Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544240 | XP_003604611.1 | 81.667 | 120 | 19 | 1 | 1 | 120 | 987 | 1103 | 2.52e-57 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544240 | G7JLX5 | 81.667 | 120 | 19 | 1 | 1 | 120 | 987 | 1103 | 1.20e-57 | 204 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016570 | Msa0544240 | 0.806597 | 7.613015e-50 | -8.615850e-47 |
| Msa0016580 | Msa0544240 | 0.809972 | 1.452483e-50 | -8.615850e-47 |
| Msa0026450 | Msa0544240 | 0.804557 | 2.040662e-49 | -8.615850e-47 |
| Msa0110270 | Msa0544240 | 0.804789 | 1.824907e-49 | -8.615850e-47 |
| Msa0142220 | Msa0544240 | 0.827478 | 1.530664e-54 | -8.615850e-47 |
| Msa0145260 | Msa0544240 | 0.822095 | 2.845376e-53 | -8.615850e-47 |
| Msa0381610 | Msa0544240 | -0.803488 | 3.404169e-49 | -8.615850e-47 |
| Msa0290870 | Msa0544240 | 0.803255 | 3.804636e-49 | -8.615850e-47 |
| Msa0544240 | Msa0729800 | 0.824419 | 8.154108e-54 | -8.615850e-47 |
| Msa0544240 | Msa0731940 | 0.817157 | 3.815171e-52 | -8.615850e-47 |
| Msa0544240 | Msa0766630 | 0.805339 | 1.400059e-49 | -8.615850e-47 |
| Msa0544240 | Msa0789250 | 0.800804 | 1.213922e-48 | -8.615850e-47 |
| Msa0544240 | Msa0811080 | 0.806204 | 9.215131e-50 | -8.615850e-47 |
| Msa0544240 | Msa0974080 | 0.802160 | 6.399759e-49 | -8.615850e-47 |
| Msa0544240 | Msa1023050 | 0.814951 | 1.185944e-51 | -8.615850e-47 |
| Msa0544240 | Msa1023950 | 0.810864 | 9.326029e-51 | -8.615850e-47 |
| Msa0544240 | Msa1113170 | 0.812991 | 3.209120e-51 | -8.615850e-47 |
| Msa0544240 | Msa1117150 | 0.810708 | 1.007877e-50 | -8.615850e-47 |
| Msa0544240 | Msa1121480 | 0.803324 | 3.681047e-49 | -8.615850e-47 |
| Msa0544240 | Msa1121490 | 0.803411 | 3.531621e-49 | -8.615850e-47 |
| Msa0544240 | Msa1253000 | 0.810700 | 1.011596e-50 | -8.615850e-47 |
| Msa0544240 | Msa1373030 | 0.813574 | 2.389772e-51 | -8.615850e-47 |
| Msa0544240 | Msa1397580 | 0.800917 | 1.150573e-48 | -8.615850e-47 |
| Msa0544240 | Msa1466540 | 0.825927 | 3.589370e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0544240 | MtrunA17_Chr4g0005871 | 81.667 | 120 | 19 | 1 | 1 | 120 | 1056 | 1172 | 2.66e-61 | 204 |
| Msa0544240 | MtrunA17_Chr4g0005851 | 79.167 | 120 | 25 | 0 | 1 | 120 | 966 | 1085 | 3.17e-61 | 204 |
| Msa0544240 | MtrunA17_Chr4g0005591 | 74.576 | 118 | 28 | 1 | 1 | 118 | 1008 | 1123 | 9.93e-54 | 183 |
| Msa0544240 | MtrunA17_Chr4g0005891 | 69.492 | 118 | 35 | 1 | 1 | 118 | 980 | 1096 | 1.99e-43 | 153 |
| Msa0544240 | MtrunA17_Chr6g0454821 | 58.519 | 135 | 55 | 1 | 1 | 135 | 973 | 1106 | 1.29e-42 | 151 |
| Msa0544240 | MtrunA17_Chr3g0135571 | 56.897 | 116 | 50 | 0 | 1 | 116 | 45 | 160 | 4.70e-40 | 134 |
| Msa0544240 | MtrunA17_Chr3g0135511 | 56.034 | 116 | 51 | 0 | 1 | 116 | 45 | 160 | 8.80e-39 | 130 |
| Msa0544240 | MtrunA17_Chr3g0135541 | 56.897 | 116 | 50 | 0 | 1 | 116 | 197 | 312 | 8.97e-39 | 134 |
| Msa0544240 | MtrunA17_Chr7g0257531 | 61.818 | 110 | 41 | 1 | 1 | 109 | 580 | 689 | 1.57e-37 | 136 |
| Msa0544240 | MtrunA17_Chr6g0454951 | 57.143 | 119 | 51 | 0 | 1 | 119 | 1017 | 1135 | 6.58e-37 | 135 |
| Msa0544240 | MtrunA17_Chr6g0454961 | 51.799 | 139 | 45 | 1 | 1 | 117 | 968 | 1106 | 1.58e-36 | 134 |
| Msa0544240 | MtrunA17_Chr4g0010711 | 60.748 | 107 | 41 | 1 | 1 | 106 | 1440 | 1546 | 2.78e-35 | 130 |
| Msa0544240 | MtrunA17_Chr4g0014821 | 51.261 | 119 | 57 | 1 | 1 | 119 | 41 | 158 | 5.38e-35 | 120 |
| Msa0544240 | MtrunA17_Chr6g0455551 | 58.716 | 109 | 44 | 1 | 1 | 108 | 1016 | 1124 | 4.01e-33 | 124 |
| Msa0544240 | MtrunA17_Chr6g0454861 | 57.732 | 97 | 41 | 0 | 1 | 97 | 2 | 98 | 5.56e-33 | 113 |
| Msa0544240 | MtrunA17_Chr6g0454851 | 56.757 | 111 | 48 | 0 | 1 | 111 | 1023 | 1133 | 2.94e-32 | 121 |
| Msa0544240 | MtrunA17_Chr6g0454911 | 57.732 | 97 | 41 | 0 | 1 | 97 | 158 | 254 | 5.60e-32 | 115 |
| Msa0544240 | MtrunA17_Chr4g0009011 | 48.113 | 106 | 55 | 0 | 1 | 106 | 211 | 316 | 8.87e-32 | 117 |
| Msa0544240 | MtrunA17_Chr4g0009041 | 50.427 | 117 | 48 | 1 | 1 | 107 | 1431 | 1547 | 7.30e-31 | 117 |
| Msa0544240 | MtrunA17_Chr4g0009101 | 50.467 | 107 | 53 | 0 | 1 | 107 | 1459 | 1565 | 3.78e-30 | 115 |
| Msa0544240 | MtrunA17_Chr4g0009301 | 50.000 | 106 | 52 | 1 | 1 | 105 | 1463 | 1568 | 4.76e-30 | 115 |
| Msa0544240 | MtrunA17_Chr4g0009171 | 46.847 | 111 | 58 | 1 | 1 | 110 | 1648 | 1758 | 6.22e-30 | 115 |
| Msa0544240 | MtrunA17_Chr6g0455211 | 56.566 | 99 | 43 | 0 | 1 | 99 | 965 | 1063 | 6.51e-30 | 115 |
| Msa0544240 | MtrunA17_Chr4g0009211 | 47.015 | 134 | 59 | 4 | 1 | 133 | 11 | 133 | 1.13e-29 | 106 |
| Msa0544240 | MtrunA17_Chr7g0234901 | 53.271 | 107 | 49 | 1 | 1 | 106 | 455 | 561 | 1.17e-29 | 114 |
| Msa0544240 | MtrunA17_Chr6g0455251 | 50.833 | 120 | 48 | 1 | 1 | 120 | 1045 | 1153 | 1.41e-29 | 114 |
| Msa0544240 | MtrunA17_Chr4g0009401 | 51.402 | 107 | 51 | 1 | 1 | 106 | 1425 | 1531 | 8.53e-29 | 111 |
| Msa0544240 | MtrunA17_Chr6g0455191 | 50.833 | 120 | 44 | 2 | 1 | 120 | 1248 | 1352 | 1.12e-28 | 111 |
| Msa0544240 | MtrunA17_Chr6g0455221 | 50.000 | 120 | 49 | 1 | 1 | 120 | 1036 | 1144 | 2.06e-28 | 110 |
| Msa0544240 | MtrunA17_Chr7g0255681 | 57.576 | 99 | 41 | 1 | 1 | 98 | 1947 | 2045 | 2.78e-28 | 110 |
| Msa0544240 | MtrunA17_Chr6g0455131 | 60.976 | 82 | 32 | 0 | 1 | 82 | 1025 | 1106 | 1.79e-27 | 107 |
| Msa0544240 | MtrunA17_Chr4g0009141 | 47.273 | 110 | 57 | 1 | 1 | 109 | 1443 | 1552 | 2.25e-27 | 107 |
| Msa0544240 | MtrunA17_Chr6g0454971 | 46.667 | 120 | 53 | 1 | 1 | 120 | 963 | 1071 | 3.89e-27 | 107 |
| Msa0544240 | MtrunA17_Chr4g0009241 | 47.664 | 107 | 55 | 1 | 1 | 106 | 1447 | 1553 | 3.94e-27 | 107 |
| Msa0544240 | MtrunA17_Chr4g0008981 | 48.039 | 102 | 52 | 1 | 4 | 104 | 14 | 115 | 7.65e-27 | 99.4 |
| Msa0544240 | MtrunA17_Chr6g0454881 | 53.333 | 90 | 41 | 1 | 21 | 109 | 1 | 90 | 4.27e-26 | 95.5 |
| Msa0544240 | MtrunA17_Chr8g0352211 | 58.333 | 84 | 35 | 0 | 1 | 84 | 852 | 935 | 4.16e-25 | 101 |
| Msa0544240 | MtrunA17_Chr6g0454831 | 51.546 | 97 | 47 | 0 | 1 | 97 | 938 | 1034 | 1.03e-24 | 100 |
| Msa0544240 | MtrunA17_Chr8g0352221 | 45.161 | 124 | 63 | 2 | 1 | 119 | 839 | 962 | 1.55e-24 | 99.4 |
| Msa0544240 | MtrunA17_Chr8g0338931 | 41.935 | 124 | 67 | 2 | 1 | 119 | 60 | 183 | 3.08e-24 | 95.9 |
| Msa0544240 | MtrunA17_Chr5g0414761 | 48.315 | 89 | 46 | 0 | 1 | 89 | 708 | 796 | 5.65e-22 | 92.0 |
| Msa0544240 | MtrunA17_Chr8g0343781 | 53.947 | 76 | 35 | 0 | 1 | 76 | 6 | 81 | 6.11e-22 | 84.7 |
| Msa0544240 | MtrunA17_Chr8g0338841 | 44.444 | 108 | 57 | 1 | 1 | 105 | 366 | 473 | 4.01e-21 | 89.4 |
| Msa0544240 | MtrunA17_Chr3g0114381 | 46.667 | 90 | 48 | 0 | 1 | 90 | 157 | 246 | 1.38e-20 | 86.3 |
| Msa0544240 | MtrunA17_Chr2g0296451 | 53.659 | 82 | 38 | 0 | 1 | 82 | 441 | 522 | 1.74e-20 | 87.8 |
| Msa0544240 | MtrunA17_Chr8g0339011 | 47.561 | 82 | 43 | 0 | 1 | 82 | 917 | 998 | 3.46e-20 | 87.0 |
| Msa0544240 | MtrunA17_Chr8g0338981 | 44.944 | 89 | 49 | 0 | 1 | 89 | 921 | 1009 | 5.11e-20 | 86.7 |
| Msa0544240 | MtrunA17_Chr4g0009361 | 52.500 | 80 | 38 | 0 | 1 | 80 | 439 | 518 | 7.92e-20 | 85.9 |
| Msa0544240 | MtrunA17_Chr8g0338901 | 36.879 | 141 | 68 | 3 | 1 | 121 | 944 | 1083 | 9.47e-20 | 85.9 |
| Msa0544240 | MtrunA17_Chr8g0338881 | 44.444 | 90 | 49 | 1 | 1 | 89 | 952 | 1041 | 2.38e-19 | 84.7 |
| Msa0544240 | MtrunA17_Chr8g0338801 | 50.617 | 81 | 39 | 1 | 1 | 80 | 120 | 200 | 2.93e-19 | 83.2 |
| Msa0544240 | MtrunA17_Chr6g0455141 | 51.562 | 64 | 31 | 0 | 53 | 116 | 1 | 64 | 3.76e-19 | 77.4 |
| Msa0544240 | MtrunA17_Chr8g0370511 | 40.164 | 122 | 55 | 2 | 1 | 107 | 922 | 1040 | 3.84e-19 | 84.0 |
| Msa0544240 | MtrunA17_Chr8g0339031 | 46.341 | 82 | 44 | 0 | 1 | 82 | 929 | 1010 | 6.84e-19 | 83.2 |
| Msa0544240 | MtrunA17_Chr5g0420341 | 46.988 | 83 | 44 | 0 | 1 | 83 | 923 | 1005 | 8.25e-19 | 83.2 |
| Msa0544240 | MtrunA17_Chr3g0085531 | 50.000 | 80 | 40 | 0 | 3 | 82 | 122 | 201 | 2.56e-18 | 80.9 |
| Msa0544240 | MtrunA17_Chr5g0420331 | 45.783 | 83 | 45 | 0 | 1 | 83 | 923 | 1005 | 2.95e-18 | 81.6 |
| Msa0544240 | MtrunA17_Chr8g0339021 | 37.500 | 128 | 70 | 2 | 1 | 118 | 912 | 1039 | 4.12e-18 | 80.9 |
| Msa0544240 | MtrunA17_Chr6g0455031 | 47.872 | 94 | 35 | 3 | 1 | 81 | 940 | 1032 | 4.16e-18 | 80.9 |
| Msa0544240 | MtrunA17_Chr7g0223531 | 46.067 | 89 | 48 | 0 | 1 | 89 | 938 | 1026 | 6.18e-18 | 80.5 |
| Msa0544240 | MtrunA17_Chr3g0085731 | 48.750 | 80 | 41 | 0 | 3 | 82 | 932 | 1011 | 5.51e-17 | 77.8 |
| Msa0544240 | MtrunA17_Chr5g0430541 | 46.341 | 82 | 44 | 0 | 1 | 82 | 432 | 513 | 1.91e-16 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGATAGTGATATCAAATT+TGG | 0.274984 | 4_1:-32447954 | Msa0544240:CDS |
| AGGAGAGACCTGTGCCCTTA+TGG | 0.319375 | 4_1:-32447229 | Msa0544240:CDS |
| GTCGAGATTGCTGTTGTGTT+CGG | 0.350755 | 4_1:-32447917 | Msa0544240:CDS |
| AGGTCTCTCCTAAACAGTTT+TGG | 0.365438 | 4_1:+32447241 | None:intergenic |
| GGTAGGTTCCAAAACTGTTT+AGG | 0.365576 | 4_1:-32447249 | Msa0544240:CDS |
| TCGAGATTGCTGTTGTGTTC+GGG | 0.366136 | 4_1:-32447916 | Msa0544240:CDS |
| CTGCAGCTGGACTGTATTTG+TGG | 0.394855 | 4_1:-32447143 | Msa0544240:CDS |
| CATCTGATGTTGTGTCATAT+TGG | 0.432261 | 4_1:+32448068 | None:intergenic |
| AACTCCTACCCTACTGCAGC+TGG | 0.454699 | 4_1:-32447156 | Msa0544240:CDS |
| TAAAAGTGCATTACCAAGAC+TGG | 0.462027 | 4_1:+32447107 | None:intergenic |
| CCAATGTATCCTCAACCATA+AGG | 0.466582 | 4_1:+32447214 | None:intergenic |
| GCTGGACTGTATTTGTGGGC+TGG | 0.493965 | 4_1:-32447138 | Msa0544240:CDS |
| CAATGTATCCTCAACCATAA+GGG | 0.501959 | 4_1:+32447215 | None:intergenic |
| TGCAGCTGGACTGTATTTGT+GGG | 0.515123 | 4_1:-32447142 | Msa0544240:CDS |
| GACCTGTGCCCTTATGGTTG+AGG | 0.529920 | 4_1:-32447223 | Msa0544240:CDS |
| GTTATCCTCCTTCGAAAATG+AGG | 0.556386 | 4_1:-32447981 | Msa0544240:CDS |
| ATGGTTGAGGATACATTGGT+GGG | 0.558752 | 4_1:-32447210 | Msa0544240:CDS |
| CAGTCCAGCTGCAGTAGGGT+AGG | 0.559076 | 4_1:+32447152 | None:intergenic |
| CCTTATGGTTGAGGATACAT+TGG | 0.569550 | 4_1:-32447214 | Msa0544240:CDS |
| CTCTCTCTTATAGAGTTGAA+TGG | 0.573726 | 4_1:+32448006 | None:intergenic |
| TATGGTTGAGGATACATTGG+TGG | 0.575721 | 4_1:-32447211 | Msa0544240:CDS |
| ATCCTCAACCATAAGGGCAC+AGG | 0.577195 | 4_1:+32447221 | None:intergenic |
| AAATACAGTCCAGCTGCAGT+AGG | 0.583484 | 4_1:+32447147 | None:intergenic |
| CAATATGACACAACATCAGA+TGG | 0.585108 | 4_1:-32448067 | Msa0544240:CDS |
| GTGATATCAAATTTGGAACC+TGG | 0.597208 | 4_1:-32447947 | Msa0544240:CDS |
| GGAACAGTTTCATTGTGATG+AGG | 0.598711 | 4_1:-32447895 | Msa0544240:CDS |
| AAAATGAATGCGCTGCCAAG+AGG | 0.598947 | 4_1:-32447778 | Msa0544240:CDS |
| AATACAGTCCAGCTGCAGTA+GGG | 0.607232 | 4_1:+32447148 | None:intergenic |
| TCTCTTCAAGTAGATCCCGC+AGG | 0.627536 | 4_1:-32447752 | Msa0544240:intron |
| TACTTGAAGAGAGATCCTCT+TGG | 0.629414 | 4_1:+32447763 | None:intergenic |
| GCAATCTCGACTTTGTCACC+AGG | 0.634825 | 4_1:+32447929 | None:intergenic |
| TCTCTTATAGAGTTGAATGG+TGG | 0.641728 | 4_1:+32448009 | None:intergenic |
| ATCATATATGAGATAAACTG+TGG | 0.662944 | 4_1:+32447871 | None:intergenic |
| CATTCAACTCTATAAGAGAG+AGG | 0.673598 | 4_1:-32448005 | Msa0544240:CDS |
| GTTGAGCGAAACAATGTGTG+CGG | 0.678917 | 4_1:+32447176 | None:intergenic |
| CCTCCTTCGAAAATGAGGAG+TGG | 0.690770 | 4_1:-32447976 | Msa0544240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGAAGTATTAAATGATTA+AGG | - | chr4_1:32447697-32447716 | Msa0544240:intron | 15.0% |
| !! | TTAAATGATTAAGGTTATTA+TGG | - | chr4_1:32447706-32447725 | Msa0544240:intron | 15.0% |
| !! | TAAATGATTAAGGTTATTAT+GGG | - | chr4_1:32447707-32447726 | Msa0544240:intron | 15.0% |
| !!! | AATGAAGTATTAAATGATTA+AGG | - | chr4_1:32447697-32447716 | Msa0544240:intron | 15.0% |
| !! | TTAAATGATTAAGGTTATTA+TGG | - | chr4_1:32447706-32447725 | Msa0544240:intron | 15.0% |
| !! | TAAATGATTAAGGTTATTAT+GGG | - | chr4_1:32447707-32447726 | Msa0544240:intron | 15.0% |
| !! | TAAATATATAGGGGTAATAT+AGG | + | chr4_1:32447655-32447674 | None:intergenic | 20.0% |
| !! | TCAAAATGTGACAATTAAAA+AGG | - | chr4_1:32447793-32447812 | Msa0544240:CDS | 20.0% |
| !!! | AATTTGAGTTTATTTTTGAC+CGG | - | chr4_1:32447835-32447854 | Msa0544240:CDS | 20.0% |
| !! | AAAATTAGAAAGGAATAGAA+TGG | + | chr4_1:32447886-32447905 | None:intergenic | 20.0% |
| !!! | TATTCCTTTCTAATTTTGAT+TGG | - | chr4_1:32447889-32447908 | Msa0544240:CDS | 20.0% |
| !! | TAAATATATAGGGGTAATAT+AGG | + | chr4_1:32447655-32447674 | None:intergenic | 20.0% |
| !! | TCAAAATGTGACAATTAAAA+AGG | - | chr4_1:32447793-32447812 | Msa0544240:CDS | 20.0% |
| !!! | AATTTGAGTTTATTTTTGAC+CGG | - | chr4_1:32447835-32447854 | Msa0544240:CDS | 20.0% |
| !! | AAAATTAGAAAGGAATAGAA+TGG | + | chr4_1:32447886-32447905 | None:intergenic | 20.0% |
| !!! | TATTCCTTTCTAATTTTGAT+TGG | - | chr4_1:32447889-32447908 | Msa0544240:CDS | 20.0% |
| !! | TTATCAACAACACATTTTCA+AGG | + | chr4_1:32447172-32447191 | None:intergenic | 25.0% |
| ! | ATCATATATGAGATAAACTG+TGG | + | chr4_1:32447345-32447364 | None:intergenic | 25.0% |
| !! | TGCTCAAATTTTTCATTGAT+TGG | + | chr4_1:32447371-32447390 | None:intergenic | 25.0% |
| !! | TCAACAATAACATTTTCATC+TGG | + | chr4_1:32447404-32447423 | None:intergenic | 25.0% |
| !!! | TTTTTGTTTTAAATCACCTG+CGG | + | chr4_1:32447480-32447499 | None:intergenic | 25.0% |
| ! | AAGTGACAATTATAAAGGAA+CGG | + | chr4_1:32447563-32447582 | None:intergenic | 25.0% |
| ! | TGCAAAAGTGACAATTATAA+AGG | + | chr4_1:32447568-32447587 | None:intergenic | 25.0% |
| ! | TCTCTGCAATAAATATATAG+GGG | + | chr4_1:32447664-32447683 | None:intergenic | 25.0% |
| ! | CTCTCTGCAATAAATATATA+GGG | + | chr4_1:32447665-32447684 | None:intergenic | 25.0% |
| ! | TCTCTCTGCAATAAATATAT+AGG | + | chr4_1:32447666-32447685 | None:intergenic | 25.0% |
| !!! | AGTAAAAGTATTTGTTGTCT+TGG | - | chr4_1:32447757-32447776 | Msa0544240:CDS | 25.0% |
| ! | TTCACCAATCAAAATTAGAA+AGG | + | chr4_1:32447896-32447915 | None:intergenic | 25.0% |
| !! | TTATCAACAACACATTTTCA+AGG | + | chr4_1:32447172-32447191 | None:intergenic | 25.0% |
| ! | ATCATATATGAGATAAACTG+TGG | + | chr4_1:32447345-32447364 | None:intergenic | 25.0% |
| !! | TGCTCAAATTTTTCATTGAT+TGG | + | chr4_1:32447371-32447390 | None:intergenic | 25.0% |
| !! | TCAACAATAACATTTTCATC+TGG | + | chr4_1:32447404-32447423 | None:intergenic | 25.0% |
| !!! | TTTTTGTTTTAAATCACCTG+CGG | + | chr4_1:32447480-32447499 | None:intergenic | 25.0% |
| ! | AAGTGACAATTATAAAGGAA+CGG | + | chr4_1:32447563-32447582 | None:intergenic | 25.0% |
| ! | TGCAAAAGTGACAATTATAA+AGG | + | chr4_1:32447568-32447587 | None:intergenic | 25.0% |
| ! | TCTCTGCAATAAATATATAG+GGG | + | chr4_1:32447664-32447683 | None:intergenic | 25.0% |
| ! | CTCTCTGCAATAAATATATA+GGG | + | chr4_1:32447665-32447684 | None:intergenic | 25.0% |
| ! | TCTCTCTGCAATAAATATAT+AGG | + | chr4_1:32447666-32447685 | None:intergenic | 25.0% |
| !!! | AGTAAAAGTATTTGTTGTCT+TGG | - | chr4_1:32447757-32447776 | Msa0544240:CDS | 25.0% |
| ! | TTCACCAATCAAAATTAGAA+AGG | + | chr4_1:32447896-32447915 | None:intergenic | 25.0% |
| GCAGATAGTGATATCAAATT+TGG | - | chr4_1:32447259-32447278 | Msa0544240:CDS | 30.0% | |
| !!! | TTTTGTTTTAAATCACCTGC+GGG | + | chr4_1:32447479-32447498 | None:intergenic | 30.0% |
| TGACAATTAAAAAGGAACAG+AGG | - | chr4_1:32447801-32447820 | Msa0544240:CDS | 30.0% | |
| GACAATTAAAAAGGAACAGA+GGG | - | chr4_1:32447802-32447821 | Msa0544240:CDS | 30.0% | |
| !!! | TGAAAATTTGTTTTGCTTGC+TGG | - | chr4_1:32447912-32447931 | Msa0544240:CDS | 30.0% |
| ! | TAAGGGATTTCTTTTTCTTG+TGG | - | chr4_1:32447937-32447956 | Msa0544240:CDS | 30.0% |
| ! | ATTTCTTTTTCTTGTGGTAG+TGG | - | chr4_1:32447943-32447962 | Msa0544240:CDS | 30.0% |
| GCAGATAGTGATATCAAATT+TGG | - | chr4_1:32447259-32447278 | Msa0544240:CDS | 30.0% | |
| !!! | TTTTGTTTTAAATCACCTGC+GGG | + | chr4_1:32447479-32447498 | None:intergenic | 30.0% |
| TGACAATTAAAAAGGAACAG+AGG | - | chr4_1:32447801-32447820 | Msa0544240:CDS | 30.0% | |
| GACAATTAAAAAGGAACAGA+GGG | - | chr4_1:32447802-32447821 | Msa0544240:CDS | 30.0% | |
| !!! | TGAAAATTTGTTTTGCTTGC+TGG | - | chr4_1:32447912-32447931 | Msa0544240:CDS | 30.0% |
| ! | TAAGGGATTTCTTTTTCTTG+TGG | - | chr4_1:32447937-32447956 | Msa0544240:CDS | 30.0% |
| ! | ATTTCTTTTTCTTGTGGTAG+TGG | - | chr4_1:32447943-32447962 | Msa0544240:CDS | 30.0% |
| CATCTGATGTTGTGTCATAT+TGG | + | chr4_1:32447148-32447167 | None:intergenic | 35.0% | |
| CAATATGACACAACATCAGA+TGG | - | chr4_1:32447146-32447165 | Msa0544240:CDS | 35.0% | |
| TCTCTTATAGAGTTGAATGG+TGG | + | chr4_1:32447207-32447226 | None:intergenic | 35.0% | |
| CTCTCTCTTATAGAGTTGAA+TGG | + | chr4_1:32447210-32447229 | None:intergenic | 35.0% | |
| CATTCAACTCTATAAGAGAG+AGG | - | chr4_1:32447208-32447227 | Msa0544240:CDS | 35.0% | |
| ! | GTGATATCAAATTTGGAACC+TGG | - | chr4_1:32447266-32447285 | Msa0544240:CDS | 35.0% |
| AAAGATGTGAAATACTTGCC+AGG | - | chr4_1:32447529-32447548 | Msa0544240:intron | 35.0% | |
| GACAATTATAAAGGAACGGA+GGG | + | chr4_1:32447559-32447578 | None:intergenic | 35.0% | |
| TGACAATTATAAAGGAACGG+AGG | + | chr4_1:32447560-32447579 | None:intergenic | 35.0% | |
| !! | GTTCAAAGCATCGTTAAATG+TGG | - | chr4_1:32447624-32447643 | Msa0544240:intron | 35.0% |
| CAATGTATCCTCAACCATAA+GGG | + | chr4_1:32448001-32448020 | None:intergenic | 35.0% | |
| CATCTGATGTTGTGTCATAT+TGG | + | chr4_1:32447148-32447167 | None:intergenic | 35.0% | |
| CAATATGACACAACATCAGA+TGG | - | chr4_1:32447146-32447165 | Msa0544240:CDS | 35.0% | |
| TCTCTTATAGAGTTGAATGG+TGG | + | chr4_1:32447207-32447226 | None:intergenic | 35.0% | |
| CTCTCTCTTATAGAGTTGAA+TGG | + | chr4_1:32447210-32447229 | None:intergenic | 35.0% | |
| CATTCAACTCTATAAGAGAG+AGG | - | chr4_1:32447208-32447227 | Msa0544240:CDS | 35.0% | |
| ! | GTGATATCAAATTTGGAACC+TGG | - | chr4_1:32447266-32447285 | Msa0544240:CDS | 35.0% |
| AAAGATGTGAAATACTTGCC+AGG | - | chr4_1:32447529-32447548 | Msa0544240:intron | 35.0% | |
| GACAATTATAAAGGAACGGA+GGG | + | chr4_1:32447559-32447578 | None:intergenic | 35.0% | |
| TGACAATTATAAAGGAACGG+AGG | + | chr4_1:32447560-32447579 | None:intergenic | 35.0% | |
| !! | GTTCAAAGCATCGTTAAATG+TGG | - | chr4_1:32447624-32447643 | Msa0544240:intron | 35.0% |
| CAATGTATCCTCAACCATAA+GGG | + | chr4_1:32448001-32448020 | None:intergenic | 35.0% | |
| GTTATCCTCCTTCGAAAATG+AGG | - | chr4_1:32447232-32447251 | Msa0544240:CDS | 40.0% | |
| GGAACAGTTTCATTGTGATG+AGG | - | chr4_1:32447318-32447337 | Msa0544240:intron | 40.0% | |
| TACTTGAAGAGAGATCCTCT+TGG | + | chr4_1:32447453-32447472 | None:intergenic | 40.0% | |
| !! | TTGTTTTGCTTGCTGGTGTA+AGG | - | chr4_1:32447919-32447938 | Msa0544240:CDS | 40.0% |
| !! | TGTTTTGCTTGCTGGTGTAA+GGG | - | chr4_1:32447920-32447939 | Msa0544240:CDS | 40.0% |
| !!! | CTTTTTCTTGTGGTAGTGGT+AGG | - | chr4_1:32447947-32447966 | Msa0544240:CDS | 40.0% |
| GGTAGGTTCCAAAACTGTTT+AGG | - | chr4_1:32447964-32447983 | Msa0544240:CDS | 40.0% | |
| ! | AGGTCTCTCCTAAACAGTTT+TGG | + | chr4_1:32447975-32447994 | None:intergenic | 40.0% |
| CCAATGTATCCTCAACCATA+AGG | + | chr4_1:32448002-32448021 | None:intergenic | 40.0% | |
| CCTTATGGTTGAGGATACAT+TGG | - | chr4_1:32447999-32448018 | Msa0544240:CDS | 40.0% | |
| TATGGTTGAGGATACATTGG+TGG | - | chr4_1:32448002-32448021 | Msa0544240:CDS | 40.0% | |
| ATGGTTGAGGATACATTGGT+GGG | - | chr4_1:32448003-32448022 | Msa0544240:CDS | 40.0% | |
| GTTATCCTCCTTCGAAAATG+AGG | - | chr4_1:32447232-32447251 | Msa0544240:CDS | 40.0% | |
| GGAACAGTTTCATTGTGATG+AGG | - | chr4_1:32447318-32447337 | Msa0544240:intron | 40.0% | |
| TACTTGAAGAGAGATCCTCT+TGG | + | chr4_1:32447453-32447472 | None:intergenic | 40.0% | |
| !! | TTGTTTTGCTTGCTGGTGTA+AGG | - | chr4_1:32447919-32447938 | Msa0544240:CDS | 40.0% |
| !! | TGTTTTGCTTGCTGGTGTAA+GGG | - | chr4_1:32447920-32447939 | Msa0544240:CDS | 40.0% |
| !!! | CTTTTTCTTGTGGTAGTGGT+AGG | - | chr4_1:32447947-32447966 | Msa0544240:CDS | 40.0% |
| GGTAGGTTCCAAAACTGTTT+AGG | - | chr4_1:32447964-32447983 | Msa0544240:CDS | 40.0% | |
| ! | AGGTCTCTCCTAAACAGTTT+TGG | + | chr4_1:32447975-32447994 | None:intergenic | 40.0% |
| CCAATGTATCCTCAACCATA+AGG | + | chr4_1:32448002-32448021 | None:intergenic | 40.0% | |
| CCTTATGGTTGAGGATACAT+TGG | - | chr4_1:32447999-32448018 | Msa0544240:CDS | 40.0% | |
| TATGGTTGAGGATACATTGG+TGG | - | chr4_1:32448002-32448021 | Msa0544240:CDS | 40.0% | |
| ATGGTTGAGGATACATTGGT+GGG | - | chr4_1:32448003-32448022 | Msa0544240:CDS | 40.0% | |
| ! | GTCGAGATTGCTGTTGTGTT+CGG | - | chr4_1:32447296-32447315 | Msa0544240:intron | 45.0% |
| ! | TCGAGATTGCTGTTGTGTTC+GGG | - | chr4_1:32447297-32447316 | Msa0544240:intron | 45.0% |
| AAAATGAATGCGCTGCCAAG+AGG | - | chr4_1:32447435-32447454 | Msa0544240:intron | 45.0% | |
| ! | TTTTGACCGGTGTGTCGTAA+TGG | - | chr4_1:32447848-32447867 | Msa0544240:CDS | 45.0% |
| TGAATGCCATTACGACACAC+CGG | + | chr4_1:32447857-32447876 | None:intergenic | 45.0% | |
| GTTGAGCGAAACAATGTGTG+CGG | + | chr4_1:32448040-32448059 | None:intergenic | 45.0% | |
| AATACAGTCCAGCTGCAGTA+GGG | + | chr4_1:32448068-32448087 | None:intergenic | 45.0% | |
| AAATACAGTCCAGCTGCAGT+AGG | + | chr4_1:32448069-32448088 | None:intergenic | 45.0% | |
| TGCAGCTGGACTGTATTTGT+GGG | - | chr4_1:32448071-32448090 | Msa0544240:CDS | 45.0% | |
| ! | GTCGAGATTGCTGTTGTGTT+CGG | - | chr4_1:32447296-32447315 | Msa0544240:intron | 45.0% |
| ! | TCGAGATTGCTGTTGTGTTC+GGG | - | chr4_1:32447297-32447316 | Msa0544240:intron | 45.0% |
| AAAATGAATGCGCTGCCAAG+AGG | - | chr4_1:32447435-32447454 | Msa0544240:intron | 45.0% | |
| ! | TTTTGACCGGTGTGTCGTAA+TGG | - | chr4_1:32447848-32447867 | Msa0544240:CDS | 45.0% |
| TGAATGCCATTACGACACAC+CGG | + | chr4_1:32447857-32447876 | None:intergenic | 45.0% | |
| GTTGAGCGAAACAATGTGTG+CGG | + | chr4_1:32448040-32448059 | None:intergenic | 45.0% | |
| AATACAGTCCAGCTGCAGTA+GGG | + | chr4_1:32448068-32448087 | None:intergenic | 45.0% | |
| AAATACAGTCCAGCTGCAGT+AGG | + | chr4_1:32448069-32448088 | None:intergenic | 45.0% | |
| TGCAGCTGGACTGTATTTGT+GGG | - | chr4_1:32448071-32448090 | Msa0544240:CDS | 45.0% | |
| ! | CCACTCCTCATTTTCGAAGG+AGG | + | chr4_1:32447240-32447259 | None:intergenic | 50.0% |
| CCTCCTTCGAAAATGAGGAG+TGG | - | chr4_1:32447237-32447256 | Msa0544240:CDS | 50.0% | |
| ! | CTGCCACTCCTCATTTTCGA+AGG | + | chr4_1:32447243-32447262 | None:intergenic | 50.0% |
| GCAATCTCGACTTTGTCACC+AGG | + | chr4_1:32447287-32447306 | None:intergenic | 50.0% | |
| TCTCTTCAAGTAGATCCCGC+AGG | - | chr4_1:32447461-32447480 | Msa0544240:intron | 50.0% | |
| ! | ATCCTCAACCATAAGGGCAC+AGG | + | chr4_1:32447995-32448014 | None:intergenic | 50.0% |
| CTGCAGCTGGACTGTATTTG+TGG | - | chr4_1:32448070-32448089 | Msa0544240:CDS | 50.0% | |
| ! | CCACTCCTCATTTTCGAAGG+AGG | + | chr4_1:32447240-32447259 | None:intergenic | 50.0% |
| CCTCCTTCGAAAATGAGGAG+TGG | - | chr4_1:32447237-32447256 | Msa0544240:CDS | 50.0% | |
| ! | CTGCCACTCCTCATTTTCGA+AGG | + | chr4_1:32447243-32447262 | None:intergenic | 50.0% |
| GCAATCTCGACTTTGTCACC+AGG | + | chr4_1:32447287-32447306 | None:intergenic | 50.0% | |
| TCTCTTCAAGTAGATCCCGC+AGG | - | chr4_1:32447461-32447480 | Msa0544240:intron | 50.0% | |
| ! | ATCCTCAACCATAAGGGCAC+AGG | + | chr4_1:32447995-32448014 | None:intergenic | 50.0% |
| CTGCAGCTGGACTGTATTTG+TGG | - | chr4_1:32448070-32448089 | Msa0544240:CDS | 50.0% | |
| !! | AAAGGAACGGAGGGAGTACC+TGG | + | chr4_1:32447550-32447569 | None:intergenic | 55.0% |
| AGGAGAGACCTGTGCCCTTA+TGG | - | chr4_1:32447984-32448003 | Msa0544240:CDS | 55.0% | |
| GACCTGTGCCCTTATGGTTG+AGG | - | chr4_1:32447990-32448009 | Msa0544240:CDS | 55.0% | |
| AACTCCTACCCTACTGCAGC+TGG | - | chr4_1:32448057-32448076 | Msa0544240:CDS | 55.0% | |
| GCTGGACTGTATTTGTGGGC+TGG | - | chr4_1:32448075-32448094 | Msa0544240:CDS | 55.0% | |
| !! | AAAGGAACGGAGGGAGTACC+TGG | + | chr4_1:32447550-32447569 | None:intergenic | 55.0% |
| AGGAGAGACCTGTGCCCTTA+TGG | - | chr4_1:32447984-32448003 | Msa0544240:CDS | 55.0% | |
| GACCTGTGCCCTTATGGTTG+AGG | - | chr4_1:32447990-32448009 | Msa0544240:CDS | 55.0% | |
| AACTCCTACCCTACTGCAGC+TGG | - | chr4_1:32448057-32448076 | Msa0544240:CDS | 55.0% | |
| GCTGGACTGTATTTGTGGGC+TGG | - | chr4_1:32448075-32448094 | Msa0544240:CDS | 55.0% | |
| CAGTCCAGCTGCAGTAGGGT+AGG | + | chr4_1:32448064-32448083 | None:intergenic | 60.0% | |
| CAGTCCAGCTGCAGTAGGGT+AGG | + | chr4_1:32448064-32448083 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 32447122 | 32448113 | 32447122 | ID=Msa0544240;Name=Msa0544240 |
| chr4_1 | mRNA | 32447122 | 32448113 | 32447122 | ID=Msa0544240-mRNA-1;Parent=Msa0544240;Name=Msa0544240-mRNA-1;_AED=0.61;_eAED=0.61;_QI=0|0|0|0.5|1|0|2|0|178 |
| chr4_1 | exon | 32447753 | 32448113 | 32447753 | ID=Msa0544240-mRNA-1:exon:8310;Parent=Msa0544240-mRNA-1 |
| chr4_1 | exon | 32447122 | 32447294 | 32447122 | ID=Msa0544240-mRNA-1:exon:8309;Parent=Msa0544240-mRNA-1 |
| chr4_1 | CDS | 32447753 | 32448113 | 32447753 | ID=Msa0544240-mRNA-1:cds;Parent=Msa0544240-mRNA-1 |
| chr4_1 | CDS | 32447122 | 32447294 | 32447122 | ID=Msa0544240-mRNA-1:cds;Parent=Msa0544240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
