AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1425510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1425510 MtrunA17_Chr4g0006161 95.122 123 6 0 1 123 1 123 4.85e-71 208
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1425510 AT2G38140.1 49.580 119 58 1 5 123 2 118 4.21e-26 94.7

Find 54 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATTTGCAATATACTATT+TGG 0.117600 tig0025867:+11671 Msa1425510:three_prime_UTR
ATCTTCAAGCTTCTCTTTCT+TGG 0.182199 tig0025867:-11535 None:intergenic
TCGCTTTCACCAACCCCTTC+TGG 0.306084 tig0025867:+10653 Msa1425510:CDS
AATAAAAGTAAACTCAAATA+AGG 0.334661 tig0025867:-11708 None:intergenic
GTACCCTTGTTCTTGTTCCT+TGG 0.342529 tig0025867:-11477 None:intergenic
TTCTCTTTCTTGGTAGCATC+TGG 0.349140 tig0025867:-11525 None:intergenic
GTTATCTATCCTCTCAGTTA+TGG 0.351088 tig0025867:+10484 Msa1425510:exon
TCCAAATAGTATATTGCAAA+TGG 0.394156 tig0025867:-11672 None:intergenic
GAAAGAGAAGCTTGAAGATA+AGG 0.394365 tig0025867:+11539 Msa1425510:CDS
AAACGGTTCAGCCATTCGTT+TGG 0.400874 tig0025867:+10822 Msa1425510:CDS
AACCAAACAAAAGTTTCCTA+TGG 0.418290 tig0025867:+11950 Msa1425510:three_prime_UTR
TGTATTGTGGCAGAGGTGAT+AGG 0.424452 tig0025867:+10784 Msa1425510:CDS
ATAGTCGAGGTTTAAAATCC+TGG 0.461126 tig0025867:+11792 Msa1425510:three_prime_UTR
TGATAAGGTTGGTTTGATTG+AGG 0.472488 tig0025867:-10451 None:intergenic
GTAGGCAAATACTGCCAATT+CGG 0.492656 tig0025867:+11835 Msa1425510:three_prime_UTR
GCGTGGAGTTGAAGAGAGAG+TGG 0.494775 tig0025867:-10542 None:intergenic
TCTTTCTTGGTAGCATCTGG+TGG 0.499433 tig0025867:-11522 None:intergenic
TGCTATATCGTATTGAGAGT+GGG 0.507195 tig0025867:+11754 Msa1425510:three_prime_UTR
AAAGGTGAGAAGAGGAAGCG+TGG 0.518100 tig0025867:-10559 None:intergenic
ATTGGGATTGAGAGAAGGAA+AGG 0.519722 tig0025867:-10577 None:intergenic
AGAGAAGGAAAGGTGAGAAG+AGG 0.519757 tig0025867:-10567 None:intergenic
GGAAAACTGCTAAGGGGAAA+CGG 0.521583 tig0025867:+10805 Msa1425510:CDS
GATTGGTAAGTGAAGAGATT+GGG 0.527445 tig0025867:-10594 None:intergenic
AAGAGATTGGGATTGAGAGA+AGG 0.529493 tig0025867:-10582 None:intergenic
AAATCACCTAACTAGAAAAG+AGG 0.532100 tig0025867:-11590 None:intergenic
CAAAGACACTATGATAAGGT+TGG 0.533422 tig0025867:-10462 None:intergenic
AGGAACAAGAACAAGGGTAC+AGG 0.550303 tig0025867:+11480 Msa1425510:CDS
TGATTGGTAAGTGAAGAGAT+TGG 0.551437 tig0025867:-10595 None:intergenic
AGGTGATAGGAAAACTGCTA+AGG 0.552164 tig0025867:+10797 Msa1425510:CDS
TCTGGTGGAGCATAAATCCT+TGG 0.553001 tig0025867:-11507 None:intergenic
ATAACAAAGACACTATGATA+AGG 0.555573 tig0025867:-10466 None:intergenic
ACCAAACAAAAGTTTCCTAT+GGG 0.556263 tig0025867:+11951 Msa1425510:three_prime_UTR
GGGACTGATGAAGTGATGAT+TGG 0.562516 tig0025867:-10611 None:intergenic
AGTTGAAGAGAGAGTGGTGA+AGG 0.566595 tig0025867:-10536 None:intergenic
GGTGATAGGAAAACTGCTAA+GGG 0.567207 tig0025867:+10798 Msa1425510:CDS
ACATTACATTTCCAAACGAA+TGG 0.569487 tig0025867:-10833 None:intergenic
ACAAGGTTAAAGAGAGGGTG+GGG 0.576219 tig0025867:-10631 None:intergenic
TTGCTATATCGTATTGAGAG+TGG 0.577737 tig0025867:+11753 Msa1425510:three_prime_UTR
GGTGGAGCATAAATCCTTGG+TGG 0.582114 tig0025867:-11504 None:intergenic
TAGAAACACTCTTATAGTCG+AGG 0.584561 tig0025867:+11779 Msa1425510:three_prime_UTR
AATCACCTAACTAGAAAAGA+GGG 0.586436 tig0025867:-11589 None:intergenic
AAGGCCAAGGAACAAGAACA+AGG 0.590824 tig0025867:+11473 Msa1425510:CDS
TATCCTCTCAGTTATGGCCA+TGG 0.592654 tig0025867:+10490 Msa1425510:exon
CGACAAGGTTAAAGAGAGGG+TGG 0.596467 tig0025867:-10633 None:intergenic
GACAAGGTTAAAGAGAGGGT+GGG 0.598803 tig0025867:-10632 None:intergenic
AATGTGATCAGGCAAGGCCA+AGG 0.609619 tig0025867:+11460 Msa1425510:intron
TAGAAGCAGTGATGATGCCA+TGG 0.657767 tig0025867:-10507 None:intergenic
AAGCGACAAGGTTAAAGAGA+GGG 0.666570 tig0025867:-10636 None:intergenic
AGGGGTTGGTGAAAGCGACA+AGG 0.670121 tig0025867:-10648 None:intergenic
AAAGCGACAAGGTTAAAGAG+AGG 0.678658 tig0025867:-10637 None:intergenic
ATGCCATGGCCATAACTGAG+AGG 0.696408 tig0025867:-10493 None:intergenic
AGGCCAAGGAACAAGAACAA+GGG 0.711024 tig0025867:+11474 Msa1425510:CDS
GTGATAGGAAAACTGCTAAG+GGG 0.715035 tig0025867:+10799 Msa1425510:CDS
ACAAGGGTACAGGACCACCA+AGG 0.743357 tig0025867:+11490 Msa1425510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGCTAAATTATTATAAA+AGG + tig0025867:11044-11063 Msa1425510:intron 10.0%
!! ATTTAATCATTATTATTGTT+TGG + tig0025867:11355-11374 Msa1425510:intron 10.0%
!!! TTTTGCTAAATTATTATAAA+AGG + tig0025867:11044-11063 Msa1425510:intron 10.0%
!! ATTTAATCATTATTATTGTT+TGG + tig0025867:11355-11374 Msa1425510:intron 10.0%
!! GAAATTCAAAATGTATAAAA+TGG - tig0025867:10868-10887 None:intergenic 15.0%
!! AATAATTTAGCAAAACAAAA+AGG - tig0025867:11039-11058 None:intergenic 15.0%
!! AATAAAAGTAAACTCAAATA+AGG - tig0025867:11711-11730 None:intergenic 15.0%
!! GAAATTCAAAATGTATAAAA+TGG - tig0025867:10868-10887 None:intergenic 15.0%
!! AATAATTTAGCAAAACAAAA+AGG - tig0025867:11039-11058 None:intergenic 15.0%
!! AATAAAAGTAAACTCAAATA+AGG - tig0025867:11711-11730 None:intergenic 15.0%
!!! AATTTTTTCTCCAAGAAAAA+TGG + tig0025867:10677-10696 Msa1425510:intron 20.0%
!!! AACAAAAATTCCATTTTTCT+TGG - tig0025867:10690-10709 None:intergenic 20.0%
!!! TGGAATTTTTGTTATGAATT+TGG + tig0025867:10697-10716 Msa1425510:intron 20.0%
!!! GATAACCCATTTTTTTATTT+TGG + tig0025867:10739-10758 Msa1425510:intron 20.0%
!! ACGAACCAAAATAAAAAAAT+GGG - tig0025867:10747-10766 None:intergenic 20.0%
!! AACGAACCAAAATAAAAAAA+TGG - tig0025867:10748-10767 None:intergenic 20.0%
!! AAAAATTCGAGATTATTTCA+TGG + tig0025867:11321-11340 Msa1425510:intron 20.0%
!! TTCAAATTAACATTAGAACT+AGG - tig0025867:11421-11440 None:intergenic 20.0%
!!! GATTTATAGTTTTTGACATA+TGG + tig0025867:11646-11665 Msa1425510:three_prime_UTR 20.0%
!!! AATTTTTTCTCCAAGAAAAA+TGG + tig0025867:10677-10696 Msa1425510:intron 20.0%
!!! AACAAAAATTCCATTTTTCT+TGG - tig0025867:10690-10709 None:intergenic 20.0%
!!! TGGAATTTTTGTTATGAATT+TGG + tig0025867:10697-10716 Msa1425510:intron 20.0%
!!! GATAACCCATTTTTTTATTT+TGG + tig0025867:10739-10758 Msa1425510:intron 20.0%
!! ACGAACCAAAATAAAAAAAT+GGG - tig0025867:10747-10766 None:intergenic 20.0%
!! AACGAACCAAAATAAAAAAA+TGG - tig0025867:10748-10767 None:intergenic 20.0%
!! AAAAATTCGAGATTATTTCA+TGG + tig0025867:11321-11340 Msa1425510:intron 20.0%
!! TTCAAATTAACATTAGAACT+AGG - tig0025867:11421-11440 None:intergenic 20.0%
!!! GATTTATAGTTTTTGACATA+TGG + tig0025867:11646-11665 Msa1425510:three_prime_UTR 20.0%
! ATAACAAAGACACTATGATA+AGG - tig0025867:10469-10488 None:intergenic 25.0%
!! TGTTTTCTTTTAGTGTATTG+TGG + tig0025867:10771-10790 Msa1425510:intron 25.0%
! GAATTTATTGAGTGTATGTT+TGG + tig0025867:10897-10916 Msa1425510:intron 25.0%
! ATACACTAACAGTGTAAAAT+AGG - tig0025867:11183-11202 None:intergenic 25.0%
! CTACAAATTAGAAAACTACA+CGG - tig0025867:11272-11291 None:intergenic 25.0%
!! TTGTCATTTAAAATGTGATC+AGG + tig0025867:11449-11468 Msa1425510:intron 25.0%
! TCCATTTGCAATATACTATT+TGG + tig0025867:11671-11690 Msa1425510:three_prime_UTR 25.0%
! TCCAAATAGTATATTGCAAA+TGG - tig0025867:11675-11694 None:intergenic 25.0%
! ATAACAAAGACACTATGATA+AGG - tig0025867:10469-10488 None:intergenic 25.0%
!! TGTTTTCTTTTAGTGTATTG+TGG + tig0025867:10771-10790 Msa1425510:intron 25.0%
! GAATTTATTGAGTGTATGTT+TGG + tig0025867:10897-10916 Msa1425510:intron 25.0%
! ATACACTAACAGTGTAAAAT+AGG - tig0025867:11183-11202 None:intergenic 25.0%
! CTACAAATTAGAAAACTACA+CGG - tig0025867:11272-11291 None:intergenic 25.0%
!! TTGTCATTTAAAATGTGATC+AGG + tig0025867:11449-11468 Msa1425510:intron 25.0%
! TCCATTTGCAATATACTATT+TGG + tig0025867:11671-11690 Msa1425510:three_prime_UTR 25.0%
! TCCAAATAGTATATTGCAAA+TGG - tig0025867:11675-11694 None:intergenic 25.0%
TGGAGAAAAAATTACCAGAA+GGG - tig0025867:10670-10689 None:intergenic 30.0%
TTGGAGAAAAAATTACCAGA+AGG - tig0025867:10671-10690 None:intergenic 30.0%
ACATTACATTTCCAAACGAA+TGG - tig0025867:10836-10855 None:intergenic 30.0%
TATTGAGTGTATGTTTGGTT+AGG + tig0025867:10902-10921 Msa1425510:intron 30.0%
!! AATGTACGTTGATTCATGTT+TGG + tig0025867:10979-10998 Msa1425510:intron 30.0%
! TTACATCTGCATAAAGCATT+TGG + tig0025867:11093-11112 Msa1425510:intron 30.0%
!!! TGGTGGTTATTTTTCAAAAG+TGG + tig0025867:11113-11132 Msa1425510:intron 30.0%
TTCAAAAGTGGTGATAAAAC+AGG + tig0025867:11125-11144 Msa1425510:intron 30.0%
ATCCATTTAACTCATGTTTC+TGG + tig0025867:11203-11222 Msa1425510:intron 30.0%
!!! TGATTTTTTAGTCCATGAAG+AGG + tig0025867:11238-11257 Msa1425510:intron 30.0%
!!! GATTTTTTAGTCCATGAAGA+GGG + tig0025867:11239-11258 Msa1425510:intron 30.0%
!! CGTGTAGTTTTCTAATTTGT+AGG + tig0025867:11270-11289 Msa1425510:intron 30.0%
! ATTTAAAATGTGATCAGGCA+AGG + tig0025867:11454-11473 Msa1425510:intron 30.0%
AATCACCTAACTAGAAAAGA+GGG - tig0025867:11592-11611 None:intergenic 30.0%
AAATCACCTAACTAGAAAAG+AGG - tig0025867:11593-11612 None:intergenic 30.0%
ACAGTTTGCGAAAAAATTGT+AGG + tig0025867:11817-11836 Msa1425510:three_prime_UTR 30.0%
AACCAAACAAAAGTTTCCTA+TGG + tig0025867:11950-11969 Msa1425510:three_prime_UTR 30.0%
ACCAAACAAAAGTTTCCTAT+GGG + tig0025867:11951-11970 Msa1425510:three_prime_UTR 30.0%
TGGAGAAAAAATTACCAGAA+GGG - tig0025867:10670-10689 None:intergenic 30.0%
TTGGAGAAAAAATTACCAGA+AGG - tig0025867:10671-10690 None:intergenic 30.0%
ACATTACATTTCCAAACGAA+TGG - tig0025867:10836-10855 None:intergenic 30.0%
TATTGAGTGTATGTTTGGTT+AGG + tig0025867:10902-10921 Msa1425510:intron 30.0%
!! AATGTACGTTGATTCATGTT+TGG + tig0025867:10979-10998 Msa1425510:intron 30.0%
! TTACATCTGCATAAAGCATT+TGG + tig0025867:11093-11112 Msa1425510:intron 30.0%
!!! TGGTGGTTATTTTTCAAAAG+TGG + tig0025867:11113-11132 Msa1425510:intron 30.0%
TTCAAAAGTGGTGATAAAAC+AGG + tig0025867:11125-11144 Msa1425510:intron 30.0%
ATCCATTTAACTCATGTTTC+TGG + tig0025867:11203-11222 Msa1425510:intron 30.0%
!!! TGATTTTTTAGTCCATGAAG+AGG + tig0025867:11238-11257 Msa1425510:intron 30.0%
!!! GATTTTTTAGTCCATGAAGA+GGG + tig0025867:11239-11258 Msa1425510:intron 30.0%
!! CGTGTAGTTTTCTAATTTGT+AGG + tig0025867:11270-11289 Msa1425510:intron 30.0%
! ATTTAAAATGTGATCAGGCA+AGG + tig0025867:11454-11473 Msa1425510:intron 30.0%
AATCACCTAACTAGAAAAGA+GGG - tig0025867:11592-11611 None:intergenic 30.0%
AAATCACCTAACTAGAAAAG+AGG - tig0025867:11593-11612 None:intergenic 30.0%
ACAGTTTGCGAAAAAATTGT+AGG + tig0025867:11817-11836 Msa1425510:three_prime_UTR 30.0%
AACCAAACAAAAGTTTCCTA+TGG + tig0025867:11950-11969 Msa1425510:three_prime_UTR 30.0%
ACCAAACAAAAGTTTCCTAT+GGG + tig0025867:11951-11970 Msa1425510:three_prime_UTR 30.0%
!! TGATAAGGTTGGTTTGATTG+AGG - tig0025867:10454-10473 None:intergenic 35.0%
CAAAGACACTATGATAAGGT+TGG - tig0025867:10465-10484 None:intergenic 35.0%
GTTATCTATCCTCTCAGTTA+TGG + tig0025867:10484-10503 Msa1425510:exon 35.0%
GATTGGTAAGTGAAGAGATT+GGG - tig0025867:10597-10616 None:intergenic 35.0%
TGATTGGTAAGTGAAGAGAT+TGG - tig0025867:10598-10617 None:intergenic 35.0%
AAAAAATTACCAGAAGGGGT+TGG - tig0025867:10665-10684 None:intergenic 35.0%
GGAGAAAAAATTACCAGAAG+GGG - tig0025867:10669-10688 None:intergenic 35.0%
GACCAGAAACATGAGTTAAA+TGG - tig0025867:11208-11227 None:intergenic 35.0%
GGACTGAAAAGTAAATACTG+AGG + tig0025867:11291-11310 Msa1425510:intron 35.0%
ATCTTCAAGCTTCTCTTTCT+TGG - tig0025867:11538-11557 None:intergenic 35.0%
GAAAGAGAAGCTTGAAGATA+AGG + tig0025867:11539-11558 Msa1425510:CDS 35.0%
!!! TGAATCCCTCTTTTCTAGTT+AGG + tig0025867:11584-11603 Msa1425510:CDS 35.0%
TTGCTATATCGTATTGAGAG+TGG + tig0025867:11753-11772 Msa1425510:three_prime_UTR 35.0%
TGCTATATCGTATTGAGAGT+GGG + tig0025867:11754-11773 Msa1425510:three_prime_UTR 35.0%
TAGAAACACTCTTATAGTCG+AGG + tig0025867:11779-11798 Msa1425510:three_prime_UTR 35.0%
! ATAGTCGAGGTTTAAAATCC+TGG + tig0025867:11792-11811 Msa1425510:three_prime_UTR 35.0%
GACAAAAATTGTGACCGAAT+TGG - tig0025867:11852-11871 None:intergenic 35.0%
! TCCCATAGGAAACTTTTGTT+TGG - tig0025867:11955-11974 None:intergenic 35.0%
TCCTATGGGAAAAACTGATT+TGG + tig0025867:11965-11984 Msa1425510:three_prime_UTR 35.0%
! CCTATGGGAAAAACTGATTT+GGG + tig0025867:11966-11985 Msa1425510:three_prime_UTR 35.0%
!! TGATAAGGTTGGTTTGATTG+AGG - tig0025867:10454-10473 None:intergenic 35.0%
CAAAGACACTATGATAAGGT+TGG - tig0025867:10465-10484 None:intergenic 35.0%
GTTATCTATCCTCTCAGTTA+TGG + tig0025867:10484-10503 Msa1425510:exon 35.0%
GATTGGTAAGTGAAGAGATT+GGG - tig0025867:10597-10616 None:intergenic 35.0%
TGATTGGTAAGTGAAGAGAT+TGG - tig0025867:10598-10617 None:intergenic 35.0%
AAAAAATTACCAGAAGGGGT+TGG - tig0025867:10665-10684 None:intergenic 35.0%
GGAGAAAAAATTACCAGAAG+GGG - tig0025867:10669-10688 None:intergenic 35.0%
GACCAGAAACATGAGTTAAA+TGG - tig0025867:11208-11227 None:intergenic 35.0%
GGACTGAAAAGTAAATACTG+AGG + tig0025867:11291-11310 Msa1425510:intron 35.0%
ATCTTCAAGCTTCTCTTTCT+TGG - tig0025867:11538-11557 None:intergenic 35.0%
GAAAGAGAAGCTTGAAGATA+AGG + tig0025867:11539-11558 Msa1425510:CDS 35.0%
!!! TGAATCCCTCTTTTCTAGTT+AGG + tig0025867:11584-11603 Msa1425510:CDS 35.0%
TTGCTATATCGTATTGAGAG+TGG + tig0025867:11753-11772 Msa1425510:three_prime_UTR 35.0%
TGCTATATCGTATTGAGAGT+GGG + tig0025867:11754-11773 Msa1425510:three_prime_UTR 35.0%
TAGAAACACTCTTATAGTCG+AGG + tig0025867:11779-11798 Msa1425510:three_prime_UTR 35.0%
! ATAGTCGAGGTTTAAAATCC+TGG + tig0025867:11792-11811 Msa1425510:three_prime_UTR 35.0%
GACAAAAATTGTGACCGAAT+TGG - tig0025867:11852-11871 None:intergenic 35.0%
! TCCCATAGGAAACTTTTGTT+TGG - tig0025867:11955-11974 None:intergenic 35.0%
TCCTATGGGAAAAACTGATT+TGG + tig0025867:11965-11984 Msa1425510:three_prime_UTR 35.0%
! CCTATGGGAAAAACTGATTT+GGG + tig0025867:11966-11985 Msa1425510:three_prime_UTR 35.0%
ATTGGGATTGAGAGAAGGAA+AGG - tig0025867:10580-10599 None:intergenic 40.0%
AAGAGATTGGGATTGAGAGA+AGG - tig0025867:10585-10604 None:intergenic 40.0%
AAGCGACAAGGTTAAAGAGA+GGG - tig0025867:10639-10658 None:intergenic 40.0%
AAAGCGACAAGGTTAAAGAG+AGG - tig0025867:10640-10659 None:intergenic 40.0%
! CTTTTAGTGTATTGTGGCAG+AGG + tig0025867:10777-10796 Msa1425510:intron 40.0%
AGGTGATAGGAAAACTGCTA+AGG + tig0025867:10797-10816 Msa1425510:CDS 40.0%
GGTGATAGGAAAACTGCTAA+GGG + tig0025867:10798-10817 Msa1425510:CDS 40.0%
GTGATAGGAAAACTGCTAAG+GGG + tig0025867:10799-10818 Msa1425510:CDS 40.0%
! CATCTGCATAAAGCATTTGG+TGG + tig0025867:11096-11115 Msa1425510:intron 40.0%
GGTGATAAAACAGGCTTACA+TGG + tig0025867:11134-11153 Msa1425510:intron 40.0%
! TTCTCTTTCTTGGTAGCATC+TGG - tig0025867:11528-11547 None:intergenic 40.0%
!!! TTTTTTCGCAAACTGTGACC+AGG - tig0025867:11813-11832 None:intergenic 40.0%
GTAGGCAAATACTGCCAATT+CGG + tig0025867:11835-11854 Msa1425510:three_prime_UTR 40.0%
! TCACAATTTTTGTCGCGATG+TGG + tig0025867:11858-11877 Msa1425510:three_prime_UTR 40.0%
! AATTTTTGTCGCGATGTGGT+TGG + tig0025867:11862-11881 Msa1425510:three_prime_UTR 40.0%
! ATTTTTGTCGCGATGTGGTT+GGG + tig0025867:11863-11882 Msa1425510:three_prime_UTR 40.0%
! CCCAAATCAGTTTTTCCCAT+AGG - tig0025867:11969-11988 None:intergenic 40.0%
ATTGGGATTGAGAGAAGGAA+AGG - tig0025867:10580-10599 None:intergenic 40.0%
AAGAGATTGGGATTGAGAGA+AGG - tig0025867:10585-10604 None:intergenic 40.0%
AAGCGACAAGGTTAAAGAGA+GGG - tig0025867:10639-10658 None:intergenic 40.0%
AAAGCGACAAGGTTAAAGAG+AGG - tig0025867:10640-10659 None:intergenic 40.0%
! CTTTTAGTGTATTGTGGCAG+AGG + tig0025867:10777-10796 Msa1425510:intron 40.0%
AGGTGATAGGAAAACTGCTA+AGG + tig0025867:10797-10816 Msa1425510:CDS 40.0%
GGTGATAGGAAAACTGCTAA+GGG + tig0025867:10798-10817 Msa1425510:CDS 40.0%
GTGATAGGAAAACTGCTAAG+GGG + tig0025867:10799-10818 Msa1425510:CDS 40.0%
! CATCTGCATAAAGCATTTGG+TGG + tig0025867:11096-11115 Msa1425510:intron 40.0%
GGTGATAAAACAGGCTTACA+TGG + tig0025867:11134-11153 Msa1425510:intron 40.0%
! TTCTCTTTCTTGGTAGCATC+TGG - tig0025867:11528-11547 None:intergenic 40.0%
!!! TTTTTTCGCAAACTGTGACC+AGG - tig0025867:11813-11832 None:intergenic 40.0%
GTAGGCAAATACTGCCAATT+CGG + tig0025867:11835-11854 Msa1425510:three_prime_UTR 40.0%
! TCACAATTTTTGTCGCGATG+TGG + tig0025867:11858-11877 Msa1425510:three_prime_UTR 40.0%
! AATTTTTGTCGCGATGTGGT+TGG + tig0025867:11862-11881 Msa1425510:three_prime_UTR 40.0%
! ATTTTTGTCGCGATGTGGTT+GGG + tig0025867:11863-11882 Msa1425510:three_prime_UTR 40.0%
! CCCAAATCAGTTTTTCCCAT+AGG - tig0025867:11969-11988 None:intergenic 40.0%
TATCCTCTCAGTTATGGCCA+TGG + tig0025867:10490-10509 Msa1425510:exon 45.0%
! TAGAAGCAGTGATGATGCCA+TGG - tig0025867:10510-10529 None:intergenic 45.0%
AGTTGAAGAGAGAGTGGTGA+AGG - tig0025867:10539-10558 None:intergenic 45.0%
AGAGAAGGAAAGGTGAGAAG+AGG - tig0025867:10570-10589 None:intergenic 45.0%
GGGACTGATGAAGTGATGAT+TGG - tig0025867:10614-10633 None:intergenic 45.0%
ACAAGGTTAAAGAGAGGGTG+GGG - tig0025867:10634-10653 None:intergenic 45.0%
GACAAGGTTAAAGAGAGGGT+GGG - tig0025867:10635-10654 None:intergenic 45.0%
TGTATTGTGGCAGAGGTGAT+AGG + tig0025867:10784-10803 Msa1425510:CDS 45.0%
GGAAAACTGCTAAGGGGAAA+CGG + tig0025867:10805-10824 Msa1425510:CDS 45.0%
AAACGGTTCAGCCATTCGTT+TGG + tig0025867:10822-10841 Msa1425510:CDS 45.0%
ACGGTTTAAGTCCCTCTTCA+TGG - tig0025867:11253-11272 None:intergenic 45.0%
AAGGCCAAGGAACAAGAACA+AGG + tig0025867:11473-11492 Msa1425510:CDS 45.0%
AGGCCAAGGAACAAGAACAA+GGG + tig0025867:11474-11493 Msa1425510:CDS 45.0%
GTACCCTTGTTCTTGTTCCT+TGG - tig0025867:11480-11499 None:intergenic 45.0%
! AGGAACAAGAACAAGGGTAC+AGG + tig0025867:11480-11499 Msa1425510:CDS 45.0%
TCTGGTGGAGCATAAATCCT+TGG - tig0025867:11510-11529 None:intergenic 45.0%
! TCTTTCTTGGTAGCATCTGG+TGG - tig0025867:11525-11544 None:intergenic 45.0%
! TTTTTGTCGCGATGTGGTTG+GGG + tig0025867:11864-11883 Msa1425510:three_prime_UTR 45.0%
CATCAAAAACCTCGATGTCG+TGG + tig0025867:11890-11909 Msa1425510:three_prime_UTR 45.0%
GAGAAAAATCCACGACATCG+AGG - tig0025867:11902-11921 None:intergenic 45.0%
! CGATGTCGTGGATTTTTCTC+AGG + tig0025867:11902-11921 Msa1425510:three_prime_UTR 45.0%
TATCCTCTCAGTTATGGCCA+TGG + tig0025867:10490-10509 Msa1425510:exon 45.0%
! TAGAAGCAGTGATGATGCCA+TGG - tig0025867:10510-10529 None:intergenic 45.0%
AGTTGAAGAGAGAGTGGTGA+AGG - tig0025867:10539-10558 None:intergenic 45.0%
AGAGAAGGAAAGGTGAGAAG+AGG - tig0025867:10570-10589 None:intergenic 45.0%
GGGACTGATGAAGTGATGAT+TGG - tig0025867:10614-10633 None:intergenic 45.0%
ACAAGGTTAAAGAGAGGGTG+GGG - tig0025867:10634-10653 None:intergenic 45.0%
GACAAGGTTAAAGAGAGGGT+GGG - tig0025867:10635-10654 None:intergenic 45.0%
TGTATTGTGGCAGAGGTGAT+AGG + tig0025867:10784-10803 Msa1425510:CDS 45.0%
GGAAAACTGCTAAGGGGAAA+CGG + tig0025867:10805-10824 Msa1425510:CDS 45.0%
AAACGGTTCAGCCATTCGTT+TGG + tig0025867:10822-10841 Msa1425510:CDS 45.0%
ACGGTTTAAGTCCCTCTTCA+TGG - tig0025867:11253-11272 None:intergenic 45.0%
AAGGCCAAGGAACAAGAACA+AGG + tig0025867:11473-11492 Msa1425510:CDS 45.0%
AGGCCAAGGAACAAGAACAA+GGG + tig0025867:11474-11493 Msa1425510:CDS 45.0%
GTACCCTTGTTCTTGTTCCT+TGG - tig0025867:11480-11499 None:intergenic 45.0%
! AGGAACAAGAACAAGGGTAC+AGG + tig0025867:11480-11499 Msa1425510:CDS 45.0%
TCTGGTGGAGCATAAATCCT+TGG - tig0025867:11510-11529 None:intergenic 45.0%
! TCTTTCTTGGTAGCATCTGG+TGG - tig0025867:11525-11544 None:intergenic 45.0%
! TTTTTGTCGCGATGTGGTTG+GGG + tig0025867:11864-11883 Msa1425510:three_prime_UTR 45.0%
CATCAAAAACCTCGATGTCG+TGG + tig0025867:11890-11909 Msa1425510:three_prime_UTR 45.0%
GAGAAAAATCCACGACATCG+AGG - tig0025867:11902-11921 None:intergenic 45.0%
! CGATGTCGTGGATTTTTCTC+AGG + tig0025867:11902-11921 Msa1425510:three_prime_UTR 45.0%
ATGCCATGGCCATAACTGAG+AGG - tig0025867:10496-10515 None:intergenic 50.0%
AAAGGTGAGAAGAGGAAGCG+TGG - tig0025867:10562-10581 None:intergenic 50.0%
CGACAAGGTTAAAGAGAGGG+TGG - tig0025867:10636-10655 None:intergenic 50.0%
AATGTGATCAGGCAAGGCCA+AGG + tig0025867:11460-11479 Msa1425510:intron 50.0%
GGTGGAGCATAAATCCTTGG+TGG - tig0025867:11507-11526 None:intergenic 50.0%
ATGCCATGGCCATAACTGAG+AGG - tig0025867:10496-10515 None:intergenic 50.0%
AAAGGTGAGAAGAGGAAGCG+TGG - tig0025867:10562-10581 None:intergenic 50.0%
CGACAAGGTTAAAGAGAGGG+TGG - tig0025867:10636-10655 None:intergenic 50.0%
AATGTGATCAGGCAAGGCCA+AGG + tig0025867:11460-11479 Msa1425510:intron 50.0%
GGTGGAGCATAAATCCTTGG+TGG - tig0025867:11507-11526 None:intergenic 50.0%
GCGTGGAGTTGAAGAGAGAG+TGG - tig0025867:10545-10564 None:intergenic 55.0%
!! AGGGGTTGGTGAAAGCGACA+AGG - tig0025867:10651-10670 None:intergenic 55.0%
TCGCTTTCACCAACCCCTTC+TGG + tig0025867:10653-10672 Msa1425510:CDS 55.0%
! ACAAGGGTACAGGACCACCA+AGG + tig0025867:11490-11509 Msa1425510:CDS 55.0%
GCGTGGAGTTGAAGAGAGAG+TGG - tig0025867:10545-10564 None:intergenic 55.0%
!! AGGGGTTGGTGAAAGCGACA+AGG - tig0025867:10651-10670 None:intergenic 55.0%
TCGCTTTCACCAACCCCTTC+TGG + tig0025867:10653-10672 Msa1425510:CDS 55.0%
! ACAAGGGTACAGGACCACCA+AGG + tig0025867:11490-11509 Msa1425510:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0025867 gene 10451 11994 10451 ID=Msa1425510;Name=Msa1425510
tig0025867 mRNA 10451 11994 10451 ID=Msa1425510-mRNA-1;Parent=Msa1425510;Name=Msa1425510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=52|1|1|1|1|1|3|389|123
tig0025867 exon 10451 10674 10451 ID=Msa1425510-mRNA-1:exon:4341;Parent=Msa1425510-mRNA-1
tig0025867 exon 10784 10848 10784 ID=Msa1425510-mRNA-1:exon:4342;Parent=Msa1425510-mRNA-1
tig0025867 exon 11471 11994 11471 ID=Msa1425510-mRNA-1:exon:4343;Parent=Msa1425510-mRNA-1
tig0025867 five_prime_UTR 10451 10502 10451 ID=Msa1425510-mRNA-1:five_prime_utr;Parent=Msa1425510-mRNA-1
tig0025867 CDS 10503 10674 10503 ID=Msa1425510-mRNA-1:cds;Parent=Msa1425510-mRNA-1
tig0025867 CDS 10784 10848 10784 ID=Msa1425510-mRNA-1:cds;Parent=Msa1425510-mRNA-1
tig0025867 CDS 11471 11605 11471 ID=Msa1425510-mRNA-1:cds;Parent=Msa1425510-mRNA-1
tig0025867 three_prime_UTR 11606 11994 11606 ID=Msa1425510-mRNA-1:three_prime_utr;Parent=Msa1425510-mRNA-1
Gene Sequence

>Msa1425510

ATGGCCATGGCATCATCACTGCTTCTAGCATCACCTTCACCACTCTCTCTTCAACTCCACGCTTCCTCTTCTCACCTTTCCTTCTCTCAATCCCAATCTCTTCACTTACCAATCATCACTTCATCAGTCCCCACCCTCTCTTTAACCTTGTCGCTTTCACCAACCCCTTCTGTGTATTGTGGCAGAGGTGATAGGAAAACTGCTAAGGGGAAACGGTTCAGCCATTCGTTTGGAAATGCAAGGCCAAGGAACAAGAACAAGGGTACAGGACCACCAAGGATTTATGCTCCACCAGATGCTACCAAGAAAGAGAAGCTTGAAGATAAGGAAGTGATTAAGATTGAAATTAATGAATCCCTCTTTTCTAGTTAG

Protein sequence

>Msa1425510

MAMASSLLLASPSPLSLQLHASSSHLSFSQSQSLHLPIITSSVPTLSLTLSLSPTPSVYCGRGDRKTAKGKRFSHSFGNARPRNKNKGTGPPRIYAPPDATKKEKLEDKEVIKIEINESLFSS*