AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0803930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0803930 MtrunA17_Chr5g0411661 99.035 518 5 0 1 518 1 518 0.0 1061
Msa0803930 MtrunA17_Chr5g0428001 83.140 516 78 1 3 518 1 507 0.0 886
Msa0803930 MtrunA17_Chr2g0285171 59.825 458 175 2 52 508 83 532 0.0 572
Msa0803930 MtrunA17_Chr8g0378091 58.190 464 187 4 53 514 9 467 0.0 551
Msa0803930 MtrunA17_Chr3g0121851 58.405 464 186 4 53 514 9 467 0.0 550
Msa0803930 MtrunA17_Chr2g0277581 54.140 471 201 6 47 510 130 592 1.35e-172 500
Msa0803930 MtrunA17_Chr3g0115291 53.291 471 202 6 46 509 116 575 4.26e-170 493
Msa0803930 MtrunA17_Chr7g0268951 64.571 175 62 0 81 255 1 175 2.73e-76 238
Msa0803930 MtrunA17_Chr1g0186271 37.048 332 151 7 171 501 10 284 7.63e-56 189
Msa0803930 MtrunA17_Chr7g0268941 45.695 151 81 1 360 509 16 166 2.44e-38 138
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0803930 AT4G37930.1 88.911 514 56 1 1 514 1 513 0.0 962
Msa0803930 AT5G26780.1 85.575 513 73 1 3 514 1 513 0.0 918
Msa0803930 AT5G26780.4 85.575 513 73 1 3 514 1 513 0.0 918
Msa0803930 AT5G26780.2 83.176 529 72 2 3 514 1 529 0.0 910
Msa0803930 AT5G26780.3 83.176 529 72 2 3 514 1 529 0.0 910
Msa0803930 AT4G32520.2 58.753 497 187 6 22 508 40 528 0.0 601
Msa0803930 AT4G32520.1 58.753 497 187 6 22 508 40 528 0.0 601
Msa0803930 AT4G13930.1 57.974 464 188 4 53 514 9 467 0.0 548
Msa0803930 AT4G13890.1 56.209 459 194 4 53 509 9 462 0.0 526
Msa0803930 AT4G13890.2 59.008 383 155 2 53 433 9 391 1.36e-164 473
Msa0803930 AT1G36370.1 49.797 492 230 6 21 504 106 588 1.78e-164 480
Msa0803930 AT1G22020.2 49.595 494 234 6 24 510 113 598 3.60e-163 476
Msa0803930 AT1G22020.1 49.595 494 234 6 24 510 113 598 3.60e-163 476

Find 130 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCGATGCATCTGTGAATT+TGG 0.197823 5_3:-19405741 Msa0803930:CDS
TTCATGATAGCTTCTGAAAA+TGG 0.216084 5_3:+19404734 None:intergenic
TTCGGTTGGATCCAGCTAAA+TGG 0.224913 5_3:-19408379 Msa0803930:CDS
GTTAAGGTGTGGAGAATTAT+AGG 0.237993 5_3:+19411788 None:intergenic
AAAGGTTATGAGCTTGTTTC+TGG 0.242132 5_3:-19406332 Msa0803930:CDS
AGACTGTATAGGAGAATTTA+TGG 0.256057 5_3:+19404660 None:intergenic
ATAATTAGGAACAAAATTAA+AGG 0.266678 5_3:-19405573 Msa0803930:intron
TTTGGTGAATCTCAAGAATA+AGG 0.268021 5_3:-19406288 Msa0803930:intron
CTATGGTTCCTGGTGGTATC+AGG 0.288605 5_3:-19405917 Msa0803930:CDS
ATTTATTGAACAAAATAAAA+AGG 0.290520 5_3:-19411592 Msa0803930:five_prime_UTR
CCTCACAACCATACCATTAC+TGG 0.309322 5_3:-19406856 Msa0803930:CDS
AGCTGTGATGTTAGCAGATA+TGG 0.329731 5_3:-19407264 Msa0803930:CDS
GTTCAATAAATACTATGATT+TGG 0.331496 5_3:+19411604 None:intergenic
AATTAGTTGAAACCAGCTTA+TGG 0.335509 5_3:-19404701 Msa0803930:three_prime_UTR
ACTTTCATTTGGGTTCTGTT+TGG 0.335983 5_3:-19404867 Msa0803930:three_prime_UTR
TCAATAATATCAGCAATTTC+AGG 0.336823 5_3:+19409270 None:intergenic
GATGTGTCTGCTATGGTTCC+TGG 0.354698 5_3:-19405927 Msa0803930:CDS
CAAAGAGAATTCACGTGTTT+CGG 0.355000 5_3:-19409629 Msa0803930:intron
GTGCTTTCATCCAATCTATA+TGG 0.358204 5_3:+19407666 None:intergenic
ATGCTTCCAAGGCACGCTTT+TGG 0.362934 5_3:+19408402 None:intergenic
TTCTTACCTCCCCATTTAGC+TGG 0.365927 5_3:+19408368 None:intergenic
TGAGACAATGCCATATAGAT+TGG 0.372179 5_3:-19407676 Msa0803930:CDS
GACTGAGAATCATCTAGTTT+TGG 0.372451 5_3:-19406306 Msa0803930:CDS
AGAAATCTGCTACCCTCTTC+AGG 0.373752 5_3:-19407504 Msa0803930:CDS
TCGGTTGGATCCAGCTAAAT+GGG 0.380732 5_3:-19408378 Msa0803930:CDS
AGTGGAGAATTCAATTGCTT+TGG 0.389470 5_3:+19409306 None:intergenic
AGGCCAAAACTAATTGTTGC+TGG 0.397586 5_3:-19407484 Msa0803930:CDS
GCACCAGCAACAATTAGTTT+TGG 0.398596 5_3:+19407481 None:intergenic
TCATCTTAAATTAAGTGTTA+AGG 0.415196 5_3:+19411772 None:intergenic
AAATACAGTGAAGGTTATCC+TGG 0.420592 5_3:-19408616 Msa0803930:CDS
GTTATAATTATTTATTGAAG+TGG 0.424646 5_3:-19411641 Msa0803930:five_prime_UTR
CTCAACATCATGACGAAGCT+TGG 0.426845 5_3:+19405502 None:intergenic
ACAAAGATGAGATAGATAGA+TGG 0.428734 5_3:+19411531 None:intergenic
ATCAATCAAGCTGTCTTCCC+TGG 0.430141 5_3:-19406892 Msa0803930:CDS
TATAGCAGATGAAAAGCATT+AGG 0.436447 5_3:-19405025 Msa0803930:three_prime_UTR
TGAGGACCACCTTGCAGTCC+AGG 0.439744 5_3:+19406874 None:intergenic
AGCGTGCCTTGGAAGCATTT+CGG 0.445650 5_3:-19408397 Msa0803930:CDS
GAACTCCTGCTCTTACTTCA+AGG 0.449715 5_3:-19405802 Msa0803930:CDS
TTGTCATAGACAGCTTCATC+AGG 0.455623 5_3:+19409649 None:intergenic
CTATCTGTTATGCAAGCTGT+TGG 0.456660 5_3:-19408655 Msa0803930:CDS
GGCAGTGGTGGTAAAGATTA+TGG 0.456864 5_3:-19405101 Msa0803930:intron
TATCCTGGAGCAAGATATTA+CGG 0.473262 5_3:-19408601 Msa0803930:CDS
CGTCGAGGAGGATTTCGTTA+AGG 0.474022 5_3:-19405774 Msa0803930:CDS
GTGAACGTGCAGCCTTTGTC+TGG 0.476132 5_3:-19408076 Msa0803930:CDS
CCTCCGTAATATCTTGCTCC+AGG 0.483511 5_3:+19408598 None:intergenic
TGCCTTGGAAGCATTTCGGT+TGG 0.492777 5_3:-19408393 Msa0803930:CDS
GCAAAACAATTCCCAACCAT+TGG 0.494544 5_3:-19405473 Msa0803930:CDS
TTTAGCTGTTGCGTTGAAGC+AGG 0.495619 5_3:-19406833 Msa0803930:intron
TGCTTCTTCTGTTTACTACA+AGG 0.498202 5_3:-19409816 Msa0803930:intron
ACAACTCACAAGTCACTTCG+TGG 0.500888 5_3:-19407170 Msa0803930:CDS
TCTTGGTATGCTTTATACTC+TGG 0.501564 5_3:+19406511 None:intergenic
GAATTTGGCTTTGAAGATCA+AGG 0.509614 5_3:-19405726 Msa0803930:CDS
GCTGTCTTCCCTGGACTGCA+AGG 0.511974 5_3:-19406883 Msa0803930:CDS
GGTTCCTGGTGGTATCAGGA+TGG 0.513253 5_3:-19405913 Msa0803930:CDS
CGCAACAGCTAAACCAGTAA+TGG 0.514440 5_3:+19406843 None:intergenic
CAAGCTTCGTCATGATGTTG+AGG 0.517604 5_3:-19405501 Msa0803930:CDS
AGCCCTTTGGGAGACTGTAT+AGG 0.519331 5_3:+19404649 None:intergenic
ACTACATCTGCATAATCAAA+AGG 0.519854 5_3:+19407200 None:intergenic
GCAATTGAATTCTCCACTTG+AGG 0.521875 5_3:-19409301 Msa0803930:CDS
GCAGATGAAAAGCATTAGGC+TGG 0.522187 5_3:-19405021 Msa0803930:three_prime_UTR
TCAGGATCAATTTCCTCAAG+TGG 0.525701 5_3:+19409288 None:intergenic
TCCTGGAGATGTGTCTGCTA+TGG 0.527373 5_3:-19405934 Msa0803930:CDS
ACATCTTTCTCATGGTTACC+AGG 0.529057 5_3:-19407972 Msa0803930:intron
GGTTATGAGCTTGTTTCTGG+TGG 0.529989 5_3:-19406329 Msa0803930:CDS
ACTATGCCAAAAGCGTGCCT+TGG 0.531463 5_3:-19408408 Msa0803930:CDS
GAAGGTGTTCTATGACTATG+AGG 0.531695 5_3:-19406920 Msa0803930:intron
CTTTGAGATGGCAATGGCAA+TGG 0.531762 5_3:-19409891 Msa0803930:intron
ACCATAGCAGACACATCTCC+AGG 0.532051 5_3:+19405933 None:intergenic
TTGCAGGCTCTGAGTGAGAA+AGG 0.532506 5_3:-19406350 Msa0803930:intron
GTATAAAGCATACCAAGAGC+AGG 0.537001 5_3:-19406506 Msa0803930:CDS
CATGGAGGACATCTTTCTCA+TGG 0.540963 5_3:-19407980 Msa0803930:CDS
ATGGCACTTGATCTCCCTCA+TGG 0.541789 5_3:-19407998 Msa0803930:CDS
GAAACCTCATGATAGAATCA+TGG 0.544843 5_3:-19408017 Msa0803930:CDS
GTTCCTGGTGGTATCAGGAT+GGG 0.544981 5_3:-19405912 Msa0803930:intron
CAATAAATACTATGATTTGG+TGG 0.546160 5_3:+19411607 None:intergenic
TTAAATTAAGTGTTAAGGTG+TGG 0.547577 5_3:+19411777 None:intergenic
CAGCTAAACCAGTAATGGTA+TGG 0.548948 5_3:+19406848 None:intergenic
AATTGCTGAGAACCTGCTCT+TGG 0.549215 5_3:+19406494 None:intergenic
CTCATGACATGTCCATAAGC+TGG 0.550536 5_3:+19404689 None:intergenic
ATCAGTGGACTGGTTGCAGC+TGG 0.551421 5_3:-19407236 Msa0803930:CDS
AGTCAACAAACAAGGAAAAG+AGG 0.553974 5_3:-19407105 Msa0803930:intron
GTCAAGCAGTCCATTGTGAT+CGG 0.558816 5_3:-19405079 Msa0803930:CDS
AACTCCTGCTCTTACTTCAA+GGG 0.559611 5_3:-19405801 Msa0803930:CDS
CAATTGCGCAAAATTTGCAC+AGG 0.560674 5_3:-19406476 Msa0803930:intron
GTGTAAACATGAAAATTTGA+AGG 0.561653 5_3:+19408049 None:intergenic
TTCCAACACCTTCTCAACTC+TGG 0.563616 5_3:+19405989 None:intergenic
AAGATCAAGGCAGAGAGCAA+AGG 0.565204 5_3:-19405713 Msa0803930:intron
GTTATGAGCTTGTTTCTGGT+GGG 0.566698 5_3:-19406328 Msa0803930:CDS
TGAGAAAGCTAGACAATGGA+AGG 0.567432 5_3:-19409244 Msa0803930:intron
TATAGATTGGATGAAAGCAC+AGG 0.570064 5_3:-19407663 Msa0803930:CDS
TCTGCATAATCAAAAGGTGA+AGG 0.572432 5_3:+19407206 None:intergenic
TTTCTGATTAATGGAAGAGG+AGG 0.573198 5_3:-19405054 Msa0803930:exon
TTCCGCCATAATCTAAAACA+AGG 0.582542 5_3:+19412035 None:intergenic
CTCCAGAGTTGAGAAGGTGT+TGG 0.584928 5_3:-19405991 Msa0803930:CDS
CAATGGCAATGGCTCTTCGT+AGG 0.584959 5_3:-19409880 Msa0803930:CDS
TGATGGCTCCAGAGTTGAGA+AGG 0.585979 5_3:-19405997 Msa0803930:CDS
AATCCCCTTGAAGTAAGAGC+AGG 0.586622 5_3:+19405797 None:intergenic
ACTCCTGCTCTTACTTCAAG+GGG 0.596470 5_3:-19405800 Msa0803930:CDS
CTGCATAATCAAAAGGTGAA+GGG 0.596849 5_3:+19407207 None:intergenic
CCAGTAATGGTATGGTTGTG+AGG 0.597553 5_3:+19406856 None:intergenic
GGAAATCTCTGACTGCATGT+AGG 0.601570 5_3:+19405523 None:intergenic
TATGGCACATATCAGTGGAC+TGG 0.602613 5_3:-19407246 Msa0803930:CDS
ATCCAACCGAAATGCTTCCA+AGG 0.610410 5_3:+19408391 None:intergenic
TCTCATCTTTGAGATGGCAA+TGG 0.611876 5_3:-19409897 Msa0803930:intron
TGATTATGCACGCATTCGCA+AGG 0.614686 5_3:-19407437 Msa0803930:intron
GCAGATATGGCACATATCAG+TGG 0.614862 5_3:-19407251 Msa0803930:CDS
GAGAAAGATGTCCTCCATGA+GGG 0.617557 5_3:+19407984 None:intergenic
TACTTCAAGGGGATTCGTCG+AGG 0.620380 5_3:-19405789 Msa0803930:CDS
AGCTTGAGAAAGCTAGACAA+TGG 0.621507 5_3:-19409248 Msa0803930:CDS
AATCTCTGACTGCATGTAGG+AGG 0.623301 5_3:+19405526 None:intergenic
ATAATCATACAGACGTGCAT+AGG 0.625798 5_3:+19407453 None:intergenic
GTCTTCCCTGGACTGCAAGG+TGG 0.628225 5_3:-19406880 Msa0803930:CDS
TTCAAGGGGATTCGTCGAGG+AGG 0.629218 5_3:-19405786 Msa0803930:CDS
ATGACAAACAAATACAGTGA+AGG 0.630108 5_3:-19408625 Msa0803930:CDS
ACAGAAGAAGCACTGAAGAG+AGG 0.631325 5_3:+19409827 None:intergenic
TTTGAAGGTGAACCAGACAA+AGG 0.639590 5_3:+19408064 None:intergenic
ACGAAGTGACTTGTGAGTTG+TGG 0.643535 5_3:+19407172 None:intergenic
CGGTTGGATCCAGCTAAATG+GGG 0.647808 5_3:-19408377 Msa0803930:CDS
GAGGACCACCTTGCAGTCCA+GGG 0.648946 5_3:+19406875 None:intergenic
AGTGCCATGATTCTATCATG+AGG 0.654392 5_3:+19408013 None:intergenic
ATACCCATCCTGATACCACC+AGG 0.659126 5_3:+19405909 None:intergenic
TTAAAAGAAGTCAACAAACA+AGG 0.661947 5_3:-19407113 Msa0803930:CDS
AAGTCACTTCGTGGACCACG+TGG 0.667056 5_3:-19407161 Msa0803930:CDS
TTGGATCCAGCTAAATGGGG+AGG 0.668787 5_3:-19408374 Msa0803930:intron
TGAGAAAGATGTCCTCCATG+AGG 0.670745 5_3:+19407983 None:intergenic
AGGATACATTGATTATGACC+AGG 0.672531 5_3:-19407643 Msa0803930:intron
TCATTACAGATATATTGACA+TGG 0.693044 5_3:-19408438 Msa0803930:intron
GCACTTGATCTCCCTCATGG+AGG 0.702241 5_3:-19407995 Msa0803930:CDS
GTGTCTGCTATGGTTCCTGG+TGG 0.714961 5_3:-19405924 Msa0803930:CDS
CCTGGAGCAAGATATTACGG+AGG 0.734873 5_3:-19408598 Msa0803930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTGAATAAAATAATAATTT+AGG + chr5_3:19405038-19405057 None:intergenic 10.0%
!! ATTTATTGAACAAAATAAAA+AGG - chr5_3:19405147-19405166 Msa0803930:intron 10.0%
!!! AAATTTTTTCTCATTTAAAA+CGG + chr5_3:19406162-19406181 None:intergenic 10.0%
!! ATTTATTGAACAAAATAAAA+AGG - chr5_3:19405147-19405166 Msa0803930:intron 10.0%
!! AATTTATATTTAGAAAATCA+CGG + chr5_3:19409348-19409367 None:intergenic 10.0%
!!! TTACATTTACATTTTATTTG+AGG + chr5_3:19404742-19404761 None:intergenic 15.0%
!! TAATAATTTAGGTAAAACAA+TGG + chr5_3:19405027-19405046 None:intergenic 15.0%
!! GTTATAATTATTTATTGAAG+TGG - chr5_3:19405098-19405117 Msa0803930:CDS 15.0%
!!! TTACATTTACATTTAATTTG+AGG + chr5_3:19406365-19406384 None:intergenic 15.0%
!! ATATAATTTAGGTAAAACAA+TGG + chr5_3:19406645-19406664 None:intergenic 15.0%
!! GTTATAATTATTTATTGAAG+TGG - chr5_3:19405098-19405117 Msa0803930:CDS 15.0%
!! AAAAAGAGATATGTTATTAA+TGG + chr5_3:19407052-19407071 None:intergenic 15.0%
!! TTAATGATTATTTACATGTT+TGG - chr5_3:19407169-19407188 Msa0803930:CDS 15.0%
!!! AATATGTTATTTTTTTTCAG+TGG - chr5_3:19407410-19407429 Msa0803930:intron 15.0%
!!! GATTTTTTAATATGTTAGAA+TGG - chr5_3:19408607-19408626 Msa0803930:CDS 15.0%
!!! ATAAAAAATGAATTTTGTTC+AGG + chr5_3:19409674-19409693 None:intergenic 15.0%
!! AATAAATCGAAAAATAATGA+TGG - chr5_3:19409931-19409950 Msa0803930:intron 15.0%
!!! ATTTTTTTAGCTTAAGAAAA+GGG - chr5_3:19410060-19410079 Msa0803930:intron 15.0%
!!! TTTTCAAAAAAACTTTTTTC+AGG - chr5_3:19410715-19410734 Msa0803930:intron 15.0%
!!! TTTCAAAAAAACTTTTTTCA+GGG - chr5_3:19410716-19410735 Msa0803930:intron 15.0%
!! ATAATTAGGAACAAAATTAA+AGG - chr5_3:19411166-19411185 Msa0803930:intron 15.0%
!! TCATCTTAAATTAAGTGTTA+AGG + chr5_3:19404970-19404989 None:intergenic 20.0%
!! GTTCAATAAATACTATGATT+TGG + chr5_3:19405138-19405157 None:intergenic 20.0%
!! TCATCTTAAATTAAGTGTTA+AGG + chr5_3:19404970-19404989 None:intergenic 20.0%
!! GTTCAATAAATACTATGATT+TGG + chr5_3:19405138-19405157 None:intergenic 20.0%
!! TATTGAACAAAATAAAAAGG+AGG - chr5_3:19405150-19405169 Msa0803930:intron 20.0%
!! ACAAGAAACATATTAATATC+TGG + chr5_3:19407315-19407334 None:intergenic 20.0%
!!! GGTTATTTGATTATATGTTT+TGG - chr5_3:19407375-19407394 Msa0803930:intron 20.0%
!!! ATGTATATATTTGTTGAGTA+TGG - chr5_3:19407582-19407601 Msa0803930:intron 20.0%
!! AAATCTGTGATTTAATAGAA+CGG + chr5_3:19407695-19407714 None:intergenic 20.0%
!! AGATGCAAAAGATTAATAAT+GGG + chr5_3:19407801-19407820 None:intergenic 20.0%
!! AAGATGCAAAAGATTAATAA+TGG + chr5_3:19407802-19407821 None:intergenic 20.0%
!! TGATTGTGTGTTAAAATATT+TGG - chr5_3:19407910-19407929 Msa0803930:intron 20.0%
!!! ACTTGGATGTTTTATTATTT+CGG - chr5_3:19408020-19408039 Msa0803930:CDS 20.0%
!!! ACTGAATAAAGTAATCATTT+TGG - chr5_3:19408225-19408244 Msa0803930:intron 20.0%
!! AAAAACAACAGATTATAAGA+AGG + chr5_3:19409374-19409393 None:intergenic 20.0%
!! AATTCTTCTTACTTATTTGA+AGG - chr5_3:19409801-19409820 Msa0803930:intron 20.0%
!!! CATTTTTTTAGCTTAAGAAA+AGG - chr5_3:19410059-19410078 Msa0803930:intron 20.0%
!! AATAACATTAAATATGTTGC+AGG - chr5_3:19410373-19410392 Msa0803930:intron 20.0%
!! TTATTCTCTTCATTATATTG+AGG + chr5_3:19411437-19411456 None:intergenic 20.0%
!!! AATGTTTTCAACTTTCATTT+GGG - chr5_3:19411862-19411881 Msa0803930:five_prime_UTR 20.0%
! TTAAATTAAGTGTTAAGGTG+TGG + chr5_3:19404965-19404984 None:intergenic 25.0%
!! CAATAAATACTATGATTTGG+TGG + chr5_3:19405135-19405154 None:intergenic 25.0%
!!! GTTGACAGTTTTTTTTTTAG+GGG + chr5_3:19405416-19405435 None:intergenic 25.0%
!!! CGTTGACAGTTTTTTTTTTA+GGG + chr5_3:19405417-19405436 None:intergenic 25.0%
!!! ACGTTGACAGTTTTTTTTTT+AGG + chr5_3:19405418-19405437 None:intergenic 25.0%
! AATTTCATAGTCAGCTAAAA+AGG + chr5_3:19405664-19405683 None:intergenic 25.0%
! TGTATGTTTATGCATTCATA+CGG + chr5_3:19405693-19405712 None:intergenic 25.0%
!! TAATCAATAGTACACTTTTG+TGG + chr5_3:19405822-19405841 None:intergenic 25.0%
! TTGAGATCGATATATATGTT+GGG + chr5_3:19406067-19406086 None:intergenic 25.0%
!! TTTGAGATCGATATATATGT+TGG + chr5_3:19406068-19406087 None:intergenic 25.0%
! GAGAAAAAATTTCAAGAGTT+TGG - chr5_3:19406170-19406189 Msa0803930:intron 25.0%
!!! CTCTTCTTTGTTTTAGATTA+TGG - chr5_3:19406322-19406341 Msa0803930:CDS 25.0%
!!! TTCTTTGTTTTAGATTATGG+CGG - chr5_3:19406325-19406344 Msa0803930:CDS 25.0%
! TTAAATTAAGTGTTAAGGTG+TGG + chr5_3:19404965-19404984 None:intergenic 25.0%
!! CAATAAATACTATGATTTGG+TGG + chr5_3:19405135-19405154 None:intergenic 25.0%
!! TATTTACATGTTTGGAATCA+CGG - chr5_3:19407177-19407196 Msa0803930:CDS 25.0%
! TCAATAATATCAGCAATTTC+AGG + chr5_3:19407472-19407491 None:intergenic 25.0%
! AAATTCACTGATAAGTTAGT+CGG - chr5_3:19407608-19407627 Msa0803930:intron 25.0%
! TTAGAGATAATCTTGTAATC+TGG - chr5_3:19407668-19407687 Msa0803930:CDS 25.0%
! GATGCAAAAGATTAATAATG+GGG + chr5_3:19407800-19407819 None:intergenic 25.0%
! ATTCTATCTTAAAGAGAACT+TGG - chr5_3:19408003-19408022 Msa0803930:CDS 25.0%
!!! ATGTTTTATTATTTCGGTGA+AGG - chr5_3:19408026-19408045 Msa0803930:CDS 25.0%
!!! TGTTTTATTATTTCGGTGAA+GGG - chr5_3:19408027-19408046 Msa0803930:CDS 25.0%
! TGCTTGTCTTGAATAATTTA+AGG - chr5_3:19408197-19408216 Msa0803930:intron 25.0%
!!! AAGATGCACAATTTTTTAGT+TGG + chr5_3:19408279-19408298 None:intergenic 25.0%
! TCATTACAGATATATTGACA+TGG - chr5_3:19408301-19408320 Msa0803930:intron 25.0%
! AAGTATAATATCGCTTGTTT+GGG - chr5_3:19408442-19408461 Msa0803930:intron 25.0%
!!! TCAAATTTTAACAAGCAAAG+CGG + chr5_3:19408553-19408572 None:intergenic 25.0%
! GTGTAAACATGAAAATTTGA+AGG + chr5_3:19408693-19408712 None:intergenic 25.0%
! ATTGTAGATTTCACTATAAC+AGG + chr5_3:19408818-19408837 None:intergenic 25.0%
! ATAATGCTCATTTCTAAGTT+AGG - chr5_3:19409142-19409161 Msa0803930:intron 25.0%
! TTATATTTAGAAAATCACGG+TGG + chr5_3:19409345-19409364 None:intergenic 25.0%
!!! TCTGTTGTTTTTAATTTGAG+CGG - chr5_3:19409382-19409401 Msa0803930:intron 25.0%
! TTAAAAGAAGTCAACAAACA+AGG - chr5_3:19409626-19409645 Msa0803930:intron 25.0%
! GGACTTACATAAATATTTGT+AGG + chr5_3:19409756-19409775 None:intergenic 25.0%
!! GAAGAATTAGTATCTCTTTT+TGG + chr5_3:19409789-19409808 None:intergenic 25.0%
! CTACAATATCAAGAAAAATG+TGG + chr5_3:19409992-19410011 None:intergenic 25.0%
! TCTAGTATCACTCAAAAATT+TGG + chr5_3:19410115-19410134 None:intergenic 25.0%
!!! ATCTTTTGTTTTTCCATTTG+TGG - chr5_3:19410190-19410209 Msa0803930:intron 25.0%
! ATATAACAGACACAAAAGAA+GGG + chr5_3:19411069-19411088 None:intergenic 25.0%
! TCCTAATTATGAAAGTTCAT+CGG + chr5_3:19411156-19411175 None:intergenic 25.0%
!!! ATTTTTCAAAACCAATGGTT+GGG + chr5_3:19411280-19411299 None:intergenic 25.0%
! TAGATAGTATAACACAATTG+AGG + chr5_3:19411403-19411422 None:intergenic 25.0%
!! TTTCAAAAGCTTTTCAGTAA+TGG + chr5_3:19411554-19411573 None:intergenic 25.0%
!! CAATGTTTTCAACTTTCATT+TGG - chr5_3:19411861-19411880 Msa0803930:five_prime_UTR 25.0%
!!! CTCTTCCTTGTTTTAGATTA+TGG - chr5_3:19404699-19404718 Msa0803930:three_prime_UTR 30.0%
!!! TTCCTTGTTTTAGATTATGG+CGG - chr5_3:19404702-19404721 Msa0803930:three_prime_UTR 30.0%
ACAAAGATGAGATAGATAGA+TGG + chr5_3:19405211-19405230 None:intergenic 30.0%
!! GAAAACGTTGATAGTTGTAT+TGG + chr5_3:19405394-19405413 None:intergenic 30.0%
GAAGAAATGATACAAAGCTT+TGG - chr5_3:19405930-19405949 Msa0803930:CDS 30.0%
! GCATATGTGATTAGTTGATA+AGG + chr5_3:19405979-19405998 None:intergenic 30.0%
! TATGCTCAAAGTTCATTTTG+TGG - chr5_3:19405994-19406013 Msa0803930:CDS 30.0%
TCAAAGATGAGATAGATAGA+TGG + chr5_3:19406834-19406853 None:intergenic 30.0%
! TATCTATCTCATCTTTGAGA+TGG - chr5_3:19406836-19406855 Msa0803930:CDS 30.0%
ATTAATATCTGGTGCATCTT+TGG + chr5_3:19407304-19407323 None:intergenic 30.0%
! AGACAATGGAAGGTATATAT+AGG - chr5_3:19407505-19407524 Msa0803930:CDS 30.0%
TTATCTCTAAACCATACCAT+GGG + chr5_3:19407658-19407677 None:intergenic 30.0%
ATTATCTCTAAACCATACCA+TGG + chr5_3:19407659-19407678 None:intergenic 30.0%
TTAACACACAATCAAACAGT+TGG + chr5_3:19407904-19407923 None:intergenic 30.0%
!! GTTTTATTATTTCGGTGAAG+GGG - chr5_3:19408028-19408047 Msa0803930:CDS 30.0%
ATGACAAACAAATACAGTGA+AGG - chr5_3:19408114-19408133 Msa0803930:intron 30.0%
!!! TTTTTTAGTTGGATTCAGTC+TGG + chr5_3:19408268-19408287 None:intergenic 30.0%
CAAGACAATAGTTTCTTTGT+TGG - chr5_3:19408396-19408415 Msa0803930:CDS 30.0%
CAAGTATAATATCGCTTGTT+TGG - chr5_3:19408441-19408460 Msa0803930:intron 30.0%
TGAAATCTACAATCGATGTA+TGG - chr5_3:19408825-19408844 Msa0803930:intron 30.0%
TATAGTCATGAATTCTGTCT+TGG - chr5_3:19408945-19408964 Msa0803930:intron 30.0%
TGTTTCATGAGTTCAACTTA+GGG + chr5_3:19409420-19409439 None:intergenic 30.0%
ATGTTTCATGAGTTCAACTT+AGG + chr5_3:19409421-19409440 None:intergenic 30.0%
AACATATTGCAACTTACAAC+AGG - chr5_3:19409436-19409455 Msa0803930:intron 30.0%
ACTACATCTGCATAATCAAA+AGG + chr5_3:19409542-19409561 None:intergenic 30.0%
! TCTCTTTTTGGATAATGACA+TGG + chr5_3:19409777-19409796 None:intergenic 30.0%
ACAAAATGAGTTAATCTCTG+TGG + chr5_3:19410349-19410368 None:intergenic 30.0%
TTTGGTGAATCTCAAGAATA+AGG - chr5_3:19410451-19410470 Msa0803930:intron 30.0%
CTAATCATTTGCGTATTAGT+TGG - chr5_3:19410548-19410567 Msa0803930:intron 30.0%
!! AAACATCCATTTTTGTGGAT+CGG + chr5_3:19410650-19410669 None:intergenic 30.0%
!! AGATGAAACATCCATTTTTG+TGG + chr5_3:19410655-19410674 None:intergenic 30.0%
!!! AACTTTTTTCAGGGTATTGA+TGG - chr5_3:19410725-19410744 Msa0803930:intron 30.0%
GTTGATCTTGATAAATCTTG+TGG - chr5_3:19410907-19410926 Msa0803930:intron 30.0%
TGATAAATCTTGTGGATTTC+AGG - chr5_3:19410915-19410934 Msa0803930:intron 30.0%
GATATAACAGACACAAAAGA+AGG + chr5_3:19411070-19411089 None:intergenic 30.0%
ACCGATGAACTTTCATAATT+AGG - chr5_3:19411152-19411171 Msa0803930:intron 30.0%
!! GATTTTTCAAAACCAATGGT+TGG + chr5_3:19411281-19411300 None:intergenic 30.0%
!! GCTTGATTTTTCAAAACCAA+TGG + chr5_3:19411285-19411304 None:intergenic 30.0%
GAAAAATGAAAGTTTCCATC+AGG - chr5_3:19411323-19411342 Msa0803930:intron 30.0%
TGACATAAATGTATACCTGA+TGG + chr5_3:19411341-19411360 None:intergenic 30.0%
CACATCATATTATGTTGATG+AGG - chr5_3:19411363-19411382 Msa0803930:intron 30.0%
ACTAGTAATCTGTTAACCTT+TGG - chr5_3:19411474-19411493 Msa0803930:intron 30.0%
!! TCAGTAATGGACAAGAAAAA+CGG + chr5_3:19411541-19411560 None:intergenic 30.0%
!! TGATCGGTTTTTCTGATTAA+TGG - chr5_3:19411676-19411695 Msa0803930:five_prime_UTR 30.0%
! GTTTTTCTGATTAATGGAAG+AGG - chr5_3:19411682-19411701 Msa0803930:five_prime_UTR 30.0%
!! TATAGCAGATGAAAAGCATT+AGG - chr5_3:19411714-19411733 Msa0803930:intron 30.0%
! TTCATGATAGCTTCTGAAAA+TGG + chr5_3:19412008-19412027 None:intergenic 30.0%
AATTAGTTGAAACCAGCTTA+TGG - chr5_3:19412038-19412057 Msa0803930:five_prime_UTR 30.0%
AGACTGTATAGGAGAATTTA+TGG + chr5_3:19412082-19412101 None:intergenic 30.0%
! TTCCGCCATAATCTAAAACA+AGG + chr5_3:19404707-19404726 None:intergenic 35.0%
GTTAAGGTGTGGAGAATTAT+AGG + chr5_3:19404954-19404973 None:intergenic 35.0%
TTTACATACTCTGTCCATGT+CGG + chr5_3:19405366-19405385 None:intergenic 35.0%
AAACTGTCAACGTTTCAGAA+AGG - chr5_3:19405425-19405444 Msa0803930:intron 35.0%
ACACAAAGTAAGCATGAAGT+AGG - chr5_3:19405864-19405883 Msa0803930:intron 35.0%
! AGGTAAAGTGTTCTCATTAG+TGG - chr5_3:19405884-19405903 Msa0803930:intron 35.0%
! TTCATTTTGTGGCCATGAAA+TGG - chr5_3:19406005-19406024 Msa0803930:CDS 35.0%
TGCTTCTTCTGTTTACTACA+AGG - chr5_3:19406923-19406942 Msa0803930:intron 35.0%
CAAAGAGAATTCACGTGTTT+CGG - chr5_3:19407110-19407129 Msa0803930:CDS 35.0%
CTTGTTAGAAAAGAGACTTG+TGG - chr5_3:19407330-19407349 Msa0803930:intron 35.0%
AAAGAGACTTGTGGATTTGA+TGG - chr5_3:19407339-19407358 Msa0803930:intron 35.0%
!! TTTGATGGTTCTGATTGTGA+AGG - chr5_3:19407354-19407373 Msa0803930:intron 35.0%
AGTGGAGAATTCAATTGCTT+TGG + chr5_3:19407436-19407455 None:intergenic 35.0%
ATCAGAGATGTAGACACTAT+TGG - chr5_3:19407769-19407788 Msa0803930:intron 35.0%
!! CAGCTCTAAAGAAAACAGAT+AGG + chr5_3:19407836-19407855 None:intergenic 35.0%
!!! CTATCTGTTTTCTTTAGAGC+TGG - chr5_3:19407834-19407853 Msa0803930:intron 35.0%
! TGTTGTGAAGAAGCATGATA+TGG - chr5_3:19407941-19407960 Msa0803930:intron 35.0%
GGTAGACGAAATTTCTCATT+AGG - chr5_3:19407962-19407981 Msa0803930:intron 35.0%
! AGAGAAGTGAAGTTTTCTGA+TGG + chr5_3:19408066-19408085 None:intergenic 35.0%
AAATACAGTGAAGGTTATCC+TGG - chr5_3:19408123-19408142 Msa0803930:intron 35.0%
TATCCTGGAGCAAGATATTA+CGG - chr5_3:19408138-19408157 Msa0803930:intron 35.0%
GATTCAGTCTGGTACTTAAA+AGG + chr5_3:19408257-19408276 None:intergenic 35.0%
! TAAGGTTTGAAATCTGCACT+TGG - chr5_3:19408527-19408546 Msa0803930:intron 35.0%
GAAACCTCATGATAGAATCA+TGG - chr5_3:19408722-19408741 Msa0803930:intron 35.0%
TCTACAATCGATGTATGGAT+TGG - chr5_3:19408830-19408849 Msa0803930:intron 35.0%
!! TGCAGATATCTTTTTGGTGT+CGG + chr5_3:19409029-19409048 None:intergenic 35.0%
! AGAGACTGCAGATATCTTTT+TGG + chr5_3:19409035-19409054 None:intergenic 35.0%
TGAGACAATGCCATATAGAT+TGG - chr5_3:19409063-19409082 Msa0803930:intron 35.0%
GTGCTTTCATCCAATCTATA+TGG + chr5_3:19409076-19409095 None:intergenic 35.0%
! TATAGATTGGATGAAAGCAC+AGG - chr5_3:19409076-19409095 Msa0803930:intron 35.0%
! AGGATACATTGATTATGACC+AGG - chr5_3:19409096-19409115 Msa0803930:intron 35.0%
AAAGAAACTGCAAACATACC+TGG + chr5_3:19409117-19409136 None:intergenic 35.0%
! GGTATGTTTGCAGTTTCTTT+TGG - chr5_3:19409117-19409136 Msa0803930:intron 35.0%
!!! AATTAGTTTTGGCCTGAAGA+GGG + chr5_3:19409250-19409269 None:intergenic 35.0%
ATAATCATACAGACGTGCAT+AGG + chr5_3:19409289-19409308 None:intergenic 35.0%
CTGCATAATCAAAAGGTGAA+GGG + chr5_3:19409535-19409554 None:intergenic 35.0%
TCTGCATAATCAAAAGGTGA+AGG + chr5_3:19409536-19409555 None:intergenic 35.0%
!!! AGCTATGATCTTTTTCAGGA+AGG - chr5_3:19409601-19409620 Msa0803930:intron 35.0%
!!! GCTATGATCTTTTTCAGGAA+GGG - chr5_3:19409602-19409621 Msa0803930:intron 35.0%
ATCAAGAAAAATGTGGACAG+TGG + chr5_3:19409985-19410004 None:intergenic 35.0%
TTAAGAAAAGGGTTTGTCTG+AGG - chr5_3:19410071-19410090 Msa0803930:intron 35.0%
TAAGAAAAGGGTTTGTCTGA+GGG - chr5_3:19410072-19410091 Msa0803930:intron 35.0%
! GTTTTTCCATTTGTGGATTC+AGG - chr5_3:19410197-19410216 Msa0803930:intron 35.0%
TCTTGGTATGCTTTATACTC+TGG + chr5_3:19410231-19410250 None:intergenic 35.0%
ATGTCAGTCAACACAACATA+AGG - chr5_3:19410305-19410324 Msa0803930:intron 35.0%
TGTCAGTCAACACAACATAA+GGG - chr5_3:19410306-19410325 Msa0803930:intron 35.0%
! AAAGGTTATGAGCTTGTTTC+TGG - chr5_3:19410407-19410426 Msa0803930:intron 35.0%
!! GACTGAGAATCATCTAGTTT+TGG - chr5_3:19410433-19410452 Msa0803930:intron 35.0%
CTCGACAATGCTTATATGTA+TGG + chr5_3:19410496-19410515 None:intergenic 35.0%
AGTTCGAGAGAACATTGTTA+TGG - chr5_3:19410612-19410631 Msa0803930:intron 35.0%
GCTAATAAAAACACTGTTCC+TGG - chr5_3:19410788-19410807 Msa0803930:intron 35.0%
CAAGATCAACTAGTTGAACA+AGG + chr5_3:19410897-19410916 None:intergenic 35.0%
TTTCGATGCATCTGTGAATT+TGG - chr5_3:19410998-19411017 Msa0803930:intron 35.0%
!! GAATTTGGCTTTGAAGATCA+AGG - chr5_3:19411013-19411032 Msa0803930:intron 35.0%
ATATTAGCTGTATGGTTGCT+TGG - chr5_3:19411107-19411126 Msa0803930:intron 35.0%
AGTAATCTGTTAACCTTTGG+TGG - chr5_3:19411477-19411496 Msa0803930:intron 35.0%
AATTTCAGAACTTCCACCAA+AGG + chr5_3:19411493-19411512 None:intergenic 35.0%
TAAGATCAAACTTCTTCCAC+TGG - chr5_3:19411584-19411603 Msa0803930:five_prime_UTR 35.0%
!! GACGTATTATGTTTGCTATG+TGG - chr5_3:19411617-19411636 Msa0803930:five_prime_UTR 35.0%
ATCAGAAAAACCGATCACAA+TGG + chr5_3:19411673-19411692 None:intergenic 35.0%
TTTCTGATTAATGGAAGAGG+AGG - chr5_3:19411685-19411704 Msa0803930:five_prime_UTR 35.0%
! ACTTTCATTTGGGTTCTGTT+TGG - chr5_3:19411872-19411891 Msa0803930:five_prime_UTR 35.0%
ACAGTAGTTGTCGAGAATCT+GGG + chr5_3:19405312-19405331 None:intergenic 40.0%
AACAGTAGTTGTCGAGAATC+TGG + chr5_3:19405313-19405332 None:intergenic 40.0%
AGTGCATCATAAATCCGACA+TGG - chr5_3:19405349-19405368 Msa0803930:intron 40.0%
AGTGTTCTCATTAGTGGAAG+TGG - chr5_3:19405890-19405909 Msa0803930:intron 40.0%
GTTAAGGTGTGGAGAATTAC+AGG + chr5_3:19406572-19406591 None:intergenic 40.0%
!! TCTCATCTTTGAGATGGCAA+TGG - chr5_3:19406842-19406861 Msa0803930:CDS 40.0%
TTGTCATAGACAGCTTCATC+AGG + chr5_3:19407093-19407112 None:intergenic 40.0%
CTGGTGCATCTTTGGATTAA+CGG + chr5_3:19407296-19407315 None:intergenic 40.0%
GCAATTGAATTCTCCACTTG+AGG - chr5_3:19407438-19407457 Msa0803930:CDS 40.0%
TCAGGATCAATTTCCTCAAG+TGG + chr5_3:19407454-19407473 None:intergenic 40.0%
AGCTTGAGAAAGCTAGACAA+TGG - chr5_3:19407491-19407510 Msa0803930:CDS 40.0%
TGAGAAAGCTAGACAATGGA+AGG - chr5_3:19407495-19407514 Msa0803930:CDS 40.0%
ACTGATAAGTTAGTCGGAAG+AGG - chr5_3:19407614-19407633 Msa0803930:intron 40.0%
CTATCTGTTATGCAAGCTGT+TGG - chr5_3:19408084-19408103 Msa0803930:intron 40.0%
! TCTCTCATGAGCTTTTCTGA+AGG - chr5_3:19408578-19408597 Msa0803930:intron 40.0%
TTTGAAGGTGAACCAGACAA+AGG + chr5_3:19408678-19408697 None:intergenic 40.0%
AGTGCCATGATTCTATCATG+AGG + chr5_3:19408729-19408748 None:intergenic 40.0%
ACATCTTTCTCATGGTTACC+AGG - chr5_3:19408767-19408786 Msa0803930:intron 40.0%
TTTCTCATGGTTACCAGGTA+TGG - chr5_3:19408772-19408791 Msa0803930:intron 40.0%
AGATGATAGTTGACCATACC+TGG + chr5_3:19408788-19408807 None:intergenic 40.0%
!! TCGATGTATGGATTGGCTTA+TGG - chr5_3:19408837-19408856 Msa0803930:intron 40.0%
!!! CAATTAGTTTTGGCCTGAAG+AGG + chr5_3:19409251-19409270 None:intergenic 40.0%
AGGCCAAAACTAATTGTTGC+TGG - chr5_3:19409255-19409274 Msa0803930:CDS 40.0%
!! GCACCAGCAACAATTAGTTT+TGG + chr5_3:19409261-19409280 None:intergenic 40.0%
GCAAGGTAACACATTCACAA+GGG - chr5_3:19409319-19409338 Msa0803930:intron 40.0%
AGCTGTGATGTTAGCAGATA+TGG - chr5_3:19409475-19409494 Msa0803930:intron 40.0%
AAAAAGATCATAGCTCCACG+TGG + chr5_3:19409596-19409615 None:intergenic 40.0%
! GTGGAGCTATGATCTTTTTC+AGG - chr5_3:19409597-19409616 Msa0803930:intron 40.0%
! AATTTTGTTCAGGCCTTCAG+GGG + chr5_3:19409664-19409683 None:intergenic 40.0%
! GAATTTTGTTCAGGCCTTCA+GGG + chr5_3:19409665-19409684 None:intergenic 40.0%
! TGAATTTTGTTCAGGCCTTC+AGG + chr5_3:19409666-19409685 None:intergenic 40.0%
!! GAAGGTGTTCTATGACTATG+AGG - chr5_3:19409819-19409838 Msa0803930:CDS 40.0%
CAGCTAAACCAGTAATGGTA+TGG + chr5_3:19409894-19409913 None:intergenic 40.0%
AAGAAAAGGGTTTGTCTGAG+GGG - chr5_3:19410073-19410092 Msa0803930:intron 40.0%
TGAGGGGTTTATTTGAAGAG+TGG - chr5_3:19410089-19410108 Msa0803930:intron 40.0%
TTGTAGCCTGAATCCACAAA+TGG + chr5_3:19410206-19410225 None:intergenic 40.0%
GTATAAAGCATACCAAGAGC+AGG - chr5_3:19410233-19410252 Msa0803930:intron 40.0%
CAATTGCGCAAAATTTGCAC+AGG - chr5_3:19410263-19410282 Msa0803930:intron 40.0%
TTAATCTCTGTGGTCCAACA+AGG + chr5_3:19410339-19410358 None:intergenic 40.0%
!! GTTATGAGCTTGTTTCTGGT+GGG - chr5_3:19410411-19410430 Msa0803930:intron 40.0%
TGTATGGTCAAAGAGTTGTC+AGG + chr5_3:19410480-19410499 None:intergenic 40.0%
! ACGCAAATGATTAGCACTGA+AGG + chr5_3:19410542-19410561 None:intergenic 40.0%
TTGTGTCCGATCCACAAAAA+TGG - chr5_3:19410641-19410660 Msa0803930:intron 40.0%
AACTCCTGCTCTTACTTCAA+GGG - chr5_3:19410938-19410957 Msa0803930:intron 40.0%
CACTGCTGATATTAGCTGTA+TGG - chr5_3:19411099-19411118 Msa0803930:intron 40.0%
GCAAAACAATTCCCAACCAT+TGG - chr5_3:19411266-19411285 Msa0803930:intron 40.0%
TACGTCAGAGAATAATCCAG+TGG + chr5_3:19411603-19411622 None:intergenic 40.0%
!! TTATGTTTGCTATGTGGCAG+TGG - chr5_3:19411623-19411642 Msa0803930:five_prime_UTR 40.0%
CTCATTAGTGGAAGTGGAAG+TGG - chr5_3:19405896-19405915 Msa0803930:intron 45.0%
!! CTTTGAGATGGCAATGGCAA+TGG - chr5_3:19406848-19406867 Msa0803930:CDS 45.0%
!! ACAGAAGAAGCACTGAAGAG+AGG + chr5_3:19406915-19406934 None:intergenic 45.0%
AACAAAATCACGTGTCACCG+CGG + chr5_3:19407217-19407236 None:intergenic 45.0%
TGAATTTAGCATGCCTCCCA+TGG - chr5_3:19407639-19407658 Msa0803930:intron 45.0%
TCTCTAAACCATACCATGGG+AGG + chr5_3:19407655-19407674 None:intergenic 45.0%
TATTATTTCGGTGAAGGGGC+TGG - chr5_3:19408032-19408051 Msa0803930:CDS 45.0%
ATCCAACCGAAATGCTTCCA+AGG + chr5_3:19408351-19408370 None:intergenic 45.0%
TTCGGTTGGATCCAGCTAAA+TGG - chr5_3:19408360-19408379 Msa0803930:intron 45.0%
TCGGTTGGATCCAGCTAAAT+GGG - chr5_3:19408361-19408380 Msa0803930:intron 45.0%
TTCTTACCTCCCCATTTAGC+TGG + chr5_3:19408374-19408393 None:intergenic 45.0%
! AATCAGCAAAGAGCACGCTA+AGG - chr5_3:19408509-19408528 Msa0803930:intron 45.0%
TGCACGTTCACTGCAAATCA+GGG + chr5_3:19408654-19408673 None:intergenic 45.0%
GAGAAAGATGTCCTCCATGA+GGG + chr5_3:19408758-19408777 None:intergenic 45.0%
TGAGAAAGATGTCCTCCATG+AGG + chr5_3:19408759-19408778 None:intergenic 45.0%
CATGGAGGACATCTTTCTCA+TGG - chr5_3:19408759-19408778 Msa0803930:intron 45.0%
AGAAATCTGCTACCCTCTTC+AGG - chr5_3:19409235-19409254 Msa0803930:intron 45.0%
TGATTATGCACGCATTCGCA+AGG - chr5_3:19409302-19409321 Msa0803930:CDS 45.0%
CGCAAGGTAACACATTCACA+AGG - chr5_3:19409318-19409337 Msa0803930:intron 45.0%
GCAGATATGGCACATATCAG+TGG - chr5_3:19409488-19409507 Msa0803930:intron 45.0%
TATGGCACATATCAGTGGAC+TGG - chr5_3:19409493-19409512 Msa0803930:intron 45.0%
! ACGAAGTGACTTGTGAGTTG+TGG + chr5_3:19409570-19409589 None:intergenic 45.0%
ACAACTCACAAGTCACTTCG+TGG - chr5_3:19409569-19409588 Msa0803930:intron 45.0%
ATCAATCAAGCTGTCTTCCC+TGG - chr5_3:19409847-19409866 Msa0803930:CDS 45.0%
CCAGTAATGGTATGGTTGTG+AGG + chr5_3:19409886-19409905 None:intergenic 45.0%
CCTCACAACCATACCATTAC+TGG - chr5_3:19409883-19409902 Msa0803930:CDS 45.0%
CGCAACAGCTAAACCAGTAA+TGG + chr5_3:19409899-19409918 None:intergenic 45.0%
TTTAGCTGTTGCGTTGAAGC+AGG - chr5_3:19409906-19409925 Msa0803930:intron 45.0%
AATTGCTGAGAACCTGCTCT+TGG + chr5_3:19410248-19410267 None:intergenic 45.0%
AGTCAACACAACATAAGGGC+TGG - chr5_3:19410310-19410329 Msa0803930:intron 45.0%
!! GGTTATGAGCTTGTTTCTGG+TGG - chr5_3:19410410-19410429 Msa0803930:intron 45.0%
TTCCAACACCTTCTCAACTC+TGG + chr5_3:19410753-19410772 None:intergenic 45.0%
GAACTCCTGCTCTTACTTCA+AGG - chr5_3:19410937-19410956 Msa0803930:intron 45.0%
ACTCCTGCTCTTACTTCAAG+GGG - chr5_3:19410939-19410958 Msa0803930:intron 45.0%
AATCCCCTTGAAGTAAGAGC+AGG + chr5_3:19410945-19410964 None:intergenic 45.0%
AAGATCAAGGCAGAGAGCAA+AGG - chr5_3:19411026-19411045 Msa0803930:intron 45.0%
AATCTCTGACTGCATGTAGG+AGG + chr5_3:19411216-19411235 None:intergenic 45.0%
GGAAATCTCTGACTGCATGT+AGG + chr5_3:19411219-19411238 None:intergenic 45.0%
CTCAACATCATGACGAAGCT+TGG + chr5_3:19411240-19411259 None:intergenic 45.0%
CAAGCTTCGTCATGATGTTG+AGG - chr5_3:19411238-19411257 Msa0803930:intron 45.0%
GGCAGTGGTGGTAAAGATTA+TGG - chr5_3:19411638-19411657 Msa0803930:five_prime_UTR 45.0%
GTCAAGCAGTCCATTGTGAT+CGG - chr5_3:19411660-19411679 Msa0803930:five_prime_UTR 45.0%
!! GCAGATGAAAAGCATTAGGC+TGG - chr5_3:19411718-19411737 Msa0803930:intron 45.0%
CTCATGACATGTCCATAAGC+TGG + chr5_3:19412053-19412072 None:intergenic 45.0%
!!! TTTTGTAAATTTTAAAATTT+TGG - chr5_3:19404768-19404787 Msa0803930:three_prime_UTR 5.0%
!! ATGAAATAATAAAAAAAAAT+TGG + chr5_3:19405061-19405080 None:intergenic 5.0%
!!! TTTTGTAAATTTTAAAATTT+TGG - chr5_3:19404768-19404787 Msa0803930:three_prime_UTR 5.0%
!! TGAATAAAATAATATAATTT+AGG + chr5_3:19406656-19406675 None:intergenic 5.0%
!! ATGAAATAATAAAAAAAAAT+TGG + chr5_3:19405061-19405080 None:intergenic 5.0%
!!! AGTTTTTAAAATTTTTAAAA+TGG - chr5_3:19410010-19410029 Msa0803930:intron 5.0%
AGTGGAAGTGGAAGTGGAAG+TGG - chr5_3:19405902-19405921 Msa0803930:intron 50.0%
AGTGGAAGTGGAAGTGGAAG+TGG - chr5_3:19405902-19405921 Msa0803930:intron 50.0%
TATCCGCGACAGCCATTTCA+TGG + chr5_3:19406020-19406039 None:intergenic 50.0%
ATGAAATGGCTGTCGCGGAT+AGG - chr5_3:19406019-19406038 Msa0803930:intron 50.0%
TGAAATGGCTGTCGCGGATA+GGG - chr5_3:19406020-19406039 Msa0803930:intron 50.0%
CAATGGCAATGGCTCTTCGT+AGG - chr5_3:19406859-19406878 Msa0803930:CDS 50.0%
CGGTGAGTTTGACAAAACCG+CGG - chr5_3:19407197-19407216 Msa0803930:CDS 50.0%
TTAGCATGCCTCCCATGGTA+TGG - chr5_3:19407644-19407663 Msa0803930:CDS 50.0%
CCTCCGTAATATCTTGCTCC+AGG + chr5_3:19408144-19408163 None:intergenic 50.0%
CCTGGAGCAAGATATTACGG+AGG - chr5_3:19408141-19408160 Msa0803930:intron 50.0%
! ACTATGCCAAAAGCGTGCCT+TGG - chr5_3:19408331-19408350 Msa0803930:intron 50.0%
! ATGCTTCCAAGGCACGCTTT+TGG + chr5_3:19408340-19408359 None:intergenic 50.0%
!! AGCGTGCCTTGGAAGCATTT+CGG - chr5_3:19408342-19408361 Msa0803930:intron 50.0%
!! TGCCTTGGAAGCATTTCGGT+TGG - chr5_3:19408346-19408365 Msa0803930:intron 50.0%
CGGTTGGATCCAGCTAAATG+GGG - chr5_3:19408362-19408381 Msa0803930:intron 50.0%
TTGGATCCAGCTAAATGGGG+AGG - chr5_3:19408365-19408384 Msa0803930:intron 50.0%
GCACGTTCACTGCAAATCAG+GGG + chr5_3:19408653-19408672 None:intergenic 50.0%
CTGCACGTTCACTGCAAATC+AGG + chr5_3:19408655-19408674 None:intergenic 50.0%
ATGGCACTTGATCTCCCTCA+TGG - chr5_3:19408741-19408760 Msa0803930:intron 50.0%
ATACCACACACACGCTCAGT+CGG + chr5_3:19410142-19410161 None:intergenic 50.0%
!! ATAAGGGCTGGTCTCCTTGT+TGG - chr5_3:19410322-19410341 Msa0803930:intron 50.0%
!! TTGCAGGCTCTGAGTGAGAA+AGG - chr5_3:19410389-19410408 Msa0803930:intron 50.0%
TGATGGCTCCAGAGTTGAGA+AGG - chr5_3:19410742-19410761 Msa0803930:intron 50.0%
! CTCCAGAGTTGAGAAGGTGT+TGG - chr5_3:19410748-19410767 Msa0803930:intron 50.0%
TCCTGGAGATGTGTCTGCTA+TGG - chr5_3:19410805-19410824 Msa0803930:intron 50.0%
ACCATAGCAGACACATCTCC+AGG + chr5_3:19410809-19410828 None:intergenic 50.0%
GATGTGTCTGCTATGGTTCC+TGG - chr5_3:19410812-19410831 Msa0803930:intron 50.0%
CTATGGTTCCTGGTGGTATC+AGG - chr5_3:19410822-19410841 Msa0803930:intron 50.0%
GTTCCTGGTGGTATCAGGAT+GGG - chr5_3:19410827-19410846 Msa0803930:intron 50.0%
ATACCCATCCTGATACCACC+AGG + chr5_3:19410833-19410852 None:intergenic 50.0%
TACTTCAAGGGGATTCGTCG+AGG - chr5_3:19410950-19410969 Msa0803930:intron 50.0%
CGTCGAGGAGGATTTCGTTA+AGG - chr5_3:19410965-19410984 Msa0803930:intron 50.0%
!! TGTTTGCTATGTGGCAGTGG+TGG - chr5_3:19411626-19411645 Msa0803930:five_prime_UTR 50.0%
TGGCCATGAAATGGCTGTCG+CGG - chr5_3:19406014-19406033 Msa0803930:intron 55.0%
! TGTCGCGGATAGGGCATTTC+TGG - chr5_3:19406029-19406048 Msa0803930:intron 55.0%
GTGAACGTGCAGCCTTTGTC+TGG - chr5_3:19408663-19408682 Msa0803930:CDS 55.0%
GCACTTGATCTCCCTCATGG+AGG - chr5_3:19408744-19408763 Msa0803930:intron 55.0%
!! ATCAGTGGACTGGTTGCAGC+TGG - chr5_3:19409503-19409522 Msa0803930:intron 55.0%
AAGTCACTTCGTGGACCACG+TGG - chr5_3:19409578-19409597 Msa0803930:intron 55.0%
! ATACCGACTGAGCGTGTGTG+TGG - chr5_3:19410136-19410155 Msa0803930:intron 55.0%
GTGTCTGCTATGGTTCCTGG+TGG - chr5_3:19410815-19410834 Msa0803930:intron 55.0%
GGTTCCTGGTGGTATCAGGA+TGG - chr5_3:19410826-19410845 Msa0803930:intron 55.0%
TTCAAGGGGATTCGTCGAGG+AGG - chr5_3:19410953-19410972 Msa0803930:intron 55.0%
GCTGTCTTCCCTGGACTGCA+AGG - chr5_3:19409856-19409875 Msa0803930:CDS 60.0%
GTCTTCCCTGGACTGCAAGG+TGG - chr5_3:19409859-19409878 Msa0803930:CDS 60.0%
GAGGACCACCTTGCAGTCCA+GGG + chr5_3:19409867-19409886 None:intergenic 60.0%
TGAGGACCACCTTGCAGTCC+AGG + chr5_3:19409868-19409887 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 19404656 19412105 19404656 ID=Msa0803930;Name=Msa0803930
chr5_3 mRNA 19404656 19412105 19404656 ID=Msa0803930-mRNA-1;Parent=Msa0803930;Name=Msa0803930-mRNA-1;_AED=0.10;_eAED=0.10;_QI=559|0.94|0.94|1|0.88|0.88|18|414|530
chr5_3 exon 19404656 19405118 19404656 ID=Msa0803930-mRNA-1:exon:7979;Parent=Msa0803930-mRNA-1
chr5_3 exon 19405452 19405587 19405452 ID=Msa0803930-mRNA-1:exon:7978;Parent=Msa0803930-mRNA-1
chr5_3 exon 19405714 19405824 19405714 ID=Msa0803930-mRNA-1:exon:7977;Parent=Msa0803930-mRNA-1
chr5_3 exon 19405913 19406024 19405913 ID=Msa0803930-mRNA-1:exon:7976;Parent=Msa0803930-mRNA-1
chr5_3 exon 19406289 19406366 19406289 ID=Msa0803930-mRNA-1:exon:7975;Parent=Msa0803930-mRNA-1
chr5_3 exon 19406477 19406542 19406477 ID=Msa0803930-mRNA-1:exon:7974;Parent=Msa0803930-mRNA-1
chr5_3 exon 19406834 19406938 19406834 ID=Msa0803930-mRNA-1:exon:7973;Parent=Msa0803930-mRNA-1
chr5_3 exon 19407106 19407303 19407106 ID=Msa0803930-mRNA-1:exon:7972;Parent=Msa0803930-mRNA-1
chr5_3 exon 19407438 19407530 19407438 ID=Msa0803930-mRNA-1:exon:7971;Parent=Msa0803930-mRNA-1
chr5_3 exon 19407644 19407736 19407644 ID=Msa0803930-mRNA-1:exon:7970;Parent=Msa0803930-mRNA-1
chr5_3 exon 19407973 19408097 19407973 ID=Msa0803930-mRNA-1:exon:7969;Parent=Msa0803930-mRNA-1
chr5_3 exon 19408375 19408451 19408375 ID=Msa0803930-mRNA-1:exon:7968;Parent=Msa0803930-mRNA-1
chr5_3 exon 19408592 19408713 19408592 ID=Msa0803930-mRNA-1:exon:7967;Parent=Msa0803930-mRNA-1
chr5_3 exon 19409245 19409331 19409245 ID=Msa0803930-mRNA-1:exon:7966;Parent=Msa0803930-mRNA-1
chr5_3 exon 19409630 19409680 19409630 ID=Msa0803930-mRNA-1:exon:7965;Parent=Msa0803930-mRNA-1
chr5_3 exon 19409817 19409906 19409817 ID=Msa0803930-mRNA-1:exon:7964;Parent=Msa0803930-mRNA-1
chr5_3 exon 19411524 19411720 19411524 ID=Msa0803930-mRNA-1:exon:7963;Parent=Msa0803930-mRNA-1
chr5_3 exon 19411744 19412105 19411744 ID=Msa0803930-mRNA-1:exon:7962;Parent=Msa0803930-mRNA-1
chr5_3 five_prime_UTR 19411744 19412105 19411744 ID=Msa0803930-mRNA-1:five_prime_utr;Parent=Msa0803930-mRNA-1
chr5_3 five_prime_UTR 19411524 19411720 19411524 ID=Msa0803930-mRNA-1:five_prime_utr;Parent=Msa0803930-mRNA-1
chr5_3 CDS 19409817 19409906 19409817 ID=Msa0803930-mRNA-1:cds;Parent=Msa0803930-mRNA-1
chr5_3 CDS 19409630 19409680 19409630 ID=Msa0803930-mRNA-1:cds;Parent=Msa0803930-mRNA-1
chr5_3 CDS 19409245 19409331 19409245 ID=Msa0803930-mRNA-1:cds;Parent=Msa0803930-mRNA-1
chr5_3 CDS 19408592 19408713 19408592 ID=Msa0803930-mRNA-1:cds;Parent=Msa0803930-mRNA-1
chr5_3 CDS 19408375 19408451 19408375 ID=Msa0803930-mRNA-1:cds;Parent=Msa0803930-mRNA-1
chr5_3 CDS 19407973 19408097 19407973 ID=Msa0803930-mRNA-1:cds;Parent=Msa0803930-mRNA-1
chr5_3 CDS 19407644 19407736 19407644 ID=Msa0803930-mRNA-1:cds;Parent=Msa0803930-mRNA-1
chr5_3 CDS 19407438 19407530 19407438 ID=Msa0803930-mRNA-1:cds;Parent=Msa0803930-mRNA-1
chr5_3 CDS 19407106 19407303 19407106 ID=Msa0803930-mRNA-1:cds;Parent=Msa0803930-mRNA-1
chr5_3 CDS 19406834 19406938 19406834 ID=Msa0803930-mRNA-1:cds;Parent=Msa0803930-mRNA-1
chr5_3 CDS 19406477 19406542 19406477 ID=Msa0803930-mRNA-1:cds;Parent=Msa0803930-mRNA-1
chr5_3 CDS 19406289 19406366 19406289 ID=Msa0803930-mRNA-1:cds;Parent=Msa0803930-mRNA-1
chr5_3 CDS 19405913 19406024 19405913 ID=Msa0803930-mRNA-1:cds;Parent=Msa0803930-mRNA-1
chr5_3 CDS 19405714 19405824 19405714 ID=Msa0803930-mRNA-1:cds;Parent=Msa0803930-mRNA-1
chr5_3 CDS 19405452 19405587 19405452 ID=Msa0803930-mRNA-1:cds;Parent=Msa0803930-mRNA-1
chr5_3 CDS 19405070 19405118 19405070 ID=Msa0803930-mRNA-1:cds;Parent=Msa0803930-mRNA-1
chr5_3 three_prime_UTR 19404656 19405069 19404656 ID=Msa0803930-mRNA-1:three_prime_utr;Parent=Msa0803930-mRNA-1
Gene Sequence

>Msa0803930

ATGGCAATGGCAATGGCTCTTCGTAGGCTTTCTTCTTCAATTAACAAATCTTCACGTCCTCTCTTCAGTGCTTCTTCTGTTTACTACAAGTCATCTTTGCCTGATGAAGCTGTCTATGACAAAGAGAATTCACGTGTTTCGTGGCCAAAGCAATTGAATTCTCCACTTGAGGAAATTGATCCTGAAATTGCTGATATTATTGAGCTTGAGAAAGCTAGACAATGGAAGGGGCTGGAACTGATTCCATCAGAAAACTTCACTTCTCTATCTGTTATGCAAGCTGTTGGATCTATCATGACAAACAAATACAGTGAAGGTTATCCTGGAGCAAGATATTACGGAGGAAATGAATATATTGACATGGCAGAAACACTATGCCAAAAGCGTGCCTTGGAAGCATTTCGGTTGGATCCAGCTAAATGGGGAGTGAACGTGCAGCCTTTGTCTGGTTCACCTTCAAATTTTCATGTTTACACTGCATTGTTGAAACCTCATGATAGAATCATGGCACTTGATCTCCCTCATGGAGGACATCTTTCTCATGGTTACCAGACCGACACCAAAAAGATATCTGCAGTCTCTATATTTTTTGAGACAATGCCATATAGATTGGATGAAAGCACAGGATACATTGATTATGACCAGCTAGAGAAATCTGCTACCCTCTTCAGGCCAAAACTAATTGTTGCTGGTGCTAGTGCCTATGCACGTCTGTATGATTATGCACGCATTCGCAAGGTGTGCGATAAACAAAAAGCTGTGATGTTAGCAGATATGGCACATATCAGTGGACTGGTTGCAGCTGGTGTTATCCCTTCACCTTTTGATTATGCAGATGTAGTGACTACCACAACTCACAAGTCACTTCGTGGACCACGTGGAGCTATGATCTTTTTCAGGAAGGGATTAAAAGAAGTCAACAAACAAGGAAAAGAGGTGTTCTATGACTATGAGGACAAAATCAATCAAGCTGTCTTCCCTGGACTGCAAGGTGGTCCTCACAACCATACCATTACTGGTTTAGCTGTTGCGTTGAAGCAGGCTACAACTCCAGAGTATAAAGCATACCAAGAGCAGGTTCTCAGCAATTGCGCAAAATTTGCACAGGCTCTGAGTGAGAAAGGTTATGAGCTTGTTTCTGGTGGGACTGAGAATCATCTAGTTTTGGTGAATCTCAAGAATAAGGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTACATATTGCAGCTAATAAAAACACTGTTCCTGGAGATGTGTCTGCTATGGTTCCTGGTGGTATCAGGATGGGAACTCCTGCTCTTACTTCAAGGGGATTCGTCGAGGAGGATTTCGTTAAGGTAGCAGAGTATTTCGATGCATCTGTGAATTTGGCTTTGAAGATCAAGGCAGAGAGCAAAGGAACAAAATTAAAGGACTTTGTAGAAACATTGCAATCATCCTCCTACATGCAGTCAGAGATTTCCAAGCTTCGTCATGATGTTGAGGAGTTCGCAAAACAATTCCCAACCATTGGTTTTGAAAAATCAAGCATGAATGGTGGTAAAGATTATGGTCAAGCAGTCCATTGTGATCGGTTTTTCTGA

Protein sequence

>Msa0803930

MAMAMALRRLSSSINKSSRPLFSASSVYYKSSLPDEAVYDKENSRVSWPKQLNSPLEEIDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSIMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFHVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAVMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCAKFAQALSEKGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDASVNLALKIKAESKGTKLKDFVETLQSSSYMQSEISKLRHDVEEFAKQFPTIGFEKSSMNGGKDYGQAVHCDRFF*