351990:intron 35.0%
! TTTTCTTTTTCCCTTCTAGG+GGG - chr3_1:19622566-19622585 Msa0351990:intron 35.0%
ATAATTATGGATCGCGAAAC+TGG - chr3_1:19622681-19622700 Msa0351990:intron 35.0%
AGTAACAAAGCCAAATCCTT+TGG + chr3_1:19622712-19622731 None:intergenic 35.0%
TACTTACAATACTGTTGAGG+AGG - chr3_1:19622728-19622747 Msa0351990:intron 35.0%
TGTACGTGTATGCAATCATT+CGG + chr3_1:19622828-19622847 None:intergenic 35.0%
GCTCGACAATTATAAGGAAA+AGG + chr3_1:19623387-19623406 None:intergenic 35.0%
ACTTATGTGTCTAATCATCC+AGG - chr3_1:19623411-19623430 Msa0351990:intron 35.0%
TATTGAATGTAGCAGTAACC+TGG + chr3_1:19623432-19623451 None:intergenic 35.0%
!!! AATTTTAACTGGAGACCACA+TGG + chr3_1:19623689-19623708 None:intergenic 35.0%
CATCACAGTTAAGTTACTGA+AGG + chr3_1:19623763-19623782 None:intergenic 35.0%
!!! TTTTGTTTTCAGGATCTGCA+TGG - chr3_1:19623920-19623939 Msa0351990:intron 35.0%
TGGCAAAATTTACACCAACT+CGG + chr3_1:19623949-19623968 None:intergenic 35.0%
GGTTATGGTAACTCTTCATA+CGG - chr3_1:19624034-19624053 Msa0351990:CDS 35.0%
GAAAGCAATGCTGTTAACTA+TGG - chr3_1:19624205-19624224 Msa0351990:intron 35.0%
GAAAGCAATGCTGTTAACTA+TGG - chr3_1:19624205-19624224 Msa0351990:intron 35.0%
GAAAGCAATGCTGTTAACTA+TGG - chr3_1:19624205-19624224 Msa0351990:intron 35.0%
GAAAGCAATGCTGTTAACTA+TGG - chr3_1:19624205-19624224 Msa0351990:intron 35.0%
GAAAGCAATGCTGTTAACTA+TGG - chr3_1:19624205-19624224 Msa0351990:intron 35.0%
TAACAGTGCAAATTATGGTG+CGG - chr3_1:19624678-19624697 Msa0351990:intron 35.0%
GTAAATTATGGTACTGCTGT+AGG - chr3_1:19624778-19624797 Msa0351990:intron 35.0%
!! AGTTGATGCTTTTGCTAAAC+GGG - chr3_1:19625161-19625180 Msa0351990:five_prime_UTR 35.0%
GAAGGGTTTAAGAAGCAAAG+GGG + chr3_1:19620876-19620895 None:intergenic 40.0%
CAGAAGGGTTTAAGAAGCAA+AGG + chr3_1:19620878-19620897 None:intergenic 40.0%
! CCTAGCGAAATTTTGCAGAA+GGG + chr3_1:19620893-19620912 None:intergenic 40.0%
CCTTCTGCAAAATTTCGCTA+GGG - chr3_1:19620891-19620910 Msa0351990:CDS 40.0%
CTTTCCATTGGACGAAAATG+AGG - chr3_1:19621447-19621466 Msa0351990:CDS 40.0%
!!! CCACTCTTTCTGGTTTTGTT+TGG + chr3_1:19621607-19621626 None:intergenic 40.0%
CCAAACAAAACCAGAAAGAG+TGG - chr3_1:19621604-19621623 Msa0351990:CDS 40.0%
GTTACAGGAATGGCTTTCTT+CGG - chr3_1:19621877-19621896 Msa0351990:CDS 40.0%
! TATGGCTTGGAAAACAGATG+GGG + chr3_1:19621971-19621990 None:intergenic 40.0%
! GTATGGCTTGGAAAACAGAT+GGG + chr3_1:19621972-19621991 None:intergenic 40.0%
! CATCTGTTTTCCAAGCCATA+CGG - chr3_1:19621971-19621990 Msa0351990:CDS 40.0%
CCTACAAACAGCTTGGTATT+GGG + chr3_1:19622012-19622031 None:intergenic 40.0%
TCCTACAAACAGCTTGGTAT+TGG + chr3_1:19622013-19622032 None:intergenic 40.0%
AATACCAAGCTGTTTGTAGG+AGG - chr3_1:19622012-19622031 Msa0351990:CDS 40.0%
!! TTGAAGACGTGTTTGGTGTT+TGG + chr3_1:19622273-19622292 None:intergenic 40.0%
! GGCATGATAGGGTTTAAAAC+AGG + chr3_1:19622384-19622403 None:intergenic 40.0%
AAACCCTATCATGCCAAGAT+AGG - chr3_1:19622389-19622408 Msa0351990:intron 40.0%
GATCCTATCTTGGCATGATA+GGG + chr3_1:19622395-19622414 None:intergenic 40.0%
AGATCCTATCTTGGCATGAT+AGG + chr3_1:19622396-19622415 None:intergenic 40.0%
AGATATGGCCAAGTTCTTGA+CGG - chr3_1:19622524-19622543 Msa0351990:intron 40.0%
!! TTTCTTTTTCCCTTCTAGGG+GGG - chr3_1:19622567-19622586 Msa0351990:intron 40.0%
AGCTCACAAGCTTCATTCAA+TGG + chr3_1:19623286-19623305 None:intergenic 40.0%
CTTTATCGATAGGCAGTACT+GGG + chr3_1:19623588-19623607 None:intergenic 40.0%
TCTTTATCGATAGGCAGTAC+TGG + chr3_1:19623589-19623608 None:intergenic 40.0%
AATAACAGCATGCAACGACA+AGG + chr3_1:19623629-19623648 None:intergenic 40.0%
CAGATGAGCCTATCAAATGA+AGG + chr3_1:19623655-19623674 None:intergenic 40.0%
TCTGTGAGAAGATATCCATG+TGG - chr3_1:19623671-19623690 Msa0351990:intron 40.0%
TATGGTAACTCTTCATACGG+TGG - chr3_1:19624037-19624056 Msa0351990:CDS 40.0%
! TACAATGATGGAACTACCAG+TGG - chr3_1:19624133-19624152 Msa0351990:intron 40.0%
GGTGGAAACGATGCAAATTA+TGG - chr3_1:19624163-19624182 Msa0351990:intron 40.0%
GGTGGTAACAGTGCAAATTA+TGG - chr3_1:19624673-19624692 Msa0351990:intron 40.0%
GTTAACTATGGTATTGCTCC+TGG - chr3_1:19624901-19624920 Msa0351990:intron 40.0%
! GATAACCATTATAGTACCGG+TGG - chr3_1:19624964-19624983 Msa0351990:intron 40.0%
!! ACTTCCAGGGTATTGATTAC+GGG + chr3_1:19625019-19625038 None:intergenic 40.0%
!! CACTTCCAGGGTATTGATTA+CGG + chr3_1:19625020-19625039 None:intergenic 40.0%
TATGATAGAACTGGAGGACT+TGG - chr3_1:19625093-19625112 Msa0351990:five_prime_UTR 40.0%
CCCTTCTGCAAAATTTCGCT+AGG - chr3_1:19620890-19620909 Msa0351990:CDS 45.0%
! CCCTAGCGAAATTTTGCAGA+AGG + chr3_1:19620894-19620913 None:intergenic 45.0%
TCTGGGTTGTGCGGAAAATT+TGG - chr3_1:19621178-19621197 Msa0351990:CDS 45.0%
! ACGTCTTTGATCAGAGGTGT+TGG - chr3_1:19621355-19621374 Msa0351990:CDS 45.0%
ATGGCTTTCTTCGGTAGAGT+TGG - chr3_1:19621886-19621905 Msa0351990:CDS 45.0%
TGGCTTTCTTCGGTAGAGTT+GGG - chr3_1:19621887-19621906 Msa0351990:CDS 45.0%
! CGTATGGCTTGGAAAACAGA+TGG + chr3_1:19621973-19621992 None:intergenic 45.0%
CCCAATACCAAGCTGTTTGT+AGG - chr3_1:19622009-19622028 Msa0351990:CDS 45.0%
GCAACACATTCACCAGACAT+TGG - chr3_1:19622159-19622178 Msa0351990:intron 45.0%
AAACAGGGGCAAACCCAATA+TGG + chr3_1:19622368-19622387 None:intergenic 45.0%
ACAACTCACCGTCAAGAACT+TGG + chr3_1:19622535-19622554 None:intergenic 45.0%
TTATGGATCGCGAAACTGGT+AGG - chr3_1:19622685-19622704 Msa0351990:intron 45.0%
ACTGGTAGGTCCAAAGGATT+TGG - chr3_1:19622699-19622718 Msa0351990:intron 45.0%
AAGGTCCATCAAAACCACCA+CGG + chr3_1:19623982-19624001 None:intergenic 45.0%
!!! GGTGGTTTTGATGGACCTTA+TGG - chr3_1:19623983-19624002 Msa0351990:intron 45.0%
!! GGTTTTGATGGACCTTATGG+TGG - chr3_1:19623986-19624005 Msa0351990:intron 45.0%
! TTTGATGGACCTTATGGTGG+TGG - chr3_1:19623989-19624008 Msa0351990:intron 45.0%
GGTGGATATTCAGGTGGTTA+TGG - chr3_1:19624019-19624038 Msa0351990:CDS 45.0%
!! TCTTCATACGGTGGTGGATA+TGG - chr3_1:19624046-19624065 Msa0351990:CDS 45.0%
! TATAGTGGTAATGCTGCTGG+AGG - chr3_1:19624082-19624101 Msa0351990:CDS 45.0%
! AATGATGGAACTACCAGTGG+TGG - chr3_1:19624136-19624155 Msa0351990:intron 45.0%
!! GCAAATTATGGTGCTGCTGT+AGG - chr3_1:19624175-19624194 Msa0351990:intron 45.0%
!! AATTATGGTGCTGCTGTAGG+CGG - chr3_1:19624178-19624197 Msa0351990:intron 45.0%
GTTAACTATGGTAGTCCTCC+TGG - chr3_1:19624217-19624236 Msa0351990:intron 45.0%
TTTCCATAACCACCAACACC+AGG + chr3_1:19624238-19624257 None:intergenic 45.0%
!! GCAAATTATGGTGCTGCTGT+AGG - chr3_1:19624175-19624194 Msa0351990:intron 45.0%
!! AATTATGGTGCTGCTGTAGG+CGG - chr3_1:19624178-19624197 Msa0351990:intron 45.0%
! GTTAACTATGGTAGTGCTCC+TGG - chr3_1:19624304-19624323 Msa0351990:intron 45.0%
TTTCCATAACCACCAACACC+AGG + chr3_1:19624238-19624257 None:intergenic 45.0%
GCAAATTATGGTGCAGCTGT+AGG - chr3_1:19624349-19624368 Msa0351990:intron 45.0%
AATTATGGTGCAGCTGTAGG+CGG - chr3_1:19624352-19624371 Msa0351990:intron 45.0%
! GTTAACTATGGTAGTGCTCC+TGG - chr3_1:19624304-19624323 Msa0351990:intron 45.0%
TTTCCATAACCACCAACACC+AGG + chr3_1:19624238-19624257 None:intergenic 45.0%
! GTTAACTATGGTAGTGCTCC+TGG - chr3_1:19624304-19624323 Msa0351990:intron 45.0%
TTTCCATAACCACCAACACC+AGG + chr3_1:19624238-19624257 None:intergenic 45.0%
! GTTAACTATGGTAGTGCTCC+TGG - chr3_1:19624304-19624323 Msa0351990:intron 45.0%
TTACCATAACCACCAACACC+AGG + chr3_1:19624586-19624605 None:intergenic 45.0%
GCTGCTGATACTGCTAACTA+TGG - chr3_1:19624622-19624641 Msa0351990:intron 45.0%
! GTTAACTATGGTAGTGCACC+TGG - chr3_1:19624820-19624839 Msa0351990:intron 45.0%
GGTAACAGTGCCAATTACAG+TGG - chr3_1:19624862-19624881 Msa0351990:intron 45.0%
AACAGTGCCAATTACAGTGG+TGG - chr3_1:19624865-19624884 Msa0351990:intron 45.0%
GCTTTCTCCACCACTGTAAT+TGG + chr3_1:19624875-19624894 None:intergenic 45.0%
TATGGTATTGCTCCTGGTGT+TGG - chr3_1:19624907-19624926 Msa0351990:intron 45.0%
CAACACCACCGGTACTATAA+TGG + chr3_1:19624972-19624991 None:intergenic 45.0%
!! CATTATAGTACCGGTGGTGT+TGG - chr3_1:19624970-19624989 Msa0351990:intron 45.0%
TTACGGGAGAAACCATTGCT+GGG + chr3_1:19625003-19625022 None:intergenic 45.0%
ATTACGGGAGAAACCATTGC+TGG + chr3_1:19625004-19625023 None:intergenic 45.0%
TTCTCCCGTAATCAATACCC+TGG - chr3_1:19625012-19625031 Msa0351990:intron 45.0%
! AATACCCTGGAAGTGCAACA+GGG - chr3_1:19625025-19625044 Msa0351990:intron 45.0%
TATACCCTGTTGCACTTCCA+GGG + chr3_1:19625032-19625051 None:intergenic 45.0%
! GCTGGTGGATATGATAGAAC+TGG - chr3_1:19625084-19625103 Msa0351990:five_prime_UTR 45.0%
GGTGGATATGATAGAACTGG+AGG - chr3_1:19625087-19625106 Msa0351990:five_prime_UTR 45.0%
AGAACTGGAGGACTTGGATA+CGG - chr3_1:19625099-19625118 Msa0351990:five_prime_UTR 45.0%
!! TAAAATCTTAATAAAATAAA+AGG + chr3_1:19621702-19621721 None:intergenic 5.0%
!! TTAAATAATTAATCATTATA+TGG - chr3_1:19623535-19623554 Msa0351990:intron 5.0%
TCACATGTGTTGTGTCGTGC+CGG - chr3_1:19621330-19621349 Msa0351990:CDS 50.0%
CCTCTGATCAAAGACGTGTC+CGG + chr3_1:19621352-19621371 None:intergenic 50.0%
CTCACCTCCTACAAACAGCT+TGG + chr3_1:19622019-19622038 None:intergenic 50.0%
ACTGTGAGAACCCCCAACAA+AGG + chr3_1:19622111-19622130 None:intergenic 50.0%
GTCTGGTGAATGTGTTGCGT+CGG + chr3_1:19622157-19622176 None:intergenic 50.0%
!! TACGGGTTAGTGCCAATGTC+TGG + chr3_1:19622174-19622193 None:intergenic 50.0%
ACTGCACAGCTATGTAGCAC+CGG + chr3_1:19622305-19622324 None:intergenic 50.0%
CAACTGAATCCCCCCTAGAA+GGG + chr3_1:19622579-19622598 None:intergenic 50.0%
TCAACTGAATCCCCCCTAGA+AGG + chr3_1:19622580-19622599 None:intergenic 50.0%
! ATCAAGTGCCATTCAGGCCT+TGG - chr3_1:19622752-19622771 Msa0351990:intron 50.0%
CTGAGTTACCTGTCCATCCA+AGG + chr3_1:19622772-19622791 None:intergenic 50.0%
GCATGCAACGACAAGGATGA+TGG + chr3_1:19623622-19623641 None:intergenic 50.0%
TTTGCCAATGAAAGACCCCG+TGG - chr3_1:19623962-19623981 Msa0351990:intron 50.0%
AGGTCCATCAAAACCACCAC+GGG + chr3_1:19623981-19624000 None:intergenic 50.0%
GGTAACTCTTCATACGGTGG+TGG - chr3_1:19624040-19624059 Msa0351990:CDS 50.0%
! GGTGGATATGGTAATGCTGC+TGG - chr3_1:19624058-19624077 Msa0351990:CDS 50.0%
! GGTAATGCTGCTGGCTATAG+TGG - chr3_1:19624067-19624086 Msa0351990:CDS 50.0%
! GGCTATAGTGGTAATGCTGC+TGG - chr3_1:19624079-19624098 Msa0351990:CDS 50.0%
GGTAATGCTGCTGGAGGTTA+TGG - chr3_1:19624088-19624107 Msa0351990:CDS 50.0%
AATGCTGCTGGAGGTTATGG+CGG - chr3_1:19624091-19624110 Msa0351990:CDS 50.0%
GGAACTACCAGTGGTGGTTA+TGG - chr3_1:19624142-19624161 Msa0351990:intron 50.0%
ACTACCAGTGGTGGTTATGG+TGG - chr3_1:19624145-19624164 Msa0351990:intron 50.0%
GTTTCCACCATAACCACCAC+TGG + chr3_1:19624152-19624171 None:intergenic 50.0%
TATGGTAGTCCTCCTGGTGT+TGG - chr3_1:19624223-19624242 Msa0351990:intron 50.0%
! TATGGTAGTGCTCCTGGTGT+TGG - chr3_1:19624310-19624329 Msa0351990:intron 50.0%
! TATGGTAGTGCTCCTGGTGT+TGG - chr3_1:19624310-19624329 Msa0351990:intron 50.0%
GCAAATTATGGTGCGGCTGT+AGG - chr3_1:19624436-19624455 Msa0351990:intron 50.0%
AATTATGGTGCGGCTGTAGG+CGG - chr3_1:19624439-19624458 Msa0351990:intron 50.0%
! TATGGTAGTGCTCCTGGTGT+TGG - chr3_1:19624310-19624329 Msa0351990:intron 50.0%
GCAAATTATGGTGCGGCTGT+AGG - chr3_1:19624436-19624455 Msa0351990:intron 50.0%
! TATGGTAGTGCTCCTGGTGT+TGG - chr3_1:19624310-19624329 Msa0351990:intron 50.0%
GCAAATTATGGTGCGGCTGT+AGG - chr3_1:19624436-19624455 Msa0351990:intron 50.0%
AATTATGGTGCGGCTGTAGG+TGG - chr3_1:19624439-19624458 Msa0351990:intron 50.0%
GCTCCTGTTGCTGGTGTTTA+CGG - chr3_1:19624742-19624761 Msa0351990:intron 50.0%
! TATGGTAGTGCACCTGGTGT+TGG - chr3_1:19624826-19624845 Msa0351990:intron 50.0%
!! TATGGTGCTGCTGCTGGATT+TGG - chr3_1:19624934-19624953 Msa0351990:intron 50.0%
!! TATAGTACCGGTGGTGTTGG+TGG - chr3_1:19624973-19624992 Msa0351990:intron 50.0%
!! ATAGTACCGGTGGTGTTGGT+GGG - chr3_1:19624974-19624993 Msa0351990:intron 50.0%
! CAATACCCTGGAAGTGCAAC+AGG - chr3_1:19625024-19625043 Msa0351990:intron 50.0%
CTATACCCTGTTGCACTTCC+AGG + chr3_1:19625033-19625052 None:intergenic 50.0%
AGTGCAACAGGGTATAGCAG+TGG - chr3_1:19625036-19625055 Msa0351990:intron 50.0%
GGACTTGGATACGGTGAAAG+TGG - chr3_1:19625108-19625127 Msa0351990:five_prime_UTR 50.0%
CCGGACACGTCTTTGATCAG+AGG - chr3_1:19621349-19621368 Msa0351990:CDS 55.0%
!! CAGAGGTGTTGGTGCTGTAG+AGG - chr3_1:19621366-19621385 Msa0351990:CDS 55.0%
CCAAGCCATACGGTGCTTCT+CGG - chr3_1:19621981-19622000 Msa0351990:CDS 55.0%
CAAGCCATACGGTGCTTCTC+GGG - chr3_1:19621982-19622001 Msa0351990:CDS 55.0%
!! AGTACCCGAGAAGCACCGTA+TGG + chr3_1:19621989-19622008 None:intergenic 55.0%
CTAGGGGGGATTCAGTTGAG+AGG - chr3_1:19622581-19622600 Msa0351990:intron 55.0%
CGCGAAACTGGTAGGTCCAA+AGG - chr3_1:19622693-19622712 Msa0351990:intron 55.0%
!! GGAGGCATCAAGTGCCATTC+AGG - chr3_1:19622746-19622765 Msa0351990:intron 55.0%
! AGTGCCATTCAGGCCTTGGA+TGG - chr3_1:19622756-19622775 Msa0351990:intron 55.0%
CTGTCCATCCAAGGCCTGAA+TGG + chr3_1:19622763-19622782 None:intergenic 55.0%
CATTCAGGCCTTGGATGGAC+AGG - chr3_1:19622761-19622780 Msa0351990:intron 55.0%
ACCACCACGGGGTCTTTCAT+TGG + chr3_1:19623969-19623988 None:intergenic 55.0%
!!! AGACCCCGTGGTGGTTTTGA+TGG - chr3_1:19623974-19623993 Msa0351990:intron 55.0%
GGTCCATCAAAACCACCACG+GGG + chr3_1:19623980-19623999 None:intergenic 55.0%
!! GATGGACCTTATGGTGGTGG+AGG - chr3_1:19623992-19624011 Msa0351990:intron 55.0%
!! GGAGGTGGTGGTGGATATTC+AGG - chr3_1:19624010-19624029 Msa0351990:CDS 55.0%
!! GGTGGTGGTGGATATTCAGG+TGG - chr3_1:19624013-19624032 Msa0351990:CDS 55.0%
! GGTTATGGCGGAGGTGGTTA+TGG - chr3_1:19624103-19624122 Msa0351990:CDS 55.0%
CCATAACCACCAACACCAGG+AGG + chr3_1:19624235-19624254 None:intergenic 55.0%
!! CCTCCTGGTGTTGGTGGTTA+TGG - chr3_1:19624232-19624251 Msa0351990:intron 55.0%
!! GCTCCTGGTGTTGGTGGTTA+TGG - chr3_1:19624319-19624338 Msa0351990:intron 55.0%
!! GCTCCTGGTGTTGGTGGTTA+TGG - chr3_1:19624319-19624338 Msa0351990:intron 55.0%
!! GCTCCTGGTGTTGGTGGTTA+TGG - chr3_1:19624319-19624338 Msa0351990:intron 55.0%
!! GCTCCTGGTGTTGGTGGTTA+TGG - chr3_1:19624319-19624338 Msa0351990:intron 55.0%
GCTAACTATGGCAGTGCTCC+TGG - chr3_1:19624634-19624653 Msa0351990:intron 55.0%
TATGGCAGTGCTCCTGGTGT+TGG - chr3_1:19624640-19624659 Msa0351990:intron 55.0%
!! GCTCCTGGTGTTGGTGGTTA+TGG - chr3_1:19624319-19624338 Msa0351990:intron 55.0%
CCACCATAACCACCAACACC+AGG + chr3_1:19624655-19624674 None:intergenic 55.0%
!! CCTGGTGTTGGTGGTTATGG+TGG - chr3_1:19624235-19624254 Msa0351990:intron 55.0%
!! GGTGTTGGTGGTTATGGTGG+TGG - chr3_1:19624655-19624674 Msa0351990:intron 55.0%
TACGGTAGTGCTCCTGTTGC+TGG - chr3_1:19624733-19624752 Msa0351990:intron 55.0%
CCACCGTAAACACCAGCAAC+AGG + chr3_1:19624748-19624767 None:intergenic 55.0%
CCTGTTGCTGGTGTTTACGG+TGG - chr3_1:19624745-19624764 Msa0351990:intron 55.0%
!! GCACCTGGTGTTGGTGGTTA+TGG - chr3_1:19624835-19624854 Msa0351990:intron 55.0%
CCACCATAACCACCAACACC+AGG + chr3_1:19624655-19624674 None:intergenic 55.0%
!! CCTGGTGTTGGTGGTTATGG+TGG - chr3_1:19624235-19624254 Msa0351990:intron 55.0%
!! GGTGTTGGTGGTTATGGTGG+TGG - chr3_1:19624655-19624674 Msa0351990:intron 55.0%
! GGTATTGCTCCTGGTGTTGG+TGG - chr3_1:19624910-19624929 Msa0351990:intron 55.0%
!! GCTCCTGGTGTTGGTGGTTA+TGG - chr3_1:19624319-19624338 Msa0351990:intron 55.0%
GCACCATAACCACCAACACC+AGG + chr3_1:19624922-19624941 None:intergenic 55.0%
!! TAGTACCGGTGGTGTTGGTG+GGG - chr3_1:19624975-19624994 Msa0351990:intron 55.0%
!! CCGAGAAGCACCGTATGGCT+TGG + chr3_1:19621984-19622003 None:intergenic 60.0%
GATCTGCATGGTCGCCGAGT+TGG - chr3_1:19623932-19623951 Msa0351990:intron 60.0%
GCCAATGAAAGACCCCGTGG+TGG - chr3_1:19623965-19623984 Msa0351990:intron 60.0%
!! GGACCTTATGGTGGTGGAGG+TGG - chr3_1:19623995-19624014 Msa0351990:CDS 60.0%
CCACCACCTCCACCACCATA+AGG + chr3_1:19624001-19624020 None:intergenic 60.0%
!! CCTTATGGTGGTGGAGGTGG+TGG - chr3_1:19623998-19624017 Msa0351990:CDS 60.0%
!! TATGGTGGTGGAGGTGGTGG+TGG - chr3_1:19624001-19624020 Msa0351990:CDS 60.0%
!! TATGGTGCTGCTGTAGGCGG+TGG - chr3_1:19624181-19624200 Msa0351990:intron 60.0%
! GGTAGTCCTCCTGGTGTTGG+TGG - chr3_1:19624226-19624245 Msa0351990:intron 60.0%
!! TATGGTGCTGCTGTAGGCGG+TGG - chr3_1:19624181-19624200 Msa0351990:intron 60.0%
! GGTAGTGCTCCTGGTGTTGG+TGG - chr3_1:19624313-19624332 Msa0351990:intron 60.0%
TATGGTGCAGCTGTAGGCGG+TGG - chr3_1:19624355-19624374 Msa0351990:intron 60.0%
! GGTAGTGCTCCTGGTGTTGG+TGG - chr3_1:19624313-19624332 Msa0351990:intron 60.0%
! GGTAGTGCTCCTGGTGTTGG+TGG - chr3_1:19624313-19624332 Msa0351990:intron 60.0%
TATGGTGCGGCTGTAGGCAG+TGG - chr3_1:19624529-19624548 Msa0351990:intron 60.0%
! GGTAGTGCTCCTGGTGTTGG+TGG - chr3_1:19624313-19624332 Msa0351990:intron 60.0%
TATGGTGCGGCTGTAGGTGG+TGG - chr3_1:19624691-19624710 Msa0351990:intron 60.0%
! GGTAGTGCACCTGGTGTTGG+TGG - chr3_1:19624829-19624848 Msa0351990:intron 60.0%
!! GGTGGTTATGGTGCTGCTGC+TGG - chr3_1:19624928-19624947 Msa0351990:intron 60.0%
!! AGTACCGGTGGTGTTGGTGG+GGG - chr3_1:19624976-19624995 Msa0351990:intron 60.0%
AGCAGTGGCAGTTCAGCTCC+CGG - chr3_1:19625051-19625070 Msa0351990:intron 60.0%
TCCACCAGCAAAGCTGCTCC+CGG + chr3_1:19625073-19625092 None:intergenic 60.0%
GCTGCTGGAGGTTATGGCGG+AGG - chr3_1:19624094-19624113 Msa0351990:CDS 65.0%
! GCTGGAGGTTATGGCGGAGG+TGG - chr3_1:19624097-19624116 Msa0351990:CDS 65.0%
TATGGTGCGGCTGTAGGCGG+TGG - chr3_1:19624442-19624461 Msa0351990:intron 65.0%
! GGCAGTGCTCCTGGTGTTGG+TGG - chr3_1:19624643-19624662 Msa0351990:intron 65.0%
! GTTGGTGGGGGTCCCAGCAA+TGG - chr3_1:19624988-19625007 Msa0351990:intron 65.0%
GCAGTGGCAGTTCAGCTCCC+GGG - chr3_1:19625052-19625071 Msa0351990:intron 65.0%
CCACCAGCAAAGCTGCTCCC+GGG + chr3_1:19625072-19625091 None:intergenic 65.0%
GGGACCCCCACCAACACCAC+CGG + chr3_1:19624983-19625002 None:intergenic 70.0%
GCTCCCGGGAGCAGCTTTGC+TGG - chr3_1:19625066-19625085 Msa0351990:five_prime_UTR 70.0%
CCCGGGAGCAGCTTTGCTGG+TGG - chr3_1:19625069-19625088 Msa0351990:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 19620840 19625188 19620840 ID=Msa0351990;Name=Msa0351990
chr3_1 mRNA 19620840 19625188 19620840 ID=Msa0351990-mRNA-1;Parent=Msa0351990;Name=Msa0351990-mRNA-1;_AED=0.13;_eAED=0.19;_QI=137|1|0.8|1|0.75|0.6|5|0|526
chr3_1 exon 19620840 19622096 19620840 ID=Msa0351990-mRNA-1:exon:4599;Parent=Msa0351990-mRNA-1
chr3_1 exon 19623246 19623352 19623246 ID=Msa0351990-mRNA-1:exon:4598;Parent=Msa0351990-mRNA-1
chr3_1 exon 19623483 19623551 19623483 ID=Msa0351990-mRNA-1:exon:4597;Parent=Msa0351990-mRNA-1
chr3_1 exon 19623995 19624144 19623995 ID=Msa0351990-mRNA-1:exon:4596;Parent=Msa0351990-mRNA-1
chr3_1 exon 19625054 19625188 19625054 ID=Msa0351990-mRNA-1:exon:4595;Parent=Msa0351990-mRNA-1
chr3_1 five_prime_UTR 19625054 19625188 19625054 ID=Msa0351990-mRNA-1:five_prime_utr;Parent=Msa0351990-mRNA-1
chr3_1 five_prime_UTR 19624143 19624144 19624143 ID=Msa0351990-mRNA-1:five_prime_utr;Parent=Msa0351990-mRNA-1
chr3_1 CDS 19623995 19624142 19623995 ID=Msa0351990-mRNA-1:cds;Parent=Msa0351990-mRNA-1
chr3_1 CDS 19623483 19623551 19623483 ID=Msa0351990-mRNA-1:cds;Parent=Msa0351990-mRNA-1
chr3_1 CDS 19623246 19623352 19623246 ID=Msa0351990-mRNA-1:cds;Parent=Msa0351990-mRNA-1
chr3_1 CDS 19620840 19622096 19620840 ID=Msa0351990-mRNA-1:cds;Parent=Msa0351990-mRNA-1
Gene Sequence

>Msa0351990

ATGGCTTTCTTCGGTAGAGTTGGGAGTTTATTAAGGAATGCAGCAAATACGAAGATCACTTCTGAGTTGAAGTTACGTTCTTCCCCATCTGTTTTCCAAGCCATACGGTGCTTCTCGGGTACTCCCAATACCAAGCTGTTTGTAGGAGGTATTTCGTATGATACTGATGAACAAAGTTTGAGCGATGCTTTTTCAAGATATGGCCAAGTTCTTGACGCAAGGATAATTATGGATCGCGAAACTGGTAGGTCCAAAGGATTTGGCTTTGTTACTTACAATACTGTTGAGGAGGCATCAAGTGCCATTCAGGCCTTGGATGGACAGGATCTGCATGGTCGCCGAGTTGGTGTAAATTTTGCCAATGAAAGACCCCGTGGTGGTTTTGATGGACCTTATGGTGGTGGAGGTGGTGGTGGATATTCAGGTGGTTATGGTAACTCTTCATACGGTGGTGGATATGGTAATGCTGCTGGCTATAGTGGTAATGCTGCTGGAGGTTATGGCGGAGGTGGTTATGGAAACACTTACAATGATGGAACTACCAGTGGTGGTTATGGTGGAAACGATGCAAATTATGGTGCTGCTGTAGGCGGTGGTGAAAGCAATGCTGTTAACTATGGTAGTCCTCCTGGTGTTGGTGGTTATGGAAACAATGCAAATTATGGTGCTGCTGTAGGCGGTGGTGAAAGCAATGCTGTTAACTATGGTAGTGCTCCTGGTGTTGGTGGTTATGGAAACAATGCAAATTATGGTGCAGCTGTAGGCGGTGGTGAAAGCAATGCTGTTAACTATGGTAGTGCTCCTGGTGTTGGTGGTTATGGAAACAATGCAAATTATGGTGCGGCTGTAGGCGGTGGTGAAAGCAATGCTGTTAACTATGGTAGTGCTCCTGGTGTTGGTGGTTATGGAAACAATGCAAATTATGGTGCGGCTGTAGGCAGTGGTGAAAGCAATGCTGTTAACTATGGTAGTGCTCCTGGTGTTGGTGGTTATGGTAACAATGTGAATTATGGTGCTGCTGATACTGCTAACTATGGCAGTGCTCCTGGTGTTGGTGGTTATGGTGGTGGTAACAGTGCAAATTATGGTGCGGCTGTAGGTGGTGGAGAAAGCAATTCTGTTAACTACGGTAGTGCTCCTGTTGCTGGTGTTTACGGTGGTGCTAACAATGTAAATTATGGTACTGCTGTAGGTGCTAGAGAAAGCAATTCTGTTAACTATGGTAGTGCACCTGGTGTTGGTGGTTATGGTGGTGGTAACAGTGCCAATTACAGTGGTGGAGAAAGCAATTCTGTTAACTATGGTATTGCTCCTGGTGTTGGTGGTTATGGTGCTGCTGCTGGATTTGGCAAGAGTGATAACCATTATAGTACCGGTGGTGTTGGTGGGGGTCCCAGCAATGGTTTCTCCCGTAATCAATACCCTGGAAGTGCAACAGGGTATAGCAGTGGCAGTTCAGCTCCCGGGAGCAGCTTTGCTGGTGGATATGATAGAACTGGAGGACTTGGATACGGTGAAAGTGGTCAAGAAGATTTCAAGAACGATGATCATGAAGTTGATGCTTTTGCTAAACGGGCTTGA
Protein sequence

>Msa0351990

MAFFGRVGSLLRNAANTKITSELKLRSSPSVFQAIRCFSGTPNTKLFVGGISYDTDEQSLSDAFSRYGQVLDARIIMDRETGRSKGFGFVTYNTVEEASSAIQALDGQDLHGRRVGVNFANERPRGGFDGPYGGGGGGGYSGGYGNSSYGGGYGNAAGYSGNAAGGYGGGGYGNTYNDGTTSGGYGGNDANYGAAVGGGESNAVNYGSPPGVGGYGNNANYGAAVGGGESNAVNYGSAPGVGGYGNNANYGAAVGGGESNAVNYGSAPGVGGYGNNANYGAAVGGGESNAVNYGSAPGVGGYGNNANYGAAVGSGESNAVNYGSAPGVGGYGNNVNYGAADTANYGSAPGVGGYGGGNSANYGAAVGGGESNSVNYGSAPVAGVYGGANNVNYGTAVGARESNSVNYGSAPGVGGYGGGNSANYSGGESNSVNYGIAPGVGGYGAAAGFGKSDNHYSTGGVGGGPSNGFSRNQYPGSATGYSSGSSAPGSSFAGGYDRTGGLGYGESGQEDFKNDDHEVDAFAKRA*