Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789250 | sp|Q7XA06|SYT3_ARATH | 62.222 | 90 | 34 | 0 | 9 | 98 | 127 | 216 | 8.02e-31 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789250 | A0A1S2Z8Y7 | 80.208 | 96 | 19 | 0 | 3 | 98 | 121 | 216 | 1.36e-44 | 156 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015750 | Msa0789250 | 0.836487 | 9.094833e-57 | -8.615850e-47 |
| Msa0016570 | Msa0789250 | 0.872028 | 4.356373e-67 | -8.615850e-47 |
| Msa0016580 | Msa0789250 | 0.857719 | 1.347706e-62 | -8.615850e-47 |
| Msa0064970 | Msa0789250 | 0.841764 | 3.897663e-58 | -8.615850e-47 |
| Msa0078590 | Msa0789250 | 0.834703 | 2.571162e-56 | -8.615850e-47 |
| Msa0107580 | Msa0789250 | 0.818792 | 1.629194e-52 | -8.615850e-47 |
| Msa0110270 | Msa0789250 | 0.844101 | 9.314052e-59 | -8.615850e-47 |
| Msa0111510 | Msa0789250 | 0.815268 | 1.008299e-51 | -8.615850e-47 |
| Msa0604350 | Msa0789250 | 0.823937 | 1.058239e-53 | -8.615850e-47 |
| Msa0636170 | Msa0789250 | 0.834359 | 3.137913e-56 | -8.615850e-47 |
| Msa0657970 | Msa0789250 | 0.808731 | 2.681287e-50 | -8.615850e-47 |
| Msa0661870 | Msa0789250 | 0.800597 | 1.337746e-48 | -8.615850e-47 |
| Msa0673450 | Msa0789250 | 0.833263 | 5.896341e-56 | -8.615850e-47 |
| Msa0673460 | Msa0789250 | 0.810321 | 1.221407e-50 | -8.615850e-47 |
| Msa0678930 | Msa0789250 | 0.830710 | 2.519452e-55 | -8.615850e-47 |
| Msa0688270 | Msa0789250 | 0.822721 | 2.035306e-53 | -8.615850e-47 |
| Msa0694370 | Msa0789250 | 0.807615 | 4.636430e-50 | -8.615850e-47 |
| Msa0697060 | Msa0789250 | 0.814797 | 1.282740e-51 | -8.615850e-47 |
| Msa0726140 | Msa0789250 | 0.828824 | 7.251898e-55 | -8.615850e-47 |
| Msa0729800 | Msa0789250 | 0.819248 | 1.283067e-52 | -8.615850e-47 |
| Msa0731550 | Msa0789250 | 0.818472 | 1.926110e-52 | -8.615850e-47 |
| Msa0731940 | Msa0789250 | 0.805271 | 1.446931e-49 | -8.615850e-47 |
| Msa0736000 | Msa0789250 | 0.806295 | 8.814921e-50 | -8.615850e-47 |
| Msa0741990 | Msa0789250 | 0.815963 | 7.059909e-52 | -8.615850e-47 |
| Msa0743810 | Msa0789250 | 0.833278 | 5.846145e-56 | -8.615850e-47 |
| Msa0745060 | Msa0789250 | 0.830280 | 3.209078e-55 | -8.615850e-47 |
| Msa0759410 | Msa0789250 | 0.813505 | 2.474178e-51 | -8.615850e-47 |
| Msa0762360 | Msa0789250 | 0.800790 | 1.221529e-48 | -8.615850e-47 |
| Msa0764960 | Msa0789250 | 0.948168 | 1.609504e-106 | -8.615850e-47 |
| Msa0766630 | Msa0789250 | 0.823513 | 1.329963e-53 | -8.615850e-47 |
| Msa0767720 | Msa0789250 | 0.855368 | 6.611842e-62 | -8.615850e-47 |
| Msa0777790 | Msa0789250 | 0.817669 | 2.925668e-52 | -8.615850e-47 |
| Msa0777850 | Msa0789250 | 0.813399 | 2.610967e-51 | -8.615850e-47 |
| Msa0789250 | Msa0806090 | 0.803345 | 3.643941e-49 | -8.615850e-47 |
| Msa0789250 | Msa0810220 | 0.802186 | 6.322830e-49 | -8.615850e-47 |
| Msa0789250 | Msa0811080 | 0.845333 | 4.334551e-59 | -8.615850e-47 |
| Msa0789250 | Msa0813400 | 0.800393 | 1.472128e-48 | -8.615850e-47 |
| Msa0789250 | Msa0815140 | 0.801624 | 8.247353e-49 | -8.615850e-47 |
| Msa0789250 | Msa0825860 | 0.821316 | 4.308918e-53 | -8.615850e-47 |
| Msa0789250 | Msa0826750 | 0.804232 | 2.384413e-49 | -8.615850e-47 |
| Msa0789250 | Msa0843260 | 0.803995 | 2.670815e-49 | -8.615850e-47 |
| Msa0789250 | Msa0846330 | 0.809830 | 1.558691e-50 | -8.615850e-47 |
| Msa0789250 | Msa0846350 | 0.821598 | 3.707754e-53 | -8.615850e-47 |
| Msa0789250 | Msa0848060 | 0.800626 | 1.319784e-48 | -8.615850e-47 |
| Msa0789250 | Msa0865320 | 0.804230 | 2.387082e-49 | -8.615850e-47 |
| Msa0789250 | Msa0885280 | 0.854262 | 1.383538e-61 | -8.615850e-47 |
| Msa0789250 | Msa0885290 | 0.830380 | 3.034843e-55 | -8.615850e-47 |
| Msa0789250 | Msa0886750 | 0.809242 | 2.084783e-50 | -8.615850e-47 |
| Msa0789250 | Msa0897880 | 0.802765 | 4.802809e-49 | -8.615850e-47 |
| Msa0789250 | Msa0907070 | 0.815024 | 1.142591e-51 | -8.615850e-47 |
| Msa0789250 | Msa0907260 | 0.806413 | 8.327257e-50 | -8.615850e-47 |
| Msa0789250 | Msa0927290 | 0.801402 | 9.156317e-49 | -8.615850e-47 |
| Msa0789250 | Msa0935910 | 0.803639 | 3.167482e-49 | -8.615850e-47 |
| Msa0789250 | Msa0954910 | 0.818217 | 2.199167e-52 | -8.615850e-47 |
| Msa0789250 | Msa0956270 | 0.810014 | 1.423017e-50 | -8.615850e-47 |
| Msa0789250 | Msa0959770 | 0.806632 | 7.484408e-50 | -8.615850e-47 |
| Msa0789250 | Msa0969260 | 0.811769 | 5.930837e-51 | -8.615850e-47 |
| Msa0789250 | Msa0969520 | 0.802047 | 6.753014e-49 | -8.615850e-47 |
| Msa0789250 | Msa0976670 | 0.800178 | 1.627993e-48 | -8.615850e-47 |
| Msa0789250 | Msa0981370 | 0.802203 | 6.272504e-49 | -8.615850e-47 |
| Msa0789250 | Msa1014540 | 0.810206 | 1.293617e-50 | -8.615850e-47 |
| Msa0789250 | Msa1015730 | 0.806519 | 7.909776e-50 | -8.615850e-47 |
| Msa0789250 | Msa1015790 | 0.801949 | 7.073923e-49 | -8.615850e-47 |
| Msa0789250 | Msa1015800 | 0.817365 | 3.425422e-52 | -8.615850e-47 |
| Msa0789250 | Msa1015810 | 0.813760 | 2.174274e-51 | -8.615850e-47 |
| Msa0789250 | Msa1016280 | 0.811419 | 7.069078e-51 | -8.615850e-47 |
| Msa0789250 | Msa1024240 | 0.839563 | 1.470433e-57 | -8.615850e-47 |
| Msa0789250 | Msa1024370 | 0.803823 | 2.900683e-49 | -8.615850e-47 |
| Msa0789250 | Msa1025360 | 0.828081 | 1.096140e-54 | -8.615850e-47 |
| Msa0789250 | Msa1025370 | 0.819574 | 1.081079e-52 | -8.615850e-47 |
| Msa0789250 | Msa1044830 | 0.823195 | 1.578342e-53 | -8.615850e-47 |
| Msa0789250 | Msa1044840 | 0.826240 | 3.024511e-54 | -8.615850e-47 |
| Msa0789250 | Msa1059570 | 0.829442 | 5.135876e-55 | -8.615850e-47 |
| Msa0789250 | Msa1059750 | 0.801376 | 9.269405e-49 | -8.615850e-47 |
| Msa0789250 | Msa1071100 | 0.800751 | 1.244182e-48 | -8.615850e-47 |
| Msa0789250 | Msa1071110 | 0.814523 | 1.475327e-51 | -8.615850e-47 |
| Msa0789250 | Msa1075220 | -0.809364 | 1.962535e-50 | -8.615850e-47 |
| Msa0789250 | Msa1079180 | 0.803481 | 3.415624e-49 | -8.615850e-47 |
| Msa0789250 | Msa1082500 | 0.807084 | 6.006990e-50 | -8.615850e-47 |
| Msa0789250 | Msa1092990 | 0.851755 | 7.217170e-61 | -8.615850e-47 |
| Msa0789250 | Msa1100980 | 0.812993 | 3.204741e-51 | -8.615850e-47 |
| Msa0789250 | Msa1104630 | 0.809489 | 1.845255e-50 | -8.615850e-47 |
| Msa0789250 | Msa1109440 | 0.821115 | 4.792943e-53 | -8.615850e-47 |
| Msa0789250 | Msa1135740 | 0.801258 | 9.799979e-49 | -8.615850e-47 |
| Msa0789250 | Msa1136090 | 0.820621 | 6.226391e-53 | -8.615850e-47 |
| Msa0789250 | Msa1146110 | 0.853781 | 1.904514e-61 | -8.615850e-47 |
| Msa0789250 | Msa1148020 | 0.866857 | 2.097112e-65 | -8.615850e-47 |
| Msa0789250 | Msa1160670 | 0.859138 | 5.088252e-63 | -8.615850e-47 |
| Msa0789250 | Msa1160690 | 0.801851 | 7.407240e-49 | -8.615850e-47 |
| Msa0789250 | Msa1162550 | -0.812257 | 4.644512e-51 | -8.615850e-47 |
| Msa0789250 | Msa1187940 | 0.853438 | 2.390278e-61 | -8.615850e-47 |
| Msa0789250 | Msa1187950 | 0.849533 | 3.043178e-60 | -8.615850e-47 |
| Msa0789250 | Msa1192640 | 0.815734 | 7.942805e-52 | -8.615850e-47 |
| Msa0789250 | Msa1233890 | 0.802990 | 4.316215e-49 | -8.615850e-47 |
| Msa0789250 | Msa1253000 | 0.817826 | 2.696299e-52 | -8.615850e-47 |
| Msa0789250 | Msa1269670 | 0.827738 | 1.325182e-54 | -8.615850e-47 |
| Msa0789250 | Msa1270230 | 0.848961 | 4.389752e-60 | -8.615850e-47 |
| Msa0789250 | Msa1270240 | 0.825136 | 5.525302e-54 | -8.615850e-47 |
| Msa0789250 | Msa1277660 | 0.815584 | 8.577253e-52 | -8.615850e-47 |
| Msa0789250 | Msa1283330 | 0.838427 | 2.893972e-57 | -8.615850e-47 |
| Msa0789250 | Msa1284680 | 0.840033 | 1.109540e-57 | -8.615850e-47 |
| Msa0789250 | Msa1285930 | 0.833169 | 6.223390e-56 | -8.615850e-47 |
| Msa0789250 | Msa1287800 | 0.811679 | 6.206338e-51 | -8.615850e-47 |
| Msa0789250 | Msa1287810 | 0.823510 | 1.332089e-53 | -8.615850e-47 |
| Msa0789250 | Msa1289430 | 0.801399 | 9.171263e-49 | -8.615850e-47 |
| Msa0789250 | Msa1307890 | 0.804972 | 1.670787e-49 | -8.615850e-47 |
| Msa0789250 | Msa1340590 | 0.810167 | 1.318775e-50 | -8.615850e-47 |
| Msa0789250 | Msa1359040 | 0.822350 | 2.483268e-53 | -8.615850e-47 |
| Msa0789250 | Msa1373030 | 0.802941 | 4.417739e-49 | -8.615850e-47 |
| Msa0789250 | Msa1397580 | 0.806587 | 7.652390e-50 | -8.615850e-47 |
| Msa0789250 | Msa1397610 | 0.800009 | 1.761847e-48 | -8.615850e-47 |
| Msa0789250 | Msa1397860 | 0.814658 | 1.377111e-51 | -8.615850e-47 |
| Msa0789250 | Msa1402790 | 0.800045 | 1.732671e-48 | -8.615850e-47 |
| Msa0789250 | Msa1404000 | 0.819114 | 1.376679e-52 | -8.615850e-47 |
| Msa0789250 | Msa1411020 | 0.803684 | 3.100081e-49 | -8.615850e-47 |
| Msa0789250 | Msa1422180 | 0.825450 | 4.656403e-54 | -8.615850e-47 |
| Msa0789250 | Msa1424290 | 0.804794 | 1.820619e-49 | -8.615850e-47 |
| Msa0789250 | Msa1433120 | 0.809651 | 1.702851e-50 | -8.615850e-47 |
| Msa0789250 | Msa1434350 | 0.805925 | 1.055121e-49 | -8.615850e-47 |
| Msa0789250 | Msa1438250 | 0.810345 | 1.206881e-50 | -8.615850e-47 |
| Msa0789250 | Msa1439320 | 0.802885 | 4.535757e-49 | -8.615850e-47 |
| Msa0789250 | Msa1451570 | 0.803473 | 3.428078e-49 | -8.615850e-47 |
| Msa0789250 | Msa1466540 | 0.805615 | 1.225379e-49 | -8.615850e-47 |
| Msa0142220 | Msa0789250 | 0.847679 | 9.928234e-60 | -8.615850e-47 |
| Msa0153910 | Msa0789250 | 0.827165 | 1.818674e-54 | -8.615850e-47 |
| Msa0188460 | Msa0789250 | 0.804500 | 2.096914e-49 | -8.615850e-47 |
| Msa0214300 | Msa0789250 | 0.806340 | 8.626383e-50 | -8.615850e-47 |
| Msa0232850 | Msa0789250 | 0.819577 | 1.079517e-52 | -8.615850e-47 |
| Msa0233300 | Msa0789250 | 0.813791 | 2.140844e-51 | -8.615850e-47 |
| Msa0384800 | Msa0789250 | 0.831297 | 1.808556e-55 | -8.615850e-47 |
| Msa0394970 | Msa0789250 | 0.802925 | 4.450620e-49 | -8.615850e-47 |
| Msa0397750 | Msa0789250 | 0.802134 | 6.478638e-49 | -8.615850e-47 |
| Msa0402290 | Msa0789250 | 0.822258 | 2.607970e-53 | -8.615850e-47 |
| Msa0407750 | Msa0789250 | 0.804199 | 2.422480e-49 | -8.615850e-47 |
| Msa0414420 | Msa0789250 | 0.814661 | 1.375164e-51 | -8.615850e-47 |
| Msa0417100 | Msa0789250 | 0.818304 | 2.102071e-52 | -8.615850e-47 |
| Msa0431690 | Msa0789250 | 0.805078 | 1.588150e-49 | -8.615850e-47 |
| Msa0432290 | Msa0789250 | 0.815116 | 1.090026e-51 | -8.615850e-47 |
| Msa0436780 | Msa0789250 | 0.803439 | 3.483838e-49 | -8.615850e-47 |
| Msa0436800 | Msa0789250 | 0.800843 | 1.191376e-48 | -8.615850e-47 |
| Msa0437990 | Msa0789250 | 0.806442 | 8.211004e-50 | -8.615850e-47 |
| Msa0438620 | Msa0789250 | 0.820434 | 6.873428e-53 | -8.615850e-47 |
| Msa0444130 | Msa0789250 | 0.814820 | 1.267948e-51 | -8.615850e-47 |
| Msa0452900 | Msa0789250 | 0.821102 | 4.826265e-53 | -8.615850e-47 |
| Msa0453120 | Msa0789250 | 0.827698 | 1.354692e-54 | -8.615850e-47 |
| Msa0456200 | Msa0789250 | 0.804738 | 1.870593e-49 | -8.615850e-47 |
| Msa0456840 | Msa0789250 | 0.803654 | 3.144903e-49 | -8.615850e-47 |
| Msa0256440 | Msa0789250 | 0.809751 | 1.620869e-50 | -8.615850e-47 |
| Msa0266720 | Msa0789250 | 0.839380 | 1.640672e-57 | -8.615850e-47 |
| Msa0267000 | Msa0789250 | 0.817357 | 3.438732e-52 | -8.615850e-47 |
| Msa0267010 | Msa0789250 | 0.819107 | 1.381640e-52 | -8.615850e-47 |
| Msa0270520 | Msa0789250 | 0.840780 | 7.076849e-58 | -8.615850e-47 |
| Msa0273100 | Msa0789250 | 0.824943 | 6.135556e-54 | -8.615850e-47 |
| Msa0288100 | Msa0789250 | 0.806646 | 7.433455e-50 | -8.615850e-47 |
| Msa0295770 | Msa0789250 | 0.812825 | 3.488058e-51 | -8.615850e-47 |
| Msa0304170 | Msa0789250 | 0.825524 | 4.472635e-54 | -8.615850e-47 |
| Msa0305190 | Msa0789250 | 0.816974 | 4.193355e-52 | -8.615850e-47 |
| Msa0306460 | Msa0789250 | 0.853448 | 2.373081e-61 | -8.615850e-47 |
| Msa0309020 | Msa0789250 | 0.816948 | 4.249189e-52 | -8.615850e-47 |
| Msa0313760 | Msa0789250 | 0.804109 | 2.529338e-49 | -8.615850e-47 |
| Msa0326200 | Msa0789250 | 0.807603 | 4.663148e-50 | -8.615850e-47 |
| Msa0337900 | Msa0789250 | 0.800897 | 1.161815e-48 | -8.615850e-47 |
| Msa0342240 | Msa0789250 | 0.808636 | 2.809278e-50 | -8.615850e-47 |
| Msa0355220 | Msa0789250 | 0.820457 | 6.791287e-53 | -8.615850e-47 |
| Msa0485370 | Msa0789250 | 0.806310 | 8.754916e-50 | -8.615850e-47 |
| Msa0491590 | Msa0789250 | 0.803240 | 3.831395e-49 | -8.615850e-47 |
| Msa0502760 | Msa0789250 | 0.819614 | 1.058901e-52 | -8.615850e-47 |
| Msa0506270 | Msa0789250 | 0.813295 | 2.751560e-51 | -8.615850e-47 |
| Msa0541130 | Msa0789250 | 0.831303 | 1.801701e-55 | -8.615850e-47 |
| Msa0544240 | Msa0789250 | 0.800804 | 1.213922e-48 | -8.615850e-47 |
| Msa0545200 | Msa0789250 | 0.820474 | 6.728909e-53 | -8.615850e-47 |
| Msa0598780 | Msa0789250 | 0.807946 | 3.941895e-50 | -8.615850e-47 |
| Msa0600700 | Msa0789250 | 0.803867 | 2.839713e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789250 | MtrunA17_Chr1g0199571 | 90.000 | 90 | 9 | 0 | 9 | 98 | 127 | 216 | 8.14e-48 | 162 |
| Msa0789250 | MtrunA17_Chr1g0156811 | 54.737 | 95 | 43 | 0 | 3 | 97 | 121 | 215 | 1.22e-29 | 113 |
| Msa0789250 | MtrunA17_Chr4g0037111 | 56.180 | 89 | 39 | 0 | 10 | 98 | 128 | 216 | 2.67e-29 | 109 |
| Msa0789250 | MtrunA17_Chr4g0049851 | 90.698 | 43 | 4 | 0 | 100 | 142 | 81 | 123 | 2.28e-20 | 86.7 |
| Msa0789250 | MtrunA17_Chr4g0049861 | 76.744 | 43 | 10 | 0 | 100 | 142 | 79 | 121 | 1.53e-16 | 75.9 |
| Msa0789250 | MtrunA17_Chr7g0246311 | 33.673 | 98 | 62 | 2 | 3 | 98 | 119 | 215 | 2.20e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0789250 | AT5G04220.3 | 62.222 | 90 | 34 | 0 | 9 | 98 | 65 | 154 | 5.58e-32 | 119 |
| Msa0789250 | AT5G04220.2 | 62.222 | 90 | 34 | 0 | 9 | 98 | 127 | 216 | 8.16e-32 | 119 |
| Msa0789250 | AT2G20990.1 | 54.167 | 96 | 44 | 0 | 3 | 98 | 121 | 216 | 2.68e-29 | 112 |
| Msa0789250 | AT2G20990.3 | 54.167 | 96 | 44 | 0 | 3 | 98 | 121 | 216 | 2.94e-29 | 112 |
| Msa0789250 | AT2G20990.2 | 54.167 | 96 | 44 | 0 | 3 | 98 | 121 | 216 | 3.28e-29 | 112 |
| Msa0789250 | AT1G20080.2 | 50.000 | 96 | 48 | 0 | 3 | 98 | 121 | 216 | 5.49e-28 | 108 |
| Msa0789250 | AT1G20080.3 | 50.000 | 96 | 48 | 0 | 3 | 98 | 121 | 216 | 5.49e-28 | 108 |
| Msa0789250 | AT1G20080.4 | 50.000 | 96 | 48 | 0 | 3 | 98 | 121 | 216 | 5.49e-28 | 108 |
| Msa0789250 | AT1G20080.1 | 50.000 | 96 | 48 | 0 | 3 | 98 | 121 | 216 | 5.49e-28 | 108 |
| Msa0789250 | AT1G20080.5 | 50.000 | 96 | 48 | 0 | 3 | 98 | 121 | 216 | 5.49e-28 | 108 |
| Msa0789250 | AT1G05500.1 | 32.653 | 98 | 65 | 1 | 3 | 99 | 120 | 217 | 2.41e-13 | 67.0 |
| Msa0789250 | AT5G64370.1 | 58.182 | 55 | 17 | 1 | 88 | 142 | 69 | 117 | 1.87e-12 | 64.3 |
| Msa0789250 | AT3G61050.2 | 35.106 | 94 | 58 | 2 | 8 | 99 | 124 | 216 | 6.29e-12 | 63.2 |
| Msa0789250 | AT3G61050.1 | 35.106 | 94 | 58 | 2 | 8 | 99 | 124 | 216 | 6.29e-12 | 63.2 |
| Msa0789250 | AT1G05500.2 | 39.726 | 73 | 43 | 1 | 28 | 99 | 1 | 73 | 2.51e-11 | 61.2 |
Find 46 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTGTTGAGATTCCTATTA+AGG | 0.189939 | 5_2:+77063229 | Msa0789250:five_prime_UTR |
| ATGCTGATAAAGAAGTATTA+AGG | 0.197682 | 5_2:+77064354 | Msa0789250:CDS |
| AACAATGCCAGTTTAACTTT+TGG | 0.280661 | 5_2:-77063267 | None:intergenic |
| TTCTGCAGGTATGAAAGTTT+TGG | 0.282874 | 5_2:+77063525 | Msa0789250:intron |
| TTTGGAGCAACACCCTTAAT+AGG | 0.284160 | 5_2:-77063242 | None:intergenic |
| TGCAAGGTCAATACTATGTT+TGG | 0.291324 | 5_2:-77063601 | None:intergenic |
| ATATGAAGGGTCTAGCATTA+TGG | 0.303406 | 5_2:+77064507 | Msa0789250:CDS |
| GCTAAGATCAGCAAAATTTC+AGG | 0.326164 | 5_2:+77063320 | Msa0789250:CDS |
| GGAAACAAATGAAAAGGAAT+TGG | 0.343840 | 5_2:+77063546 | Msa0789250:CDS |
| CCAAAATCCAAAAGTTAAAC+TGG | 0.349476 | 5_2:+77063260 | Msa0789250:five_prime_UTR |
| GCAGATAAGTTTAAGACCTT+TGG | 0.357838 | 5_2:+77063765 | Msa0789250:CDS |
| TATGAAGGGTCTAGCATTAT+GGG | 0.373158 | 5_2:+77064508 | Msa0789250:CDS |
| TCGATAAAGTGCGCAATTGT+TGG | 0.373558 | 5_2:-77064425 | None:intergenic |
| AAAAGTTAAACTGGCATTGT+TGG | 0.398909 | 5_2:+77063269 | Msa0789250:five_prime_UTR |
| TCATGAAACATGTCATCAAA+TGG | 0.405572 | 5_2:+77063569 | Msa0789250:CDS |
| AGTGTTGAGATTCCTATTAA+GGG | 0.409795 | 5_2:+77063230 | Msa0789250:five_prime_UTR |
| AAAGATTGTGGTGTCTTTGA+TGG | 0.416050 | 5_2:+77063810 | Msa0789250:CDS |
| TGCTGATAAAGAAGTATTAA+GGG | 0.432567 | 5_2:+77064355 | Msa0789250:CDS |
| GCAAGGTCAATACTATGTTT+GGG | 0.443699 | 5_2:-77063600 | None:intergenic |
| CGATAAAGTGCGCAATTGTT+GGG | 0.445360 | 5_2:-77064424 | None:intergenic |
| TAATGCTAGACCCTTCATAT+AGG | 0.482208 | 5_2:-77064504 | None:intergenic |
| GCTAGACCCTTCATATAGGT+TGG | 0.510341 | 5_2:-77064500 | None:intergenic |
| TTTGAGTTGGCGATATCTGG+GGG | 0.510422 | 5_2:+77063961 | Msa0789250:CDS |
| ATGTCTTCCAACCTATATGA+AGG | 0.513407 | 5_2:+77064493 | Msa0789250:CDS |
| GTCTATTAAGATCAAAGTGC+AGG | 0.521581 | 5_2:+77063630 | Msa0789250:CDS |
| ACCACAATCTTTGCAAAACA+TGG | 0.526489 | 5_2:-77063799 | None:intergenic |
| AAACATGTCATCAAATGGGC+TGG | 0.527251 | 5_2:+77063574 | Msa0789250:CDS |
| AAGGGAACCTCGAGTTGTGA+GGG | 0.552694 | 5_2:+77064373 | Msa0789250:CDS |
| GAACCTCGAGTTGTGAGGGT+TGG | 0.560787 | 5_2:+77064377 | Msa0789250:CDS |
| TGTGGTGTCTTTGATGGAGA+AGG | 0.563558 | 5_2:+77063816 | Msa0789250:CDS |
| GTCTAGCATTATGGGAGGTG+AGG | 0.568423 | 5_2:+77064516 | Msa0789250:CDS |
| CATGAAACATGTCATCAAAT+GGG | 0.570812 | 5_2:+77063570 | Msa0789250:CDS |
| GTTCAATTTACAGCCTCATG+TGG | 0.577586 | 5_2:+77063936 | Msa0789250:intron |
| TAAGGGAACCTCGAGTTGTG+AGG | 0.598332 | 5_2:+77064372 | Msa0789250:CDS |
| AAAGTGCGCAATTGTTGGGA+GGG | 0.605427 | 5_2:-77064420 | None:intergenic |
| TGTCTTCCAACCTATATGAA+GGG | 0.611255 | 5_2:+77064494 | Msa0789250:CDS |
| TTGAGTTGGCGATATCTGGG+GGG | 0.612000 | 5_2:+77063962 | Msa0789250:CDS |
| AAACCAACCCTCACAACTCG+AGG | 0.620062 | 5_2:-77064380 | None:intergenic |
| TAAAGTGCGCAATTGTTGGG+AGG | 0.630263 | 5_2:-77064421 | None:intergenic |
| TGAGTTGGCGATATCTGGGG+GGG | 0.636683 | 5_2:+77063963 | Msa0789250:CDS |
| CTTAATAGACAACACATGCA+AGG | 0.647483 | 5_2:-77063617 | None:intergenic |
| AAAGGTCTTAAACTTATCTG+CGG | 0.650638 | 5_2:-77063763 | None:intergenic |
| GCCAACTCAAAATCCACATG+AGG | 0.675578 | 5_2:-77063949 | None:intergenic |
| CATGGAAGTGTAGACACCAA+AGG | 0.678495 | 5_2:-77063781 | None:intergenic |
| GTGAACACAAGTGAAATGCA+AGG | 0.692141 | 5_2:+77063296 | Msa0789250:exon |
| GAAGGGTCTAGCATTATGGG+AGG | 0.702967 | 5_2:+77064511 | Msa0789250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTTATCAAATAAGAA+GGG | - | chr5_2:77063914-77063933 | None:intergenic | 10.0% |
| !! | TAATTATTTATCAAATAAGA+AGG | - | chr5_2:77063915-77063934 | None:intergenic | 10.0% |
| !! | AATTATTTATCAAATAAGAA+GGG | - | chr5_2:77063914-77063933 | None:intergenic | 10.0% |
| !! | TAATTATTTATCAAATAAGA+AGG | - | chr5_2:77063915-77063934 | None:intergenic | 10.0% |
| !!! | TGATTTTTATTTTTCTCAGT+TGG | + | chr5_2:77063717-77063736 | Msa0789250:intron | 20.0% |
| !! | CTATAATATAATCATAATCG+CGG | - | chr5_2:77064004-77064023 | None:intergenic | 20.0% |
| !!! | TGATTTTTATTTTTCTCAGT+TGG | + | chr5_2:77063717-77063736 | Msa0789250:intron | 20.0% |
| !! | CTATAATATAATCATAATCG+CGG | - | chr5_2:77064004-77064023 | None:intergenic | 20.0% |
| ! | TGTAAAGCTTTCAAAATACA+AGG | + | chr5_2:77063361-77063380 | Msa0789250:intron | 25.0% |
| ! | TAATCCTCTCTTTCATTTAT+AGG | + | chr5_2:77063464-77063483 | Msa0789250:intron | 25.0% |
| ! | AATCCTCTCTTTCATTTATA+GGG | + | chr5_2:77063465-77063484 | Msa0789250:intron | 25.0% |
| !!! | AGTTTTGGAAACAAATGAAA+AGG | + | chr5_2:77063540-77063559 | Msa0789250:CDS | 25.0% |
| !! | TATTTTCTAATTTTCGGTGA+GGG | - | chr5_2:77063669-77063688 | None:intergenic | 25.0% |
| !! | TTATTTTCTAATTTTCGGTG+AGG | - | chr5_2:77063670-77063689 | None:intergenic | 25.0% |
| ! | TTTCTTCTAATTTCACTTCT+TGG | + | chr5_2:77063855-77063874 | Msa0789250:intron | 25.0% |
| ! | TTCTTCTAATTTCACTTCTT+GGG | + | chr5_2:77063856-77063875 | Msa0789250:intron | 25.0% |
| ! | TTCATCTTGTGATATCATTA+GGG | - | chr5_2:77064145-77064164 | None:intergenic | 25.0% |
| ! | TTTCATCTTGTGATATCATT+AGG | - | chr5_2:77064146-77064165 | None:intergenic | 25.0% |
| ! | TAATGATATCACAAGATGAA+AGG | + | chr5_2:77064145-77064164 | Msa0789250:intron | 25.0% |
| !! | GTTATTTAAGCTATAGCTTT+TGG | + | chr5_2:77064285-77064304 | Msa0789250:intron | 25.0% |
| !!! | ATGCTGATAAAGAAGTATTA+AGG | + | chr5_2:77064354-77064373 | Msa0789250:CDS | 25.0% |
| !!! | TGCTGATAAAGAAGTATTAA+GGG | + | chr5_2:77064355-77064374 | Msa0789250:CDS | 25.0% |
| ! | TGTAAAGCTTTCAAAATACA+AGG | + | chr5_2:77063361-77063380 | Msa0789250:intron | 25.0% |
| ! | TAATCCTCTCTTTCATTTAT+AGG | + | chr5_2:77063464-77063483 | Msa0789250:intron | 25.0% |
| ! | AATCCTCTCTTTCATTTATA+GGG | + | chr5_2:77063465-77063484 | Msa0789250:intron | 25.0% |
| !!! | AGTTTTGGAAACAAATGAAA+AGG | + | chr5_2:77063540-77063559 | Msa0789250:CDS | 25.0% |
| !! | TATTTTCTAATTTTCGGTGA+GGG | - | chr5_2:77063669-77063688 | None:intergenic | 25.0% |
| !! | TTATTTTCTAATTTTCGGTG+AGG | - | chr5_2:77063670-77063689 | None:intergenic | 25.0% |
| ! | TTTCTTCTAATTTCACTTCT+TGG | + | chr5_2:77063855-77063874 | Msa0789250:intron | 25.0% |
| ! | TTCTTCTAATTTCACTTCTT+GGG | + | chr5_2:77063856-77063875 | Msa0789250:intron | 25.0% |
| ! | TTCATCTTGTGATATCATTA+GGG | - | chr5_2:77064145-77064164 | None:intergenic | 25.0% |
| ! | TTTCATCTTGTGATATCATT+AGG | - | chr5_2:77064146-77064165 | None:intergenic | 25.0% |
| ! | TAATGATATCACAAGATGAA+AGG | + | chr5_2:77064145-77064164 | Msa0789250:intron | 25.0% |
| !! | GTTATTTAAGCTATAGCTTT+TGG | + | chr5_2:77064285-77064304 | Msa0789250:intron | 25.0% |
| !!! | ATGCTGATAAAGAAGTATTA+AGG | + | chr5_2:77064354-77064373 | Msa0789250:CDS | 25.0% |
| !!! | TGCTGATAAAGAAGTATTAA+GGG | + | chr5_2:77064355-77064374 | Msa0789250:CDS | 25.0% |
| ! | TAGTGTTGAGATTCCTATTA+AGG | + | chr5_2:77063229-77063248 | Msa0789250:five_prime_UTR | 30.0% |
| ! | AGTGTTGAGATTCCTATTAA+GGG | + | chr5_2:77063230-77063249 | Msa0789250:five_prime_UTR | 30.0% |
| !! | CCAGTTTAACTTTTGGATTT+TGG | - | chr5_2:77063263-77063282 | None:intergenic | 30.0% |
| CCAAAATCCAAAAGTTAAAC+TGG | + | chr5_2:77063260-77063279 | Msa0789250:five_prime_UTR | 30.0% | |
| !! | AACAATGCCAGTTTAACTTT+TGG | - | chr5_2:77063270-77063289 | None:intergenic | 30.0% |
| AAAAGTTAAACTGGCATTGT+TGG | + | chr5_2:77063269-77063288 | Msa0789250:five_prime_UTR | 30.0% | |
| ACAAAGCAACAAAATCAAAG+AGG | - | chr5_2:77063387-77063406 | None:intergenic | 30.0% | |
| ! | CTTTGTTTCTTTGATGTGTT+TGG | + | chr5_2:77063401-77063420 | Msa0789250:intron | 30.0% |
| ATCCTCTCTTTCATTTATAG+GGG | + | chr5_2:77063466-77063485 | Msa0789250:intron | 30.0% | |
| ATTGTTTGTAGTAATTCTGC+AGG | + | chr5_2:77063511-77063530 | Msa0789250:intron | 30.0% | |
| GGAAACAAATGAAAAGGAAT+TGG | + | chr5_2:77063546-77063565 | Msa0789250:CDS | 30.0% | |
| TCATGAAACATGTCATCAAA+TGG | + | chr5_2:77063569-77063588 | Msa0789250:CDS | 30.0% | |
| CATGAAACATGTCATCAAAT+GGG | + | chr5_2:77063570-77063589 | Msa0789250:CDS | 30.0% | |
| AAAGGTCTTAAACTTATCTG+CGG | - | chr5_2:77063766-77063785 | None:intergenic | 30.0% | |
| TGAATTGTATTCATACCTTG+AGG | - | chr5_2:77064116-77064135 | None:intergenic | 30.0% | |
| ! | TAGTGTTGAGATTCCTATTA+AGG | + | chr5_2:77063229-77063248 | Msa0789250:five_prime_UTR | 30.0% |
| ! | AGTGTTGAGATTCCTATTAA+GGG | + | chr5_2:77063230-77063249 | Msa0789250:five_prime_UTR | 30.0% |
| !! | CCAGTTTAACTTTTGGATTT+TGG | - | chr5_2:77063263-77063282 | None:intergenic | 30.0% |
| CCAAAATCCAAAAGTTAAAC+TGG | + | chr5_2:77063260-77063279 | Msa0789250:five_prime_UTR | 30.0% | |
| !! | AACAATGCCAGTTTAACTTT+TGG | - | chr5_2:77063270-77063289 | None:intergenic | 30.0% |
| AAAAGTTAAACTGGCATTGT+TGG | + | chr5_2:77063269-77063288 | Msa0789250:five_prime_UTR | 30.0% | |
| ACAAAGCAACAAAATCAAAG+AGG | - | chr5_2:77063387-77063406 | None:intergenic | 30.0% | |
| ! | CTTTGTTTCTTTGATGTGTT+TGG | + | chr5_2:77063401-77063420 | Msa0789250:intron | 30.0% |
| ATCCTCTCTTTCATTTATAG+GGG | + | chr5_2:77063466-77063485 | Msa0789250:intron | 30.0% | |
| ATTGTTTGTAGTAATTCTGC+AGG | + | chr5_2:77063511-77063530 | Msa0789250:intron | 30.0% | |
| GGAAACAAATGAAAAGGAAT+TGG | + | chr5_2:77063546-77063565 | Msa0789250:CDS | 30.0% | |
| TCATGAAACATGTCATCAAA+TGG | + | chr5_2:77063569-77063588 | Msa0789250:CDS | 30.0% | |
| CATGAAACATGTCATCAAAT+GGG | + | chr5_2:77063570-77063589 | Msa0789250:CDS | 30.0% | |
| AAAGGTCTTAAACTTATCTG+CGG | - | chr5_2:77063766-77063785 | None:intergenic | 30.0% | |
| TGAATTGTATTCATACCTTG+AGG | - | chr5_2:77064116-77064135 | None:intergenic | 30.0% | |
| GCTAAGATCAGCAAAATTTC+AGG | + | chr5_2:77063320-77063339 | Msa0789250:CDS | 35.0% | |
| TACCCCTATAAATGAAAGAG+AGG | - | chr5_2:77063471-77063490 | None:intergenic | 35.0% | |
| ! | TTCTGCAGGTATGAAAGTTT+TGG | + | chr5_2:77063525-77063544 | Msa0789250:intron | 35.0% |
| GCAAGGTCAATACTATGTTT+GGG | - | chr5_2:77063603-77063622 | None:intergenic | 35.0% | |
| TGCAAGGTCAATACTATGTT+TGG | - | chr5_2:77063604-77063623 | None:intergenic | 35.0% | |
| CTTAATAGACAACACATGCA+AGG | - | chr5_2:77063620-77063639 | None:intergenic | 35.0% | |
| GTCTATTAAGATCAAAGTGC+AGG | + | chr5_2:77063630-77063649 | Msa0789250:CDS | 35.0% | |
| ! | GCAGATAAGTTTAAGACCTT+TGG | + | chr5_2:77063765-77063784 | Msa0789250:CDS | 35.0% |
| ! | TCCATGTTTTGCAAAGATTG+TGG | + | chr5_2:77063798-77063817 | Msa0789250:CDS | 35.0% |
| ACCACAATCTTTGCAAAACA+TGG | - | chr5_2:77063802-77063821 | None:intergenic | 35.0% | |
| AAAGATTGTGGTGTCTTTGA+TGG | + | chr5_2:77063810-77063829 | Msa0789250:CDS | 35.0% | |
| !!! | ATTTTGAGTTGGCGATATCT+GGG | + | chr5_2:77063959-77063978 | Msa0789250:CDS | 35.0% |
| GTTGTATTGCTTCCTTAAAC+TGG | + | chr5_2:77064185-77064204 | Msa0789250:intron | 35.0% | |
| ACAGATAAGTTTCAATGCTG+AGG | - | chr5_2:77064267-77064286 | None:intergenic | 35.0% | |
| GCACTTTATCGAGCAAAAAA+AGG | + | chr5_2:77064436-77064455 | Msa0789250:CDS | 35.0% | |
| ATGTCTTCCAACCTATATGA+AGG | + | chr5_2:77064493-77064512 | Msa0789250:CDS | 35.0% | |
| TGTCTTCCAACCTATATGAA+GGG | + | chr5_2:77064494-77064513 | Msa0789250:CDS | 35.0% | |
| TAATGCTAGACCCTTCATAT+AGG | - | chr5_2:77064507-77064526 | None:intergenic | 35.0% | |
| ATATGAAGGGTCTAGCATTA+TGG | + | chr5_2:77064507-77064526 | Msa0789250:CDS | 35.0% | |
| TATGAAGGGTCTAGCATTAT+GGG | + | chr5_2:77064508-77064527 | Msa0789250:CDS | 35.0% | |
| GCTAAGATCAGCAAAATTTC+AGG | + | chr5_2:77063320-77063339 | Msa0789250:CDS | 35.0% | |
| TACCCCTATAAATGAAAGAG+AGG | - | chr5_2:77063471-77063490 | None:intergenic | 35.0% | |
| ! | TTCTGCAGGTATGAAAGTTT+TGG | + | chr5_2:77063525-77063544 | Msa0789250:intron | 35.0% |
| GCAAGGTCAATACTATGTTT+GGG | - | chr5_2:77063603-77063622 | None:intergenic | 35.0% | |
| TGCAAGGTCAATACTATGTT+TGG | - | chr5_2:77063604-77063623 | None:intergenic | 35.0% | |
| CTTAATAGACAACACATGCA+AGG | - | chr5_2:77063620-77063639 | None:intergenic | 35.0% | |
| GTCTATTAAGATCAAAGTGC+AGG | + | chr5_2:77063630-77063649 | Msa0789250:CDS | 35.0% | |
| ! | GCAGATAAGTTTAAGACCTT+TGG | + | chr5_2:77063765-77063784 | Msa0789250:CDS | 35.0% |
| ! | TCCATGTTTTGCAAAGATTG+TGG | + | chr5_2:77063798-77063817 | Msa0789250:CDS | 35.0% |
| ACCACAATCTTTGCAAAACA+TGG | - | chr5_2:77063802-77063821 | None:intergenic | 35.0% | |
| AAAGATTGTGGTGTCTTTGA+TGG | + | chr5_2:77063810-77063829 | Msa0789250:CDS | 35.0% | |
| !!! | ATTTTGAGTTGGCGATATCT+GGG | + | chr5_2:77063959-77063978 | Msa0789250:CDS | 35.0% |
| GTTGTATTGCTTCCTTAAAC+TGG | + | chr5_2:77064185-77064204 | Msa0789250:intron | 35.0% | |
| ACAGATAAGTTTCAATGCTG+AGG | - | chr5_2:77064267-77064286 | None:intergenic | 35.0% | |
| GCACTTTATCGAGCAAAAAA+AGG | + | chr5_2:77064436-77064455 | Msa0789250:CDS | 35.0% | |
| ATGTCTTCCAACCTATATGA+AGG | + | chr5_2:77064493-77064512 | Msa0789250:CDS | 35.0% | |
| TGTCTTCCAACCTATATGAA+GGG | + | chr5_2:77064494-77064513 | Msa0789250:CDS | 35.0% | |
| TAATGCTAGACCCTTCATAT+AGG | - | chr5_2:77064507-77064526 | None:intergenic | 35.0% | |
| ATATGAAGGGTCTAGCATTA+TGG | + | chr5_2:77064507-77064526 | Msa0789250:CDS | 35.0% | |
| TATGAAGGGTCTAGCATTAT+GGG | + | chr5_2:77064508-77064527 | Msa0789250:CDS | 35.0% | |
| ! | TTTGGAGCAACACCCTTAAT+AGG | - | chr5_2:77063245-77063264 | None:intergenic | 40.0% |
| GTGAACACAAGTGAAATGCA+AGG | + | chr5_2:77063296-77063315 | Msa0789250:exon | 40.0% | |
| AAACATGTCATCAAATGGGC+TGG | + | chr5_2:77063574-77063593 | Msa0789250:CDS | 40.0% | |
| ! | TTCTAATTTTCGGTGAGGGT+AGG | - | chr5_2:77063665-77063684 | None:intergenic | 40.0% |
| TGTCTTTGATGGAGAAGGTA+AGG | + | chr5_2:77063821-77063840 | Msa0789250:intron | 40.0% | |
| GTCTTTGATGGAGAAGGTAA+GGG | + | chr5_2:77063822-77063841 | Msa0789250:intron | 40.0% | |
| GTTCAATTTACAGCCTCATG+TGG | + | chr5_2:77063936-77063955 | Msa0789250:intron | 40.0% | |
| !!! | GATTTTGAGTTGGCGATATC+TGG | + | chr5_2:77063958-77063977 | Msa0789250:CDS | 40.0% |
| !!! | TTTTGAGTTGGCGATATCTG+GGG | + | chr5_2:77063960-77063979 | Msa0789250:CDS | 40.0% |
| ! | TCACAAGATGAAAGGTATGC+TGG | + | chr5_2:77064153-77064172 | Msa0789250:intron | 40.0% |
| CGATAAAGTGCGCAATTGTT+GGG | - | chr5_2:77064427-77064446 | None:intergenic | 40.0% | |
| TCGATAAAGTGCGCAATTGT+TGG | - | chr5_2:77064428-77064447 | None:intergenic | 40.0% | |
| !! | TATGGGAGGTGAGGTTTTAA+AGG | + | chr5_2:77064525-77064544 | Msa0789250:CDS | 40.0% |
| ! | TTTGGAGCAACACCCTTAAT+AGG | - | chr5_2:77063245-77063264 | None:intergenic | 40.0% |
| GTGAACACAAGTGAAATGCA+AGG | + | chr5_2:77063296-77063315 | Msa0789250:exon | 40.0% | |
| AAACATGTCATCAAATGGGC+TGG | + | chr5_2:77063574-77063593 | Msa0789250:CDS | 40.0% | |
| ! | TTCTAATTTTCGGTGAGGGT+AGG | - | chr5_2:77063665-77063684 | None:intergenic | 40.0% |
| TGTCTTTGATGGAGAAGGTA+AGG | + | chr5_2:77063821-77063840 | Msa0789250:intron | 40.0% | |
| GTCTTTGATGGAGAAGGTAA+GGG | + | chr5_2:77063822-77063841 | Msa0789250:intron | 40.0% | |
| GTTCAATTTACAGCCTCATG+TGG | + | chr5_2:77063936-77063955 | Msa0789250:intron | 40.0% | |
| !!! | GATTTTGAGTTGGCGATATC+TGG | + | chr5_2:77063958-77063977 | Msa0789250:CDS | 40.0% |
| !!! | TTTTGAGTTGGCGATATCTG+GGG | + | chr5_2:77063960-77063979 | Msa0789250:CDS | 40.0% |
| ! | TCACAAGATGAAAGGTATGC+TGG | + | chr5_2:77064153-77064172 | Msa0789250:intron | 40.0% |
| CGATAAAGTGCGCAATTGTT+GGG | - | chr5_2:77064427-77064446 | None:intergenic | 40.0% | |
| TCGATAAAGTGCGCAATTGT+TGG | - | chr5_2:77064428-77064447 | None:intergenic | 40.0% | |
| ! | CATGGAAGTGTAGACACCAA+AGG | - | chr5_2:77063784-77063803 | None:intergenic | 45.0% |
| TGTGGTGTCTTTGATGGAGA+AGG | + | chr5_2:77063816-77063835 | Msa0789250:CDS | 45.0% | |
| !! | GCCTCATGTGGATTTTGAGT+TGG | + | chr5_2:77063948-77063967 | Msa0789250:intron | 45.0% |
| GCCAACTCAAAATCCACATG+AGG | - | chr5_2:77063952-77063971 | None:intergenic | 45.0% | |
| !! | TTTGAGTTGGCGATATCTGG+GGG | + | chr5_2:77063961-77063980 | Msa0789250:CDS | 45.0% |
| GAGGTCAAAACCATGTTCCA+CGG | - | chr5_2:77064097-77064116 | None:intergenic | 45.0% | |
| !!! | GGAACATGGTTTTGACCTCA+AGG | + | chr5_2:77064098-77064117 | Msa0789250:intron | 45.0% |
| ! | TGCTCGATTTCTAGACGAGA+CGG | + | chr5_2:77064226-77064245 | Msa0789250:intron | 45.0% |
| AAAGTGCGCAATTGTTGGGA+GGG | - | chr5_2:77064423-77064442 | None:intergenic | 45.0% | |
| TAAAGTGCGCAATTGTTGGG+AGG | - | chr5_2:77064424-77064443 | None:intergenic | 45.0% | |
| GCTAGACCCTTCATATAGGT+TGG | - | chr5_2:77064503-77064522 | None:intergenic | 45.0% | |
| ! | CATGGAAGTGTAGACACCAA+AGG | - | chr5_2:77063784-77063803 | None:intergenic | 45.0% |
| TGTGGTGTCTTTGATGGAGA+AGG | + | chr5_2:77063816-77063835 | Msa0789250:CDS | 45.0% | |
| !! | GCCTCATGTGGATTTTGAGT+TGG | + | chr5_2:77063948-77063967 | Msa0789250:intron | 45.0% |
| GCCAACTCAAAATCCACATG+AGG | - | chr5_2:77063952-77063971 | None:intergenic | 45.0% | |
| !! | TTTGAGTTGGCGATATCTGG+GGG | + | chr5_2:77063961-77063980 | Msa0789250:CDS | 45.0% |
| GAGGTCAAAACCATGTTCCA+CGG | - | chr5_2:77064097-77064116 | None:intergenic | 45.0% | |
| !!! | GGAACATGGTTTTGACCTCA+AGG | + | chr5_2:77064098-77064117 | Msa0789250:intron | 45.0% |
| ! | TGCTCGATTTCTAGACGAGA+CGG | + | chr5_2:77064226-77064245 | Msa0789250:intron | 45.0% |
| AAAGTGCGCAATTGTTGGGA+GGG | - | chr5_2:77064423-77064442 | None:intergenic | 45.0% | |
| TAAAGTGCGCAATTGTTGGG+AGG | - | chr5_2:77064424-77064443 | None:intergenic | 45.0% | |
| GCTAGACCCTTCATATAGGT+TGG | - | chr5_2:77064503-77064522 | None:intergenic | 45.0% | |
| !!! | AATTATTATTTTCTAATTTT+CGG | - | chr5_2:77063675-77063694 | None:intergenic | 5.0% |
| !!! | AATTATTATTTTCTAATTTT+CGG | - | chr5_2:77063675-77063694 | None:intergenic | 5.0% |
| !! | TTGAGTTGGCGATATCTGGG+GGG | + | chr5_2:77063962-77063981 | Msa0789250:CDS | 50.0% |
| CCATCAGTTGCGCCAGTTTA+AGG | - | chr5_2:77064200-77064219 | None:intergenic | 50.0% | |
| CCTTAAACTGGCGCAACTGA+TGG | + | chr5_2:77064197-77064216 | Msa0789250:intron | 50.0% | |
| ! | TAAGGGAACCTCGAGTTGTG+AGG | + | chr5_2:77064372-77064391 | Msa0789250:CDS | 50.0% |
| ! | AAGGGAACCTCGAGTTGTGA+GGG | + | chr5_2:77064373-77064392 | Msa0789250:CDS | 50.0% |
| AAACCAACCCTCACAACTCG+AGG | - | chr5_2:77064383-77064402 | None:intergenic | 50.0% | |
| GAAGGGTCTAGCATTATGGG+AGG | + | chr5_2:77064511-77064530 | Msa0789250:CDS | 50.0% | |
| GTCTAGCATTATGGGAGGTG+AGG | + | chr5_2:77064516-77064535 | Msa0789250:CDS | 50.0% | |
| !! | TTGAGTTGGCGATATCTGGG+GGG | + | chr5_2:77063962-77063981 | Msa0789250:CDS | 50.0% |
| CCATCAGTTGCGCCAGTTTA+AGG | - | chr5_2:77064200-77064219 | None:intergenic | 50.0% | |
| CCTTAAACTGGCGCAACTGA+TGG | + | chr5_2:77064197-77064216 | Msa0789250:intron | 50.0% | |
| ! | TAAGGGAACCTCGAGTTGTG+AGG | + | chr5_2:77064372-77064391 | Msa0789250:CDS | 50.0% |
| ! | AAGGGAACCTCGAGTTGTGA+GGG | + | chr5_2:77064373-77064392 | Msa0789250:CDS | 50.0% |
| AAACCAACCCTCACAACTCG+AGG | - | chr5_2:77064383-77064402 | None:intergenic | 50.0% | |
| GAAGGGTCTAGCATTATGGG+AGG | + | chr5_2:77064511-77064530 | Msa0789250:CDS | 50.0% | |
| GTCTAGCATTATGGGAGGTG+AGG | + | chr5_2:77064516-77064535 | Msa0789250:CDS | 50.0% | |
| ! | TGAGTTGGCGATATCTGGGG+GGG | + | chr5_2:77063963-77063982 | Msa0789250:CDS | 55.0% |
| ATCTGGGGGGGACATCGTAT+AGG | + | chr5_2:77063975-77063994 | Msa0789250:intron | 55.0% | |
| !! | GAGAGAGCTGTGGCGGATTA+CGG | - | chr5_2:77064075-77064094 | None:intergenic | 55.0% |
| ATGTTCCACGGAGAGAGCTG+TGG | - | chr5_2:77064085-77064104 | None:intergenic | 55.0% | |
| ACAGCTCTCTCCGTGGAACA+TGG | + | chr5_2:77064084-77064103 | Msa0789250:intron | 55.0% | |
| ! | GAACCTCGAGTTGTGAGGGT+TGG | + | chr5_2:77064377-77064396 | Msa0789250:CDS | 55.0% |
| ! | TGAGTTGGCGATATCTGGGG+GGG | + | chr5_2:77063963-77063982 | Msa0789250:CDS | 55.0% |
| ATCTGGGGGGGACATCGTAT+AGG | + | chr5_2:77063975-77063994 | Msa0789250:intron | 55.0% | |
| !! | GAGAGAGCTGTGGCGGATTA+CGG | - | chr5_2:77064075-77064094 | None:intergenic | 55.0% |
| ATGTTCCACGGAGAGAGCTG+TGG | - | chr5_2:77064085-77064104 | None:intergenic | 55.0% | |
| ACAGCTCTCTCCGTGGAACA+TGG | + | chr5_2:77064084-77064103 | Msa0789250:intron | 55.0% | |
| ! | GAACCTCGAGTTGTGAGGGT+TGG | + | chr5_2:77064377-77064396 | Msa0789250:CDS | 55.0% |
| TTCCACGGAGAGAGCTGTGG+CGG | - | chr5_2:77064082-77064101 | None:intergenic | 60.0% | |
| TTCCACGGAGAGAGCTGTGG+CGG | - | chr5_2:77064082-77064101 | None:intergenic | 60.0% | |
| ATCCGCCACAGCTCTCTCCG+TGG | + | chr5_2:77064077-77064096 | Msa0789250:intron | 65.0% | |
| ATCCGCCACAGCTCTCTCCG+TGG | + | chr5_2:77064077-77064096 | Msa0789250:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 77063208 | 77064544 | 77063208 | ID=Msa0789250;Name=Msa0789250 |
| chr5_2 | mRNA | 77063208 | 77064544 | 77063208 | ID=Msa0789250-mRNA-1;Parent=Msa0789250;Name=Msa0789250-mRNA-1;_AED=0.11;_eAED=0.11;_QI=103|0.75|0.6|1|1|1|5|0|165 |
| chr5_2 | exon | 77063208 | 77063341 | 77063208 | ID=Msa0789250-mRNA-1:exon:23462;Parent=Msa0789250-mRNA-1 |
| chr5_2 | exon | 77063533 | 77063651 | 77063533 | ID=Msa0789250-mRNA-1:exon:23463;Parent=Msa0789250-mRNA-1 |
| chr5_2 | exon | 77063736 | 77063837 | 77063736 | ID=Msa0789250-mRNA-1:exon:23464;Parent=Msa0789250-mRNA-1 |
| chr5_2 | exon | 77063949 | 77063990 | 77063949 | ID=Msa0789250-mRNA-1:exon:23465;Parent=Msa0789250-mRNA-1 |
| chr5_2 | exon | 77064341 | 77064544 | 77064341 | ID=Msa0789250-mRNA-1:exon:23466;Parent=Msa0789250-mRNA-1 |
| chr5_2 | five_prime_UTR | 77063208 | 77063310 | 77063208 | ID=Msa0789250-mRNA-1:five_prime_utr;Parent=Msa0789250-mRNA-1 |
| chr5_2 | CDS | 77063311 | 77063341 | 77063311 | ID=Msa0789250-mRNA-1:cds;Parent=Msa0789250-mRNA-1 |
| chr5_2 | CDS | 77063533 | 77063651 | 77063533 | ID=Msa0789250-mRNA-1:cds;Parent=Msa0789250-mRNA-1 |
| chr5_2 | CDS | 77063736 | 77063837 | 77063736 | ID=Msa0789250-mRNA-1:cds;Parent=Msa0789250-mRNA-1 |
| chr5_2 | CDS | 77063949 | 77063990 | 77063949 | ID=Msa0789250-mRNA-1:cds;Parent=Msa0789250-mRNA-1 |
| chr5_2 | CDS | 77064341 | 77064544 | 77064341 | ID=Msa0789250-mRNA-1:cds;Parent=Msa0789250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
