Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556750 | XP_024638054.1 | 98.695 | 383 | 5 | 0 | 1 | 383 | 1 | 383 | 0.0 | 764 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556750 | sp|O81155|CYSKP_SOLTU | 81.449 | 345 | 61 | 2 | 41 | 382 | 41 | 385 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556750 | A0A396I9J9 | 98.695 | 383 | 5 | 0 | 1 | 383 | 1 | 383 | 0.0 | 764 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008820 | Msa0556750 | 0.809896 | 1.508209e-50 | -8.615850e-47 |
| Msa0032990 | Msa0556750 | 0.817457 | 3.265542e-52 | -8.615850e-47 |
| Msa0039140 | Msa0556750 | 0.823268 | 1.517787e-53 | -8.615850e-47 |
| Msa0141770 | Msa0556750 | 0.820607 | 6.273799e-53 | -8.615850e-47 |
| Msa0219550 | Msa0556750 | 0.809369 | 1.958176e-50 | -8.615850e-47 |
| Msa0429490 | Msa0556750 | 0.813685 | 2.258854e-51 | -8.615850e-47 |
| Msa0429560 | Msa0556750 | 0.812705 | 3.706417e-51 | -8.615850e-47 |
| Msa0252150 | Msa0556750 | 0.838451 | 2.854056e-57 | -8.615850e-47 |
| Msa0281310 | Msa0556750 | 0.805110 | 1.563662e-49 | -8.615850e-47 |
| Msa0321100 | Msa0556750 | 0.810922 | 9.060643e-51 | -8.615850e-47 |
| Msa0521190 | Msa0556750 | 0.811469 | 6.891932e-51 | -8.615850e-47 |
| Msa0544710 | Msa0556750 | 0.872069 | 4.219289e-67 | -8.615850e-47 |
| Msa0556750 | Msa0557770 | 0.814458 | 1.524960e-51 | -8.615850e-47 |
| Msa0556750 | Msa0559280 | 0.835643 | 1.489258e-56 | -8.615850e-47 |
| Msa0556750 | Msa0561750 | 0.801212 | 1.001457e-48 | -8.615850e-47 |
| Msa0556750 | Msa0580360 | 0.803333 | 3.664551e-49 | -8.615850e-47 |
| Msa0556750 | Msa0623470 | 0.812550 | 4.007190e-51 | -8.615850e-47 |
| Msa0556750 | Msa0653090 | 0.833408 | 5.426119e-56 | -8.615850e-47 |
| Msa0556750 | Msa0803930 | 0.804807 | 1.809351e-49 | -8.615850e-47 |
| Msa0556750 | Msa0888460 | 0.805748 | 1.149380e-49 | -8.615850e-47 |
| Msa0556750 | Msa0928340 | 0.832934 | 7.118598e-56 | -8.615850e-47 |
| Msa0556750 | Msa0938190 | 0.808059 | 3.730576e-50 | -8.615850e-47 |
| Msa0556750 | Msa1032760 | 0.800862 | 1.180870e-48 | -8.615850e-47 |
| Msa0556750 | Msa1058590 | 0.801226 | 9.949428e-49 | -8.615850e-47 |
| Msa0556750 | Msa1088300 | 0.817623 | 2.996536e-52 | -8.615850e-47 |
| Msa0556750 | Msa1224150 | 0.803792 | 2.944016e-49 | -8.615850e-47 |
| Msa0556750 | Msa1302750 | 0.805992 | 1.021197e-49 | -8.615850e-47 |
| Msa0556750 | Msa1410770 | 0.807340 | 5.301870e-50 | -8.615850e-47 |
| Msa0556750 | Msa1425510 | 0.804756 | 1.853721e-49 | -8.615850e-47 |
| Msa0556750 | Msa1462210 | 0.805391 | 1.365356e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556750 | MtrunA17_Chr4g0045781 | 98.695 | 383 | 5 | 0 | 1 | 383 | 1 | 383 | 0.0 | 764 |
| Msa0556750 | MtrunA17_Chr4g0045721 | 82.507 | 343 | 57 | 1 | 41 | 383 | 25 | 364 | 0.0 | 582 |
| Msa0556750 | MtrunA17_Chr4g0045771 | 70.235 | 383 | 86 | 4 | 1 | 383 | 1 | 355 | 0.0 | 540 |
| Msa0556750 | MtrunA17_Chr5g0394491 | 73.684 | 323 | 85 | 0 | 61 | 383 | 3 | 325 | 1.52e-161 | 456 |
| Msa0556750 | MtrunA17_Chr1g0205381 | 73.684 | 323 | 85 | 0 | 61 | 383 | 3 | 325 | 8.20e-161 | 454 |
| Msa0556750 | MtrunA17_Chr1g0191041 | 73.885 | 314 | 82 | 0 | 66 | 379 | 8 | 321 | 8.48e-156 | 441 |
| Msa0556750 | MtrunA17_Chr1g0191051 | 66.879 | 314 | 104 | 0 | 66 | 379 | 7 | 320 | 3.90e-145 | 414 |
| Msa0556750 | MtrunA17_Chr7g0254401 | 66.358 | 324 | 96 | 2 | 59 | 379 | 55 | 368 | 1.85e-143 | 412 |
| Msa0556750 | MtrunA17_Chr7g0248021 | 61.059 | 321 | 125 | 0 | 61 | 381 | 56 | 376 | 1.18e-141 | 407 |
| Msa0556750 | MtrunA17_Chr1g0191061 | 58.146 | 356 | 103 | 2 | 70 | 379 | 25 | 380 | 9.79e-129 | 375 |
| Msa0556750 | MtrunA17_Chr1g0191071 | 61.798 | 267 | 95 | 2 | 114 | 379 | 1 | 261 | 3.53e-97 | 290 |
| Msa0556750 | MtrunA17_Chr5g0446431 | 26.912 | 353 | 199 | 7 | 70 | 365 | 48 | 398 | 9.56e-34 | 130 |
| Msa0556750 | MtrunA17_Chr2g0310201 | 41.304 | 138 | 45 | 5 | 130 | 240 | 6 | 134 | 1.91e-18 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556750 | AT2G43750.1 | 73.537 | 393 | 91 | 3 | 1 | 382 | 1 | 391 | 0.0 | 543 |
| Msa0556750 | AT2G43750.2 | 73.537 | 393 | 91 | 3 | 1 | 382 | 1 | 391 | 0.0 | 543 |
| Msa0556750 | AT3G59760.3 | 81.791 | 335 | 59 | 1 | 48 | 382 | 97 | 429 | 0.0 | 539 |
| Msa0556750 | AT3G59760.1 | 81.791 | 335 | 59 | 1 | 48 | 382 | 97 | 429 | 0.0 | 539 |
| Msa0556750 | AT3G59760.2 | 81.433 | 307 | 55 | 1 | 48 | 354 | 97 | 401 | 7.89e-173 | 489 |
| Msa0556750 | AT4G14880.5 | 70.347 | 317 | 94 | 0 | 66 | 382 | 5 | 321 | 5.69e-154 | 437 |
| Msa0556750 | AT4G14880.3 | 70.347 | 317 | 94 | 0 | 66 | 382 | 5 | 321 | 5.69e-154 | 437 |
| Msa0556750 | AT4G14880.4 | 70.347 | 317 | 94 | 0 | 66 | 382 | 5 | 321 | 5.69e-154 | 437 |
| Msa0556750 | AT4G14880.2 | 70.347 | 317 | 94 | 0 | 66 | 382 | 5 | 321 | 5.69e-154 | 437 |
| Msa0556750 | AT4G14880.1 | 70.347 | 317 | 94 | 0 | 66 | 382 | 5 | 321 | 5.69e-154 | 437 |
| Msa0556750 | AT3G04940.1 | 68.254 | 315 | 100 | 0 | 65 | 379 | 7 | 321 | 1.17e-145 | 416 |
| Msa0556750 | AT3G04940.2 | 68.254 | 315 | 100 | 0 | 65 | 379 | 7 | 321 | 1.17e-145 | 416 |
| Msa0556750 | AT5G28020.2 | 66.242 | 314 | 106 | 0 | 66 | 379 | 7 | 320 | 5.89e-139 | 399 |
| Msa0556750 | AT5G28020.4 | 66.242 | 314 | 106 | 0 | 66 | 379 | 7 | 320 | 5.89e-139 | 399 |
| Msa0556750 | AT5G28020.1 | 66.242 | 314 | 106 | 0 | 66 | 379 | 7 | 320 | 5.89e-139 | 399 |
| Msa0556750 | AT5G28020.3 | 66.242 | 314 | 106 | 0 | 66 | 379 | 7 | 320 | 5.89e-139 | 399 |
| Msa0556750 | AT5G28020.6 | 66.242 | 314 | 106 | 0 | 66 | 379 | 7 | 320 | 5.89e-139 | 399 |
| Msa0556750 | AT5G28030.1 | 65.615 | 317 | 109 | 0 | 66 | 382 | 7 | 323 | 8.38e-136 | 391 |
| Msa0556750 | AT5G28030.4 | 65.615 | 317 | 109 | 0 | 66 | 382 | 7 | 323 | 8.38e-136 | 391 |
| Msa0556750 | AT5G28030.5 | 65.615 | 317 | 109 | 0 | 66 | 382 | 7 | 323 | 8.38e-136 | 391 |
| Msa0556750 | AT5G28030.2 | 65.615 | 317 | 109 | 0 | 66 | 382 | 7 | 323 | 8.38e-136 | 391 |
| Msa0556750 | AT3G61440.1 | 55.301 | 349 | 155 | 1 | 33 | 381 | 17 | 364 | 5.06e-134 | 388 |
| Msa0556750 | AT3G03630.1 | 63.636 | 319 | 106 | 1 | 62 | 380 | 95 | 403 | 1.14e-130 | 381 |
| Msa0556750 | AT3G22460.1 | 64.444 | 270 | 76 | 1 | 114 | 383 | 1 | 250 | 4.68e-121 | 350 |
| Msa0556750 | AT3G61440.2 | 61.940 | 268 | 102 | 0 | 114 | 381 | 1 | 268 | 4.28e-116 | 339 |
| Msa0556750 | AT3G61440.4 | 53.872 | 297 | 136 | 1 | 33 | 329 | 17 | 312 | 1.94e-108 | 322 |
| Msa0556750 | AT5G28030.3 | 64.344 | 244 | 87 | 0 | 66 | 309 | 7 | 250 | 1.57e-104 | 309 |
| Msa0556750 | AT3G61440.3 | 61.157 | 242 | 94 | 0 | 140 | 381 | 2 | 243 | 1.15e-102 | 304 |
| Msa0556750 | AT3G22460.2 | 72.928 | 181 | 49 | 0 | 66 | 246 | 8 | 188 | 1.13e-96 | 286 |
| Msa0556750 | AT5G28020.5 | 63.675 | 234 | 85 | 0 | 146 | 379 | 1 | 234 | 6.87e-93 | 278 |
| Msa0556750 | AT1G55880.1 | 27.348 | 362 | 203 | 6 | 62 | 365 | 36 | 395 | 4.15e-36 | 136 |
| Msa0556750 | AT1G55880.2 | 29.032 | 248 | 134 | 3 | 62 | 268 | 36 | 282 | 1.57e-31 | 122 |
Find 119 sgRNAs with CRISPR-Local
Find 468 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGCTGCAGCTGCATTGC+AGG | 0.091196 | 4_1:-55013741 | Msa0556750:CDS |
| GGAACTGGTGGAACCATTTC+TGG | 0.116462 | 4_1:-55015659 | Msa0556750:CDS |
| TTCAGACCACAGGGAAATTT+TGG | 0.133734 | 4_1:+55018652 | None:intergenic |
| TGCTGCTAAGCTTGAGATTA+TGG | 0.213789 | 4_1:-55018261 | Msa0556750:CDS |
| CAAATTCTGCATAATGTTCT+TGG | 0.214830 | 4_1:-55013110 | Msa0556750:three_prime_UTR |
| CCCTTCAACAATACAGTTTC+CGG | 0.225788 | 4_1:-55013204 | Msa0556750:three_prime_UTR |
| CTCGAAAGCAACATACTTTC+AGG | 0.252788 | 4_1:-55015374 | Msa0556750:CDS |
| GAAAATGAGGGAAAGCTTAT+TGG | 0.259838 | 4_1:-55013704 | Msa0556750:CDS |
| TTCCGGATATCCTTGCATTT+TGG | 0.283912 | 4_1:-55013187 | Msa0556750:three_prime_UTR |
| CTCACAAAATTCAGGGTATT+GGG | 0.285360 | 4_1:-55015241 | Msa0556750:CDS |
| AAAAGTCAATGAGTTGATTA+AGG | 0.295418 | 4_1:+55018607 | None:intergenic |
| AGGACTAATAGAATAGAAAA+AGG | 0.300088 | 4_1:-55018762 | Msa0556750:five_prime_UTR |
| CACAGGACCTCACAAAATTC+AGG | 0.311237 | 4_1:-55015249 | Msa0556750:intron |
| AAAATGAGGGAAAGCTTATT+GGG | 0.318994 | 4_1:-55013703 | Msa0556750:CDS |
| AGACAACTGGGCCAGAGATA+TGG | 0.320313 | 4_1:-55015724 | Msa0556750:CDS |
| CACTTCTTCATCCAAATTCC+TGG | 0.322667 | 4_1:+55015205 | None:intergenic |
| AATGCCTGCTTCCATGAGTT+TGG | 0.334639 | 4_1:-55016385 | Msa0556750:CDS |
| ACCTTTAGAAGCTGCTATAA+AGG | 0.347698 | 4_1:+55016425 | None:intergenic |
| AATTACCTTCCCAGGTGTTA+TGG | 0.349471 | 4_1:+55017882 | None:intergenic |
| AAACGTGTAAAATTATTTCA+TGG | 0.356549 | 4_1:+55013382 | None:intergenic |
| AAACAGGTGGGAATTTCTTC+AGG | 0.360612 | 4_1:-55013767 | Msa0556750:intron |
| GAGACCTTCAATGGTGGTTT+GGG | 0.363427 | 4_1:+55018451 | None:intergenic |
| GTATGCACTTCAGAGTGTTT+TGG | 0.374207 | 4_1:-55016484 | Msa0556750:intron |
| CCGTTTACCTTGGGATTTGA+AGG | 0.382196 | 4_1:+55016222 | None:intergenic |
| CCTCACAAAATTCAGGGTAT+TGG | 0.396380 | 4_1:-55015242 | Msa0556750:CDS |
| AGCACTTCAGGAAGGCTTGC+TGG | 0.399953 | 4_1:-55014384 | Msa0556750:intron |
| GAGACGGCCTTGCATAGAAC+GGG | 0.412259 | 4_1:+55018482 | None:intergenic |
| ACTAGTGGGAACACAGGAAT+TGG | 0.412669 | 4_1:-55016453 | Msa0556750:CDS |
| TACAAAGCAAATAGCACTTC+AGG | 0.414950 | 4_1:-55014396 | Msa0556750:CDS |
| GAATCGACCGGTTCCAGAAA+TGG | 0.416931 | 4_1:+55015646 | None:intergenic |
| CAGGTTGTATTCCCAAGCTT+TGG | 0.417755 | 4_1:-55013472 | Msa0556750:CDS |
| CAATGAGTTGATTAAGGAAG+TGG | 0.419597 | 4_1:+55018613 | None:intergenic |
| TGAGACCTTCAATGGTGGTT+TGG | 0.427764 | 4_1:+55018450 | None:intergenic |
| GAAATTAGAAGCTTCTGAAC+TGG | 0.429360 | 4_1:-55013260 | Msa0556750:three_prime_UTR |
| GATTCTGGTGGAGATGGAAC+GGG | 0.429833 | 4_1:+55018511 | None:intergenic |
| TTGTTGTTGGTTCAGACCAC+AGG | 0.439570 | 4_1:+55018642 | None:intergenic |
| CTCCAAAATGCAAGGATATC+CGG | 0.440683 | 4_1:+55013185 | None:intergenic |
| AAATATCTTTCACCAAAGCT+TGG | 0.442789 | 4_1:+55013460 | None:intergenic |
| GACAACTGGGCCAGAGATAT+GGG | 0.443535 | 4_1:-55015723 | Msa0556750:CDS |
| CTTGTATCTTCCCATATCTC+TGG | 0.446743 | 4_1:+55015713 | None:intergenic |
| AGCGAATTGGAGGGAAGAGG+TGG | 0.446915 | 4_1:+55018541 | None:intergenic |
| AATATCTTTCACCAAAGCTT+GGG | 0.452193 | 4_1:+55013461 | None:intergenic |
| TTCTATTAGTCCTAAAATTG+TGG | 0.454874 | 4_1:+55018772 | None:intergenic |
| GCCTTTATAGCAGCTTCTAA+AGG | 0.455275 | 4_1:-55016426 | Msa0556750:CDS |
| TTAGTTGCAGGGATTGGAAC+TGG | 0.459281 | 4_1:-55015674 | Msa0556750:CDS |
| GGTGGAACCATTTCTGGAAC+CGG | 0.466565 | 4_1:-55015653 | Msa0556750:CDS |
| GGAAGAGATTCTGGTGGAGA+TGG | 0.470662 | 4_1:+55018505 | None:intergenic |
| GAAGTGGAAGCCATTGTTGT+TGG | 0.472255 | 4_1:+55018629 | None:intergenic |
| AACTCGTCTTTCCAAACTCA+TGG | 0.475233 | 4_1:+55016374 | None:intergenic |
| AATTCCCAAACCACCATTGA+AGG | 0.477501 | 4_1:-55018455 | Msa0556750:CDS |
| CAATCATCCACCATGCTGTA+AGG | 0.479621 | 4_1:-55013337 | Msa0556750:three_prime_UTR |
| AATGGTGGTTTGGGAATTGA+CGG | 0.483524 | 4_1:+55018460 | None:intergenic |
| GATAGCGAATTGGAGGGAAG+AGG | 0.491639 | 4_1:+55018538 | None:intergenic |
| TCCGGAAACTGTATTGTTGA+AGG | 0.495153 | 4_1:+55013203 | None:intergenic |
| ATTCCTGTGTTCCCACTAGT+AGG | 0.495325 | 4_1:+55016456 | None:intergenic |
| GTAAAATTATTTCATGGCTC+CGG | 0.496021 | 4_1:+55013388 | None:intergenic |
| GCGAATTGGAGGGAAGAGGT+GGG | 0.496913 | 4_1:+55018542 | None:intergenic |
| GGCAATGTTGAGACCTTCAA+TGG | 0.499106 | 4_1:+55018442 | None:intergenic |
| TGCAAAGAGGCCTGAAAATG+AGG | 0.501476 | 4_1:-55013717 | Msa0556750:CDS |
| ATACTTTCAGGTGGAAAGCC+AGG | 0.503845 | 4_1:-55015362 | Msa0556750:intron |
| AAAATTCAGGGTATTGGGGC+TGG | 0.504330 | 4_1:-55015236 | Msa0556750:CDS |
| CGAATTGGAGGGAAGAGGTG+GGG | 0.506022 | 4_1:+55018543 | None:intergenic |
| AGTTTCAATAGCTTCATCAC+TGG | 0.506395 | 4_1:+55014418 | None:intergenic |
| GAATTGGAGGGAAGAGGTGG+GGG | 0.507509 | 4_1:+55018544 | None:intergenic |
| ATACTTGATGCTGAGAAGAA+AGG | 0.512921 | 4_1:-55017907 | Msa0556750:CDS |
| AGATTCTGGTGGAGATGGAA+CGG | 0.518004 | 4_1:+55018510 | None:intergenic |
| AGAATGTGAGAACATGCAAC+CGG | 0.525916 | 4_1:-55013407 | Msa0556750:CDS |
| CGGGTTAAGTAGTGAAAAGT+GGG | 0.534256 | 4_1:+55018572 | None:intergenic |
| ACAACAAAATTCAAAAGTAC+AGG | 0.534751 | 4_1:-55015618 | Msa0556750:intron |
| TGTTGAAGCATGTATGCATC+AGG | 0.535341 | 4_1:+55016255 | None:intergenic |
| CTTTCCAAACTCATGGAAGC+AGG | 0.537796 | 4_1:+55016381 | None:intergenic |
| AAGAAAGGAGCCATAACACC+TGG | 0.541723 | 4_1:-55017892 | Msa0556750:CDS |
| GAGGCTGCGAAGGGTATGAA+TGG | 0.541861 | 4_1:-55016315 | Msa0556750:CDS |
| AGTCCTAAAATTGTGGATTG+TGG | 0.543908 | 4_1:+55018779 | None:intergenic |
| ACTTCTTCATCCAAATTCCT+GGG | 0.547488 | 4_1:+55015206 | None:intergenic |
| CTTGTTGTAGTGTCAAAGAC+AGG | 0.551242 | 4_1:-55018235 | Msa0556750:intron |
| GGAGACGGCCTTGCATAGAA+CGG | 0.552788 | 4_1:+55018481 | None:intergenic |
| TATCTGAATAGCATCGCAAA+GGG | 0.561830 | 4_1:-55018299 | Msa0556750:CDS |
| ACGAACCTGAGTAACATCTT+CGG | 0.563992 | 4_1:+55018421 | None:intergenic |
| TGACAATCCTTCAAATCCCA+AGG | 0.564606 | 4_1:-55016229 | Msa0556750:intron |
| ACAGGACCTCACAAAATTCA+GGG | 0.564642 | 4_1:-55015248 | Msa0556750:intron |
| CATTGCCGAAGATGTTACTC+AGG | 0.579862 | 4_1:-55018426 | Msa0556750:intron |
| CTGCATTGCAGGTTGCAAAG+AGG | 0.579876 | 4_1:-55013730 | Msa0556750:CDS |
| TACAGCATGGTGGATGATTG+TGG | 0.582877 | 4_1:+55013340 | None:intergenic |
| GCGGGTTAAGTAGTGAAAAG+TGG | 0.583187 | 4_1:+55018571 | None:intergenic |
| CCGGAAACTGTATTGTTGAA+GGG | 0.584969 | 4_1:+55013204 | None:intergenic |
| ATGCTATTCAGATAAACCAT+TGG | 0.587114 | 4_1:+55018308 | None:intergenic |
| CATAGTCATGCCTTACAGCA+TGG | 0.588487 | 4_1:+55013327 | None:intergenic |
| AGGAGCCATAACACCTGGGA+AGG | 0.589374 | 4_1:-55017887 | Msa0556750:intron |
| TGTTGTTGGTTCAGACCACA+GGG | 0.590489 | 4_1:+55018643 | None:intergenic |
| TTAAACATGCCACTGATCAA+CGG | 0.596731 | 4_1:-55013227 | Msa0556750:three_prime_UTR |
| TCACAAAATTCAGGGTATTG+GGG | 0.597332 | 4_1:-55015240 | Msa0556750:CDS |
| ATTCTGGTGGAGATGGAACG+GGG | 0.597352 | 4_1:+55018512 | None:intergenic |
| GTTGAAGGGCCGTTGATCAG+TGG | 0.599793 | 4_1:+55013218 | None:intergenic |
| TTATCTGAATAGCATCGCAA+AGG | 0.601649 | 4_1:-55018300 | Msa0556750:CDS |
| GAAAGTATGTTGCTTTCGAG+AGG | 0.608190 | 4_1:+55015377 | None:intergenic |
| GCAAAGAGGCCTGAAAATGA+GGG | 0.613832 | 4_1:-55013716 | Msa0556750:CDS |
| GGTTTGGGAATTGACGGAGA+CGG | 0.614847 | 4_1:+55018466 | None:intergenic |
| CAACAAGAACAACAAAACCA+TGG | 0.617027 | 4_1:+55018847 | None:intergenic |
| TTCTGGTGGAGATGGAACGG+GGG | 0.632481 | 4_1:+55018513 | None:intergenic |
| AATGTTGAGACCTTCAATGG+TGG | 0.632812 | 4_1:+55018445 | None:intergenic |
| GTTGCAGGGATTGGAACTGG+TGG | 0.633044 | 4_1:-55015671 | Msa0556750:CDS |
| CTTAGCAGCAATATTAGCAA+CGG | 0.634906 | 4_1:+55018274 | None:intergenic |
| GTGGTCTGAACCAACAACAA+TGG | 0.644135 | 4_1:-55018639 | Msa0556750:exon |
| GAAAGCAACATACTTTCAGG+TGG | 0.653711 | 4_1:-55015371 | Msa0556750:CDS |
| TCTGGTGGAGATGGAACGGG+GGG | 0.661253 | 4_1:+55018514 | None:intergenic |
| AGAAAGGAGCCATAACACCT+GGG | 0.664252 | 4_1:-55017891 | Msa0556750:CDS |
| AAGCAAATAGCACTTCAGGA+AGG | 0.667188 | 4_1:-55014392 | Msa0556750:CDS |
| GAACCTACTAGTGGGAACAC+AGG | 0.672376 | 4_1:-55016459 | Msa0556750:CDS |
| CTGTCTTTGACACTACAACA+AGG | 0.672530 | 4_1:+55018236 | None:intergenic |
| AGACGGCCTTGCATAGAACG+GGG | 0.674721 | 4_1:+55018483 | None:intergenic |
| AGTGCTTGATGAAGTTATAG+CGG | 0.676373 | 4_1:-55015186 | Msa0556750:intron |
| AAATGAGGGAAAGCTTATTG+GGG | 0.682298 | 4_1:-55013702 | Msa0556750:intron |
| GAGATATGGGAAGATACAAG+AGG | 0.685029 | 4_1:-55015710 | Msa0556750:CDS |
| GACGGCCTTGCATAGAACGG+GGG | 0.692045 | 4_1:+55018484 | None:intergenic |
| GGTTAAGTAGTGAAAAGTGG+GGG | 0.700782 | 4_1:+55018574 | None:intergenic |
| CTCCTCCCAAAATTTCCCTG+TGG | 0.701659 | 4_1:-55018658 | Msa0556750:five_prime_UTR |
| GGGTTAAGTAGTGAAAAGTG+GGG | 0.716822 | 4_1:+55018573 | None:intergenic |
| AGTCATGCCTTACAGCATGG+TGG | 0.719047 | 4_1:+55013330 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATAAAAAAGAAATTTTTAA+TGG | + | chr4_1:55016500-55016519 | None:intergenic | 10.0% |
| !! | AATCTGTGTATTATTTATAT+GGG | + | chr4_1:55015161-55015180 | None:intergenic | 15.0% |
| !! | AAATCTGTGTATTATTTATA+TGG | + | chr4_1:55015162-55015181 | None:intergenic | 15.0% |
| !! | TAACTAAGAATGATAAAAAA+GGG | + | chr4_1:55015403-55015422 | None:intergenic | 15.0% |
| !! | TTAACTAAGAATGATAAAAA+AGG | + | chr4_1:55015404-55015423 | None:intergenic | 15.0% |
| !!! | TGAAGTATAATTTAATTTCT+AGG | - | chr4_1:55016451-55016470 | Msa0556750:CDS | 15.0% |
| !!! | GAAGTATAATTTAATTTCTA+GGG | - | chr4_1:55016452-55016471 | Msa0556750:CDS | 15.0% |
| !!! | AAATTTCTTTTTTATGTATC+AGG | - | chr4_1:55016504-55016523 | Msa0556750:intron | 15.0% |
| !! | AGAAAATAACAAATATGATA+GGG | + | chr4_1:55018017-55018036 | None:intergenic | 15.0% |
| !! | TAGAAAATAACAAATATGAT+AGG | + | chr4_1:55018018-55018037 | None:intergenic | 15.0% |
| !!! | TCATATTTGTTATTTTCTAT+TGG | - | chr4_1:55018019-55018038 | Msa0556750:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTGTAACG+AGG | + | chr4_1:55018253-55018272 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAATCTTATGGA+TGG | - | chr4_1:55018267-55018286 | Msa0556750:CDS | 15.0% |
| !! | TATGAAAATAACAGAATATA+AGG | + | chr4_1:55018319-55018338 | None:intergenic | 15.0% |
| !! | TCTTAAGAGTAAAAAATATA+AGG | + | chr4_1:55018352-55018371 | None:intergenic | 15.0% |
| !! | ATATCAAAAAAAATGACAAA+CGG | + | chr4_1:55018634-55018653 | None:intergenic | 15.0% |
| !! | AATTTGGTTATTCTGTAATA+GGG | - | chr4_1:55013737-55013756 | Msa0556750:CDS | 20.0% |
| !!! | AATTTGTTTTTTATTGCTTC+TGG | - | chr4_1:55014055-55014074 | Msa0556750:intron | 20.0% |
| !!! | ACAATCATTTTTTCTTGTTA+CGG | - | chr4_1:55014311-55014330 | Msa0556750:intron | 20.0% |
| !!! | TTTGTTGTTGTTTTAAGTTT+GGG | + | chr4_1:55015967-55015986 | None:intergenic | 20.0% |
| !!! | TTTTGTTGTTGTTTTAAGTT+TGG | + | chr4_1:55015968-55015987 | None:intergenic | 20.0% |
| !!! | TAGTTTATTTTTCATTTGTG+TGG | - | chr4_1:55016026-55016045 | Msa0556750:intron | 20.0% |
| !!! | AGTTTATTTTTCATTTGTGT+GGG | - | chr4_1:55016027-55016046 | Msa0556750:intron | 20.0% |
| !!! | AAAATAGATATTTTAGTTGC+AGG | - | chr4_1:55016232-55016251 | Msa0556750:CDS | 20.0% |
| !!! | AAATAGATATTTTAGTTGCA+GGG | - | chr4_1:55016233-55016252 | Msa0556750:CDS | 20.0% |
| !!! | CTTTTGAATTTTGTTGTTTT+AGG | + | chr4_1:55016297-55016316 | None:intergenic | 20.0% |
| !!! | TTTTAATATCAATTACGATG+AGG | - | chr4_1:55016361-55016380 | Msa0556750:CDS | 20.0% |
| !!! | TTTTTTATGTATCAGGTTAT+TGG | - | chr4_1:55016511-55016530 | Msa0556750:intron | 20.0% |
| !! | AAAAATTATGATATTGGACT+TGG | + | chr4_1:55016604-55016623 | None:intergenic | 20.0% |
| !!! | TATTTTCATTAATGTGCTAT+AGG | - | chr4_1:55017135-55017154 | Msa0556750:intron | 20.0% |
| !!! | ATTTTCATTAATGTGCTATA+GGG | - | chr4_1:55017136-55017155 | Msa0556750:intron | 20.0% |
| !! | AACATATTAAAGCATAATGA+AGG | - | chr4_1:55017687-55017706 | Msa0556750:intron | 20.0% |
| !! | ACATATTAAAGCATAATGAA+GGG | - | chr4_1:55017688-55017707 | Msa0556750:intron | 20.0% |
| !! | ACCATATTAGAACATTATTA+AGG | - | chr4_1:55017822-55017841 | Msa0556750:intron | 20.0% |
| !! | CCATATTAGAACATTATTAA+GGG | - | chr4_1:55017823-55017842 | Msa0556750:intron | 20.0% |
| !! | CTGCAATATATTAAAATTGT+GGG | + | chr4_1:55018429-55018448 | None:intergenic | 20.0% |
| !! | AAACGTGTAAAATTATTTCA+TGG | + | chr4_1:55018539-55018558 | None:intergenic | 20.0% |
| !!! | AAATAATTTTACACGTTTCA+GGG | - | chr4_1:55018541-55018560 | Msa0556750:CDS | 20.0% |
| !! | TATCAAAAAAAATGACAAAC+GGG | + | chr4_1:55018633-55018652 | None:intergenic | 20.0% |
| !!! | ACTTTTTGATGTATTATGAA+TGG | - | chr4_1:55018762-55018781 | Msa0556750:five_prime_UTR | 20.0% |
| !! | TGTTCTTGGTTAAAAAATAA+TGG | - | chr4_1:55018822-55018841 | Msa0556750:intron | 20.0% |
| ! | TTCTATTAGTCCTAAAATTG+TGG | + | chr4_1:55013149-55013168 | None:intergenic | 25.0% |
| ! | AGGACTAATAGAATAGAAAA+AGG | - | chr4_1:55013156-55013175 | Msa0556750:three_prime_UTR | 25.0% |
| !!! | AAAAGTCAATGAGTTGATTA+AGG | + | chr4_1:55013314-55013333 | None:intergenic | 25.0% |
| !! | TTTTCCTTTTCCTTTCAATT+TGG | - | chr4_1:55013721-55013740 | Msa0556750:CDS | 25.0% |
| ! | ATAACCAAATTGAAAGGAAA+AGG | + | chr4_1:55013728-55013747 | None:intergenic | 25.0% |
| ! | TACAGAATAACCAAATTGAA+AGG | + | chr4_1:55013734-55013753 | None:intergenic | 25.0% |
| ! | CAATTTGGTTATTCTGTAAT+AGG | - | chr4_1:55013736-55013755 | Msa0556750:CDS | 25.0% |
| ! | ATGTTTATTGTGAGATTGTA+TGG | - | chr4_1:55013761-55013780 | Msa0556750:CDS | 25.0% |
| ! | TGTTTATTGTGAGATTGTAT+GGG | - | chr4_1:55013762-55013781 | Msa0556750:CDS | 25.0% |
| ! | CTCTTATATACAAACTTATG+TGG | + | chr4_1:55013921-55013940 | None:intergenic | 25.0% |
| ! | CACATAAGTTTGTATATAAG+AGG | - | chr4_1:55013919-55013938 | Msa0556750:intron | 25.0% |
| !!! | TTGTTCATTTTAATGTCCTT+TGG | - | chr4_1:55014097-55014116 | Msa0556750:intron | 25.0% |
| ! | AGTAATTAACAATTCACACA+GGG | + | chr4_1:55014256-55014275 | None:intergenic | 25.0% |
| ! | AAGTAATTAACAATTCACAC+AGG | + | chr4_1:55014257-55014276 | None:intergenic | 25.0% |
| ! | TATTATAGGGAAGAAAAAGT+GGG | - | chr4_1:55014565-55014584 | Msa0556750:intron | 25.0% |
| ! | TAAATTGTTGTATTATCACC+TGG | - | chr4_1:55014606-55014625 | Msa0556750:intron | 25.0% |
| ! | TAGAAACTACAACTTACTTT+AGG | - | chr4_1:55014657-55014676 | Msa0556750:intron | 25.0% |
| ! | TCTCTTATAATTGAATCACA+TGG | + | chr4_1:55015001-55015020 | None:intergenic | 25.0% |
| ! | TGATTCAATTATAAGAGAGA+AGG | - | chr4_1:55015003-55015022 | Msa0556750:intron | 25.0% |
| ! | AATTATAAGAGAGAAGGAAT+GGG | - | chr4_1:55015009-55015028 | Msa0556750:intron | 25.0% |
| !! | TAATTCTTAGTGAGTTTGTT+AGG | - | chr4_1:55015052-55015071 | Msa0556750:intron | 25.0% |
| ! | GTGTATTATTTATATGGGAA+AGG | + | chr4_1:55015156-55015175 | None:intergenic | 25.0% |
| ! | AAAGAACAATGTAGACTTAA+TGG | - | chr4_1:55015302-55015321 | Msa0556750:intron | 25.0% |
| ! | AAGAACAATGTAGACTTAAT+GGG | - | chr4_1:55015303-55015322 | Msa0556750:intron | 25.0% |
| !!! | ATTCTTAGTTAACTTGTTTC+TGG | - | chr4_1:55015412-55015431 | Msa0556750:intron | 25.0% |
| !!! | GCTGATTTTTTCAATTACAT+GGG | + | chr4_1:55015758-55015777 | None:intergenic | 25.0% |
| !!! | TGCTGATTTTTTCAATTACA+TGG | + | chr4_1:55015759-55015778 | None:intergenic | 25.0% |
| !!! | TTGTTGTTGTTTTAAGTTTG+GGG | + | chr4_1:55015966-55015985 | None:intergenic | 25.0% |
| ! | TGAAAAATAAACTAGTGACT+TGG | + | chr4_1:55016020-55016039 | None:intergenic | 25.0% |
| !!! | GTTTATTTTTCATTTGTGTG+GGG | - | chr4_1:55016028-55016047 | Msa0556750:intron | 25.0% |
| ! | ACAAATAAACTAAATGCCTA+AGG | + | chr4_1:55016064-55016083 | None:intergenic | 25.0% |
| !! | ACAACAAAATTCAAAAGTAC+AGG | - | chr4_1:55016300-55016319 | Msa0556750:CDS | 25.0% |
| !! | GAAACTTATTATTTCTTACC+TGG | + | chr4_1:55016577-55016596 | None:intergenic | 25.0% |
| !! | AGAAAATGCCAATATTTTCT+TGG | - | chr4_1:55017179-55017198 | Msa0556750:intron | 25.0% |
| ! | TTATTTGAGTAAGTGCATAT+CGG | - | chr4_1:55017270-55017289 | Msa0556750:intron | 25.0% |
| ! | CCCTTAATAATGTTCTAATA+TGG | + | chr4_1:55017826-55017845 | None:intergenic | 25.0% |
| ! | ATCAAATTGTATGGAATGTT+TGG | + | chr4_1:55017963-55017982 | None:intergenic | 25.0% |
| ! | AACAAATATGATAGGGATTT+GGG | + | chr4_1:55018010-55018029 | None:intergenic | 25.0% |
| ! | TAACAAATATGATAGGGATT+TGG | + | chr4_1:55018011-55018030 | None:intergenic | 25.0% |
| ! | AAAAAAATCTTATGGATGGA+TGG | - | chr4_1:55018271-55018290 | Msa0556750:CDS | 25.0% |
| ! | GAAAATAACAGAATATAAGG+CGG | + | chr4_1:55018316-55018335 | None:intergenic | 25.0% |
| ! | CCTGCAATATATTAAAATTG+TGG | + | chr4_1:55018430-55018449 | None:intergenic | 25.0% |
| !!! | CCACAATTTTAATATATTGC+AGG | - | chr4_1:55018427-55018446 | Msa0556750:CDS | 25.0% |
| !! | GAAATAATTTTACACGTTTC+AGG | - | chr4_1:55018540-55018559 | Msa0556750:CDS | 25.0% |
| ATGAGCTGAAGCAAAAAAAA+TGG | + | chr4_1:55013580-55013599 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTGCTTCAGCTCAT+AGG | - | chr4_1:55013580-55013599 | Msa0556750:intron | 30.0% |
| ATGCTATTCAGATAAACCAT+TGG | + | chr4_1:55013613-55013632 | None:intergenic | 30.0% | |
| AAAAAACAAATTACCTTCCC+AGG | + | chr4_1:55014047-55014066 | None:intergenic | 30.0% | |
| CACTATCTAATATCTACCAA+AGG | + | chr4_1:55014116-55014135 | None:intergenic | 30.0% | |
| CTTAACACAGTTTCTGTATA+TGG | - | chr4_1:55014153-55014172 | Msa0556750:intron | 30.0% | |
| ! | AACCTATAATATGAAGGTGT+AGG | + | chr4_1:55014216-55014235 | None:intergenic | 30.0% |
| CTATTATAGGGAAGAAAAAG+TGG | - | chr4_1:55014564-55014583 | Msa0556750:intron | 30.0% | |
| ! | ACAACTTACTTTAGGCATTT+TGG | - | chr4_1:55014665-55014684 | Msa0556750:intron | 30.0% |
| ! | AGGATTTTTACAACCACATT+GGG | - | chr4_1:55014847-55014866 | Msa0556750:intron | 30.0% |
| CAATTATAAGAGAGAAGGAA+TGG | - | chr4_1:55015008-55015027 | Msa0556750:intron | 30.0% | |
| ATCTATGTGTGAGCATTATA+TGG | - | chr4_1:55015269-55015288 | Msa0556750:intron | 30.0% | |
| ! | TGAGCATTATATGGTTCTTT+TGG | - | chr4_1:55015278-55015297 | Msa0556750:intron | 30.0% |
| ! | CTTTTCTTGCAGATTAATTG+TGG | - | chr4_1:55015351-55015370 | Msa0556750:intron | 30.0% |
| ! | TACGCTGATATGCTTTTATA+TGG | + | chr4_1:55015904-55015923 | None:intergenic | 30.0% |
| !!! | TGTTGTTGTTTTAAGTTTGG+GGG | + | chr4_1:55015965-55015984 | None:intergenic | 30.0% |
| !!! | AGATACATTTTGAGACAACT+GGG | - | chr4_1:55016182-55016201 | Msa0556750:intron | 30.0% |
| TACAGGTAAATCATTCTCAA+TGG | - | chr4_1:55016317-55016336 | Msa0556750:CDS | 30.0% | |
| TTGATATTAAAAGACACCCA+TGG | + | chr4_1:55016353-55016372 | None:intergenic | 30.0% | |
| GGTAATATCTGCTTAATACT+TGG | - | chr4_1:55016382-55016401 | Msa0556750:CDS | 30.0% | |
| !! | TGCTTAATACTTGGTGTAAA+TGG | - | chr4_1:55016391-55016410 | Msa0556750:CDS | 30.0% |
| ! | ATTTTTAATGGAAACCGACA+AGG | + | chr4_1:55016488-55016507 | None:intergenic | 30.0% |
| GAAGATATTCTCTAATGTGT+GGG | + | chr4_1:55016895-55016914 | None:intergenic | 30.0% | |
| ! | CATCGAAGTTTTCTAAATTC+TGG | - | chr4_1:55017049-55017068 | Msa0556750:intron | 30.0% |
| ACTGAAACTAACTTCAAATG+TGG | + | chr4_1:55017111-55017130 | None:intergenic | 30.0% | |
| ! | TTGGCATTTTCTATTTATCC+TGG | + | chr4_1:55017171-55017190 | None:intergenic | 30.0% |
| AGTACAGACCAAGAAAATAT+TGG | + | chr4_1:55017190-55017209 | None:intergenic | 30.0% | |
| AAGTCAGTTTAACTGATACA+AGG | - | chr4_1:55017415-55017434 | Msa0556750:intron | 30.0% | |
| TTGATATTATCCAAGCACTT+GGG | - | chr4_1:55017740-55017759 | Msa0556750:intron | 30.0% | |
| GCATAAGAACTTTCATATCT+TGG | - | chr4_1:55017845-55017864 | Msa0556750:intron | 30.0% | |
| GTTAATAAGTATCCAAGCAA+TGG | - | chr4_1:55017873-55017892 | Msa0556750:intron | 30.0% | |
| AAATTGTATGGAATGTTTGG+TGG | + | chr4_1:55017960-55017979 | None:intergenic | 30.0% | |
| ACAAATATGATAGGGATTTG+GGG | + | chr4_1:55018009-55018028 | None:intergenic | 30.0% | |
| ACATAGGTGAAATCTTCATT+TGG | + | chr4_1:55018093-55018112 | None:intergenic | 30.0% | |
| AATGAAGATTTCACCTATGT+TGG | - | chr4_1:55018093-55018112 | Msa0556750:intron | 30.0% | |
| AAAATGAGGGAAAGCTTATT+GGG | - | chr4_1:55018215-55018234 | Msa0556750:intron | 30.0% | |
| AATATCTTTCACCAAAGCTT+GGG | + | chr4_1:55018460-55018479 | None:intergenic | 30.0% | |
| AAATATCTTTCACCAAAGCT+TGG | + | chr4_1:55018461-55018480 | None:intergenic | 30.0% | |
| !! | AATTTTCTGGAAAAGAACAG+TGG | + | chr4_1:55018486-55018505 | None:intergenic | 30.0% |
| GTAAAATTATTTCATGGCTC+CGG | + | chr4_1:55018533-55018552 | None:intergenic | 30.0% | |
| CAAATTCTGCATAATGTTCT+TGG | - | chr4_1:55018808-55018827 | Msa0556750:intron | 30.0% | |
| ! | AGTCCACAATCCACAATTTT+AGG | - | chr4_1:55013136-55013155 | Msa0556750:three_prime_UTR | 35.0% |
| ! | AGTCCTAAAATTGTGGATTG+TGG | + | chr4_1:55013142-55013161 | None:intergenic | 35.0% |
| !! | CAATGAGTTGATTAAGGAAG+TGG | + | chr4_1:55013308-55013327 | None:intergenic | 35.0% |
| TTATCTGAATAGCATCGCAA+AGG | - | chr4_1:55013618-55013637 | Msa0556750:intron | 35.0% | |
| TATCTGAATAGCATCGCAAA+GGG | - | chr4_1:55013619-55013638 | Msa0556750:intron | 35.0% | |
| CTTAGCAGCAATATTAGCAA+CGG | + | chr4_1:55013647-55013666 | None:intergenic | 35.0% | |
| TCAAGCTGTTTATCCAAACA+GGG | - | chr4_1:55013882-55013901 | Msa0556750:intron | 35.0% | |
| ! | TGTTTATCCAAACAGGGTTT+TGG | - | chr4_1:55013888-55013907 | Msa0556750:intron | 35.0% |
| ACATATACCAAAACCCTGTT+TGG | + | chr4_1:55013898-55013917 | None:intergenic | 35.0% | |
| !!! | CTTTTGATTTGTTCTCTTGC+AGG | - | chr4_1:55013973-55013992 | Msa0556750:intron | 35.0% |
| ATACTTGATGCTGAGAAGAA+AGG | - | chr4_1:55014011-55014030 | Msa0556750:intron | 35.0% | |
| ACTGGGAACCTATAATATGA+AGG | + | chr4_1:55014222-55014241 | None:intergenic | 35.0% | |
| !! | ATAAGGAATTTTAGCGTTGC+AGG | - | chr4_1:55014501-55014520 | Msa0556750:intron | 35.0% |
| ! | ATAGAATGTGTTAGTTGGTG+AGG | - | chr4_1:55014819-55014838 | Msa0556750:intron | 35.0% |
| ! | GAGGATTTTTACAACCACAT+TGG | - | chr4_1:55014846-55014865 | Msa0556750:intron | 35.0% |
| AGAGAATATCTCTCTTGTAC+TGG | - | chr4_1:55015075-55015094 | Msa0556750:intron | 35.0% | |
| ! | AATATCTCTCTTGTACTGGT+AGG | - | chr4_1:55015079-55015098 | Msa0556750:intron | 35.0% |
| TCTATCACACTCTTTGCTTT+AGG | - | chr4_1:55015201-55015220 | Msa0556750:CDS | 35.0% | |
| ! | ACCTTTAGAAGCTGCTATAA+AGG | + | chr4_1:55015496-55015515 | None:intergenic | 35.0% |
| !!! | CGAGTTCTTTTGAAAGCATT+TGG | - | chr4_1:55015561-55015580 | Msa0556750:intron | 35.0% |
| ! | TTTTATATGGTGCCTTTAGC+AGG | + | chr4_1:55015891-55015910 | None:intergenic | 35.0% |
| !! | ACTAGTGACTTGGTATGTTT+GGG | + | chr4_1:55016010-55016029 | None:intergenic | 35.0% |
| !! | AACTAGTGACTTGGTATGTT+TGG | + | chr4_1:55016011-55016030 | None:intergenic | 35.0% |
| TGAACTCAACTGAATGCAAA+GGG | + | chr4_1:55016092-55016111 | None:intergenic | 35.0% | |
| TTGAACTCAACTGAATGCAA+AGG | + | chr4_1:55016093-55016112 | None:intergenic | 35.0% | |
| TTCAGTTGAGTTCAAGATGA+TGG | - | chr4_1:55016098-55016117 | Msa0556750:intron | 35.0% | |
| ATAGAGTTCTACTTCTAACG+TGG | - | chr4_1:55016132-55016151 | Msa0556750:intron | 35.0% | |
| !!! | CAGATACATTTTGAGACAAC+TGG | - | chr4_1:55016181-55016200 | Msa0556750:intron | 35.0% |
| !!! | GATATTTTAGTTGCAGGGAT+TGG | - | chr4_1:55016238-55016257 | Msa0556750:CDS | 35.0% |
| !!! | TTGTTGTTTTAGGAATCGAC+CGG | + | chr4_1:55016287-55016306 | None:intergenic | 35.0% |
| GATCTTTGTACTCCATATAC+TGG | - | chr4_1:55016413-55016432 | Msa0556750:CDS | 35.0% | |
| GATAAGACATGACCAGTATA+TGG | + | chr4_1:55016428-55016447 | None:intergenic | 35.0% | |
| ! | CTCACAAAATTCAGGGTATT+GGG | - | chr4_1:55016677-55016696 | Msa0556750:intron | 35.0% |
| !! | TCACAAAATTCAGGGTATTG+GGG | - | chr4_1:55016678-55016697 | Msa0556750:intron | 35.0% |
| ACTTCTTCATCCAAATTCCT+GGG | + | chr4_1:55016715-55016734 | None:intergenic | 35.0% | |
| AGTGCTTGATGAAGTTATAG+CGG | - | chr4_1:55016732-55016751 | Msa0556750:intron | 35.0% | |
| GGAAGATATTCTCTAATGTG+TGG | + | chr4_1:55016896-55016915 | None:intergenic | 35.0% | |
| ATATCTTCCGTTGACAAGAA+TGG | - | chr4_1:55016907-55016926 | Msa0556750:intron | 35.0% | |
| AACTGAAACCTATGTCTTCA+TGG | + | chr4_1:55016945-55016964 | None:intergenic | 35.0% | |
| GCAATGCTTATAGAGGTAAA+AGG | + | chr4_1:55016975-55016994 | None:intergenic | 35.0% | |
| AACAAGATAGTGTGTATGTG+CGG | + | chr4_1:55017007-55017026 | None:intergenic | 35.0% | |
| ! | CGAAGTTTTCTAAATTCTGG+TGG | - | chr4_1:55017052-55017071 | Msa0556750:intron | 35.0% |
| ! | TACTTGTTAGAACTCAACAG+AGG | - | chr4_1:55017206-55017225 | Msa0556750:intron | 35.0% |
| ! | ACTTGTTAGAACTCAACAGA+GGG | - | chr4_1:55017207-55017226 | Msa0556750:intron | 35.0% |
| CTTATTGTACTCGAGTTAGT+TGG | + | chr4_1:55017342-55017361 | None:intergenic | 35.0% | |
| AATTAACTCCCGTCTTGATT+TGG | - | chr4_1:55017470-55017489 | Msa0556750:intron | 35.0% | |
| AGTTTCAATAGCTTCATCAC+TGG | + | chr4_1:55017503-55017522 | None:intergenic | 35.0% | |
| TACAAAGCAAATAGCACTTC+AGG | - | chr4_1:55017522-55017541 | Msa0556750:intron | 35.0% | |
| AAAAATGCAAGTCAGGCAAA+TGG | + | chr4_1:55017586-55017605 | None:intergenic | 35.0% | |
| CACGTTAAAAAATGCAAGTC+AGG | + | chr4_1:55017593-55017612 | None:intergenic | 35.0% | |
| GTTGATATTATCCAAGCACT+TGG | - | chr4_1:55017739-55017758 | Msa0556750:intron | 35.0% | |
| TGATATTATCCAAGCACTTG+GGG | - | chr4_1:55017741-55017760 | Msa0556750:intron | 35.0% | |
| ! | ATTGTTACGCGCTACTTTAA+GGG | + | chr4_1:55017782-55017801 | None:intergenic | 35.0% |
| ! | TGTTTGGTGGAGTATTTAAC+TGG | + | chr4_1:55017947-55017966 | None:intergenic | 35.0% |
| CATTCCATACAATTTGATGC+AGG | - | chr4_1:55017965-55017984 | Msa0556750:intron | 35.0% | |
| AAGTCCTGCATCAAATTGTA+TGG | + | chr4_1:55017972-55017991 | None:intergenic | 35.0% | |
| TCAGAGTATAAAGCCAACAT+AGG | + | chr4_1:55018109-55018128 | None:intergenic | 35.0% | |
| TTTCCAATGGTATGAAGGTA+AGG | + | chr4_1:55018133-55018152 | None:intergenic | 35.0% | |
| ! | ATAAGCTTTCCCTCATTTTC+AGG | + | chr4_1:55018214-55018233 | None:intergenic | 35.0% |
| GAAAATGAGGGAAAGCTTAT+TGG | - | chr4_1:55018214-55018233 | Msa0556750:intron | 35.0% | |
| AAATGAGGGAAAGCTTATTG+GGG | - | chr4_1:55018216-55018235 | Msa0556750:intron | 35.0% | |
| ! | CACATTCTTCTCGAATTTTC+TGG | + | chr4_1:55018499-55018518 | None:intergenic | 35.0% |
| GAAATTAGAAGCTTCTGAAC+TGG | - | chr4_1:55018658-55018677 | Msa0556750:five_prime_UTR | 35.0% | |
| TTAAACATGCCACTGATCAA+CGG | - | chr4_1:55018691-55018710 | Msa0556750:five_prime_UTR | 35.0% | |
| ATATCAAGTATCTCCACGAG+AGG | + | chr4_1:55013111-55013130 | None:intergenic | 40.0% | |
| ! | TCAGACCACAGGGAAATTTT+GGG | + | chr4_1:55013268-55013287 | None:intergenic | 40.0% |
| ! | TTCAGACCACAGGGAAATTT+TGG | + | chr4_1:55013269-55013288 | None:intergenic | 40.0% |
| GGTTAAGTAGTGAAAAGTGG+GGG | + | chr4_1:55013347-55013366 | None:intergenic | 40.0% | |
| GGGTTAAGTAGTGAAAAGTG+GGG | + | chr4_1:55013348-55013367 | None:intergenic | 40.0% | |
| CGGGTTAAGTAGTGAAAAGT+GGG | + | chr4_1:55013349-55013368 | None:intergenic | 40.0% | |
| ! | AATGGTGGTTTGGGAATTGA+CGG | + | chr4_1:55013461-55013480 | None:intergenic | 40.0% |
| AATTCCCAAACCACCATTGA+AGG | - | chr4_1:55013463-55013482 | Msa0556750:CDS | 40.0% | |
| AATGTTGAGACCTTCAATGG+TGG | + | chr4_1:55013476-55013495 | None:intergenic | 40.0% | |
| ACGAACCTGAGTAACATCTT+CGG | + | chr4_1:55013500-55013519 | None:intergenic | 40.0% | |
| GCTCATAGGAAAAACACCAA+TGG | - | chr4_1:55013594-55013613 | Msa0556750:intron | 40.0% | |
| TGCTGCTAAGCTTGAGATTA+TGG | - | chr4_1:55013657-55013676 | Msa0556750:intron | 40.0% | |
| CTGTCTTTGACACTACAACA+AGG | + | chr4_1:55013685-55013704 | None:intergenic | 40.0% | |
| ! | CTTGTTGTAGTGTCAAAGAC+AGG | - | chr4_1:55013683-55013702 | Msa0556750:intron | 40.0% |
| GTCAAGCTGTTTATCCAAAC+AGG | - | chr4_1:55013881-55013900 | Msa0556750:intron | 40.0% | |
| ! | GATTTGTTCTCTTGCAGGAT+AGG | - | chr4_1:55013978-55013997 | Msa0556750:intron | 40.0% |
| AATTACCTTCCCAGGTGTTA+TGG | + | chr4_1:55014039-55014058 | None:intergenic | 40.0% | |
| CGCCTACACCTTCATATTAT+AGG | - | chr4_1:55014211-55014230 | Msa0556750:intron | 40.0% | |
| !! | ACAGGGATTAGTCGAAAACT+GGG | + | chr4_1:55014239-55014258 | None:intergenic | 40.0% |
| CGGCAAAGTTCTCTTAAACA+AGG | - | chr4_1:55014331-55014350 | Msa0556750:intron | 40.0% | |
| ! | GATGGTGCTAACTGCATATA+AGG | - | chr4_1:55014484-55014503 | Msa0556750:intron | 40.0% |
| TGACCTAATCCGAGTTTAAG+CGG | - | chr4_1:55014532-55014551 | Msa0556750:intron | 40.0% | |
| AAAGTGGGACGTGTGAATAT+TGG | - | chr4_1:55014580-55014599 | Msa0556750:intron | 40.0% | |
| CTATCAGTAGATAACATGCC+AGG | + | chr4_1:55014627-55014646 | None:intergenic | 40.0% | |
| CAAGTGTCCTATCACTCTAT+CGG | + | chr4_1:55014702-55014721 | None:intergenic | 40.0% | |
| GATAGAGTGATAGGACACTT+GGG | - | chr4_1:55014701-55014720 | Msa0556750:intron | 40.0% | |
| AGGTCTAGACTAGGAAAAAG+AGG | - | chr4_1:55014782-55014801 | Msa0556750:intron | 40.0% | |
| GGTCTAGACTAGGAAAAAGA+GGG | - | chr4_1:55014783-55014802 | Msa0556750:intron | 40.0% | |
| TAGACTAGGAAAAAGAGGGT+GGG | - | chr4_1:55014787-55014806 | Msa0556750:intron | 40.0% | |
| GGAGGATAGAATGTGTTAGT+TGG | - | chr4_1:55014814-55014833 | Msa0556750:intron | 40.0% | |
| AACCATGATGAGCCAATCAT+TGG | - | chr4_1:55014876-55014895 | Msa0556750:intron | 40.0% | |
| ACCATGATGAGCCAATCATT+GGG | - | chr4_1:55014877-55014896 | Msa0556750:intron | 40.0% | |
| ! | ATAGAATGTGTCAGTTGGTG+AGG | - | chr4_1:55014963-55014982 | Msa0556750:intron | 40.0% |
| TAATGCTCACACATAGATGC+AGG | + | chr4_1:55015267-55015286 | None:intergenic | 40.0% | |
| !! | GTATGCACTTCAGAGTGTTT+TGG | - | chr4_1:55015434-55015453 | Msa0556750:intron | 40.0% |
| ! | TTTTGGTGGAACCTACTAGT+GGG | - | chr4_1:55015451-55015470 | Msa0556750:intron | 40.0% |
| GCCTTTATAGCAGCTTCTAA+AGG | - | chr4_1:55015492-55015511 | Msa0556750:intron | 40.0% | |
| AACTCGTCTTTCCAAACTCA+TGG | + | chr4_1:55015547-55015566 | None:intergenic | 40.0% | |
| TGTTGAAGCATGTATGCATC+AGG | + | chr4_1:55015666-55015685 | None:intergenic | 40.0% | |
| TGACAATCCTTCAAATCCCA+AGG | - | chr4_1:55015689-55015708 | Msa0556750:CDS | 40.0% | |
| CCTTCAAATCCCAAGGTAAA+CGG | - | chr4_1:55015696-55015715 | Msa0556750:CDS | 40.0% | |
| ! | TAGATGTTGCCGTTTACCTT+GGG | + | chr4_1:55015708-55015727 | None:intergenic | 40.0% |
| ! | TTAGATGTTGCCGTTTACCT+TGG | + | chr4_1:55015709-55015728 | None:intergenic | 40.0% |
| AAAACCCATGCTTCAAACAG+AGG | - | chr4_1:55015809-55015828 | Msa0556750:intron | 40.0% | |
| AAACAGAGGTCACAAAGTCT+AGG | - | chr4_1:55015823-55015842 | Msa0556750:intron | 40.0% | |
| AGAAAATGGAGGACCAAATG+GGG | + | chr4_1:55015934-55015953 | None:intergenic | 40.0% | |
| CAGAAAATGGAGGACCAAAT+GGG | + | chr4_1:55015935-55015954 | None:intergenic | 40.0% | |
| TCAGAAAATGGAGGACCAAA+TGG | + | chr4_1:55015936-55015955 | None:intergenic | 40.0% | |
| !! | CTAGTGACTTGGTATGTTTG+GGG | + | chr4_1:55016009-55016028 | None:intergenic | 40.0% |
| !!! | GTGGGGAATTTTAGTTCCTT+AGG | - | chr4_1:55016045-55016064 | Msa0556750:intron | 40.0% |
| GAACTCAACTGAATGCAAAG+GGG | + | chr4_1:55016091-55016110 | None:intergenic | 40.0% | |
| AACGTGGTGAACTGCAAATT+TGG | - | chr4_1:55016148-55016167 | Msa0556750:intron | 40.0% | |
| CTTGTATCTTCCCATATCTC+TGG | + | chr4_1:55016208-55016227 | None:intergenic | 40.0% | |
| GAGATATGGGAAGATACAAG+AGG | - | chr4_1:55016208-55016227 | Msa0556750:intron | 40.0% | |
| !! | GAAAGTATGTTGCTTTCGAG+AGG | + | chr4_1:55016544-55016563 | None:intergenic | 40.0% |
| CTCGAAAGCAACATACTTTC+AGG | - | chr4_1:55016544-55016563 | Msa0556750:intron | 40.0% | |
| GAAAGCAACATACTTTCAGG+TGG | - | chr4_1:55016547-55016566 | Msa0556750:intron | 40.0% | |
| CCTGTGGTTTAGCAGAAAAA+AGG | + | chr4_1:55016655-55016674 | None:intergenic | 40.0% | |
| !!! | CCTTTTTTCTGCTAAACCAC+AGG | - | chr4_1:55016652-55016671 | Msa0556750:intron | 40.0% |
| ACAGGACCTCACAAAATTCA+GGG | - | chr4_1:55016670-55016689 | Msa0556750:intron | 40.0% | |
| ! | CCAATACCCTGAATTTTGTG+AGG | + | chr4_1:55016679-55016698 | None:intergenic | 40.0% |
| CCTCACAAAATTCAGGGTAT+TGG | - | chr4_1:55016676-55016695 | Msa0556750:intron | 40.0% | |
| CACTTCTTCATCCAAATTCC+TGG | + | chr4_1:55016716-55016735 | None:intergenic | 40.0% | |
| TGCAAAGTCCATGAAGACAT+AGG | - | chr4_1:55016934-55016953 | Msa0556750:intron | 40.0% | |
| AGACATGGCAATGCTTATAG+AGG | + | chr4_1:55016982-55017001 | None:intergenic | 40.0% | |
| ! | AAATGTGGAGTACCACTCTT+GGG | + | chr4_1:55017096-55017115 | None:intergenic | 40.0% |
| AGTAAGTGCATATCGGATAC+AGG | - | chr4_1:55017277-55017296 | Msa0556750:intron | 40.0% | |
| GATATCTGCCAAATCAAGAC+GGG | + | chr4_1:55017481-55017500 | None:intergenic | 40.0% | |
| GGATATCTGCCAAATCAAGA+CGG | + | chr4_1:55017482-55017501 | None:intergenic | 40.0% | |
| AAGCAAATAGCACTTCAGGA+AGG | - | chr4_1:55017526-55017545 | Msa0556750:intron | 40.0% | |
| TGTGTAAGTGCGCATGATAT+GGG | + | chr4_1:55017624-55017643 | None:intergenic | 40.0% | |
| ! | GATTGTTACGCGCTACTTTA+AGG | + | chr4_1:55017783-55017802 | None:intergenic | 40.0% |
| ! | AGGGAAGATTTTCCATTGCT+TGG | + | chr4_1:55017888-55017907 | None:intergenic | 40.0% |
| GAAAATCTTCCCTCCCTTAA+AGG | - | chr4_1:55017895-55017914 | Msa0556750:CDS | 40.0% | |
| !! | CCTTGATAGTTGGCCTTTAA+GGG | + | chr4_1:55017911-55017930 | None:intergenic | 40.0% |
| CCTTAAAGGCCAACTATCAA+GGG | - | chr4_1:55017909-55017928 | Msa0556750:CDS | 40.0% | |
| CTTAAAGGCCAACTATCAAG+GGG | - | chr4_1:55017910-55017929 | Msa0556750:CDS | 40.0% | |
| TTAAAGGCCAACTATCAAGG+GGG | - | chr4_1:55017911-55017930 | Msa0556750:CDS | 40.0% | |
| ! | GGTGGAGTATTTAACTGGTT+TGG | + | chr4_1:55017942-55017961 | None:intergenic | 40.0% |
| GATAGGGATTTGGGGATTAT+GGG | + | chr4_1:55018001-55018020 | None:intergenic | 40.0% | |
| TGATAGGGATTTGGGGATTA+TGG | + | chr4_1:55018002-55018021 | None:intergenic | 40.0% | |
| GATCCTTACCTTCATACCAT+TGG | - | chr4_1:55018127-55018146 | Msa0556750:intron | 40.0% | |
| ! | CCTGTTTTCCAATGGTATGA+AGG | + | chr4_1:55018138-55018157 | None:intergenic | 40.0% |
| CCTTCATACCATTGGAAAAC+AGG | - | chr4_1:55018135-55018154 | Msa0556750:intron | 40.0% | |
| TCATACCATTGGAAAACAGG+TGG | - | chr4_1:55018138-55018157 | Msa0556750:intron | 40.0% | |
| CATACCATTGGAAAACAGGT+GGG | - | chr4_1:55018139-55018158 | Msa0556750:intron | 40.0% | |
| ! | AATTCCCACCTGTTTTCCAA+TGG | + | chr4_1:55018146-55018165 | None:intergenic | 40.0% |
| AAACAGGTGGGAATTTCTTC+AGG | - | chr4_1:55018151-55018170 | Msa0556750:intron | 40.0% | |
| AGAATGTGAGAACATGCAAC+CGG | - | chr4_1:55018511-55018530 | Msa0556750:CDS | 40.0% | |
| CCGGAAACTGTATTGTTGAA+GGG | + | chr4_1:55018717-55018736 | None:intergenic | 40.0% | |
| CCCTTCAACAATACAGTTTC+CGG | - | chr4_1:55018714-55018733 | Msa0556750:five_prime_UTR | 40.0% | |
| TCCGGAAACTGTATTGTTGA+AGG | + | chr4_1:55018718-55018737 | None:intergenic | 40.0% | |
| ! | TTCCGGATATCCTTGCATTT+TGG | - | chr4_1:55018731-55018750 | Msa0556750:five_prime_UTR | 40.0% |
| CTCCAAAATGCAAGGATATC+CGG | + | chr4_1:55018736-55018755 | None:intergenic | 40.0% | |
| ! | GGATATCCTTGCATTTTGGA+GGG | - | chr4_1:55018735-55018754 | Msa0556750:five_prime_UTR | 40.0% |
| CGTGGAGATACTTGATATCG+TGG | - | chr4_1:55013113-55013132 | Msa0556750:three_prime_UTR | 45.0% | |
| !! | TGTTGTTGGTTCAGACCACA+GGG | + | chr4_1:55013278-55013297 | None:intergenic | 45.0% |
| !! | TTGTTGTTGGTTCAGACCAC+AGG | + | chr4_1:55013279-55013298 | None:intergenic | 45.0% |
| GTGGTCTGAACCAACAACAA+TGG | - | chr4_1:55013279-55013298 | Msa0556750:three_prime_UTR | 45.0% | |
| GAAGTGGAAGCCATTGTTGT+TGG | + | chr4_1:55013292-55013311 | None:intergenic | 45.0% | |
| ! | GCGGGTTAAGTAGTGAAAAG+TGG | + | chr4_1:55013350-55013369 | None:intergenic | 45.0% |
| AGATTCTGGTGGAGATGGAA+CGG | + | chr4_1:55013411-55013430 | None:intergenic | 45.0% | |
| GAGACCTTCAATGGTGGTTT+GGG | + | chr4_1:55013470-55013489 | None:intergenic | 45.0% | |
| TGAGACCTTCAATGGTGGTT+TGG | + | chr4_1:55013471-55013490 | None:intergenic | 45.0% | |
| GGCAATGTTGAGACCTTCAA+TGG | + | chr4_1:55013479-55013498 | None:intergenic | 45.0% | |
| CATTGCCGAAGATGTTACTC+AGG | - | chr4_1:55013492-55013511 | Msa0556750:intron | 45.0% | |
| ! | AGATTGTATGGGAGCGTGTA+TGG | - | chr4_1:55013773-55013792 | Msa0556750:intron | 45.0% |
| AAGAAAGGAGCCATAACACC+TGG | - | chr4_1:55014026-55014045 | Msa0556750:intron | 45.0% | |
| AGAAAGGAGCCATAACACCT+GGG | - | chr4_1:55014027-55014046 | Msa0556750:intron | 45.0% | |
| !! | CACAGGGATTAGTCGAAAAC+TGG | + | chr4_1:55014240-55014259 | None:intergenic | 45.0% |
| AGAGATTCTGTTCACTGCAC+TGG | - | chr4_1:55014385-55014404 | Msa0556750:CDS | 45.0% | |
| ! | TAACCAAGCCTTTTCCCACT+AGG | - | chr4_1:55014457-55014476 | Msa0556750:intron | 45.0% |
| GACCTAATCCGAGTTTAAGC+GGG | - | chr4_1:55014533-55014552 | Msa0556750:intron | 45.0% | |
| ACCTAATCCGAGTTTAAGCG+GGG | - | chr4_1:55014534-55014553 | Msa0556750:intron | 45.0% | |
| CGGGGTCTGTGACTATTATA+GGG | - | chr4_1:55014552-55014571 | Msa0556750:intron | 45.0% | |
| CGATAGAGTGATAGGACACT+TGG | - | chr4_1:55014700-55014719 | Msa0556750:intron | 45.0% | |
| CTAGACTAGGAAAAAGAGGG+TGG | - | chr4_1:55014786-55014805 | Msa0556750:intron | 45.0% | |
| AGACTAGGAAAAAGAGGGTG+GGG | - | chr4_1:55014788-55014807 | Msa0556750:intron | 45.0% | |
| !! | ATGTGTTAGTTGGTGAGGTC+AGG | - | chr4_1:55014824-55014843 | Msa0556750:intron | 45.0% |
| ! | ATTGGCTCATCATGGTTGTC+AGG | + | chr4_1:55014873-55014892 | None:intergenic | 45.0% |
| CCATGATGAGCCAATCATTG+GGG | - | chr4_1:55014878-55014897 | Msa0556750:intron | 45.0% | |
| ! | ATGTGGTTTGCCCCAATGAT+TGG | + | chr4_1:55014891-55014910 | None:intergenic | 45.0% |
| ATCATTGGGGCAAACCACAT+AGG | - | chr4_1:55014891-55014910 | Msa0556750:intron | 45.0% | |
| GTCTAGACCTTCCAAATGGT+GGG | + | chr4_1:55014917-55014936 | None:intergenic | 45.0% | |
| AGTCTAGACCTTCCAAATGG+TGG | + | chr4_1:55014918-55014937 | None:intergenic | 45.0% | |
| CCTAGTCTAGACCTTCCAAA+TGG | + | chr4_1:55014921-55014940 | None:intergenic | 45.0% | |
| CCATTTGGAAGGTCTAGACT+AGG | - | chr4_1:55014918-55014937 | Msa0556750:intron | 45.0% | |
| AGGTCTAGACTAGGAGAAAG+AGG | - | chr4_1:55014927-55014946 | Msa0556750:intron | 45.0% | |
| GGTCTAGACTAGGAGAAAGA+GGG | - | chr4_1:55014928-55014947 | Msa0556750:intron | 45.0% | |
| TAGACTAGGAGAAAGAGGGT+GGG | - | chr4_1:55014932-55014951 | Msa0556750:intron | 45.0% | |
| GGAGGATAGAATGTGTCAGT+TGG | - | chr4_1:55014958-55014977 | Msa0556750:intron | 45.0% | |
| AAGAGAGAAGGAATGGGTAG+TGG | - | chr4_1:55015015-55015034 | Msa0556750:intron | 45.0% | |
| TGGGATCACAAATCCAGAGT+CGG | + | chr4_1:55015110-55015129 | None:intergenic | 45.0% | |
| TTCAGAGGCTCTACAGCTAT+GGG | + | chr4_1:55015129-55015148 | None:intergenic | 45.0% | |
| TATGGGAAAGGTGAGTTCAG+AGG | + | chr4_1:55015144-55015163 | None:intergenic | 45.0% | |
| !! | TGCACTTCAGAGTGTTTTGG+TGG | - | chr4_1:55015437-55015456 | Msa0556750:intron | 45.0% |
| !! | GTTTTGGTGGAACCTACTAG+TGG | - | chr4_1:55015450-55015469 | Msa0556750:intron | 45.0% |
| ATTCCTGTGTTCCCACTAGT+AGG | + | chr4_1:55015465-55015484 | None:intergenic | 45.0% | |
| ACTAGTGGGAACACAGGAAT+TGG | - | chr4_1:55015465-55015484 | Msa0556750:intron | 45.0% | |
| AATGCCTGCTTCCATGAGTT+TGG | - | chr4_1:55015533-55015552 | Msa0556750:intron | 45.0% | |
| CTTTCCAAACTCATGGAAGC+AGG | + | chr4_1:55015540-55015559 | None:intergenic | 45.0% | |
| !!! | AGCTGAGCTTGTTTTGACTG+AGG | - | chr4_1:55015584-55015603 | Msa0556750:intron | 45.0% |
| CCGTTTACCTTGGGATTTGA+AGG | + | chr4_1:55015699-55015718 | None:intergenic | 45.0% | |
| ! | GTGACCTCTGTTTGAAGCAT+GGG | + | chr4_1:55015816-55015835 | None:intergenic | 45.0% |
| ! | TGTGACCTCTGTTTGAAGCA+TGG | + | chr4_1:55015817-55015836 | None:intergenic | 45.0% |
| GAGGTCACAAAGTCTAGGTT+AGG | - | chr4_1:55015828-55015847 | Msa0556750:intron | 45.0% | |
| ATGCACATCAGTCCTGCTAA+AGG | - | chr4_1:55015876-55015895 | Msa0556750:intron | 45.0% | |
| GAAAATGGAGGACCAAATGG+GGG | + | chr4_1:55015933-55015952 | None:intergenic | 45.0% | |
| TTAGTTGCAGGGATTGGAAC+TGG | - | chr4_1:55016244-55016263 | Msa0556750:CDS | 45.0% | |
| TCAATGGCATCGTAGAACCA+TGG | - | chr4_1:55016333-55016352 | Msa0556750:CDS | 45.0% | |
| CAATGGCATCGTAGAACCAT+GGG | - | chr4_1:55016334-55016353 | Msa0556750:CDS | 45.0% | |
| AGGGAAGCTTTCTACCTTGT+CGG | - | chr4_1:55016471-55016490 | Msa0556750:CDS | 45.0% | |
| ! | ATACTTTCAGGTGGAAAGCC+AGG | - | chr4_1:55016556-55016575 | Msa0556750:intron | 45.0% |
| ! | CTGAATTTTGTGAGGTCCTG+TGG | + | chr4_1:55016671-55016690 | None:intergenic | 45.0% |
| CACAGGACCTCACAAAATTC+AGG | - | chr4_1:55016669-55016688 | Msa0556750:intron | 45.0% | |
| !! | AAAATTCAGGGTATTGGGGC+TGG | - | chr4_1:55016682-55016701 | Msa0556750:intron | 45.0% |
| !!! | TGGTTTTGTGCCCAGGAATT+TGG | - | chr4_1:55016702-55016721 | Msa0556750:intron | 45.0% |
| GCACAGTCCATTCTTGTCAA+CGG | + | chr4_1:55016917-55016936 | None:intergenic | 45.0% | |
| TGTGTATGTGCGGTTAGACA+TGG | + | chr4_1:55016997-55017016 | None:intergenic | 45.0% | |
| ! | CTCTTTTCCTAACCCAAGAG+TGG | - | chr4_1:55017081-55017100 | Msa0556750:intron | 45.0% |
| ! | CAAATGTGGAGTACCACTCT+TGG | + | chr4_1:55017097-55017116 | None:intergenic | 45.0% |
| CTGTGTAAGTGCGCATGATA+TGG | + | chr4_1:55017625-55017644 | None:intergenic | 45.0% | |
| ! | TTACGCGCTACTTTAAGGGA+GGG | + | chr4_1:55017778-55017797 | None:intergenic | 45.0% |
| !! | GATAGTTGGCCTTTAAGGGA+GGG | + | chr4_1:55017907-55017926 | None:intergenic | 45.0% |
| !! | TGATAGTTGGCCTTTAAGGG+AGG | + | chr4_1:55017908-55017927 | None:intergenic | 45.0% |
| CCCTTAAAGGCCAACTATCA+AGG | - | chr4_1:55017908-55017927 | Msa0556750:CDS | 45.0% | |
| !! | CCCTTGATAGTTGGCCTTTA+AGG | + | chr4_1:55017912-55017931 | None:intergenic | 45.0% |
| TGCAAAGAGGCCTGAAAATG+AGG | - | chr4_1:55018201-55018220 | Msa0556750:intron | 45.0% | |
| GCAAAGAGGCCTGAAAATGA+GGG | - | chr4_1:55018202-55018221 | Msa0556750:intron | 45.0% | |
| CAGGTTGTATTCCCAAGCTT+TGG | - | chr4_1:55018446-55018465 | Msa0556750:CDS | 45.0% | |
| !! | TACAGCATGGTGGATGATTG+TGG | + | chr4_1:55018581-55018600 | None:intergenic | 45.0% |
| CAATCATCCACCATGCTGTA+AGG | - | chr4_1:55018581-55018600 | Msa0556750:CDS | 45.0% | |
| CATAGTCATGCCTTACAGCA+TGG | + | chr4_1:55018594-55018613 | None:intergenic | 45.0% | |
| ! | CGGATATCCTTGCATTTTGG+AGG | - | chr4_1:55018734-55018753 | Msa0556750:five_prime_UTR | 45.0% |
| ! | GTTTTGCCCTCCAAAATGCA+AGG | + | chr4_1:55018744-55018763 | None:intergenic | 45.0% |
| !! | AAATATAAAAATTATGATAT+TGG | + | chr4_1:55016610-55016629 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAAAAAATCTTA+TGG | - | chr4_1:55018263-55018282 | Msa0556750:CDS | 5.0% |
| TATCTCCACGAGAGGTCGAA+GGG | + | chr4_1:55013103-55013122 | None:intergenic | 50.0% | |
| CTCCTCCCAAAATTTCCCTG+TGG | - | chr4_1:55013260-55013279 | Msa0556750:three_prime_UTR | 50.0% | |
| ! | GACCACAGGGAAATTTTGGG+AGG | + | chr4_1:55013265-55013284 | None:intergenic | 50.0% |
| AGTAGTGAAAAGTGGGGGTG+CGG | + | chr4_1:55013342-55013361 | None:intergenic | 50.0% | |
| GATAGCGAATTGGAGGGAAG+AGG | + | chr4_1:55013383-55013402 | None:intergenic | 50.0% | |
| ATTCTGGTGGAGATGGAACG+GGG | + | chr4_1:55013409-55013428 | None:intergenic | 50.0% | |
| GATTCTGGTGGAGATGGAAC+GGG | + | chr4_1:55013410-55013429 | None:intergenic | 50.0% | |
| GGAAGAGATTCTGGTGGAGA+TGG | + | chr4_1:55013416-55013435 | None:intergenic | 50.0% | |
| TAGAACGGGGGAAGAGATTC+TGG | + | chr4_1:55013425-55013444 | None:intergenic | 50.0% | |
| GGTTTGGGAATTGACGGAGA+CGG | + | chr4_1:55013455-55013474 | None:intergenic | 50.0% | |
| ! | CAAGCCTTTTCCCACTAGGT+GGG | - | chr4_1:55014461-55014480 | Msa0556750:intron | 50.0% |
| ! | AAGCCTTTTCCCACTAGGTG+GGG | - | chr4_1:55014462-55014481 | Msa0556750:intron | 50.0% |
| ACCCCGCTTAAACTCGGATT+AGG | + | chr4_1:55014538-55014557 | None:intergenic | 50.0% | |
| TCACAGACCCCGCTTAAACT+CGG | + | chr4_1:55014544-55014563 | None:intergenic | 50.0% | |
| GCGGGGTCTGTGACTATTAT+AGG | - | chr4_1:55014551-55014570 | Msa0556750:intron | 50.0% | |
| CCTATCACTCTATCGGAGTG+TGG | + | chr4_1:55014695-55014714 | None:intergenic | 50.0% | |
| CCACACTCCGATAGAGTGAT+AGG | - | chr4_1:55014692-55014711 | Msa0556750:intron | 50.0% | |
| ! | ATTGGCTCATCATGGGCATC+AGG | + | chr4_1:55014727-55014746 | None:intergenic | 50.0% |
| GCCCATGATGAGCCAATCAT+CGG | - | chr4_1:55014730-55014749 | Msa0556750:intron | 50.0% | |
| ! | CCCGATGATTGGCTCATCAT+GGG | + | chr4_1:55014734-55014753 | None:intergenic | 50.0% |
| CCCATGATGAGCCAATCATC+GGG | - | chr4_1:55014731-55014750 | Msa0556750:intron | 50.0% | |
| CCATGATGAGCCAATCATCG+GGG | - | chr4_1:55014732-55014751 | Msa0556750:intron | 50.0% | |
| ! | AGTGGATTTGCCCCGATGAT+TGG | + | chr4_1:55014745-55014764 | None:intergenic | 50.0% |
| TCATCGGGGCAAATCCACTT+AGG | - | chr4_1:55014746-55014765 | Msa0556750:intron | 50.0% | |
| ATCCACTTAGGTCCACCATC+TGG | - | chr4_1:55014758-55014777 | Msa0556750:intron | 50.0% | |
| !! | TTCCAGATGGTGGACCTAAG+TGG | + | chr4_1:55014763-55014782 | None:intergenic | 50.0% |
| ACTTAGGTCCACCATCTGGA+AGG | - | chr4_1:55014762-55014781 | Msa0556750:intron | 50.0% | |
| AGTCTAGACCTTCCAGATGG+TGG | + | chr4_1:55014773-55014792 | None:intergenic | 50.0% | |
| CCTAGTCTAGACCTTCCAGA+TGG | + | chr4_1:55014776-55014795 | None:intergenic | 50.0% | |
| CCATCTGGAAGGTCTAGACT+AGG | - | chr4_1:55014773-55014792 | Msa0556750:intron | 50.0% | |
| !! | TGTTAGTTGGTGAGGTCAGG+AGG | - | chr4_1:55014827-55014846 | Msa0556750:intron | 50.0% |
| ! | CCCCAATGATTGGCTCATCA+TGG | + | chr4_1:55014881-55014900 | None:intergenic | 50.0% |
| AACCACATAGGCCCACCATT+TGG | - | chr4_1:55014903-55014922 | Msa0556750:intron | 50.0% | |
| !! | TTCCAAATGGTGGGCCTATG+TGG | + | chr4_1:55014908-55014927 | None:intergenic | 50.0% |
| ACATAGGCCCACCATTTGGA+AGG | - | chr4_1:55014907-55014926 | Msa0556750:intron | 50.0% | |
| CTAGACTAGGAGAAAGAGGG+TGG | - | chr4_1:55014931-55014950 | Msa0556750:intron | 50.0% | |
| GTTCAGAGGCTCTACAGCTA+TGG | + | chr4_1:55015130-55015149 | None:intergenic | 50.0% | |
| GAACCTACTAGTGGGAACAC+AGG | - | chr4_1:55015459-55015478 | Msa0556750:intron | 50.0% | |
| !!! | TGTTTTGACTGAGGCTGCGA+AGG | - | chr4_1:55015593-55015612 | Msa0556750:intron | 50.0% |
| !!! | GTTTTGACTGAGGCTGCGAA+GGG | - | chr4_1:55015594-55015613 | Msa0556750:intron | 50.0% |
| GGGCTTCAGTCAGAAAATGG+AGG | + | chr4_1:55015945-55015964 | None:intergenic | 50.0% | |
| TGGGGGCTTCAGTCAGAAAA+TGG | + | chr4_1:55015948-55015967 | None:intergenic | 50.0% | |
| AGACAACTGGGCCAGAGATA+TGG | - | chr4_1:55016194-55016213 | Msa0556750:intron | 50.0% | |
| GACAACTGGGCCAGAGATAT+GGG | - | chr4_1:55016195-55016214 | Msa0556750:intron | 50.0% | |
| GGAACTGGTGGAACCATTTC+TGG | - | chr4_1:55016259-55016278 | Msa0556750:CDS | 50.0% | |
| !! | GGTGGAACCATTTCTGGAAC+CGG | - | chr4_1:55016265-55016284 | Msa0556750:CDS | 50.0% |
| ! | GAATCGACCGGTTCCAGAAA+TGG | + | chr4_1:55016275-55016294 | None:intergenic | 50.0% |
| ! | TGGAGTACCACTCTTGGGTT+AGG | + | chr4_1:55017091-55017110 | None:intergenic | 50.0% |
| GCTATAGGGACTATCTGACC+AGG | - | chr4_1:55017150-55017169 | Msa0556750:intron | 50.0% | |
| ! | ACTTTAAGGGAGGGAAGGGA+AGG | + | chr4_1:55017769-55017788 | None:intergenic | 50.0% |
| ! | CGCTACTTTAAGGGAGGGAA+GGG | + | chr4_1:55017773-55017792 | None:intergenic | 50.0% |
| ! | GTTACGCGCTACTTTAAGGG+AGG | + | chr4_1:55017779-55017798 | None:intergenic | 50.0% |
| ! | GGTTCTTCCCCCTTGATAGT+TGG | + | chr4_1:55017921-55017940 | None:intergenic | 50.0% |
| CTGCATTGCAGGTTGCAAAG+AGG | - | chr4_1:55018188-55018207 | Msa0556750:intron | 50.0% | |
| AGTCATGCCTTACAGCATGG+TGG | + | chr4_1:55018591-55018610 | None:intergenic | 50.0% | |
| GTATCTCCACGAGAGGTCGA+AGG | + | chr4_1:55013104-55013123 | None:intergenic | 55.0% | |
| ! | GTAGTGAAAAGTGGGGGTGC+GGG | + | chr4_1:55013341-55013360 | None:intergenic | 55.0% |
| GAATTGGAGGGAAGAGGTGG+GGG | + | chr4_1:55013377-55013396 | None:intergenic | 55.0% | |
| CGAATTGGAGGGAAGAGGTG+GGG | + | chr4_1:55013378-55013397 | None:intergenic | 55.0% | |
| GCGAATTGGAGGGAAGAGGT+GGG | + | chr4_1:55013379-55013398 | None:intergenic | 55.0% | |
| AGCGAATTGGAGGGAAGAGG+TGG | + | chr4_1:55013380-55013399 | None:intergenic | 55.0% | |
| GGGGGAGATAGCGAATTGGA+GGG | + | chr4_1:55013389-55013408 | None:intergenic | 55.0% | |
| AACGGGGGGAGATAGCGAAT+TGG | + | chr4_1:55013393-55013412 | None:intergenic | 55.0% | |
| TTCTGGTGGAGATGGAACGG+GGG | + | chr4_1:55013408-55013427 | None:intergenic | 55.0% | |
| AACGGGGGAAGAGATTCTGG+TGG | + | chr4_1:55013422-55013441 | None:intergenic | 55.0% | |
| CTCTTCCCCCGTTCTATGCA+AGG | - | chr4_1:55013429-55013448 | Msa0556750:CDS | 55.0% | |
| AGACGGCCTTGCATAGAACG+GGG | + | chr4_1:55013438-55013457 | None:intergenic | 55.0% | |
| GAGACGGCCTTGCATAGAAC+GGG | + | chr4_1:55013439-55013458 | None:intergenic | 55.0% | |
| GGAGACGGCCTTGCATAGAA+CGG | + | chr4_1:55013440-55013459 | None:intergenic | 55.0% | |
| AGGAGCCATAACACCTGGGA+AGG | - | chr4_1:55014031-55014050 | Msa0556750:intron | 55.0% | |
| CCACCTAGTGGGAAAAGGCT+TGG | + | chr4_1:55014463-55014482 | None:intergenic | 55.0% | |
| ! | CCAAGCCTTTTCCCACTAGG+TGG | - | chr4_1:55014460-55014479 | Msa0556750:intron | 55.0% |
| CATCCCCACCTAGTGGGAAA+AGG | + | chr4_1:55014468-55014487 | None:intergenic | 55.0% | |
| ! | CTTTTCCCACTAGGTGGGGA+TGG | - | chr4_1:55014466-55014485 | Msa0556750:intron | 55.0% |
| TAGCACCATCCCCACCTAGT+GGG | + | chr4_1:55014474-55014493 | None:intergenic | 55.0% | |
| TTAGCACCATCCCCACCTAG+TGG | + | chr4_1:55014475-55014494 | None:intergenic | 55.0% | |
| ! | CCCCGATGATTGGCTCATCA+TGG | + | chr4_1:55014735-55014754 | None:intergenic | 55.0% |
| AGGAAAAAGAGGGTGGGGTC+AGG | - | chr4_1:55014793-55014812 | Msa0556750:intron | 55.0% | |
| AAAAAGAGGGTGGGGTCAGG+AGG | - | chr4_1:55014796-55014815 | Msa0556750:intron | 55.0% | |
| CATGGTTGTCAGGCCCAATG+TGG | + | chr4_1:55014863-55014882 | None:intergenic | 55.0% | |
| TAGGAGAAAGAGGGTGGGTC+AGG | - | chr4_1:55014937-55014956 | Msa0556750:intron | 55.0% | |
| ! | GAGGCTGCGAAGGGTATGAA+TGG | - | chr4_1:55015603-55015622 | Msa0556750:intron | 55.0% |
| AATGGAGGACCAAATGGGGG+TGG | + | chr4_1:55015930-55015949 | None:intergenic | 55.0% | |
| GTTGCAGGGATTGGAACTGG+TGG | - | chr4_1:55016247-55016266 | Msa0556750:CDS | 55.0% | |
| AGCACTTCAGGAAGGCTTGC+TGG | - | chr4_1:55017534-55017553 | Msa0556750:intron | 55.0% | |
| ! | GCGCTACTTTAAGGGAGGGA+AGG | + | chr4_1:55017774-55017793 | None:intergenic | 55.0% |
| GTTGAAGGGCCGTTGATCAG+TGG | + | chr4_1:55018703-55018722 | None:intergenic | 55.0% | |
| CATTGCCCTTCGACCTCTCG+TGG | - | chr4_1:55013095-55013114 | Msa0556750:three_prime_UTR | 60.0% | |
| GGGGGGAGATAGCGAATTGG+AGG | + | chr4_1:55013390-55013409 | None:intergenic | 60.0% | |
| TCTGGTGGAGATGGAACGGG+GGG | + | chr4_1:55013407-55013426 | None:intergenic | 60.0% | |
| GACGGCCTTGCATAGAACGG+GGG | + | chr4_1:55013437-55013456 | None:intergenic | 60.0% | |
| AAGGTGTAGGCGTGCAGCAC+AGG | + | chr4_1:55014203-55014222 | None:intergenic | 60.0% | |
| GAGAAAGAGGGTGGGTCAGG+AGG | - | chr4_1:55014940-55014959 | Msa0556750:intron | 60.0% | |
| CTGGTAGGAGTCTCCGACTC+TGG | - | chr4_1:55015094-55015113 | Msa0556750:intron | 60.0% | |
| AGCGTAGTGCCACCCCCATT+TGG | - | chr4_1:55015918-55015937 | Msa0556750:intron | 60.0% | |
| !!! | TTGGGGCTGGTTTTGTGCCC+AGG | - | chr4_1:55016695-55016714 | Msa0556750:intron | 60.0% |
| GGGAAGGTTCCCCAAGTGCT+TGG | + | chr4_1:55017753-55017772 | None:intergenic | 60.0% | |
| TGCTGCTGCAGCTGCATTGC+AGG | - | chr4_1:55018177-55018196 | Msa0556750:intron | 60.0% | |
| GGAGGGAAGAGGTGGGGGTG+CGG | + | chr4_1:55013372-55013391 | None:intergenic | 70.0% | |
| ! | GGAAGAGGTGGGGGTGCGGC+GGG | + | chr4_1:55013368-55013387 | None:intergenic | 75.0% |
| ! | GGGAAGAGGTGGGGGTGCGG+CGG | + | chr4_1:55013369-55013388 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 55013072 | 55018868 | 55013072 | ID=Msa0556750;Name=Msa0556750 |
| chr4_1 | mRNA | 55013072 | 55018868 | 55013072 | ID=Msa0556750-mRNA-1;Parent=Msa0556750;Name=Msa0556750-mRNA-1;_AED=0.10;_eAED=0.10;_QI=195|1|1|1|0.9|0.81|11|327|383 |
| chr4_1 | exon | 55013072 | 55013491 | 55013072 | ID=Msa0556750-mRNA-1:exon:16394;Parent=Msa0556750-mRNA-1 |
| chr4_1 | exon | 55013703 | 55013783 | 55013703 | ID=Msa0556750-mRNA-1:exon:16393;Parent=Msa0556750-mRNA-1 |
| chr4_1 | exon | 55014385 | 55014444 | 55014385 | ID=Msa0556750-mRNA-1:exon:16392;Parent=Msa0556750-mRNA-1 |
| chr4_1 | exon | 55015187 | 55015266 | 55015187 | ID=Msa0556750-mRNA-1:exon:16391;Parent=Msa0556750-mRNA-1 |
| chr4_1 | exon | 55015363 | 55015414 | 55015363 | ID=Msa0556750-mRNA-1:exon:16390;Parent=Msa0556750-mRNA-1 |
| chr4_1 | exon | 55015619 | 55015756 | 55015619 | ID=Msa0556750-mRNA-1:exon:16389;Parent=Msa0556750-mRNA-1 |
| chr4_1 | exon | 55016230 | 55016493 | 55016230 | ID=Msa0556750-mRNA-1:exon:16388;Parent=Msa0556750-mRNA-1 |
| chr4_1 | exon | 55017888 | 55017945 | 55017888 | ID=Msa0556750-mRNA-1:exon:16387;Parent=Msa0556750-mRNA-1 |
| chr4_1 | exon | 55018236 | 55018345 | 55018236 | ID=Msa0556750-mRNA-1:exon:16386;Parent=Msa0556750-mRNA-1 |
| chr4_1 | exon | 55018427 | 55018802 | 55018427 | ID=Msa0556750-mRNA-1:exon:16385;Parent=Msa0556750-mRNA-1 |
| chr4_1 | exon | 55018834 | 55018868 | 55018834 | ID=Msa0556750-mRNA-1:exon:16384;Parent=Msa0556750-mRNA-1 |
| chr4_1 | five_prime_UTR | 55018834 | 55018868 | 55018834 | ID=Msa0556750-mRNA-1:five_prime_utr;Parent=Msa0556750-mRNA-1 |
| chr4_1 | five_prime_UTR | 55018643 | 55018802 | 55018643 | ID=Msa0556750-mRNA-1:five_prime_utr;Parent=Msa0556750-mRNA-1 |
| chr4_1 | CDS | 55018427 | 55018642 | 55018427 | ID=Msa0556750-mRNA-1:cds;Parent=Msa0556750-mRNA-1 |
| chr4_1 | CDS | 55018236 | 55018345 | 55018236 | ID=Msa0556750-mRNA-1:cds;Parent=Msa0556750-mRNA-1 |
| chr4_1 | CDS | 55017888 | 55017945 | 55017888 | ID=Msa0556750-mRNA-1:cds;Parent=Msa0556750-mRNA-1 |
| chr4_1 | CDS | 55016230 | 55016493 | 55016230 | ID=Msa0556750-mRNA-1:cds;Parent=Msa0556750-mRNA-1 |
| chr4_1 | CDS | 55015619 | 55015756 | 55015619 | ID=Msa0556750-mRNA-1:cds;Parent=Msa0556750-mRNA-1 |
| chr4_1 | CDS | 55015363 | 55015414 | 55015363 | ID=Msa0556750-mRNA-1:cds;Parent=Msa0556750-mRNA-1 |
| chr4_1 | CDS | 55015187 | 55015266 | 55015187 | ID=Msa0556750-mRNA-1:cds;Parent=Msa0556750-mRNA-1 |
| chr4_1 | CDS | 55014385 | 55014444 | 55014385 | ID=Msa0556750-mRNA-1:cds;Parent=Msa0556750-mRNA-1 |
| chr4_1 | CDS | 55013703 | 55013783 | 55013703 | ID=Msa0556750-mRNA-1:cds;Parent=Msa0556750-mRNA-1 |
| chr4_1 | CDS | 55013399 | 55013491 | 55013399 | ID=Msa0556750-mRNA-1:cds;Parent=Msa0556750-mRNA-1 |
| chr4_1 | three_prime_UTR | 55013072 | 55013398 | 55013072 | ID=Msa0556750-mRNA-1:three_prime_utr;Parent=Msa0556750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
