AlfalfaGEDB | Msa1058590

M. sativa cultivar zhongmu-4 / Msa1058590

KEGG: K11752
GO: GO:0003674 GO:0003824 GO:0004159 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016491 GO:0016627 GO:0016628 GO:0016787 GO:0016798 GO:0016799 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055114 GO:0071704 GO:0090304 GO:1901135 GO:1901360
PFAM: PF01872.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1058590	XP_013449368.1	99.162	597	4	1	1	597	1	596	0.0	1228

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1058590	sp\|Q9STY4\|RIBRX_ARATH	70.519	597	155	6	12	594	9	598	0.0	852

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1058590	A0A072U1X8	99.162	597	4	1	1	597	1	596	0.0	1228

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007570	Msa1058590	0.802785	4.756778e-49	-8.615850e-47
Msa0021240	Msa1058590	0.808176	3.522346e-50	-8.615850e-47
Msa0021570	Msa1058590	0.802492	5.468261e-49	-8.615850e-47
Msa0022230	Msa1058590	0.827059	1.928232e-54	-8.615850e-47
Msa0027030	Msa1058590	0.820183	7.846479e-53	-8.615850e-47
Msa0028450	Msa1058590	0.815583	8.583522e-52	-8.615850e-47
Msa0032990	Msa1058590	0.821544	3.816730e-53	-8.615850e-47
Msa0034100	Msa1058590	0.804656	1.945713e-49	-8.615850e-47
Msa0037040	Msa1058590	0.807222	5.615290e-50	-8.615850e-47
Msa0038750	Msa1058590	0.803568	3.276948e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1058590	MtrunA17_Chr7g0249401	98.824	510	5	1	1	510	1	509	0.0	1050
Msa1058590	MtrunA17_Chr7g0249411	98.864	88	1	0	510	597	1018	1105	1.09e-48	182
Msa1058590	MtrunA17_Chr4g0066901	28.363	342	218	8	21	352	63	387	1.97e-27	115

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1058590	AT3G47390.2	74.150	588	146	4	12	594	9	595	0.0	905
Msa1058590	AT3G47390.1	70.519	597	155	6	12	594	9	598	0.0	852
Msa1058590	AT4G20960.1	27.922	308	197	8	32	333	74	362	3.92e-22	99.8

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Find 162 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGCGAAAACGTGACT+TGG	0.606051	7_2:-43569527	Msa1058590:CDS
AAACCTATGGGACATGTCTG+AGG	0.629695	7_2:-43570627	Msa1058590:CDS
AAACCTCAGACATGTCCCAT+AGG	0.614924	7_2:+43570624	None:intergenic
AAACGTGACTTGGTTGAGTG+TGG	0.626984	7_2:-43569517	Msa1058590:CDS
AAACTAGGGTGGGGTCAAAA+GGG	0.550454	7_2:-43572248	Msa1058590:intron
AAAGAATGCACCATCTCCTG+TGG	0.647393	7_2:-43569923	Msa1058590:CDS
AAATACTATACTGCTAAACT+AGG	0.581783	7_2:+43568705	None:intergenic
AAATACTCCATAACATCCCG+CGG	0.656854	7_2:+43570506	None:intergenic
AAATTTGACAATGCACCATG+AGG	0.688050	7_2:+43569579	None:intergenic
AACAAACGAGAAATGTCTAC+TGG	0.490696	7_2:+43568511	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CACTAGTAGTAAGATTATAG+AGG	-	chr7_2:43569075-43569094	Msa1058590:intron	30.0%
TTGCAATTTATCTGCATTCA+GGG	+	chr7_2:43569168-43569187	None:intergenic	30.0%
TTTGCAATTTATCTGCATTC+AGG	+	chr7_2:43569169-43569188	None:intergenic	30.0%
ACTAACAAAGTCTACATTCA+GGG	+	chr7_2:43569197-43569216	None:intergenic	30.0%
TTTGCATATTATCTGCATTC+AGG	-	chr7_2:43569317-43569336	Msa1058590:CDS	30.0%
TTGCATATTATCTGCATTCA+GGG	-	chr7_2:43569318-43569337	Msa1058590:CDS	30.0%
TTATTTAAGCATACCTCACA+GGG	-	chr7_2:43569839-43569858	Msa1058590:intron	30.0%
TATCAGTTCTTTATGTACTG+TGG	-	chr7_2:43569965-43569984	Msa1058590:intron	30.0%
AGTTTGACATATTAAATCCG+CGG	-	chr7_2:43570677-43570696	Msa1058590:CDS	30.0%
CTTCATTTCAATTTCTCCTA+CGG	+	chr7_2:43570828-43570847	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	43568459	43572763	43568459	ID=Msa1058590;Name=Msa1058590
chr7_2	mRNA	43568459	43572763	43568459	ID=Msa1058590-mRNA-1;Parent=Msa1058590;Name=Msa1058590-mRNA-1;_AED=0.08;_eAED=0.08;_QI=54\|1\|1\|1\|1\|1\|9\|251\|597
chr7_2	exon	43568459	43568976	43568459	ID=Msa1058590-mRNA-1:exon:7843;Parent=Msa1058590-mRNA-1
chr7_2	exon	43569296	43569421	43569296	ID=Msa1058590-mRNA-1:exon:7842;Parent=Msa1058590-mRNA-1
chr7_2	exon	43569503	43569748	43569503	ID=Msa1058590-mRNA-1:exon:7841;Parent=Msa1058590-mRNA-1
chr7_2	exon	43569861	43569980	43569861	ID=Msa1058590-mRNA-1:exon:7840;Parent=Msa1058590-mRNA-1
chr7_2	exon	43570421	43570734	43570421	ID=Msa1058590-mRNA-1:exon:7839;Parent=Msa1058590-mRNA-1
chr7_2	exon	43570819	43570944	43570819	ID=Msa1058590-mRNA-1:exon:7838;Parent=Msa1058590-mRNA-1
chr7_2	exon	43571067	43571166	43571067	ID=Msa1058590-mRNA-1:exon:7837;Parent=Msa1058590-mRNA-1
chr7_2	exon	43572126	43572263	43572126	ID=Msa1058590-mRNA-1:exon:7836;Parent=Msa1058590-mRNA-1
chr7_2	exon	43572353	43572763	43572353	ID=Msa1058590-mRNA-1:exon:7835;Parent=Msa1058590-mRNA-1
chr7_2	five_prime_UTR	43572710	43572763	43572710	ID=Msa1058590-mRNA-1:five_prime_utr;Parent=Msa1058590-mRNA-1
chr7_2	CDS	43572353	43572709	43572353	ID=Msa1058590-mRNA-1:cds;Parent=Msa1058590-mRNA-1
chr7_2	CDS	43572126	43572263	43572126	ID=Msa1058590-mRNA-1:cds;Parent=Msa1058590-mRNA-1
chr7_2	CDS	43571067	43571166	43571067	ID=Msa1058590-mRNA-1:cds;Parent=Msa1058590-mRNA-1
chr7_2	CDS	43570819	43570944	43570819	ID=Msa1058590-mRNA-1:cds;Parent=Msa1058590-mRNA-1
chr7_2	CDS	43570421	43570734	43570421	ID=Msa1058590-mRNA-1:cds;Parent=Msa1058590-mRNA-1
chr7_2	CDS	43569861	43569980	43569861	ID=Msa1058590-mRNA-1:cds;Parent=Msa1058590-mRNA-1
chr7_2	CDS	43569503	43569748	43569503	ID=Msa1058590-mRNA-1:cds;Parent=Msa1058590-mRNA-1
chr7_2	CDS	43569296	43569421	43569296	ID=Msa1058590-mRNA-1:cds;Parent=Msa1058590-mRNA-1
chr7_2	CDS	43568710	43568976	43568710	ID=Msa1058590-mRNA-1:cds;Parent=Msa1058590-mRNA-1
chr7_2	three_prime_UTR	43568459	43568709	43568459	ID=Msa1058590-mRNA-1:three_prime_utr;Parent=Msa1058590-mRNA-1

Gene Sequence

>Msa1058590

ATGTGGTGTCTCACTCCAATCGCTAACACTTTCTCATTCTCATCCATCATCTGCAAATGCAAAGCATCTAATGACTCTCACAACCACGCGCTCGACGCCGGGTATATCCGACGCGCCGCCCTCATCGCTGACAAATCCGCCGGTTTCACTTCTCCTCATCCCAACTTCGGCTGCGTCATCGCCACCCCCTCCGGCGATGTCGCCGGTGAAGGTTACCTCTACGCGCAAGGTACCTCCCCTGCCGAAGTTCAGGCCGTTACTTCCGCCGGCGAGCGTTGCCGTGGAGCCACTGCTTACCTGAACATGGAACCTGGTGACTGTGACGGTGACAATACTGCTGTGTCTGCCCTACTTCAGGGTGGGGTCAAAAGGGTTGTTATTGGAATGAGACACCCTTTGCAACATTTTAGAGGAAATGCTGTGCGTGCACTTAGAAGTCAAGGATTGCAAGTTGATCTTCTTGGAGAGGAACTCACTAGTAGTAAGATTATAGAGGATGCTCAAAAAGAATGCCTTCTTGTTAACGCTCCTTTGATTTGTAGAGCTTCTTCGCGTGTACCCTTTTCTGTTCTCAAGTATGCTATGACTCTCGATGGAAAAATTGCTGCTAGCACTGGCCATGCATGGTGGATAAGCTGCAAGCAATCTAGAAACCTAGTTTTTGAGCTGCGAGCTAGAAGCGATGCAATCATTGTGGGAGGAAATACAGTTCGAAGGGACAATCCAAGATTGACAGCCAGACATGGAGGTGGGCATATGCCGATACGCATTGTAATGTCTCAGTCCCTCGATCTTCCAGAGGAGGCAAACCTATGGGACATGTCTGAGGTTTCTACCATAGTTGTAACACAGAGGGGTGCAAGGAGAAGTCTCCAGAAGCTGCTTGCGTCTAAAGGAGTTGAAGTTGTAGAGTTTGACATATTAAATCCGCGGGATGTTATGGAGTATTTTTATGATCGAGGGTATCTTTCAGTTTTCTGGGAATGTGGAGGAACATTGGCTGCGTCTGCTATTTCGTCTGGAGTAATTCACAAGGTTTATGCATTTGTTGCTCCTAAAATTATTGGTGGAAAGAATGCACCATCTCCTGTGGGTGATCTTGGGATGGTTGAGATGTCACAAGCTATAAATCTAATCGATGTTTGCTATCAGCAGGTTGGTCCAGACATGCTTGTTAGTGGATTTCTTCAACCGTTACCAGATACGGCACCGACAATTCCATCACCAGAGGAAACTTTTATTGCTGACCCTACTGTCTCTCCATATGAATCCAGCATCATATTTTTCTATAAAACATGGGATCCTCATGGTGCATTGTCAAATTTCTCTCCTCATCCCATTCAAATGCCTGATGAAAATGGCGAAAACGTGACTTGGTTGAGTGTGGAGCATTACTACCAGGCGCACAAGTTCGTTGGAGTGGATGATACTACTGCAAAGGATTGTTTGGAAAAGATCAAATCTGTAAAAAGTCCAGAAGAAGCTGCTAGAATAGGAAGGTCAATACAAAGGCAGCGTCCTGATCTGATAAGGCCTGATTGGGACAACATGAAGATCGATGTCATGTACTCGGCACTGAAATGCAAGTTCTCAACATACCCGCATTTGAGTTCTATGCTGCTTTCAACTGCCGGTTCGGTTCTAGTTGAGGCTTCTCCCCATGATCTCTTTTGGGGAGGAGGTCGAGAAGGAGAAGGCTTGAATTATCTCGGACGACTGTTGATGAAATTGAGATCAGAGTTTCTTGAGGAATCATCTTCGTCGTCAAACGAGTCTCCTAGTTTAGCAGTATAG

Protein sequence

>Msa1058590

MWCLTPIANTFSFSSIICKCKASNDSHNHALDAGYIRRAALIADKSAGFTSPHPNFGCVIATPSGDVAGEGYLYAQGTSPAEVQAVTSAGERCRGATAYLNMEPGDCDGDNTAVSALLQGGVKRVVIGMRHPLQHFRGNAVRALRSQGLQVDLLGEELTSSKIIEDAQKECLLVNAPLICRASSRVPFSVLKYAMTLDGKIAASTGHAWWISCKQSRNLVFELRARSDAIIVGGNTVRRDNPRLTARHGGGHMPIRIVMSQSLDLPEEANLWDMSEVSTIVVTQRGARRSLQKLLASKGVEVVEFDILNPRDVMEYFYDRGYLSVFWECGGTLAASAISSGVIHKVYAFVAPKIIGGKNAPSPVGDLGMVEMSQAINLIDVCYQQVGPDMLVSGFLQPLPDTAPTIPSPEETFIADPTVSPYESSIIFFYKTWDPHGALSNFSPHPIQMPDENGENVTWLSVEHYYQAHKFVGVDDTTAKDCLEKIKSVKSPEEAARIGRSIQRQRPDLIRPDWDNMKIDVMYSALKCKFSTYPHLSSMLLSTAGSVLVEASPHDLFWGGGREGEGLNYLGRLLMKLRSEFLEESSSSSNESPSLAV*