AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0653090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0653090 MtrunA17_Chr4g0047041 97.030 303 9 0 1 303 1 303 0.0 600
Msa0653090 MtrunA17_Chr1g0161301 32.727 165 94 4 147 303 89 244 3.38e-16 77.0
Msa0653090 MtrunA17_Chr8g0384281 30.065 153 107 0 143 295 341 493 1.10e-15 77.0
Msa0653090 MtrunA17_Chr8g0391761 33.333 141 77 4 171 303 20 151 8.76e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0653090 AT2G33800.1 71.321 265 68 3 44 303 42 303 2.51e-130 373
Msa0653090 AT1G64880.1 33.553 152 101 0 144 295 355 506 1.53e-18 86.3
Msa0653090 AT2G41840.1 31.515 165 96 3 147 303 96 251 5.62e-16 77.0
Msa0653090 AT1G58380.1 31.515 165 96 3 147 303 95 250 6.96e-16 76.6
Msa0653090 AT1G58684.1 31.515 165 96 3 147 303 95 250 8.54e-16 76.6
Msa0653090 AT1G59359.1 31.515 165 96 3 147 303 95 250 8.54e-16 76.6
Msa0653090 AT1G58983.1 31.515 165 96 3 147 303 95 250 8.54e-16 76.6
Msa0653090 AT3G57490.1 30.303 165 98 3 147 303 87 242 1.12e-15 75.9

Find 124 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAGAGCTGATGGAGATTA+TGG 0.212582 4_3:+60921467 Msa0653090:intron
ATTCCATGACGTATTCTTAA+AGG 0.228575 4_3:-60922015 None:intergenic
AACTGTTGTTGTAAGTTTCT+TGG 0.251746 4_3:+60921803 Msa0653090:three_prime_UTR
TGTCAAAACCAGGCATAAAT+TGG 0.260245 4_3:-60921905 None:intergenic
AGAGAGAGAGAATGGGGTTT+TGG 0.268099 4_3:-60919421 None:intergenic
GAGGGAAACAAATGAGGTTT+AGG 0.287989 4_3:+60919790 Msa0653090:CDS
GAATGTGAGTTTGTGGGTTG+TGG 0.290893 4_3:-60919391 None:intergenic
TTGAAGGGAAGGTCTTCTTC+TGG 0.304660 4_3:-60919501 None:intergenic
TTCGACTGGACCGTCGTCTA+TGG 0.308957 4_3:-60919562 None:intergenic
ATGAAGCCTTCCGGGATTTC+CGG 0.310489 4_3:-60919528 None:intergenic
CGGGATTTCCGGTGGGTTGA+AGG 0.323166 4_3:-60919517 None:intergenic
AAGGATACCGGGTTCGGTTC+GGG 0.333237 4_3:+60919690 Msa0653090:CDS
GAAGGATACCGGGTTCGGTT+CGG 0.346246 4_3:+60919689 Msa0653090:CDS
GCAAGTGAAGAATGTGATTC+AGG 0.347348 4_3:-60921858 None:intergenic
GGATCCCTATGGAAGAATTA+TGG 0.351460 4_3:+60921693 Msa0653090:CDS
TGAAGGGAAGGTCTTCTTCT+GGG 0.352947 4_3:-60919500 None:intergenic
AATGTGAGTTTGTGGGTTGT+GGG 0.361016 4_3:-60919390 None:intergenic
CCTGGTACCGGAGTTATTGC+AGG 0.364105 4_3:+60921521 Msa0653090:CDS
AGGGTTACGAAGGTTGTTAA+AGG 0.376413 4_3:+60919768 Msa0653090:CDS
GAGAGAGTAGAGAGAGAGAA+TGG 0.379986 4_3:-60919429 None:intergenic
GTGGTGGAATGAAGCCTTCC+GGG 0.382928 4_3:-60919536 None:intergenic
GCCGGTGTTGAGAATGCTTT+GGG 0.389280 4_3:+60921572 Msa0653090:CDS
TTTAGGGCTATTGTTGTTGT+TGG 0.390533 4_3:+60919807 Msa0653090:CDS
CACTGCAGCTACAGTTGCTC+TGG 0.409585 4_3:-60921630 None:intergenic
GGTGGTGGAATGAAGCCTTC+CGG 0.420960 4_3:-60919537 None:intergenic
AGAGAGTAGAGAGAGAGAAT+GGG 0.427176 4_3:-60919428 None:intergenic
GGAAAAGATAAGAGATGGGT+TGG 0.430497 4_3:+60919722 Msa0653090:CDS
AGGGAAACAAATGAGGTTTA+GGG 0.444508 4_3:+60919791 Msa0653090:CDS
AAGAGTTGTTCAAGTGAGGA+GGG 0.451100 4_3:+60919749 Msa0653090:CDS
TGAGAGGGAATGTGAGTTTG+TGG 0.452351 4_3:-60919398 None:intergenic
TGTGAGAATTGTTCTTGAAA+TGG 0.455018 4_3:+60921550 Msa0653090:CDS
ATGCTTAGACCCGCTTCTCC+TGG 0.460234 4_3:+60921503 Msa0653090:CDS
ATTTCATCTTCGTCTTCGAC+TGG 0.464676 4_3:-60919576 None:intergenic
GGCCGGTGTTGAGAATGCTT+TGG 0.464816 4_3:+60921571 Msa0653090:CDS
AAGAAGGAAAAGATAAGAGA+TGG 0.465607 4_3:+60919717 Msa0653090:CDS
ATGATTATCCAATTTATGCC+TGG 0.468221 4_3:+60921897 Msa0653090:three_prime_UTR
TTTCCGGTGGGTTGAAGGGA+AGG 0.470346 4_3:-60919512 None:intergenic
TACAGTGGTGTTAGTGTGCT+TGG 0.475022 4_3:+60919633 Msa0653090:CDS
GACGAGTTGGTGTTGGTGTT+GGG 0.477749 4_3:+60919841 Msa0653090:CDS
GCGAGGAAGGATACCGGGTT+CGG 0.479438 4_3:+60919684 Msa0653090:CDS
GTTCGGTTCGGGTGCGAAGA+AGG 0.486778 4_3:+60919701 Msa0653090:CDS
TCTCTCTACTCTCTCCTTCG+CGG 0.487780 4_3:+60919437 Msa0653090:CDS
GAGAGGGAATGTGAGTTTGT+GGG 0.488658 4_3:-60919397 None:intergenic
GGACGAGTTGGTGTTGGTGT+TGG 0.490278 4_3:+60919840 Msa0653090:CDS
AAGAAACTTACAACAACAGT+TGG 0.491410 4_3:-60921801 None:intergenic
AGAGAATTGAGAGCAGAAGA+AGG 0.505675 4_3:-60919315 None:intergenic
AAAGAGTTGTTCAAGTGAGG+AGG 0.507039 4_3:+60919748 Msa0653090:CDS
GGGAAGGTCTTCTTCTGGGA+TGG 0.507275 4_3:-60919496 None:intergenic
CAATCATTGTGATGTAGAAC+TGG 0.509337 4_3:+60921756 Msa0653090:three_prime_UTR
CTTCAACCCACCGGAAATCC+CGG 0.509862 4_3:+60919518 Msa0653090:CDS
AGCAGCCATTGAAGAGATGA+AGG 0.510912 4_3:-60919289 None:intergenic
GCCGCATACGAAGAGCTATA+CGG 0.511899 4_3:+60919603 Msa0653090:CDS
GAGAGTAGAGAGAGAGAATG+GGG 0.517435 4_3:-60919427 None:intergenic
TGAAACCTTCATCTCTTCAA+TGG 0.518988 4_3:+60919284 Msa0653090:exon
AAGACGGCGAGGAAGGATAC+CGG 0.519140 4_3:+60919678 Msa0653090:CDS
AAAAGTCAAGTACTTAGTCA+TGG 0.522858 4_3:-60919934 None:intergenic
TACTTCCATAATTCTTCCAT+AGG 0.523427 4_3:-60921698 None:intergenic
AGAAGGAAAAGATAAGAGAT+GGG 0.524914 4_3:+60919718 Msa0653090:CDS
TTAAAGGAGGGAAACAAATG+AGG 0.524916 4_3:+60919784 Msa0653090:CDS
AAGAAAGAGTTGTTCAAGTG+AGG 0.526597 4_3:+60919745 Msa0653090:CDS
GTTACGAAGGTTGTTAAAGG+AGG 0.526853 4_3:+60919771 Msa0653090:CDS
CTTCGCACCCGAACCGAACC+CGG 0.526945 4_3:-60919697 None:intergenic
AAGCCTTCCGGGATTTCCGG+TGG 0.529062 4_3:-60919525 None:intergenic
ATGTGAGTTTGTGGGTTGTG+GGG 0.529517 4_3:-60919389 None:intergenic
GACAAGGACTGTAAGGAACT+TGG 0.530200 4_3:+60922078 Msa0653090:three_prime_UTR
GGGATTTCCGGTGGGTTGAA+GGG 0.530494 4_3:-60919516 None:intergenic
GATGGTGTTGTCGAATTCAT+CGG 0.536992 4_3:-60919478 None:intergenic
AGAAATCTGCTATTAATGCT+AGG 0.542732 4_3:+60919892 Msa0653090:CDS
GATGAAGGTTTCAGTGTGAG+AGG 0.547580 4_3:-60919274 None:intergenic
CCGTCGTCTATGGAAGGTGG+TGG 0.551471 4_3:-60919552 None:intergenic
AATGCTTTGGGGAAACAACT+AGG 0.554037 4_3:+60921584 Msa0653090:CDS
TGAGTTTGTGGGTTGTGGGG+AGG 0.554542 4_3:-60919386 None:intergenic
GTTGTCGAATTCATCGGAGG+TGG 0.557558 4_3:-60919472 None:intergenic
GTTAGAGAAAGTTACCTATG+AGG 0.558410 4_3:-60919957 None:intergenic
GATGGATAAGACGGCGAGGA+AGG 0.559767 4_3:+60919671 Msa0653090:CDS
TGGAAATGATATAAATGTGA+TGG 0.562907 4_3:+60919653 Msa0653090:CDS
CCTGCAATAACTCCGGTACC+AGG 0.564590 4_3:-60921521 None:intergenic
AAAGTCAAGTACTTAGTCAT+GGG 0.565442 4_3:-60919933 None:intergenic
TGAGGAGCGTGGGATCCCTA+TGG 0.565454 4_3:+60921682 Msa0653090:CDS
ACTTCCATAATTCTTCCATA+GGG 0.566653 4_3:-60921697 None:intergenic
TGGAGATTATGGAGCGTCAA+AGG 0.569341 4_3:+60921478 Msa0653090:CDS
ACTCCGGTACCAGGAGAAGC+GGG 0.569424 4_3:-60921512 None:intergenic
AGTGAGGTCGCTGAGGAGCG+TGG 0.573201 4_3:+60921671 Msa0653090:CDS
AGACCCGCTTCTCCTGGTAC+CGG 0.574190 4_3:+60921509 Msa0653090:CDS
GGTACCGGAGTTATTGCAGG+TGG 0.578070 4_3:+60921524 Msa0653090:CDS
AACTCCGGTACCAGGAGAAG+CGG 0.582114 4_3:-60921513 None:intergenic
AGAATTGTTCTTGAAATGGC+CGG 0.583079 4_3:+60921554 Msa0653090:CDS
TTACGAAGGTTGTTAAAGGA+GGG 0.584504 4_3:+60919772 Msa0653090:CDS
AACAGTTGGAACACTTTCTG+AGG 0.587078 4_3:-60921787 None:intergenic
GTGAGGTCGCTGAGGAGCGT+GGG 0.589602 4_3:+60921672 Msa0653090:CDS
GGGGAGGAGAGAGAAACAAG+AGG 0.595007 4_3:-60919370 None:intergenic
AAGAGGAGGAAGAAGATGAA+CGG 0.598638 4_3:-60919353 None:intergenic
CCCCAAAGCATTCTCAACAC+CGG 0.599175 4_3:-60921573 None:intergenic
AGCCTTCCGGGATTTCCGGT+GGG 0.602553 4_3:-60919524 None:intergenic
AGACGGCGAGGAAGGATACC+GGG 0.603653 4_3:+60919679 Msa0653090:CDS
GAGGAGAGAGAAACAAGAGG+AGG 0.603782 4_3:-60919367 None:intergenic
CCATGACGTATTCTTAAAGG+AGG 0.605119 4_3:-60922012 None:intergenic
ACTGGACCGTCGTCTATGGA+AGG 0.605529 4_3:-60919558 None:intergenic
TATAAATGTGATGGATAAGA+CGG 0.605582 4_3:+60919662 Msa0653090:CDS
GGGAATTGCTTTGACCGCGA+AGG 0.607546 4_3:-60919451 None:intergenic
TTGACGTATGAAAATCACAT+TGG 0.614187 4_3:-60921736 None:intergenic
AGACCTTCCCTTCAACCCAC+CGG 0.615775 4_3:+60919509 Msa0653090:CDS
GCAGTACAGTGAGGTCGCTG+AGG 0.616630 4_3:+60921664 Msa0653090:CDS
TTGTCGAATTCATCGGAGGT+GGG 0.616706 4_3:-60919471 None:intergenic
GTTGTTGTTGGTGATAAGCA+AGG 0.618084 4_3:+60919819 Msa0653090:CDS
AAGCAAGGACGAGTTGGTGT+TGG 0.635148 4_3:+60919834 Msa0653090:CDS
GGTGATAAGCAAGGACGAGT+TGG 0.638537 4_3:+60919828 Msa0653090:CDS
TGTTGGTGTTGGGAAAGCTA+AGG 0.639378 4_3:+60919851 Msa0653090:CDS
CCTCCTTTAAGAATACGTCA+TGG 0.640226 4_3:+60922012 Msa0653090:three_prime_UTR
ACCGTATAGCTCTTCGTATG+CGG 0.640746 4_3:-60919604 None:intergenic
AGACCCACCTGCAATAACTC+CGG 0.641456 4_3:-60921528 None:intergenic
TCAAGTGAGGAGGGTTACGA+AGG 0.645808 4_3:+60919758 Msa0653090:CDS
AACCCACCGGAAATCCCGGA+AGG 0.651503 4_3:+60919522 Msa0653090:CDS
GGACCGTCGTCTATGGAAGG+TGG 0.656325 4_3:-60919555 None:intergenic
AATCTGCTATTAATGCTAGG+AGG 0.657188 4_3:+60919895 Msa0653090:CDS
CTATACGGTGTGGCGTACAG+TGG 0.669321 4_3:+60919618 Msa0653090:CDS
GTACCGGAGTTATTGCAGGT+GGG 0.671941 4_3:+60921525 Msa0653090:CDS
GAAAATGAAGCAGTACAGTG+AGG 0.690707 4_3:+60921655 Msa0653090:CDS
GTATAGCTCTTCGTATGCGG+CGG 0.690747 4_3:-60919601 None:intergenic
GGTGTTGTCGAATTCATCGG+AGG 0.692934 4_3:-60919475 None:intergenic
ATGTGATGGATAAGACGGCG+AGG 0.709872 4_3:+60919667 Msa0653090:CDS
CCACCACCTTCCATAGACGA+CGG 0.718416 4_3:+60919552 Msa0653090:CDS
ATACGAAGAGCTATACGGTG+TGG 0.743299 4_3:+60919608 Msa0653090:CDS
CCGGTGTTGAGAATGCTTTG+GGG 0.778015 4_3:+60921573 Msa0653090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTCATCAATCTTAATTT+TGG + chr4_3:60919986-60920005 Msa0653090:intron 15.0%
!! AATTTAAAAGCAAAAATACA+AGG - chr4_3:60921947-60921966 None:intergenic 15.0%
!! AAACTTATGGATGAAAAAAT+TGG + chr4_3:60920242-60920261 Msa0653090:intron 20.0%
!! AACTTATGGATGAAAAAATT+GGG + chr4_3:60920243-60920262 Msa0653090:intron 20.0%
!! ATTATGAATAATGCAATTCA+AGG - chr4_3:60920492-60920511 None:intergenic 20.0%
!! TAAATTTCCTTAACTCAAAT+AGG + chr4_3:60921275-60921294 Msa0653090:intron 20.0%
!! TATATACGACATAAAATTAG+TGG - chr4_3:60921440-60921459 None:intergenic 20.0%
!!! TTGATTTGAAAAAATTGACA+AGG + chr4_3:60922062-60922081 Msa0653090:three_prime_UTR 20.0%
! TGGAAATGATATAAATGTGA+TGG + chr4_3:60919653-60919672 Msa0653090:CDS 25.0%
!!! TATAAATGTGATGGATAAGA+CGG + chr4_3:60919662-60919681 Msa0653090:CDS 25.0%
!!! GGTTTTGAATTTGAAACTTA+TGG + chr4_3:60920229-60920248 Msa0653090:intron 25.0%
! ATTTGGATATTTGTGCATAT+AGG + chr4_3:60920532-60920551 Msa0653090:intron 25.0%
!! AATATAATGAAGCATTCTTG+TGG + chr4_3:60920597-60920616 Msa0653090:intron 25.0%
!! CTAATTTTTCTTTGACATGA+TGG + chr4_3:60920681-60920700 Msa0653090:intron 25.0%
! TATCATTATCACTATGTTTC+CGG + chr4_3:60920818-60920837 Msa0653090:intron 25.0%
! AAATATCCACCATATAAGAA+GGG - chr4_3:60920866-60920885 None:intergenic 25.0%
!!! ATTTTTACATAGAGCATTAC+AGG - chr4_3:60920971-60920990 None:intergenic 25.0%
! TGAGAAACGAATATGAAATA+TGG + chr4_3:60920990-60921009 Msa0653090:intron 25.0%
!!! AATTTGCTATTAGCATTTAC+TGG + chr4_3:60921019-60921038 Msa0653090:intron 25.0%
! TGAGTTAAGGAAATTTAACA+GGG - chr4_3:60921272-60921291 None:intergenic 25.0%
! TTGAGTTAAGGAAATTTAAC+AGG - chr4_3:60921273-60921292 None:intergenic 25.0%
!!! AGATGGAACTTTTATTTCAA+AGG + chr4_3:60921328-60921347 Msa0653090:intron 25.0%
! CTAACTAGAGATAAGGTTTT+TGG - chr4_3:60919193-60919212 None:intergenic 30.0%
GCAAAAACTAACTAGAGATA+AGG - chr4_3:60919200-60919219 None:intergenic 30.0%
AAGAAGGAAAAGATAAGAGA+TGG + chr4_3:60919717-60919736 Msa0653090:CDS 30.0%
AGAAGGAAAAGATAAGAGAT+GGG + chr4_3:60919718-60919737 Msa0653090:CDS 30.0%
AGAAATCTGCTATTAATGCT+AGG + chr4_3:60919892-60919911 Msa0653090:CDS 30.0%
AAAGTCAAGTACTTAGTCAT+GGG - chr4_3:60919936-60919955 None:intergenic 30.0%
AAAAGTCAAGTACTTAGTCA+TGG - chr4_3:60919937-60919956 None:intergenic 30.0%
CTAAACTAATCTCATTTACG+TGG - chr4_3:60920126-60920145 None:intergenic 30.0%
TTATGGATGAAAAAATTGGG+TGG + chr4_3:60920246-60920265 Msa0653090:intron 30.0%
! AGATTAGTCATTAGCATAGT+TGG + chr4_3:60920289-60920308 Msa0653090:intron 30.0%
ATTCCTTCTTCTATTCTCAA+TGG + chr4_3:60920370-60920389 Msa0653090:intron 30.0%
ACAATGTTAAGAACACAAGA+AGG - chr4_3:60920448-60920467 None:intergenic 30.0%
CATTGTATTAGAGCTTCATT+TGG + chr4_3:60920515-60920534 Msa0653090:intron 30.0%
TTTGTGCATATAGGAGTTAT+TGG + chr4_3:60920541-60920560 Msa0653090:intron 30.0%
TTGTGCATATAGGAGTTATT+GGG + chr4_3:60920542-60920561 Msa0653090:intron 30.0%
! GTTTTCCTGAATTTCAAATG+AGG - chr4_3:60920570-60920589 None:intergenic 30.0%
CAAATATCCACCATATAAGA+AGG - chr4_3:60920867-60920886 None:intergenic 30.0%
!! TTATATGGTGGATATTTGTC+TGG + chr4_3:60920869-60920888 Msa0653090:intron 30.0%
CCACAATGTCATTAATATAG+AGG - chr4_3:60920895-60920914 None:intergenic 30.0%
CCTCTATATTAATGACATTG+TGG + chr4_3:60920892-60920911 Msa0653090:intron 30.0%
ATGAATGCCTAAGTAACTTA+TGG + chr4_3:60921220-60921239 Msa0653090:intron 30.0%
ATCTTAATAGGTTGCTTAAG+TGG - chr4_3:60921246-60921265 None:intergenic 30.0%
TTAACAGGGAACATCTTAAT+AGG - chr4_3:60921258-60921277 None:intergenic 30.0%
! TTCAGTTCCTATTTGAGTTA+AGG - chr4_3:60921285-60921304 None:intergenic 30.0%
AATTCTAGCATCTTAGAACA+CGG - chr4_3:60921385-60921404 None:intergenic 30.0%
TGTGAGAATTGTTCTTGAAA+TGG + chr4_3:60921550-60921569 Msa0653090:CDS 30.0%
ACTTCCATAATTCTTCCATA+GGG - chr4_3:60921700-60921719 None:intergenic 30.0%
TACTTCCATAATTCTTCCAT+AGG - chr4_3:60921701-60921720 None:intergenic 30.0%
TTGACGTATGAAAATCACAT+TGG - chr4_3:60921739-60921758 None:intergenic 30.0%
AAGAAACTTACAACAACAGT+TGG - chr4_3:60921804-60921823 None:intergenic 30.0%
AACTGTTGTTGTAAGTTTCT+TGG + chr4_3:60921803-60921822 Msa0653090:three_prime_UTR 30.0%
ATGATTATCCAATTTATGCC+TGG + chr4_3:60921897-60921916 Msa0653090:three_prime_UTR 30.0%
!! ATCTAAGTTTTGTCAAAACC+AGG - chr4_3:60921918-60921937 None:intergenic 30.0%
ATTCCATGACGTATTCTTAA+AGG - chr4_3:60922018-60922037 None:intergenic 30.0%
AAAAATTGACAAGGACTGTA+AGG + chr4_3:60922071-60922090 Msa0653090:three_prime_UTR 30.0%
TGAAACCTTCATCTCTTCAA+TGG + chr4_3:60919284-60919303 Msa0653090:exon 35.0%
AAGAAAGAGTTGTTCAAGTG+AGG + chr4_3:60919745-60919764 Msa0653090:CDS 35.0%
TTACGAAGGTTGTTAAAGGA+GGG + chr4_3:60919772-60919791 Msa0653090:CDS 35.0%
TTAAAGGAGGGAAACAAATG+AGG + chr4_3:60919784-60919803 Msa0653090:CDS 35.0%
AGGGAAACAAATGAGGTTTA+GGG + chr4_3:60919791-60919810 Msa0653090:CDS 35.0%
! TTTAGGGCTATTGTTGTTGT+TGG + chr4_3:60919807-60919826 Msa0653090:CDS 35.0%
AATCTGCTATTAATGCTAGG+AGG + chr4_3:60919895-60919914 Msa0653090:CDS 35.0%
! AGTACTTGACTTTTCCTCAT+AGG + chr4_3:60919943-60919962 Msa0653090:CDS 35.0%
GTTAGAGAAAGTTACCTATG+AGG - chr4_3:60919960-60919979 None:intergenic 35.0%
CTTATTCCACTAAGTGAGTT+CGG - chr4_3:60920074-60920093 None:intergenic 35.0%
!! ATGAGAAACTTGTTGACCAA+TGG + chr4_3:60920167-60920186 Msa0653090:intron 35.0%
!! TGAGAAACTTGTTGACCAAT+GGG + chr4_3:60920168-60920187 Msa0653090:intron 35.0%
TTGGCAAATGCTTTGACATA+TGG + chr4_3:60920308-60920327 Msa0653090:intron 35.0%
ACATATGGCATGATAGTCAA+AGG + chr4_3:60920323-60920342 Msa0653090:intron 35.0%
GCATGATAGTCAAAGGTAAA+GGG + chr4_3:60920330-60920349 Msa0653090:intron 35.0%
CATGATAGTCAAAGGTAAAG+GGG + chr4_3:60920331-60920350 Msa0653090:intron 35.0%
GTTCCATTGAGAATAGAAGA+AGG - chr4_3:60920376-60920395 None:intergenic 35.0%
GATAGAAACAAGCAAAGGTA+AGG - chr4_3:60920411-60920430 None:intergenic 35.0%
AACTCGATAGAAACAAGCAA+AGG - chr4_3:60920416-60920435 None:intergenic 35.0%
ACTTTGTGTACTGAACATTG+AGG + chr4_3:60920644-60920663 Msa0653090:intron 35.0%
CAAAGCAGATTCCACTATAT+AGG - chr4_3:60920918-60920937 None:intergenic 35.0%
! ATATAGTGGAATCTGCTTTG+TGG + chr4_3:60920918-60920937 Msa0653090:intron 35.0%
ACCATCAAATGCTCAAATGA+AGG - chr4_3:60921045-60921064 None:intergenic 35.0%
AGATGCGTTATATTCAGCTT+TGG - chr4_3:60921083-60921102 None:intergenic 35.0%
GAATATAACGCATCTGATTG+AGG + chr4_3:60921088-60921107 Msa0653090:intron 35.0%
TGCGATAAGCATTCACAAAT+GGG - chr4_3:60921181-60921200 None:intergenic 35.0%
TAAGTGGCCATAAGTTACTT+AGG - chr4_3:60921230-60921249 None:intergenic 35.0%
ATTCTAGCATCTTAGAACAC+GGG - chr4_3:60921384-60921403 None:intergenic 35.0%
! TAATGTTTTTCCAGAGCTGA+TGG + chr4_3:60921458-60921477 Msa0653090:intron 35.0%
AGAATTGTTCTTGAAATGGC+CGG + chr4_3:60921554-60921573 Msa0653090:CDS 35.0%
CAATCATTGTGATGTAGAAC+TGG + chr4_3:60921756-60921775 Msa0653090:three_prime_UTR 35.0%
TGTCAAAACCAGGCATAAAT+TGG - chr4_3:60921908-60921927 None:intergenic 35.0%
AGAGAATTGAGAGCAGAAGA+AGG - chr4_3:60919318-60919337 None:intergenic 40.0%
AAGAGGAGGAAGAAGATGAA+CGG - chr4_3:60919356-60919375 None:intergenic 40.0%
! AATGTGAGTTTGTGGGTTGT+GGG - chr4_3:60919393-60919412 None:intergenic 40.0%
AGAGAGTAGAGAGAGAGAAT+GGG - chr4_3:60919431-60919450 None:intergenic 40.0%
!! GATGGTGTTGTCGAATTCAT+CGG - chr4_3:60919481-60919500 None:intergenic 40.0%
ATTTCATCTTCGTCTTCGAC+TGG - chr4_3:60919579-60919598 None:intergenic 40.0%
GGAAAAGATAAGAGATGGGT+TGG + chr4_3:60919722-60919741 Msa0653090:CDS 40.0%
AAAGAGTTGTTCAAGTGAGG+AGG + chr4_3:60919748-60919767 Msa0653090:CDS 40.0%
AAGAGTTGTTCAAGTGAGGA+GGG + chr4_3:60919749-60919768 Msa0653090:CDS 40.0%
AGGGTTACGAAGGTTGTTAA+AGG + chr4_3:60919768-60919787 Msa0653090:CDS 40.0%
GTTACGAAGGTTGTTAAAGG+AGG + chr4_3:60919771-60919790 Msa0653090:CDS 40.0%
GAGGGAAACAAATGAGGTTT+AGG + chr4_3:60919790-60919809 Msa0653090:CDS 40.0%
!! GTTGTTGTTGGTGATAAGCA+AGG + chr4_3:60919819-60919838 Msa0653090:CDS 40.0%
ACTAAGTGAGTTCGGTTACA+TGG - chr4_3:60920066-60920085 None:intergenic 40.0%
ATGTAACCGAACTCACTTAG+TGG + chr4_3:60920065-60920084 Msa0653090:intron 40.0%
CGAACTCACTTAGTGGAATA+AGG + chr4_3:60920072-60920091 Msa0653090:intron 40.0%
TTGACCAATGGGAAACTTGT+TGG + chr4_3:60920179-60920198 Msa0653090:intron 40.0%
GGATGAAAAAATTGGGTGGT+TGG + chr4_3:60920250-60920269 Msa0653090:intron 40.0%
GGCATGATAGTCAAAGGTAA+AGG + chr4_3:60920329-60920348 Msa0653090:intron 40.0%
AAAGGTAAAGGGGAAATCCT+TGG + chr4_3:60920341-60920360 Msa0653090:intron 40.0%
! GGGTACCTCATTTGAAATTC+AGG + chr4_3:60920562-60920581 Msa0653090:intron 40.0%
ACATTGAGGTAGAACAGACT+CGG + chr4_3:60920658-60920677 Msa0653090:intron 40.0%
TGTCATGCATAATGCAATGC+TGG - chr4_3:60920754-60920773 None:intergenic 40.0%
TGACATTGTGGCCTATATAG+TGG + chr4_3:60920904-60920923 Msa0653090:intron 40.0%
GCCTTCATTTGAGCATTTGA+TGG + chr4_3:60921041-60921060 Msa0653090:intron 40.0%
! TATTCAGCTTTGGTATCCCT+CGG - chr4_3:60921073-60921092 None:intergenic 40.0%
CATCTGATTGAGGTTGTAGT+TGG + chr4_3:60921098-60921117 Msa0653090:intron 40.0%
CTGCGATAAGCATTCACAAA+TGG - chr4_3:60921182-60921201 None:intergenic 40.0%
AATGCTTATCGCAGCTGAAA+GGG + chr4_3:60921188-60921207 Msa0653090:intron 40.0%
TTCTAGCATCTTAGAACACG+GGG - chr4_3:60921383-60921402 None:intergenic 40.0%
!! AATGCTTTGGGGAAACAACT+AGG + chr4_3:60921584-60921603 Msa0653090:CDS 40.0%
GAAAATGAAGCAGTACAGTG+AGG + chr4_3:60921655-60921674 Msa0653090:CDS 40.0%
GGATCCCTATGGAAGAATTA+TGG + chr4_3:60921693-60921712 Msa0653090:CDS 40.0%
AACAGTTGGAACACTTTCTG+AGG - chr4_3:60921790-60921809 None:intergenic 40.0%
GCAAGTGAAGAATGTGATTC+AGG - chr4_3:60921861-60921880 None:intergenic 40.0%
CCATGACGTATTCTTAAAGG+AGG - chr4_3:60922015-60922034 None:intergenic 40.0%
! CCTCCTTTAAGAATACGTCA+TGG + chr4_3:60922012-60922031 Msa0653090:three_prime_UTR 40.0%
GATGAAGGTTTCAGTGTGAG+AGG - chr4_3:60919277-60919296 None:intergenic 45.0%
AGCAGCCATTGAAGAGATGA+AGG - chr4_3:60919292-60919311 None:intergenic 45.0%
! ATGTGAGTTTGTGGGTTGTG+GGG - chr4_3:60919392-60919411 None:intergenic 45.0%
! GAATGTGAGTTTGTGGGTTG+TGG - chr4_3:60919394-60919413 None:intergenic 45.0%
GAGAGGGAATGTGAGTTTGT+GGG - chr4_3:60919400-60919419 None:intergenic 45.0%
TGAGAGGGAATGTGAGTTTG+TGG - chr4_3:60919401-60919420 None:intergenic 45.0%
!! AGAATGGGGTTTTGGTGAGA+GGG - chr4_3:60919416-60919435 None:intergenic 45.0%
! AGAGAGAGAGAATGGGGTTT+TGG - chr4_3:60919424-60919443 None:intergenic 45.0%
GAGAGTAGAGAGAGAGAATG+GGG - chr4_3:60919430-60919449 None:intergenic 45.0%
GAGAGAGTAGAGAGAGAGAA+TGG - chr4_3:60919432-60919451 None:intergenic 45.0%
TTGTCGAATTCATCGGAGGT+GGG - chr4_3:60919474-60919493 None:intergenic 45.0%
TGAAGGGAAGGTCTTCTTCT+GGG - chr4_3:60919503-60919522 None:intergenic 45.0%
TTGAAGGGAAGGTCTTCTTC+TGG - chr4_3:60919504-60919523 None:intergenic 45.0%
ACCGTATAGCTCTTCGTATG+CGG - chr4_3:60919607-60919626 None:intergenic 45.0%
ATACGAAGAGCTATACGGTG+TGG + chr4_3:60919608-60919627 Msa0653090:CDS 45.0%
! TACAGTGGTGTTAGTGTGCT+TGG + chr4_3:60919633-60919652 Msa0653090:CDS 45.0%
!! TGTTGGTGTTGGGAAAGCTA+AGG + chr4_3:60919851-60919870 Msa0653090:CDS 45.0%
TGGAACTGGACTCTGATGTA+AGG + chr4_3:60920208-60920227 Msa0653090:intron 45.0%
GAAGAAGGAATTCTCCACCA+AGG - chr4_3:60920361-60920380 None:intergenic 45.0%
! AGGTCACACACGAAGTATCA+AGG - chr4_3:60920472-60920491 None:intergenic 45.0%
AGAACCTAATCAGACAGGTC+TGG - chr4_3:60920710-60920729 None:intergenic 45.0%
GACACAGAACCTAATCAGAC+AGG - chr4_3:60920715-60920734 None:intergenic 45.0%
TGCATGACAGATTCTGTGCT+AGG + chr4_3:60920765-60920784 Msa0653090:intron 45.0%
TGTTTCCGGCTTTCTGCTAT+AGG + chr4_3:60920832-60920851 Msa0653090:intron 45.0%
GTCGCAATGCCCTTCTTATA+TGG + chr4_3:60920854-60920873 Msa0653090:intron 45.0%
GCAATGCCCTTCTTATATGG+TGG + chr4_3:60920857-60920876 Msa0653090:intron 45.0%
! ATTCAGCTTTGGTATCCCTC+GGG - chr4_3:60921072-60921091 None:intergenic 45.0%
AACACGTATGCAGCGATCTA+CGG - chr4_3:60921153-60921172 None:intergenic 45.0%
TAGATCGCTGCATACGTGTT+TGG + chr4_3:60921153-60921172 Msa0653090:intron 45.0%
GAATGCTTATCGCAGCTGAA+AGG + chr4_3:60921187-60921206 Msa0653090:intron 45.0%
AGTCTCTTCTTGCTGAGAGA+TGG + chr4_3:60921311-60921330 Msa0653090:intron 45.0%
TCCAGAGCTGATGGAGATTA+TGG + chr4_3:60921467-60921486 Msa0653090:intron 45.0%
TCCATAATCTCCATCAGCTC+TGG - chr4_3:60921471-60921490 None:intergenic 45.0%
! TGGAGATTATGGAGCGTCAA+AGG + chr4_3:60921478-60921497 Msa0653090:CDS 45.0%
GACAAGGACTGTAAGGAACT+TGG + chr4_3:60922078-60922097 Msa0653090:three_prime_UTR 45.0%
GAGGAGAGAGAAACAAGAGG+AGG - chr4_3:60919370-60919389 None:intergenic 50.0%
!! GAGAATGGGGTTTTGGTGAG+AGG - chr4_3:60919417-60919436 None:intergenic 50.0%
TCTCTCTACTCTCTCCTTCG+CGG + chr4_3:60919437-60919456 Msa0653090:CDS 50.0%
GTTGTCGAATTCATCGGAGG+TGG - chr4_3:60919475-60919494 None:intergenic 50.0%
! GGTGTTGTCGAATTCATCGG+AGG - chr4_3:60919478-60919497 None:intergenic 50.0%
ATGAAGCCTTCCGGGATTTC+CGG - chr4_3:60919531-60919550 None:intergenic 50.0%
GTATAGCTCTTCGTATGCGG+CGG - chr4_3:60919604-60919623 None:intergenic 50.0%
GCCGCATACGAAGAGCTATA+CGG + chr4_3:60919603-60919622 Msa0653090:CDS 50.0%
!! ATGTGATGGATAAGACGGCG+AGG + chr4_3:60919667-60919686 Msa0653090:CDS 50.0%
TCAAGTGAGGAGGGTTACGA+AGG + chr4_3:60919758-60919777 Msa0653090:CDS 50.0%
GGTGATAAGCAAGGACGAGT+TGG + chr4_3:60919828-60919847 Msa0653090:CDS 50.0%
!! AAGCAAGGACGAGTTGGTGT+TGG + chr4_3:60919834-60919853 Msa0653090:CDS 50.0%
!! GACGAGTTGGTGTTGGTGTT+GGG + chr4_3:60919841-60919860 Msa0653090:CDS 50.0%
CGGACCAACAAGTTTCCCAT+TGG - chr4_3:60920186-60920205 None:intergenic 50.0%
CATCAGAGTCCAGTTCCACT+CGG - chr4_3:60920206-60920225 None:intergenic 50.0%
GGTAAAGGGGAAATCCTTGG+TGG + chr4_3:60920344-60920363 Msa0653090:intron 50.0%
GAAGCCAGACCTGTCTGATT+AGG + chr4_3:60920703-60920722 Msa0653090:intron 50.0%
! GATTCTGTGCTAGGTGCCAT+AGG + chr4_3:60920774-60920793 Msa0653090:intron 50.0%
AAGATAGTCGCTGCTGCCTA+TGG - chr4_3:60920793-60920812 None:intergenic 50.0%
TGCGACCTATAGCAGAAAGC+CGG - chr4_3:60920840-60920859 None:intergenic 50.0%
! CATTTGATGGTTCTCCCCGA+GGG + chr4_3:60921054-60921073 Msa0653090:intron 50.0%
! TTCAGCTTTGGTATCCCTCG+GGG - chr4_3:60921071-60921090 None:intergenic 50.0%
GTACCGGAGTTATTGCAGGT+GGG + chr4_3:60921525-60921544 Msa0653090:CDS 50.0%
AGACCCACCTGCAATAACTC+CGG - chr4_3:60921531-60921550 None:intergenic 50.0%
! GCCGGTGTTGAGAATGCTTT+GGG + chr4_3:60921572-60921591 Msa0653090:CDS 50.0%
! CCCCAAAGCATTCTCAACAC+CGG - chr4_3:60921576-60921595 None:intergenic 50.0%
! CCGGTGTTGAGAATGCTTTG+GGG + chr4_3:60921573-60921592 Msa0653090:CDS 50.0%
GGGGAGGAGAGAGAAACAAG+AGG - chr4_3:60919373-60919392 None:intergenic 55.0%
! TGAGTTTGTGGGTTGTGGGG+AGG - chr4_3:60919389-60919408 None:intergenic 55.0%
GGGAATTGCTTTGACCGCGA+AGG - chr4_3:60919454-60919473 None:intergenic 55.0%
! GGGAAGGTCTTCTTCTGGGA+TGG - chr4_3:60919499-60919518 None:intergenic 55.0%
AGACCTTCCCTTCAACCCAC+CGG + chr4_3:60919509-60919528 Msa0653090:CDS 55.0%
!! TTTCCGGTGGGTTGAAGGGA+AGG - chr4_3:60919515-60919534 None:intergenic 55.0%
!! GGGATTTCCGGTGGGTTGAA+GGG - chr4_3:60919519-60919538 None:intergenic 55.0%
CTTCAACCCACCGGAAATCC+CGG + chr4_3:60919518-60919537 Msa0653090:CDS 55.0%
! GTGGTGGAATGAAGCCTTCC+GGG - chr4_3:60919539-60919558 None:intergenic 55.0%
!! GGTGGTGGAATGAAGCCTTC+CGG - chr4_3:60919540-60919559 None:intergenic 55.0%
CCACCACCTTCCATAGACGA+CGG + chr4_3:60919552-60919571 Msa0653090:CDS 55.0%
ACTGGACCGTCGTCTATGGA+AGG - chr4_3:60919561-60919580 None:intergenic 55.0%
TTCGACTGGACCGTCGTCTA+TGG - chr4_3:60919565-60919584 None:intergenic 55.0%
CTATACGGTGTGGCGTACAG+TGG + chr4_3:60919618-60919637 Msa0653090:CDS 55.0%
GATGGATAAGACGGCGAGGA+AGG + chr4_3:60919671-60919690 Msa0653090:CDS 55.0%
AAGACGGCGAGGAAGGATAC+CGG + chr4_3:60919678-60919697 Msa0653090:CDS 55.0%
! GAAGGATACCGGGTTCGGTT+CGG + chr4_3:60919689-60919708 Msa0653090:CDS 55.0%
! AAGGATACCGGGTTCGGTTC+GGG + chr4_3:60919690-60919709 Msa0653090:CDS 55.0%
!! GGACGAGTTGGTGTTGGTGT+TGG + chr4_3:60919840-60919859 Msa0653090:CDS 55.0%
!! GGGAAACTTGTTGGTCCGAG+TGG + chr4_3:60920188-60920207 Msa0653090:intron 55.0%
CTTGTTGGTCCGAGTGGAAC+TGG + chr4_3:60920194-60920213 Msa0653090:intron 55.0%
! GCATTTGATGGTTCTCCCCG+AGG + chr4_3:60921053-60921072 Msa0653090:intron 55.0%
TATGCAGCGATCTACGGCAG+AGG - chr4_3:60921147-60921166 None:intergenic 55.0%
ATGCTTAGACCCGCTTCTCC+TGG + chr4_3:60921503-60921522 Msa0653090:CDS 55.0%
AACTCCGGTACCAGGAGAAG+CGG - chr4_3:60921516-60921535 None:intergenic 55.0%
CCTGCAATAACTCCGGTACC+AGG - chr4_3:60921524-60921543 None:intergenic 55.0%
! CCTGGTACCGGAGTTATTGC+AGG + chr4_3:60921521-60921540 Msa0653090:CDS 55.0%
! GGTACCGGAGTTATTGCAGG+TGG + chr4_3:60921524-60921543 Msa0653090:CDS 55.0%
! GGCCGGTGTTGAGAATGCTT+TGG + chr4_3:60921571-60921590 Msa0653090:CDS 55.0%
CACTGCAGCTACAGTTGCTC+TGG - chr4_3:60921633-60921652 None:intergenic 55.0%
!! CGGGATTTCCGGTGGGTTGA+AGG - chr4_3:60919520-60919539 None:intergenic 60.0%
AACCCACCGGAAATCCCGGA+AGG + chr4_3:60919522-60919541 Msa0653090:CDS 60.0%
AGCCTTCCGGGATTTCCGGT+GGG - chr4_3:60919527-60919546 None:intergenic 60.0%
AAGCCTTCCGGGATTTCCGG+TGG - chr4_3:60919528-60919547 None:intergenic 60.0%
CCGTCGTCTATGGAAGGTGG+TGG - chr4_3:60919555-60919574 None:intergenic 60.0%
GGACCGTCGTCTATGGAAGG+TGG - chr4_3:60919558-60919577 None:intergenic 60.0%
AGACGGCGAGGAAGGATACC+GGG + chr4_3:60919679-60919698 Msa0653090:CDS 60.0%
GCGAGGAAGGATACCGGGTT+CGG + chr4_3:60919684-60919703 Msa0653090:CDS 60.0%
!! GTTCGGTTCGGGTGCGAAGA+AGG + chr4_3:60919701-60919720 Msa0653090:CDS 60.0%
AGACCCGCTTCTCCTGGTAC+CGG + chr4_3:60921509-60921528 Msa0653090:CDS 60.0%
ACTCCGGTACCAGGAGAAGC+GGG - chr4_3:60921515-60921534 None:intergenic 60.0%
GCAGTACAGTGAGGTCGCTG+AGG + chr4_3:60921664-60921683 Msa0653090:CDS 60.0%
! TGAGGAGCGTGGGATCCCTA+TGG + chr4_3:60921682-60921701 Msa0653090:CDS 60.0%
CTTCGCACCCGAACCGAACC+CGG - chr4_3:60919700-60919719 None:intergenic 65.0%
AGTGAGGTCGCTGAGGAGCG+TGG + chr4_3:60921671-60921690 Msa0653090:CDS 65.0%
! GTGAGGTCGCTGAGGAGCGT+GGG + chr4_3:60921672-60921691 Msa0653090:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 60919177 60922112 60919177 ID=Msa0653090;Name=Msa0653090
chr4_3 mRNA 60919177 60922112 60919177 ID=Msa0653090-mRNA-1;Parent=Msa0653090;Name=Msa0653090-mRNA-1;_AED=0.03;_eAED=0.03;_QI=126|1|1|1|1|1|2|391|303
chr4_3 exon 60919177 60919964 60919177 ID=Msa0653090-mRNA-1:exon:16590;Parent=Msa0653090-mRNA-1
chr4_3 exon 60921472 60922112 60921472 ID=Msa0653090-mRNA-1:exon:16591;Parent=Msa0653090-mRNA-1
chr4_3 five_prime_UTR 60919177 60919302 60919177 ID=Msa0653090-mRNA-1:five_prime_utr;Parent=Msa0653090-mRNA-1
chr4_3 CDS 60919303 60919964 60919303 ID=Msa0653090-mRNA-1:cds;Parent=Msa0653090-mRNA-1
chr4_3 CDS 60921472 60921721 60921472 ID=Msa0653090-mRNA-1:cds;Parent=Msa0653090-mRNA-1
chr4_3 three_prime_UTR 60921722 60922112 60921722 ID=Msa0653090-mRNA-1:three_prime_utr;Parent=Msa0653090-mRNA-1
Gene Sequence

>Msa0653090

ATGGCTGCTTCACCTTCTTCTGCTCTCAATTCTCTCTCTTCTCTCTCTTTCCGTTCATCTTCTTCCTCCTCTTGTTTCTCTCTCCTCCCCACAACCCACAAACTCACATTCCCTCTCACCAAAACCCCATTCTCTCTCTCTACTCTCTCCTTCGCGGTCAAAGCAATTCCCACCTCCGATGAATTCGACAACACCATCCCAGAAGAAGACCTTCCCTTCAACCCACCGGAAATCCCGGAAGGCTTCATTCCACCACCTTCCATAGACGACGGTCCAGTCGAAGACGAAGATGAAATCGCCGCCGCATACGAAGAGCTATACGGTGTGGCGTACAGTGGTGTTAGTGTGCTTGGAAATGATATAAATGTGATGGATAAGACGGCGAGGAAGGATACCGGGTTCGGTTCGGGTGCGAAGAAGGAAAAGATAAGAGATGGGTTGGAAGAAAGAGTTGTTCAAGTGAGGAGGGTTACGAAGGTTGTTAAAGGAGGGAAACAAATGAGGTTTAGGGCTATTGTTGTTGTTGGTGATAAGCAAGGACGAGTTGGTGTTGGTGTTGGGAAAGCTAAGGAAGTTGTTTCTGCTGTTCAGAAATCTGCTATTAATGCTAGGAGGAATCTTATTAGAGTTCCCATGACTAAGTACTTGACTTTTCCTCATAGAGCTGATGGAGATTATGGAGCGTCAAAGGTGATGCTTAGACCCGCTTCTCCTGGTACCGGAGTTATTGCAGGTGGGTCTGTGAGAATTGTTCTTGAAATGGCCGGTGTTGAGAATGCTTTGGGGAAACAACTAGGAAGTGACAATGCACTCAACAATGCCAGAGCAACTGTAGCTGCAGTGCAGAAAATGAAGCAGTACAGTGAGGTCGCTGAGGAGCGTGGGATCCCTATGGAAGAATTATGGAAGTAG

Protein sequence

>Msa0653090

MAASPSSALNSLSSLSFRSSSSSSCFSLLPTTHKLTFPLTKTPFSLSTLSFAVKAIPTSDEFDNTIPEEDLPFNPPEIPEGFIPPPSIDDGPVEDEDEIAAAYEELYGVAYSGVSVLGNDINVMDKTARKDTGFGSGAKKEKIRDGLEERVVQVRRVTKVVKGGKQMRFRAIVVVGDKQGRVGVGVGKAKEVVSAVQKSAINARRNLIRVPMTKYLTFPHRADGDYGASKVMLRPASPGTGVIAGGSVRIVLEMAGVENALGKQLGSDNALNNARATVAAVQKMKQYSEVAEERGIPMEELWK*