AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0008820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0008820 MtrunA17_Chr1g0146431 88.506 609 29 8 1 603 1 574 0.0 994
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0008820 AT2G25870.1 68.798 516 130 4 90 603 98 584 0.0 677
Msa0008820 AT5G38747.1 57.627 59 22 1 401 459 73 128 2.04e-14 71.6

Find 163 sgRNAs with CRISPR-Local

Find 430 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGGCTTGTTACATCTTT+TGG 0.104044 1_1:+12790049 Msa0008820:CDS
CATATGTTTCATATATTAAA+AGG 0.112234 1_1:-12794668 None:intergenic
CCAGCAATTGCAACCATTTC+GGG 0.172046 1_1:+12788079 Msa0008820:CDS
TTCCAGGGATTGCTTGTTTA+TGG 0.209459 1_1:+12792181 Msa0008820:intron
TGTCATTTATTTGTCATTAT+TGG 0.217372 1_1:+12794583 Msa0008820:three_prime_UTR
CAACAAGTGGATCATGAAAA+AGG 0.221799 1_1:-12792803 None:intergenic
AAACTTTCTTCGATGCAAAT+AGG 0.237939 1_1:-12788197 None:intergenic
CCCTTCTGTTGAAGATCTTC+TGG 0.243748 1_1:+12792953 Msa0008820:CDS
CCCGAAATGGTTGCAATTGC+TGG 0.248358 1_1:-12788079 None:intergenic
ACCAGCAATTGCAACCATTT+CGG 0.249025 1_1:+12788078 Msa0008820:CDS
AGATCATTTATCATTTCTTT+TGG 0.253794 1_1:-12787723 None:intergenic
AGGAAAAGTATTGGATTGTT+TGG 0.271230 1_1:+12791851 Msa0008820:intron
GCAATGTTGCTTTCGTTTCT+CGG 0.271933 1_1:-12787811 None:intergenic
TGGCTGTAACTCATTCATTA+AGG 0.281685 1_1:+12794603 Msa0008820:three_prime_UTR
AATTACCATCTGAACTGTTT+TGG 0.282851 1_1:-12790208 None:intergenic
AAGAAGAAGAAGGAGATTAT+TGG 0.283048 1_1:-12787867 None:intergenic
GCAGGCATGTCTTTACTCTT+TGG 0.308750 1_1:+12792734 Msa0008820:intron
AAGTAACTAACCAAGATTTC+AGG 0.308843 1_1:-12788230 None:intergenic
ATGCTTGAGCTGGCTTCTTT+AGG 0.329248 1_1:+12794325 Msa0008820:CDS
CAGCTATATCTTCTGTGATA+TGG 0.329588 1_1:+12790413 Msa0008820:CDS
AACTCCTTCTTCTTCCTCTT+CGG 0.352512 1_1:-12788161 None:intergenic
TCTTTACTCTTTGGAGAGTA+AGG 0.360636 1_1:+12792743 Msa0008820:CDS
TGAAGAGGCTGAAGTAGAAA+TGG 0.361449 1_1:+12790091 Msa0008820:CDS
GGAAAAGTATTGGATTGTTT+GGG 0.362912 1_1:+12791852 Msa0008820:intron
TTGGTTCGTGGTATATTGTA+TGG 0.364756 1_1:-12792833 None:intergenic
GCCCGATGATCCTGAAATCT+TGG 0.370855 1_1:+12788220 Msa0008820:CDS
GTCAACAAGTTATATACATT+TGG 0.380037 1_1:-12794850 None:intergenic
CCTTTATTTGCAGCTTATGT+TGG 0.380058 1_1:+12789370 Msa0008820:intron
AAGAAGGAGATTATTGGAAA+TGG 0.383365 1_1:-12787861 None:intergenic
TGTCCCAATGGCAATGAAAC+TGG 0.386115 1_1:+12789050 Msa0008820:CDS
GTTGTTGAATGCGACGGAAT+AGG 0.387795 1_1:-12787991 None:intergenic
AACTTTCTTCGATGCAAATA+GGG 0.388826 1_1:-12788196 None:intergenic
CTTTATTTGCAGCTTATGTT+GGG 0.398548 1_1:+12789371 Msa0008820:intron
ATATGTTTCATATATTAAAA+GGG 0.399604 1_1:-12794667 None:intergenic
ATCTTGCTAACAATTACATT+TGG 0.400144 1_1:+12793341 Msa0008820:CDS
TGAAGGGAGGGTGGCGGAGA+AGG 0.413952 1_1:-12787920 None:intergenic
AAACATATGATAGAAAATTC+AGG 0.417509 1_1:+12794682 Msa0008820:three_prime_UTR
TCTTCTTCCTCTTCGGCGTT+CGG 0.418770 1_1:-12788154 None:intergenic
GACAAGGTCGGGAAATATAT+AGG 0.421336 1_1:+12792206 Msa0008820:CDS
AAAAGAAATGATAAATGATC+TGG 0.428380 1_1:+12787725 Msa0008820:five_prime_UTR
TTATTATCTATCATGTTAAA+CGG 0.430988 1_1:-12794733 None:intergenic
TGATAGATAATAACCCTTGT+TGG 0.432684 1_1:+12794743 Msa0008820:three_prime_UTR
CTGGCATTTGATGGTTTGAA+AGG 0.435654 1_1:+12789069 Msa0008820:CDS
AAAGCTGTGGCAAACGCAAT+TGG 0.436884 1_1:+12794379 Msa0008820:CDS
AAAAGTGCTGCTTGATCACT+TGG 0.439349 1_1:+12793481 Msa0008820:CDS
GGTACAATTTCCAGCATGTC+TGG 0.440193 1_1:-12793431 None:intergenic
TTTAAGAAGGTGGATTTAGC+TGG 0.441156 1_1:+12790821 Msa0008820:CDS
CAGAAGATATAGCTGAACTT+TGG 0.444755 1_1:-12790405 None:intergenic
AATTGCGTTTGCCACAGCTT+TGG 0.449220 1_1:-12794377 None:intergenic
GATAGATAATAACCCTTGTT+GGG 0.450297 1_1:+12794744 Msa0008820:three_prime_UTR
CTTTCGTTTCTCGGCTTAGC+GGG 0.450522 1_1:-12787802 None:intergenic
AACTTACACCTCTGTAGAAA+GGG 0.453153 1_1:-12794486 None:intergenic
CATGCTGGAAATTGTACCCT+TGG 0.454073 1_1:+12793436 Msa0008820:CDS
TCTGGCATCTGCTGACATAC+AGG 0.454582 1_1:+12792971 Msa0008820:CDS
AATGCCAGTTTCATTGCCAT+TGG 0.454647 1_1:-12789054 None:intergenic
CTTAGACACTGCGCAACAAA+AGG 0.456880 1_1:+12793383 Msa0008820:CDS
TGTTTATGGTAGACAAGGTC+GGG 0.459418 1_1:+12792195 Msa0008820:CDS
CGGAATAGGAATGGGATTGA+GGG 0.461244 1_1:-12787977 None:intergenic
TTAGGCATTGCACTGAGTAA+TGG 0.461385 1_1:+12794343 Msa0008820:CDS
GCAATGAAACTGGCATTTGA+TGG 0.464043 1_1:+12789060 Msa0008820:CDS
TCCAACCAAGACTTTGCAAA+AGG 0.464603 1_1:-12790130 None:intergenic
AGTCTTGGTTGGAAAGGAAA+AGG 0.470726 1_1:+12790140 Msa0008820:CDS
AATGAGGCACCTTTGGTTCG+TGG 0.470950 1_1:-12792845 None:intergenic
GCAAGACAAGCAGAGGAAAG+AGG 0.471221 1_1:+12789422 Msa0008820:CDS
CAACTTACACCTCTGTAGAA+AGG 0.477937 1_1:-12794487 None:intergenic
TGGAGTTGAAGGGAGGGTGG+CGG 0.479417 1_1:-12787926 None:intergenic
ATGCCAGTTTCATTGCCATT+GGG 0.481316 1_1:-12789053 None:intergenic
TCAGAATGCATATCGATAGA+TGG 0.486146 1_1:-12794434 None:intergenic
TACCCTTGGGAACATGTAAA+GGG 0.486391 1_1:+12793450 Msa0008820:CDS
GTACCCTTGGGAACATGTAA+AGG 0.489992 1_1:+12793449 Msa0008820:CDS
CTCTCTCTTTCCTCCTCCGT+CGG 0.491250 1_1:-12788114 None:intergenic
ACCAAGATTTCAGGATCATC+GGG 0.495844 1_1:-12788221 None:intergenic
CAAGACAAGCAGAGGAAAGA+GGG 0.496208 1_1:+12789423 Msa0008820:CDS
TTGTTTGGCAGGAAAAGTAT+TGG 0.496289 1_1:+12791842 Msa0008820:intron
ACGGAATAGGAATGGGATTG+AGG 0.497725 1_1:-12787978 None:intergenic
ATTATTGGAAATGGAAGCTA+TGG 0.501536 1_1:-12787852 None:intergenic
GCTGCACGTATTCCCCGAAA+TGG 0.504722 1_1:-12788092 None:intergenic
AACCAAGATTTCAGGATCAT+CGG 0.508129 1_1:-12788222 None:intergenic
TGAGGCCTCTCTCAAAGCCT+TGG 0.508435 1_1:-12790563 None:intergenic
GATATGCAGATAATGGCTAT+TGG 0.510832 1_1:+12794280 Msa0008820:intron
GTGGATTTAGCTGGAAAAGA+TGG 0.511679 1_1:+12790830 Msa0008820:CDS
ATTACCTCTCGACAGACGTC+CGG 0.513505 1_1:-12792241 None:intergenic
TTGCAAAGTCTTGGTTGGAA+AGG 0.513697 1_1:+12790134 Msa0008820:CDS
GGTTTAAGCAACGATGAAGA+TGG 0.514129 1_1:+12794400 Msa0008820:CDS
ATATAGGAGCAGCTTAGATC+CGG 0.515316 1_1:+12792222 Msa0008820:CDS
TCAGAAGCCGAACGCCGAAG+AGG 0.519206 1_1:+12788147 Msa0008820:CDS
TTTCGCGAAGGAAAATGAAT+GGG 0.521861 1_1:-12794535 None:intergenic
CTTGGGAGTTACTGCTAATG+AGG 0.523463 1_1:+12793499 Msa0008820:CDS
GTCAAAGACAGGAAGAAAGA+AGG 0.523896 1_1:+12790363 Msa0008820:intron
GTCTTGGTTGGAAAGGAAAA+GGG 0.525732 1_1:+12790141 Msa0008820:CDS
CTGCTATAGATGATGTTGGC+AGG 0.526203 1_1:+12789115 Msa0008820:CDS
TTTGAGAGAGGCCTCAGCAA+GGG 0.528767 1_1:+12790570 Msa0008820:CDS
GGGAACAATGCTTTGAGCAG+TGG 0.533362 1_1:+12791872 Msa0008820:CDS
CGGCTTAGCGGGAGATGCAA+TGG 0.536046 1_1:-12787791 None:intergenic
GTGAAAATTGTGATAGCCAC+TGG 0.536129 1_1:+12790595 Msa0008820:CDS
ATACGTGCAGCCGACGGAGG+AGG 0.536167 1_1:+12788104 Msa0008820:CDS
GTTCCCTTTACATGTTCCCA+AGG 0.536704 1_1:-12793453 None:intergenic
CCTTCACAAAATGCAATAAG+TGG 0.536888 1_1:-12792768 None:intergenic
AATTTCTACTTCAACTGCCA+AGG 0.539368 1_1:+12790546 Msa0008820:CDS
TGATGAGATCCGTATCCTCA+TGG 0.539656 1_1:+12789457 Msa0008820:CDS
TCAAGCTGTACCAGACATGC+TGG 0.541670 1_1:+12793421 Msa0008820:CDS
TAAAACCAACCATGAGGATA+CGG 0.541816 1_1:-12789466 None:intergenic
GAATGCGACGGAATAGGAAT+GGG 0.544042 1_1:-12787985 None:intergenic
GAAATGGAAGCTATGGCCTA+TGG 0.544426 1_1:-12787845 None:intergenic
ATGCTGGAAATTGTACCCTT+GGG 0.548664 1_1:+12793437 Msa0008820:CDS
TGAATGCGACGGAATAGGAA+TGG 0.553354 1_1:-12787986 None:intergenic
GCCAGAAGATCTTCAACAGA+AGG 0.554050 1_1:-12792954 None:intergenic
TTGTTTATGGTAGACAAGGT+CGG 0.557920 1_1:+12792194 Msa0008820:CDS
CCAAAAGATGTAACAAGCCA+TGG 0.561789 1_1:-12790049 None:intergenic
AACTGCCAAGGCTTTGAGAG+AGG 0.562759 1_1:+12790558 Msa0008820:CDS
TGATCATGAATTAAGTGAAG+AGG 0.564233 1_1:+12790076 Msa0008820:CDS
GCTTTCGTTTCTCGGCTTAG+CGG 0.567166 1_1:-12787803 None:intergenic
ACGTGACATGATGGAGTTGA+AGG 0.567631 1_1:-12787937 None:intergenic
TCAATGTCACAACATGAACC+TGG 0.570480 1_1:+12789237 Msa0008820:CDS
GATACTGCTATAGATGATGT+TGG 0.571424 1_1:+12789111 Msa0008820:CDS
TTGAGAGAGGCCTCAGCAAG+GGG 0.575910 1_1:+12790571 Msa0008820:CDS
TATGTTTCATATATTAAAAG+GGG 0.578053 1_1:-12794666 None:intergenic
GAGGAGGAAAGAGAGAGTAT+CGG 0.580158 1_1:+12788120 Msa0008820:CDS
TCCCACCAAAACAGTTCAGA+TGG 0.584076 1_1:+12790203 Msa0008820:CDS
ATTGCATTCCCTTTCTACAG+AGG 0.586020 1_1:+12794478 Msa0008820:three_prime_UTR
TATATCTTCTGTGATATGGA+TGG 0.587040 1_1:+12790417 Msa0008820:CDS
AACGCCGAAGAGGAAGAAGA+AGG 0.587913 1_1:+12788157 Msa0008820:CDS
TTCCCTTTACATGTTCCCAA+GGG 0.592459 1_1:-12793452 None:intergenic
ACAATAGGAAGATTGAGTCC+AGG 0.593719 1_1:-12789255 None:intergenic
AGTAGAAATGGAGAAAGAAG+AGG 0.597908 1_1:+12790103 Msa0008820:CDS
TATGCATTCTGAGCAGCTGA+AGG 0.600572 1_1:+12794445 Msa0008820:exon
GACAGCAGCAAGACAAGCAG+AGG 0.601250 1_1:+12789415 Msa0008820:CDS
TGATGTAGAGATGCTTGAGC+TGG 0.601463 1_1:+12794315 Msa0008820:CDS
CGGGGAATACGTGCAGCCGA+CGG 0.602788 1_1:+12788098 Msa0008820:CDS
AACGAAAGCAACATTGCTGA+AGG 0.603225 1_1:+12787817 Msa0008820:five_prime_UTR
CTTTGAGAGAGGCCTCAGCA+AGG 0.603249 1_1:+12790569 Msa0008820:CDS
CAGATAATGGCTATTGGTGA+TGG 0.605598 1_1:+12794286 Msa0008820:intron
TACAATATACCACGAACCAA+AGG 0.605692 1_1:+12792836 Msa0008820:CDS
CTCATCATTACAAAGAAGCA+CGG 0.607621 1_1:-12789157 None:intergenic
TTGCTTGTTTATGGTAGACA+AGG 0.609418 1_1:+12792190 Msa0008820:CDS
GGAGGACGAGAGTTACAGAA+AGG 0.611833 1_1:-12788026 None:intergenic
CGTGATGGCACGTGACATGA+TGG 0.615587 1_1:-12787946 None:intergenic
GGAATACGTGCAGCCGACGG+AGG 0.618353 1_1:+12788101 Msa0008820:CDS
TGCATATCGATAGATGGCGT+CGG 0.621958 1_1:-12794428 None:intergenic
TGATGGAGTTGAAGGGAGGG+TGG 0.624136 1_1:-12787929 None:intergenic
ATTGCTGAAGGATTAGCCAT+AGG 0.624909 1_1:+12787829 Msa0008820:five_prime_UTR
AGATCCGGACGTCTGTCGAG+AGG 0.628487 1_1:+12792237 Msa0008820:CDS
GCAAAAGAGACACGGCGAGG+AGG 0.631006 1_1:-12788044 None:intergenic
TTGAGGGAGAGAGCACGTGA+TGG 0.631396 1_1:-12787961 None:intergenic
GGCGGCGTTGTTGAATGCGA+CGG 0.632867 1_1:-12787997 None:intergenic
CCAGAAGATCTTCAACAGAA+GGG 0.634354 1_1:-12792953 None:intergenic
CGTGACATGATGGAGTTGAA+GGG 0.634360 1_1:-12787936 None:intergenic
GCTTCGTCTAAATGTCCCAA+TGG 0.644543 1_1:+12789038 Msa0008820:CDS
TTGGGAACATGTAAAGGGAA+CGG 0.644997 1_1:+12793455 Msa0008820:CDS
AAATTGTAATGATCCCAACA+AGG 0.649143 1_1:-12794757 None:intergenic
GTATGGAGTGAATCAACAAG+TGG 0.650294 1_1:-12792816 None:intergenic
ACATGATGGAGTTGAAGGGA+GGG 0.652932 1_1:-12787932 None:intergenic
CAGCAATTGCAACCATTTCG+GGG 0.658853 1_1:+12788080 Msa0008820:CDS
AATTGTAATGATCCCAACAA+GGG 0.659740 1_1:-12794756 None:intergenic
ATCAGAGAAGACCAAAGCTG+TGG 0.670500 1_1:+12794366 Msa0008820:CDS
TGAAAAGCGCAAAAGAGACA+CGG 0.674363 1_1:-12788052 None:intergenic
GACATGATGGAGTTGAAGGG+AGG 0.677433 1_1:-12787933 None:intergenic
AGCGCAAAAGAGACACGGCG+AGG 0.682613 1_1:-12788047 None:intergenic
CGGAGAAGGTTAGAGAAACG+CGG 0.687115 1_1:-12787906 None:intergenic
AAAGTGCTGCTTGATCACTT+GGG 0.694800 1_1:+12793482 Msa0008820:CDS
TGGTACAGCTTGAACAACAG+TGG 0.699418 1_1:-12793411 None:intergenic
AGAGTTACAGAAAGGAACGA+CGG 0.736220 1_1:-12788018 None:intergenic
GTTACAGAAAGGAACGACGG+CGG 0.740877 1_1:-12788015 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAAATATAAATATAT+AGG + chr1_1:12791532-12791551 Msa0008820:intron 0.0%
!!! TATTTTATTCATTCTTTTTT+GGG + chr1_1:12788979-12788998 Msa0008820:intron 10.0%
!! TCAATTAAAAACAAAAAAAA+AGG - chr1_1:12790483-12790502 None:intergenic 10.0%
!! AAGAAAAATATAATAAAACA+AGG - chr1_1:12791230-12791249 None:intergenic 10.0%
!! TTTACAAATAAAGTAATTAA+AGG + chr1_1:12791640-12791659 Msa0008820:intron 10.0%
!! TATAAATTATACTATAATTG+AGG - chr1_1:12793022-12793041 None:intergenic 10.0%
!! AGAAAAAAAAAATAATTCTA+AGG - chr1_1:12793147-12793166 None:intergenic 10.0%
!! ATATGTTTCATATATTAAAA+GGG - chr1_1:12794670-12794689 None:intergenic 10.0%
!! AAGATACAATTATATTATGT+TGG + chr1_1:12788575-12788594 Msa0008820:intron 15.0%
!!! CTATTTTATTCATTCTTTTT+TGG + chr1_1:12788978-12788997 Msa0008820:intron 15.0%
!!! TTATTTTCATTAACAAAAGT+TGG + chr1_1:12789610-12789629 Msa0008820:intron 15.0%
!! GAAATTAAAAGTTAAAGTAA+CGG + chr1_1:12789712-12789731 Msa0008820:intron 15.0%
!! AAAACAAAAAAAAAGGATAA+TGG - chr1_1:12790476-12790495 None:intergenic 15.0%
!! AAAATAAATAGCTTAAAACA+TGG - chr1_1:12790659-12790678 None:intergenic 15.0%
!!! CAATTTTTCTAATATAAATG+TGG + chr1_1:12790719-12790738 Msa0008820:intron 15.0%
!! TTTCAGAATATATATACTTT+AGG - chr1_1:12792652-12792671 None:intergenic 15.0%
!! TTATTATGTTAACTCAAATA+TGG - chr1_1:12793625-12793644 None:intergenic 15.0%
!!! TAAAATTGATGTCATATTTT+AGG - chr1_1:12794033-12794052 None:intergenic 15.0%
!! TATGTTTCATATATTAAAAG+GGG - chr1_1:12794669-12794688 None:intergenic 15.0%
!! CATATGTTTCATATATTAAA+AGG - chr1_1:12794671-12794690 None:intergenic 15.0%
!! TTATTATCTATCATGTTAAA+CGG - chr1_1:12794736-12794755 None:intergenic 15.0%
!!! AGATCATTTATCATTTCTTT+TGG - chr1_1:12787726-12787745 None:intergenic 20.0%
!! AAAAGAAATGATAAATGATC+TGG + chr1_1:12787725-12787744 Msa0008820:five_prime_UTR 20.0%
!! TAGTAATCAAACGATTATTT+AGG + chr1_1:12788328-12788347 Msa0008820:intron 20.0%
!!! ATTAATTTGAAGCTTGAAAT+AGG + chr1_1:12788821-12788840 Msa0008820:intron 20.0%
!!! TTAATTTGAAGCTTGAAATA+GGG + chr1_1:12788822-12788841 Msa0008820:intron 20.0%
!! GTTTATACAAAAACTTAACA+AGG + chr1_1:12789179-12789198 Msa0008820:CDS 20.0%
!!! TTAATTTCTCTCTTTTGAAA+TGG - chr1_1:12789700-12789719 None:intergenic 20.0%
!! CTGAAAAAAAGATTAAAATG+AGG - chr1_1:12790027-12790046 None:intergenic 20.0%
!!! CTCATTTTAATCTTTTTTTC+AGG + chr1_1:12790025-12790044 Msa0008820:intron 20.0%
!! CATTTGCACAAAAAAAATAT+GGG + chr1_1:12790316-12790335 Msa0008820:intron 20.0%
!! ATTTGCACAAAAAAAATATG+GGG + chr1_1:12790317-12790336 Msa0008820:intron 20.0%
!! TTGAATCCTGTATTATATAA+AGG + chr1_1:12790499-12790518 Msa0008820:intron 20.0%
!! AATGTTCCTTTATATAATAC+AGG - chr1_1:12790508-12790527 None:intergenic 20.0%
!! TATAAATGTGGATATTCATA+TGG + chr1_1:12790731-12790750 Msa0008820:intron 20.0%
!! TAATTTGAACATTGTGAATT+AGG + chr1_1:12790775-12790794 Msa0008820:intron 20.0%
!!! TGTGATAGATATTTTTAAGA+AGG + chr1_1:12790808-12790827 Msa0008820:CDS 20.0%
!! TATTTAACTATTACAGTCTT+TGG - chr1_1:12791429-12791448 None:intergenic 20.0%
!!! TTAAGCATCATATATCTTTT+TGG + chr1_1:12791951-12791970 Msa0008820:intron 20.0%
!! TTGTTATGAAAAACTGAAAA+AGG - chr1_1:12792279-12792298 None:intergenic 20.0%
!!! TGTTTTTTGTTTTTCTCATT+GGG - chr1_1:12792527-12792546 None:intergenic 20.0%
!!! ATGTTTTTTGTTTTTCTCAT+TGG - chr1_1:12792528-12792547 None:intergenic 20.0%
!!! TTTTTGTTATGTAGAAAACT+GGG - chr1_1:12792598-12792617 None:intergenic 20.0%
!! TTAAGAGAAAAATACTTTAC+AGG + chr1_1:12792920-12792939 Msa0008820:intron 20.0%
!! AACTTGTATGTGATATTTAT+TGG - chr1_1:12793197-12793216 None:intergenic 20.0%
!!! GACATCAATTTTATTTTACA+AGG + chr1_1:12794040-12794059 Msa0008820:intron 20.0%
!! AATTTAGTCCTTGAAATATT+TGG - chr1_1:12794082-12794101 None:intergenic 20.0%
!! TGCATTGAATAAGATTATTT+AGG + chr1_1:12794195-12794214 Msa0008820:intron 20.0%
!! TATCTGCATATCATAAATTT+GGG - chr1_1:12794272-12794291 None:intergenic 20.0%
!! TTATCTGCATATCATAAATT+TGG - chr1_1:12794273-12794292 None:intergenic 20.0%
!! AATTTATGATATGCAGATAA+TGG + chr1_1:12794273-12794292 Msa0008820:intron 20.0%
!!! TGTCATTTATTTGTCATTAT+TGG + chr1_1:12794583-12794602 Msa0008820:three_prime_UTR 20.0%
!! AAACATATGATAGAAAATTC+AGG + chr1_1:12794682-12794701 Msa0008820:three_prime_UTR 20.0%
! GATAAATGATCTGGAAAAAT+TGG + chr1_1:12787734-12787753 Msa0008820:five_prime_UTR 25.0%
! TACAAAAACTTAACAAGGAA+TGG + chr1_1:12789184-12789203 Msa0008820:CDS 25.0%
! GAAAATGCAATTCTTACAAT+AGG - chr1_1:12789273-12789292 None:intergenic 25.0%
!! ACTTATGAATTATGATGATG+AGG - chr1_1:12789298-12789317 None:intergenic 25.0%
! ATACAAACTTGAAACTTAGA+TGG + chr1_1:12789318-12789337 Msa0008820:intron 25.0%
! ATATTATAAAACCAACCATG+AGG - chr1_1:12789475-12789494 None:intergenic 25.0%
!! TTTCATTTTCTTCTACTTGT+GGG + chr1_1:12789890-12789909 Msa0008820:intron 25.0%
! ATAAAACCAAAATACCATAC+TGG - chr1_1:12790269-12790288 None:intergenic 25.0%
!!! TATTTTTTTTGTGCAAATGG+AGG - chr1_1:12790315-12790334 None:intergenic 25.0%
!!! CCATATTTTTTTTGTGCAAA+TGG - chr1_1:12790318-12790337 None:intergenic 25.0%
! CCATTTGCACAAAAAAAATA+TGG + chr1_1:12790315-12790334 Msa0008820:intron 25.0%
! TTTGCACAAAAAAAATATGG+GGG + chr1_1:12790318-12790337 Msa0008820:intron 25.0%
! TTAAAAATATCTATCACAGC+TGG - chr1_1:12790806-12790825 None:intergenic 25.0%
!!! GATAGATATTTTTAAGAAGG+TGG + chr1_1:12790811-12790830 Msa0008820:CDS 25.0%
! ATCCAAACAAATATCCTTTA+TGG - chr1_1:12791145-12791164 None:intergenic 25.0%
! TAATTAAAGGCTATGAATGA+AGG + chr1_1:12791653-12791672 Msa0008820:intron 25.0%
! AGATATATGATGCTTAAAAG+CGG - chr1_1:12791948-12791967 None:intergenic 25.0%
!! TATCAGAAACTACATTTTGT+TGG - chr1_1:12792073-12792092 None:intergenic 25.0%
! TATGAAAAACTGAAAAAGGA+GGG - chr1_1:12792275-12792294 None:intergenic 25.0%
! TTATGAAAAACTGAAAAAGG+AGG - chr1_1:12792276-12792295 None:intergenic 25.0%
! ATAATGTTTCATAAGCAATG+GGG - chr1_1:12792402-12792421 None:intergenic 25.0%
! CATAATGTTTCATAAGCAAT+GGG - chr1_1:12792403-12792422 None:intergenic 25.0%
! TGTAGTCAATGAACATAATA+TGG - chr1_1:12792477-12792496 None:intergenic 25.0%
!!! CTTTTTGTTATGTAGAAAAC+TGG - chr1_1:12792599-12792618 None:intergenic 25.0%
! TAGAATGTAAGCAATCATAT+AGG - chr1_1:12792879-12792898 None:intergenic 25.0%
! ATCTTGCTAACAATTACATT+TGG + chr1_1:12793341-12793360 Msa0008820:CDS 25.0%
!! TTTTGTGATCATATTTCACA+CGG + chr1_1:12793715-12793734 Msa0008820:intron 25.0%
! AATATAAAGCAAACATCACA+AGG - chr1_1:12793969-12793988 None:intergenic 25.0%
! AACATGAACCAAATATTTCA+AGG + chr1_1:12794071-12794090 Msa0008820:intron 25.0%
! ATCTGCATATCATAAATTTG+GGG - chr1_1:12794271-12794290 None:intergenic 25.0%
!!! ATACCCCTGATTAATTTTTT+TGG + chr1_1:12794510-12794529 Msa0008820:three_prime_UTR 25.0%
! GAACCAAAAAAATTAATCAG+GGG - chr1_1:12794516-12794535 None:intergenic 25.0%
! GGAACCAAAAAAATTAATCA+GGG - chr1_1:12794517-12794536 None:intergenic 25.0%
! GTCAACAAGTTATATACATT+TGG - chr1_1:12794853-12794872 None:intergenic 25.0%
ATTATTGGAAATGGAAGCTA+TGG - chr1_1:12787855-12787874 None:intergenic 30.0%
AAGAAGGAGATTATTGGAAA+TGG - chr1_1:12787864-12787883 None:intergenic 30.0%
AAGAAGAAGAAGGAGATTAT+TGG - chr1_1:12787870-12787889 None:intergenic 30.0%
AACTTTCTTCGATGCAAATA+GGG - chr1_1:12788199-12788218 None:intergenic 30.0%
AAACTTTCTTCGATGCAAAT+AGG - chr1_1:12788200-12788219 None:intergenic 30.0%
AAGTAACTAACCAAGATTTC+AGG - chr1_1:12788233-12788252 None:intergenic 30.0%
ACTACTAGAACTAATAGAGT+GGG - chr1_1:12788312-12788331 None:intergenic 30.0%
TACTACTAGAACTAATAGAG+TGG - chr1_1:12788313-12788332 None:intergenic 30.0%
GATAGAAATAATCACTGAAG+AGG + chr1_1:12788378-12788397 Msa0008820:intron 30.0%
ACCATCAATTTAGTCTCTAA+AGG + chr1_1:12788492-12788511 Msa0008820:intron 30.0%
! TCCTTTAGAGACTAAATTGA+TGG - chr1_1:12788496-12788515 None:intergenic 30.0%
!!! TTTTTTGATAGTCTGTACTC+TGG + chr1_1:12788621-12788640 Msa0008820:intron 30.0%
AAATGTTGTCCAGTTTCAAT+TGG + chr1_1:12788767-12788786 Msa0008820:intron 30.0%
TCATGAAATCCAATTGAAAC+TGG - chr1_1:12788779-12788798 None:intergenic 30.0%
TTCAATTGGATTTCATGATC+AGG + chr1_1:12788781-12788800 Msa0008820:intron 30.0%
AAGTCATGTGAAATAGTTTG+TGG + chr1_1:12788870-12788889 Msa0008820:intron 30.0%
! AGTCATGTGAAATAGTTTGT+GGG + chr1_1:12788871-12788890 Msa0008820:intron 30.0%
! TATGAATTATGATGATGAGG+TGG - chr1_1:12789295-12789314 None:intergenic 30.0%
! CTTTATTTGCAGCTTATGTT+GGG + chr1_1:12789371-12789390 Msa0008820:intron 30.0%
TAAGTGCATTTGAAAGTTCT+TGG - chr1_1:12789740-12789759 None:intergenic 30.0%
TGCACTTACTTACTAAATGA+TGG + chr1_1:12789752-12789771 Msa0008820:intron 30.0%
CTCGAGTAGAAATAAATTGT+TGG + chr1_1:12789828-12789847 Msa0008820:intron 30.0%
! GTTTCATTTTCTTCTACTTG+TGG + chr1_1:12789889-12789908 Msa0008820:intron 30.0%
! TTCATTTTCTTCTACTTGTG+GGG + chr1_1:12789891-12789910 Msa0008820:intron 30.0%
!!! TAATCTTTTTTTCAGGTCCA+TGG + chr1_1:12790032-12790051 Msa0008820:intron 30.0%
TGATCATGAATTAAGTGAAG+AGG + chr1_1:12790076-12790095 Msa0008820:CDS 30.0%
! AATTACCATCTGAACTGTTT+TGG - chr1_1:12790211-12790230 None:intergenic 30.0%
ATAGATGAATTGTCAAAGAC+AGG + chr1_1:12790352-12790371 Msa0008820:intron 30.0%
TATATCTTCTGTGATATGGA+TGG + chr1_1:12790417-12790436 Msa0008820:CDS 30.0%
ATGGTATTCTGACAAATCAT+GGG - chr1_1:12790640-12790659 None:intergenic 30.0%
! ATTGTTTCAGAATTTTCTCC+TGG + chr1_1:12790854-12790873 Msa0008820:CDS 30.0%
! TTGTTTCAGAATTTTCTCCT+GGG + chr1_1:12790855-12790874 Msa0008820:CDS 30.0%
GAGATATTCGATGACAATTA+TGG + chr1_1:12791119-12791138 Msa0008820:intron 30.0%
AGAAACAGAATAGAGTAAGA+TGG + chr1_1:12791762-12791781 Msa0008820:intron 30.0%
!! AGGAAAAGTATTGGATTGTT+TGG + chr1_1:12791851-12791870 Msa0008820:intron 30.0%
!! GGAAAAGTATTGGATTGTTT+GGG + chr1_1:12791852-12791871 Msa0008820:intron 30.0%
TTGGAGATAACTTAATCTCT+TGG + chr1_1:12791970-12791989 Msa0008820:intron 30.0%
ATGATAGAAACTGTGATAGT+GGG - chr1_1:12792113-12792132 None:intergenic 30.0%
AATGATAGAAACTGTGATAG+TGG - chr1_1:12792114-12792133 None:intergenic 30.0%
AATAAAGTCCAAAACGACAA+AGG - chr1_1:12792336-12792355 None:intergenic 30.0%
CCATAATGTTTCATAAGCAA+TGG - chr1_1:12792404-12792423 None:intergenic 30.0%
CCATTGCTTATGAAACATTA+TGG + chr1_1:12792401-12792420 Msa0008820:intron 30.0%
GAACATAATATGGCTATTGA+GGG - chr1_1:12792467-12792486 None:intergenic 30.0%
TGAACATAATATGGCTATTG+AGG - chr1_1:12792468-12792487 None:intergenic 30.0%
! TGTTTTTCTCATTGGGTAAA+AGG - chr1_1:12792520-12792539 None:intergenic 30.0%
!!! TCTGAAATGTCATTTTTTGC+AGG + chr1_1:12792665-12792684 Msa0008820:intron 30.0%
AACAAGTGGATCATGAAAAA+GGG - chr1_1:12792805-12792824 None:intergenic 30.0%
TATTCACTGTTCTCTATTGA+AGG + chr1_1:12793057-12793076 Msa0008820:intron 30.0%
CAGTCAATACAAACTTGTAT+GGG - chr1_1:12793245-12793264 None:intergenic 30.0%
! TTTTATTGCAGTTGTCTTTG+AGG - chr1_1:12793276-12793295 None:intergenic 30.0%
GACAACAAAATAAATGTGTG+AGG - chr1_1:12793544-12793563 None:intergenic 30.0%
! TTGTCTTTTTCTCTCAAACT+CGG + chr1_1:12793559-12793578 Msa0008820:intron 30.0%
TTGGTATCATACATATAGAG+TGG + chr1_1:12793597-12793616 Msa0008820:intron 30.0%
ATGATCACAAAATCATGTCA+TGG - chr1_1:12793707-12793726 None:intergenic 30.0%
ATGTAGTATGATTGCTAATG+AGG + chr1_1:12793814-12793833 Msa0008820:intron 30.0%
TCACACGTACATAAACTAAA+AGG - chr1_1:12793873-12793892 None:intergenic 30.0%
!! GGTTTTAATCTCTGAAAAAC+AGG + chr1_1:12793906-12793925 Msa0008820:intron 30.0%
TCAAGGACTAAATTAGAACA+AGG + chr1_1:12794088-12794107 Msa0008820:intron 30.0%
AAATCCATCAATTGTGTTCA+TGG + chr1_1:12794144-12794163 Msa0008820:intron 30.0%
GGGAACCAAAAAAATTAATC+AGG - chr1_1:12794518-12794537 None:intergenic 30.0%
! TGCAATGTTTTCATGTCTAA+AGG + chr1_1:12794627-12794646 Msa0008820:three_prime_UTR 30.0%
TGATAGATAATAACCCTTGT+TGG + chr1_1:12794743-12794762 Msa0008820:three_prime_UTR 30.0%
GATAGATAATAACCCTTGTT+GGG + chr1_1:12794744-12794763 Msa0008820:three_prime_UTR 30.0%
AATTGTAATGATCCCAACAA+GGG - chr1_1:12794759-12794778 None:intergenic 30.0%
AAATTGTAATGATCCCAACA+AGG - chr1_1:12794760-12794779 None:intergenic 30.0%
! GTTGGGATCATTACAATTTT+TGG + chr1_1:12794761-12794780 Msa0008820:three_prime_UTR 30.0%
GAAGAAGAAGAAGAAGAAGA+AGG - chr1_1:12787880-12787899 None:intergenic 35.0%
AACCAAGATTTCAGGATCAT+CGG - chr1_1:12788225-12788244 None:intergenic 35.0%
TGATAGTTCCCATATGAAGA+GGG + chr1_1:12788424-12788443 Msa0008820:intron 35.0%
!!! CAAGAATTCCTGTTTTGATC+CGG + chr1_1:12788684-12788703 Msa0008820:intron 35.0%
CAAAACATGTAGCAAGTAAC+CGG - chr1_1:12788706-12788725 None:intergenic 35.0%
! AATAGTTTGTGGGAACTTCA+TGG + chr1_1:12788881-12788900 Msa0008820:intron 35.0%
GATACTGCTATAGATGATGT+TGG + chr1_1:12789111-12789130 Msa0008820:CDS 35.0%
CTCATCATTACAAAGAAGCA+CGG - chr1_1:12789160-12789179 None:intergenic 35.0%
AAAGGAATTCATCAAGCACT+TGG - chr1_1:12789355-12789374 None:intergenic 35.0%
CCAACATAAGCTGCAAATAA+AGG - chr1_1:12789373-12789392 None:intergenic 35.0%
! CCTTTATTTGCAGCTTATGT+TGG + chr1_1:12789370-12789389 Msa0008820:intron 35.0%
TAAAACCAACCATGAGGATA+CGG - chr1_1:12789469-12789488 None:intergenic 35.0%
TTGTGTTACACTTCTGCAAA+AGG + chr1_1:12789534-12789553 Msa0008820:intron 35.0%
GTTGAAGCTTGAGATACAAA+AGG + chr1_1:12789850-12789869 Msa0008820:intron 35.0%
!!! CATGGCTTGTTACATCTTTT+GGG + chr1_1:12790050-12790069 Msa0008820:CDS 35.0%
AGTAGAAATGGAGAAAGAAG+AGG + chr1_1:12790103-12790122 Msa0008820:CDS 35.0%
! TGTGAACCAGTATGGTATTT+TGG + chr1_1:12790260-12790279 Msa0008820:intron 35.0%
CAGAAGATATAGCTGAACTT+TGG - chr1_1:12790408-12790427 None:intergenic 35.0%
CAGCTATATCTTCTGTGATA+TGG + chr1_1:12790413-12790432 Msa0008820:CDS 35.0%
AATTTCTACTTCAACTGCCA+AGG + chr1_1:12790546-12790565 Msa0008820:CDS 35.0%
!! ACAACATCTTACTTTTCCAG+TGG - chr1_1:12790614-12790633 None:intergenic 35.0%
CATGGTATTCTGACAAATCA+TGG - chr1_1:12790641-12790660 None:intergenic 35.0%
! TTTAAGAAGGTGGATTTAGC+TGG + chr1_1:12790821-12790840 Msa0008820:CDS 35.0%
! TGTTTCAGAATTTTCTCCTG+GGG + chr1_1:12790856-12790875 Msa0008820:CDS 35.0%
ATTACCTGTAAAAAAACCCC+AGG - chr1_1:12790875-12790894 None:intergenic 35.0%
AAGTTGTCAACATTACTCAG+TGG + chr1_1:12791097-12791116 Msa0008820:intron 35.0%
GATGACAATTATGGCCATAA+AGG + chr1_1:12791128-12791147 Msa0008820:intron 35.0%
GGCCATAAAGGATATTTGTT+TGG + chr1_1:12791140-12791159 Msa0008820:intron 35.0%
AAGTTAGCAATTCCAGATAG+TGG + chr1_1:12791383-12791402 Msa0008820:intron 35.0%
AGTTAGCAATTCCAGATAGT+GGG + chr1_1:12791384-12791403 Msa0008820:intron 35.0%
TCATAGACACAATTCGAACT+CGG + chr1_1:12791560-12791579 Msa0008820:intron 35.0%
! ATACTTTTCCTGCCAAACAA+GGG - chr1_1:12791842-12791861 None:intergenic 35.0%
! AATACTTTTCCTGCCAAACA+AGG - chr1_1:12791843-12791862 None:intergenic 35.0%
! TTGTTTGGCAGGAAAAGTAT+TGG + chr1_1:12791842-12791861 Msa0008820:intron 35.0%
TGTAAGGAAGATAAGGCATA+GGG - chr1_1:12792153-12792172 None:intergenic 35.0%
TTGCTTGTTTATGGTAGACA+AGG + chr1_1:12792190-12792209 Msa0008820:CDS 35.0%
TTGTTTATGGTAGACAAGGT+CGG + chr1_1:12792194-12792213 Msa0008820:CDS 35.0%
!! CGTTTTGGACTTTATTGCAA+AGG + chr1_1:12792340-12792359 Msa0008820:intron 35.0%
! TTTATTGCAAAGGTTAGCTG+TGG + chr1_1:12792350-12792369 Msa0008820:intron 35.0%
TAAGCAATGGGGAAATAAAG+TGG - chr1_1:12792391-12792410 None:intergenic 35.0%
TTTGTGTTTCTTGTATGTGC+AGG + chr1_1:12792716-12792735 Msa0008820:intron 35.0%
! TCTTTACTCTTTGGAGAGTA+AGG + chr1_1:12792743-12792762 Msa0008820:CDS 35.0%
CCTTCACAAAATGCAATAAG+TGG - chr1_1:12792771-12792790 None:intergenic 35.0%
! CCACTTATTGCATTTTGTGA+AGG + chr1_1:12792768-12792787 Msa0008820:CDS 35.0%
CAACAAGTGGATCATGAAAA+AGG - chr1_1:12792806-12792825 None:intergenic 35.0%
! TTGGTTCGTGGTATATTGTA+TGG - chr1_1:12792836-12792855 None:intergenic 35.0%
TACAATATACCACGAACCAA+AGG + chr1_1:12792836-12792855 Msa0008820:CDS 35.0%
CATATAGGATCCCAATAATG+AGG - chr1_1:12792864-12792883 None:intergenic 35.0%
! TCTTTTTCCATACCAGGAAA+GGG + chr1_1:12793080-12793099 Msa0008820:CDS 35.0%
AGGTGAAATGTCAAACTACA+AGG - chr1_1:12793127-12793146 None:intergenic 35.0%
GCAGTCAATACAAACTTGTA+TGG - chr1_1:12793246-12793265 None:intergenic 35.0%
GTGAGGTGAATAGATATTTG+TGG - chr1_1:12793527-12793546 None:intergenic 35.0%
TCGGAAAGTGAAAGTAAGAT+TGG + chr1_1:12793578-12793597 Msa0008820:intron 35.0%
GGAAAACATGTTGAATCTGA+TGG - chr1_1:12793686-12793705 None:intergenic 35.0%
ATTAATCATCCATTGAGCTG+AGG + chr1_1:12793759-12793778 Msa0008820:intron 35.0%
TTAATCATCCATTGAGCTGA+GGG + chr1_1:12793760-12793779 Msa0008820:intron 35.0%
GCAATCATACTACATTTGCA+TGG - chr1_1:12793809-12793828 None:intergenic 35.0%
ACGTGTGACACACTATTTAT+TGG + chr1_1:12793885-12793904 Msa0008820:intron 35.0%
! GCTTTCTGTCATCATTGTTT+TGG + chr1_1:12793936-12793955 Msa0008820:intron 35.0%
TTGTCCATGAACACAATTGA+TGG - chr1_1:12794151-12794170 None:intergenic 35.0%
! GATATGCAGATAATGGCTAT+TGG + chr1_1:12794280-12794299 Msa0008820:intron 35.0%
TCAGAATGCATATCGATAGA+TGG - chr1_1:12794437-12794456 None:intergenic 35.0%
AACTTACACCTCTGTAGAAA+GGG - chr1_1:12794489-12794508 None:intergenic 35.0%
TTTCGCGAAGGAAAATGAAT+GGG - chr1_1:12794538-12794557 None:intergenic 35.0%
! TTTTCGCGAAGGAAAATGAA+TGG - chr1_1:12794539-12794558 None:intergenic 35.0%
! ATTCATTTTCCTTCGCGAAA+AGG + chr1_1:12794538-12794557 Msa0008820:three_prime_UTR 35.0%
TGGCTGTAACTCATTCATTA+AGG + chr1_1:12794603-12794622 Msa0008820:three_prime_UTR 35.0%
! TGTTTTCATGTCTAAAGGCA+TGG + chr1_1:12794632-12794651 Msa0008820:three_prime_UTR 35.0%
! GGCTGTTACTGTGAAATTTT+TGG + chr1_1:12794703-12794722 Msa0008820:three_prime_UTR 35.0%
!!! ACTTGACAGCTCTAGTTTTA+TGG - chr1_1:12794801-12794820 None:intergenic 35.0%
!! GCAATGTTGCTTTCGTTTCT+CGG - chr1_1:12787814-12787833 None:intergenic 40.0%
AACGAAAGCAACATTGCTGA+AGG + chr1_1:12787817-12787836 Msa0008820:five_prime_UTR 40.0%
!! ATTGCTGAAGGATTAGCCAT+AGG + chr1_1:12787829-12787848 Msa0008820:five_prime_UTR 40.0%
AGAGTTACAGAAAGGAACGA+CGG - chr1_1:12788021-12788040 None:intergenic 40.0%
! TGAAAAGCGCAAAAGAGACA+CGG - chr1_1:12788055-12788074 None:intergenic 40.0%
ACCAGCAATTGCAACCATTT+CGG + chr1_1:12788078-12788097 Msa0008820:CDS 40.0%
AACTCCTTCTTCTTCCTCTT+CGG - chr1_1:12788164-12788183 None:intergenic 40.0%
ACCAAGATTTCAGGATCATC+GGG - chr1_1:12788224-12788243 None:intergenic 40.0%
CTGATAGTTCCCATATGAAG+AGG + chr1_1:12788423-12788442 Msa0008820:intron 40.0%
CTGGACAAAATGTTCTCCTA+TGG + chr1_1:12788640-12788659 Msa0008820:intron 40.0%
TGTTCTCCTATGGTTTAGTG+AGG + chr1_1:12788650-12788669 Msa0008820:intron 40.0%
GTTCTCCTATGGTTTAGTGA+GGG + chr1_1:12788651-12788670 Msa0008820:intron 40.0%
TTCTCCTATGGTTTAGTGAG+GGG + chr1_1:12788652-12788671 Msa0008820:intron 40.0%
ATGCCAGTTTCATTGCCATT+GGG - chr1_1:12789056-12789075 None:intergenic 40.0%
AATGCCAGTTTCATTGCCAT+TGG - chr1_1:12789057-12789076 None:intergenic 40.0%
GCAATGAAACTGGCATTTGA+TGG + chr1_1:12789060-12789079 Msa0008820:CDS 40.0%
! CTGGCATTTGATGGTTTGAA+AGG + chr1_1:12789069-12789088 Msa0008820:CDS 40.0%
TCAATGTCACAACATGAACC+TGG + chr1_1:12789237-12789256 Msa0008820:CDS 40.0%
ACAATAGGAAGATTGAGTCC+AGG - chr1_1:12789258-12789277 None:intergenic 40.0%
TTCATCAAGCACTTGGCAAT+TGG - chr1_1:12789348-12789367 None:intergenic 40.0%
TTACACTTCTGCAAAAGGCA+TGG + chr1_1:12789539-12789558 Msa0008820:intron 40.0%
GAAGCTTGAGATACAAAAGG+TGG + chr1_1:12789853-12789872 Msa0008820:intron 40.0%
ACAAAAGGTGGAAAGCAAAC+TGG + chr1_1:12789865-12789884 Msa0008820:intron 40.0%
ACAACATGAGATGAGCATGT+TGG + chr1_1:12789935-12789954 Msa0008820:intron 40.0%
TGTACAGCATAACACTGTCT+TGG - chr1_1:12789972-12789991 None:intergenic 40.0%
CCAAAAGATGTAACAAGCCA+TGG - chr1_1:12790052-12790071 None:intergenic 40.0%
!!! CCATGGCTTGTTACATCTTT+TGG + chr1_1:12790049-12790068 Msa0008820:CDS 40.0%
TGAAGAGGCTGAAGTAGAAA+TGG + chr1_1:12790091-12790110 Msa0008820:CDS 40.0%
! GAACTCCTTTTGCAAAGTCT+TGG + chr1_1:12790125-12790144 Msa0008820:CDS 40.0%
! TCCTTTTGCAAAGTCTTGGT+TGG + chr1_1:12790129-12790148 Msa0008820:CDS 40.0%
TCCAACCAAGACTTTGCAAA+AGG - chr1_1:12790133-12790152 None:intergenic 40.0%
TTGCAAAGTCTTGGTTGGAA+AGG + chr1_1:12790134-12790153 Msa0008820:CDS 40.0%
AGTCTTGGTTGGAAAGGAAA+AGG + chr1_1:12790140-12790159 Msa0008820:CDS 40.0%
GTCTTGGTTGGAAAGGAAAA+GGG + chr1_1:12790141-12790160 Msa0008820:CDS 40.0%
!!! ACCATCTGAACTGTTTTGGT+GGG - chr1_1:12790207-12790226 None:intergenic 40.0%
!! TACCATCTGAACTGTTTTGG+TGG - chr1_1:12790208-12790227 None:intergenic 40.0%
TCAACATCTGTGAACCAGTA+TGG + chr1_1:12790252-12790271 Msa0008820:intron 40.0%
TGGAGGTTACTTGAATGTGA+GGG - chr1_1:12790298-12790317 None:intergenic 40.0%
ATGGAGGTTACTTGAATGTG+AGG - chr1_1:12790299-12790318 None:intergenic 40.0%
GTCAAAGACAGGAAGAAAGA+AGG + chr1_1:12790363-12790382 Msa0008820:intron 40.0%
GTGAAAATTGTGATAGCCAC+TGG + chr1_1:12790595-12790614 Msa0008820:CDS 40.0%
GTGGATTTAGCTGGAAAAGA+TGG + chr1_1:12790830-12790849 Msa0008820:CDS 40.0%
!!! TTCTCCTGGGGTTTTTTTAC+AGG + chr1_1:12790868-12790887 Msa0008820:CDS 40.0%
GCGTCATCAGAAACATGAAA+AGG - chr1_1:12790904-12790923 None:intergenic 40.0%
CATAGACACAATTCGAACTC+GGG + chr1_1:12791561-12791580 Msa0008820:intron 40.0%
AGAATAGAGTAAGATGGAGC+CGG + chr1_1:12791768-12791787 Msa0008820:intron 40.0%
GTGTAAGGAAGATAAGGCAT+AGG - chr1_1:12792154-12792173 None:intergenic 40.0%
CATGTGGTGTAAGGAAGATA+AGG - chr1_1:12792160-12792179 None:intergenic 40.0%
TTCCAGGGATTGCTTGTTTA+TGG + chr1_1:12792181-12792200 Msa0008820:intron 40.0%
TACCATAAACAAGCAATCCC+TGG - chr1_1:12792186-12792205 None:intergenic 40.0%
TGTTTATGGTAGACAAGGTC+GGG + chr1_1:12792195-12792214 Msa0008820:CDS 40.0%
GACAAGGTCGGGAAATATAT+AGG + chr1_1:12792206-12792225 Msa0008820:CDS 40.0%
ATATAGGAGCAGCTTAGATC+CGG + chr1_1:12792222-12792241 Msa0008820:CDS 40.0%
CCAAAACGACAAAGGAATAC+AGG - chr1_1:12792328-12792347 None:intergenic 40.0%
!! CCTGTATTCCTTTGTCGTTT+TGG + chr1_1:12792325-12792344 Msa0008820:intron 40.0%
TTATTATCGAGCTCACTTGC+TGG + chr1_1:12792548-12792567 Msa0008820:intron 40.0%
TATTATCGAGCTCACTTGCT+GGG + chr1_1:12792549-12792568 Msa0008820:intron 40.0%
CATGAAAAAGGGTTAAGCAG+CGG - chr1_1:12792794-12792813 None:intergenic 40.0%
GTATGGAGTGAATCAACAAG+TGG - chr1_1:12792819-12792838 None:intergenic 40.0%
!! AACCAAAGGTGCCTCATTAT+TGG + chr1_1:12792850-12792869 Msa0008820:intron 40.0%
!! ACCAAAGGTGCCTCATTATT+GGG + chr1_1:12792851-12792870 Msa0008820:intron 40.0%
CCAGAAGATCTTCAACAGAA+GGG - chr1_1:12792956-12792975 None:intergenic 40.0%
CTGACATACAGGTATTCACT+AGG + chr1_1:12792982-12793001 Msa0008820:intron 40.0%
! TGAAGGTCTTTTTCCATACC+AGG + chr1_1:12793074-12793093 Msa0008820:intron 40.0%
! GTCTTTTTCCATACCAGGAA+AGG + chr1_1:12793079-12793098 Msa0008820:CDS 40.0%
! CTTTTTCCATACCAGGAAAG+GGG + chr1_1:12793081-12793100 Msa0008820:CDS 40.0%
! TTTTTCCATACCAGGAAAGG+GGG + chr1_1:12793082-12793101 Msa0008820:CDS 40.0%
ATGCTGGAAATTGTACCCTT+GGG + chr1_1:12793437-12793456 Msa0008820:CDS 40.0%
TACCCTTGGGAACATGTAAA+GGG + chr1_1:12793450-12793469 Msa0008820:CDS 40.0%
TTCCCTTTACATGTTCCCAA+GGG - chr1_1:12793455-12793474 None:intergenic 40.0%
TTGGGAACATGTAAAGGGAA+CGG + chr1_1:12793455-12793474 Msa0008820:CDS 40.0%
!! AAAAGTGCTGCTTGATCACT+TGG + chr1_1:12793481-12793500 Msa0008820:CDS 40.0%
!! AAAGTGCTGCTTGATCACTT+GGG + chr1_1:12793482-12793501 Msa0008820:CDS 40.0%
TAATCATCCATTGAGCTGAG+GGG + chr1_1:12793761-12793780 Msa0008820:intron 40.0%
TAGGCCTTTAATATTGCAGC+AGG + chr1_1:12794214-12794233 Msa0008820:intron 40.0%
ACAGCCTGCTGCAATATTAA+AGG - chr1_1:12794221-12794240 None:intergenic 40.0%
! CAGATAATGGCTATTGGTGA+TGG + chr1_1:12794286-12794305 Msa0008820:intron 40.0%
! TTAGGCATTGCACTGAGTAA+TGG + chr1_1:12794343-12794362 Msa0008820:CDS 40.0%
GGTTTAAGCAACGATGAAGA+TGG + chr1_1:12794400-12794419 Msa0008820:CDS 40.0%
ATTGCATTCCCTTTCTACAG+AGG + chr1_1:12794478-12794497 Msa0008820:three_prime_UTR 40.0%
CAACTTACACCTCTGTAGAA+AGG - chr1_1:12794490-12794509 None:intergenic 40.0%
! TCATCTTTACCTTTTCGCGA+AGG - chr1_1:12794550-12794569 None:intergenic 40.0%
GAAATGGAAGCTATGGCCTA+TGG - chr1_1:12787848-12787867 None:intergenic 45.0%
! ACATGATGGAGTTGAAGGGA+GGG - chr1_1:12787935-12787954 None:intergenic 45.0%
! CGTGACATGATGGAGTTGAA+GGG - chr1_1:12787939-12787958 None:intergenic 45.0%
! ACGTGACATGATGGAGTTGA+AGG - chr1_1:12787940-12787959 None:intergenic 45.0%
CGGAATAGGAATGGGATTGA+GGG - chr1_1:12787980-12787999 None:intergenic 45.0%
ACGGAATAGGAATGGGATTG+AGG - chr1_1:12787981-12788000 None:intergenic 45.0%
GAATGCGACGGAATAGGAAT+GGG - chr1_1:12787988-12788007 None:intergenic 45.0%
TGAATGCGACGGAATAGGAA+TGG - chr1_1:12787989-12788008 None:intergenic 45.0%
GTTGTTGAATGCGACGGAAT+AGG - chr1_1:12787994-12788013 None:intergenic 45.0%
CCAGCAATTGCAACCATTTC+GGG + chr1_1:12788079-12788098 Msa0008820:CDS 45.0%
CAGCAATTGCAACCATTTCG+GGG + chr1_1:12788080-12788099 Msa0008820:CDS 45.0%
! GAGGAGGAAAGAGAGAGTAT+CGG + chr1_1:12788120-12788139 Msa0008820:CDS 45.0%
AACCTCCAGTTCGAAAGGAA+GGG - chr1_1:12788452-12788471 None:intergenic 45.0%
TAACCTCCAGTTCGAAAGGA+AGG - chr1_1:12788453-12788472 None:intergenic 45.0%
GTCTTAACCTCCAGTTCGAA+AGG - chr1_1:12788457-12788476 None:intergenic 45.0%
TCTCCTATGGTTTAGTGAGG+GGG + chr1_1:12788653-12788672 Msa0008820:intron 45.0%
GCAAGTAACCGGATCAAAAC+AGG - chr1_1:12788695-12788714 None:intergenic 45.0%
GCTTCGTCTAAATGTCCCAA+TGG + chr1_1:12789038-12789057 Msa0008820:CDS 45.0%
TGTCCCAATGGCAATGAAAC+TGG + chr1_1:12789050-12789069 Msa0008820:CDS 45.0%
CTGCTATAGATGATGTTGGC+AGG + chr1_1:12789115-12789134 Msa0008820:CDS 45.0%
CAAGACAAGCAGAGGAAAGA+GGG + chr1_1:12789423-12789442 Msa0008820:CDS 45.0%
TGATGAGATCCGTATCCTCA+TGG + chr1_1:12789457-12789476 Msa0008820:CDS 45.0%
TCCCACCAAAACAGTTCAGA+TGG + chr1_1:12790203-12790222 Msa0008820:CDS 45.0%
ATGACGCCTCTGATTCTACA+AGG + chr1_1:12790917-12790936 Msa0008820:intron 45.0%
!! AGCAATTCCAGATAGTGGGT+AGG + chr1_1:12791388-12791407 Msa0008820:intron 45.0%
!! GCAATTCCAGATAGTGGGTA+GGG + chr1_1:12791389-12791408 Msa0008820:intron 45.0%
GCTATGAATGAAGGATGCCA+CGG + chr1_1:12791662-12791681 Msa0008820:intron 45.0%
AACAGACACAGATTGAGCAG+AGG + chr1_1:12791726-12791745 Msa0008820:intron 45.0%
! ATTGAGCAGAGGCATGAGTT+GGG + chr1_1:12791737-12791756 Msa0008820:intron 45.0%
! CACAAAAGGCTTTCGAGTAG+AGG - chr1_1:12791808-12791827 None:intergenic 45.0%
! CTACTCGAAAGCCTTTTGTG+AGG + chr1_1:12791808-12791827 Msa0008820:intron 45.0%
TCCTTACACCACATGATTCC+AGG + chr1_1:12792165-12792184 Msa0008820:intron 45.0%
CCTTACACCACATGATTCCA+GGG + chr1_1:12792166-12792185 Msa0008820:intron 45.0%
AAGCAATCCCTGGAATCATG+TGG - chr1_1:12792176-12792195 None:intergenic 45.0%
! GTGTGTCAGGGATTTGGTTT+AGG - chr1_1:12792445-12792464 None:intergenic 45.0%
GCAGGCATGTCTTTACTCTT+TGG + chr1_1:12792734-12792753 Msa0008820:intron 45.0%
! TCCCAATAATGAGGCACCTT+TGG - chr1_1:12792855-12792874 None:intergenic 45.0%
CCCTTCTGTTGAAGATCTTC+TGG + chr1_1:12792953-12792972 Msa0008820:CDS 45.0%
GCCAGAAGATCTTCAACAGA+AGG - chr1_1:12792957-12792976 None:intergenic 45.0%
! TTGCAGTTGTCTTTGAGGAC+AGG - chr1_1:12793271-12793290 None:intergenic 45.0%
CTTAGACACTGCGCAACAAA+AGG + chr1_1:12793383-12793402 Msa0008820:CDS 45.0%
TGGTACAGCTTGAACAACAG+TGG - chr1_1:12793414-12793433 None:intergenic 45.0%
GGTACAATTTCCAGCATGTC+TGG - chr1_1:12793434-12793453 None:intergenic 45.0%
CATGCTGGAAATTGTACCCT+TGG + chr1_1:12793436-12793455 Msa0008820:CDS 45.0%
GTACCCTTGGGAACATGTAA+AGG + chr1_1:12793449-12793468 Msa0008820:CDS 45.0%
GTTCCCTTTACATGTTCCCA+AGG - chr1_1:12793456-12793475 None:intergenic 45.0%
CTTGGGAGTTACTGCTAATG+AGG + chr1_1:12793499-12793518 Msa0008820:CDS 45.0%
! TTTTTGTCCCCTCAGCTCAA+TGG - chr1_1:12793771-12793790 None:intergenic 45.0%
TGATGTAGAGATGCTTGAGC+TGG + chr1_1:12794315-12794334 Msa0008820:CDS 45.0%
! ATGCTTGAGCTGGCTTCTTT+AGG + chr1_1:12794325-12794344 Msa0008820:CDS 45.0%
ATCAGAGAAGACCAAAGCTG+TGG + chr1_1:12794366-12794385 Msa0008820:CDS 45.0%
AATTGCGTTTGCCACAGCTT+TGG - chr1_1:12794380-12794399 None:intergenic 45.0%
AAAGCTGTGGCAAACGCAAT+TGG + chr1_1:12794379-12794398 Msa0008820:CDS 45.0%
TGCATATCGATAGATGGCGT+CGG - chr1_1:12794431-12794450 None:intergenic 45.0%
TATGCATTCTGAGCAGCTGA+AGG + chr1_1:12794445-12794464 Msa0008820:exon 45.0%
!!! GACAGCTCTAGTTTTATGGC+TGG - chr1_1:12794797-12794816 None:intergenic 45.0%
!!! ATTTTTTTAGAAATAATATT+TGG + chr1_1:12791356-12791375 Msa0008820:intron 5.0%
CTTTCGTTTCTCGGCTTAGC+GGG - chr1_1:12787805-12787824 None:intergenic 50.0%
GCTTTCGTTTCTCGGCTTAG+CGG - chr1_1:12787806-12787825 None:intergenic 50.0%
CGGAGAAGGTTAGAGAAACG+CGG - chr1_1:12787909-12787928 None:intergenic 50.0%
! GACATGATGGAGTTGAAGGG+AGG - chr1_1:12787936-12787955 None:intergenic 50.0%
GTTACAGAAAGGAACGACGG+CGG - chr1_1:12788018-12788037 None:intergenic 50.0%
GGAGGACGAGAGTTACAGAA+AGG - chr1_1:12788029-12788048 None:intergenic 50.0%
CCCGAAATGGTTGCAATTGC+TGG - chr1_1:12788082-12788101 None:intergenic 50.0%
TCTTCTTCCTCTTCGGCGTT+CGG - chr1_1:12788157-12788176 None:intergenic 50.0%
AACGCCGAAGAGGAAGAAGA+AGG + chr1_1:12788157-12788176 Msa0008820:CDS 50.0%
GCCCGATGATCCTGAAATCT+TGG + chr1_1:12788220-12788239 Msa0008820:CDS 50.0%
GAAGGGGTCCCTCTTCATAT+GGG - chr1_1:12788435-12788454 None:intergenic 50.0%
ACCTCCAGTTCGAAAGGAAG+GGG - chr1_1:12788451-12788470 None:intergenic 50.0%
AGTCCCCCTCACTAAACCAT+AGG - chr1_1:12788659-12788678 None:intergenic 50.0%
ATGGTTTAGTGAGGGGGACT+CGG + chr1_1:12788659-12788678 Msa0008820:intron 50.0%
GCAAGACAAGCAGAGGAAAG+AGG + chr1_1:12789422-12789441 Msa0008820:CDS 50.0%
GAGATCCGTATCCTCATGGT+TGG + chr1_1:12789461-12789480 Msa0008820:intron 50.0%
!! AACTGCCAAGGCTTTGAGAG+AGG + chr1_1:12790558-12790577 Msa0008820:CDS 50.0%
TTTGAGAGAGGCCTCAGCAA+GGG + chr1_1:12790570-12790589 Msa0008820:CDS 50.0%
! AATTTTCACGCCCCTTGCTG+AGG - chr1_1:12790584-12790603 None:intergenic 50.0%
GAGCTGCCTTGTAGAATCAG+AGG - chr1_1:12790926-12790945 None:intergenic 50.0%
GCTGCAGAGAACATGTAGGA+TGG + chr1_1:12791684-12791703 Msa0008820:intron 50.0%
! GATTGAGCAGAGGCATGAGT+TGG + chr1_1:12791736-12791755 Msa0008820:intron 50.0%
ATAGAGTAAGATGGAGCCGG+AGG + chr1_1:12791771-12791790 Msa0008820:intron 50.0%
AGAGGAAAGAGATGTGCCTC+CGG - chr1_1:12791790-12791809 None:intergenic 50.0%
! TCGAAAGCCTTTTGTGAGGC+AGG + chr1_1:12791812-12791831 Msa0008820:intron 50.0%
! GGGAACAATGCTTTGAGCAG+TGG + chr1_1:12791872-12791891 Msa0008820:CDS 50.0%
CCCTGGAATCATGTGGTGTA+AGG - chr1_1:12792169-12792188 None:intergenic 50.0%
ATTACCTCTCGACAGACGTC+CGG - chr1_1:12792244-12792263 None:intergenic 50.0%
! TTGAGGGTGTGTCAGGGATT+TGG - chr1_1:12792451-12792470 None:intergenic 50.0%
! TGGCTATTGAGGGTGTGTCA+GGG - chr1_1:12792457-12792476 None:intergenic 50.0%
! ATGGCTATTGAGGGTGTGTC+AGG - chr1_1:12792458-12792477 None:intergenic 50.0%
! AGCTCACTTGCTGGGATCTA+TGG + chr1_1:12792557-12792576 Msa0008820:intron 50.0%
! AATGAGGCACCTTTGGTTCG+TGG - chr1_1:12792848-12792867 None:intergenic 50.0%
TCTGGCATCTGCTGACATAC+AGG + chr1_1:12792971-12792990 Msa0008820:CDS 50.0%
TCATTCCCCCTTTCCTGGTA+TGG - chr1_1:12793090-12793109 None:intergenic 50.0%
ACATGTCATTCCCCCTTTCC+TGG - chr1_1:12793095-12793114 None:intergenic 50.0%
TCAAGCTGTACCAGACATGC+TGG + chr1_1:12793421-12793440 Msa0008820:CDS 50.0%
TGATGGAGTTGAAGGGAGGG+TGG - chr1_1:12787932-12787951 None:intergenic 55.0%
CGTGATGGCACGTGACATGA+TGG - chr1_1:12787949-12787968 None:intergenic 55.0%
! TTGAGGGAGAGAGCACGTGA+TGG - chr1_1:12787964-12787983 None:intergenic 55.0%
GCTGCACGTATTCCCCGAAA+TGG - chr1_1:12788095-12788114 None:intergenic 55.0%
CTCTCTCTTTCCTCCTCCGT+CGG - chr1_1:12788117-12788136 None:intergenic 55.0%
GGAAGGGGTCCCTCTTCATA+TGG - chr1_1:12788436-12788455 None:intergenic 55.0%
ACCCCTTCCTTTCGAACTGG+AGG + chr1_1:12788447-12788466 Msa0008820:intron 55.0%
TGGTTTAGTGAGGGGGACTC+GGG + chr1_1:12788660-12788679 Msa0008820:intron 55.0%
GACAGCAGCAAGACAAGCAG+AGG + chr1_1:12789415-12789434 Msa0008820:CDS 55.0%
TGAGGCCTCTCTCAAAGCCT+TGG - chr1_1:12790566-12790585 None:intergenic 55.0%
! CTTTGAGAGAGGCCTCAGCA+AGG + chr1_1:12790569-12790588 Msa0008820:CDS 55.0%
TTGAGAGAGGCCTCAGCAAG+GGG + chr1_1:12790571-12790590 Msa0008820:CDS 55.0%
CCATCTCCCTACCCACTATC+TGG - chr1_1:12791398-12791417 None:intergenic 55.0%
!! CCAGATAGTGGGTAGGGAGA+TGG + chr1_1:12791395-12791414 Msa0008820:intron 55.0%
CTACATGTTCTCTGCAGCCG+TGG - chr1_1:12791682-12791701 None:intergenic 55.0%
CACGGCTGCAGAGAACATGT+AGG + chr1_1:12791680-12791699 Msa0008820:intron 55.0%
CGGCTTAGCGGGAGATGCAA+TGG - chr1_1:12787794-12787813 None:intergenic 60.0%
TGGAGTTGAAGGGAGGGTGG+CGG - chr1_1:12787929-12787948 None:intergenic 60.0%
GGCGGCGTTGTTGAATGCGA+CGG - chr1_1:12788000-12788019 None:intergenic 60.0%
GCAAAAGAGACACGGCGAGG+AGG - chr1_1:12788047-12788066 None:intergenic 60.0%
AGCGCAAAAGAGACACGGCG+AGG - chr1_1:12788050-12788069 None:intergenic 60.0%
TCAGAAGCCGAACGCCGAAG+AGG + chr1_1:12788147-12788166 Msa0008820:CDS 60.0%
GGGACCCCTTCCTTTCGAAC+TGG + chr1_1:12788444-12788463 Msa0008820:intron 60.0%
GGGCACACCTGCCTCACAAA+AGG - chr1_1:12791822-12791841 None:intergenic 60.0%
GAGGCAGGTGTGCCCTTGTT+TGG + chr1_1:12791827-12791846 Msa0008820:intron 60.0%
! CAGGTGTGCCCTTGTTTGGC+AGG + chr1_1:12791831-12791850 Msa0008820:intron 60.0%
AGATCCGGACGTCTGTCGAG+AGG + chr1_1:12792237-12792256 Msa0008820:CDS 60.0%
!! TGAAGGGAGGGTGGCGGAGA+AGG - chr1_1:12787923-12787942 None:intergenic 65.0%
CGGGGAATACGTGCAGCCGA+CGG + chr1_1:12788098-12788117 Msa0008820:CDS 65.0%
GGAATACGTGCAGCCGACGG+AGG + chr1_1:12788101-12788120 Msa0008820:CDS 65.0%
ATACGTGCAGCCGACGGAGG+AGG + chr1_1:12788104-12788123 Msa0008820:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 12787716 12794873 12787716 ID=Msa0008820;Name=Msa0008820
chr1_1 mRNA 12787716 12794873 12787716 ID=Msa0008820-mRNA-1;Parent=Msa0008820;Name=Msa0008820-mRNA-1;_AED=0.08;_eAED=0.08;_QI=184|0.69|0.78|0.85|1|1|14|417|603
chr1_1 exon 12787716 12788241 12787716 ID=Msa0008820-mRNA-1:exon:4832;Parent=Msa0008820-mRNA-1
chr1_1 exon 12789024 12789275 12789024 ID=Msa0008820-mRNA-1:exon:4833;Parent=Msa0008820-mRNA-1
chr1_1 exon 12789383 12789478 12789383 ID=Msa0008820-mRNA-1:exon:4834;Parent=Msa0008820-mRNA-1
chr1_1 exon 12790047 12790224 12790047 ID=Msa0008820-mRNA-1:exon:4835;Parent=Msa0008820-mRNA-1
chr1_1 exon 12790370 12790438 12790370 ID=Msa0008820-mRNA-1:exon:4836;Parent=Msa0008820-mRNA-1
chr1_1 exon 12790521 12790621 12790521 ID=Msa0008820-mRNA-1:exon:4837;Parent=Msa0008820-mRNA-1
chr1_1 exon 12790797 12790889 12790797 ID=Msa0008820-mRNA-1:exon:4838;Parent=Msa0008820-mRNA-1
chr1_1 exon 12791853 12791906 12791853 ID=Msa0008820-mRNA-1:exon:4839;Parent=Msa0008820-mRNA-1
chr1_1 exon 12792187 12792258 12792187 ID=Msa0008820-mRNA-1:exon:4840;Parent=Msa0008820-mRNA-1
chr1_1 exon 12792738 12792857 12792738 ID=Msa0008820-mRNA-1:exon:4841;Parent=Msa0008820-mRNA-1
chr1_1 exon 12792942 12792992 12792942 ID=Msa0008820-mRNA-1:exon:4842;Parent=Msa0008820-mRNA-1
chr1_1 exon 12793079 12793112 12793079 ID=Msa0008820-mRNA-1:exon:4843;Parent=Msa0008820-mRNA-1
chr1_1 exon 12793339 12793520 12793339 ID=Msa0008820-mRNA-1:exon:4844;Parent=Msa0008820-mRNA-1
chr1_1 exon 12794289 12794873 12794289 ID=Msa0008820-mRNA-1:exon:4845;Parent=Msa0008820-mRNA-1
chr1_1 five_prime_UTR 12787716 12787899 12787716 ID=Msa0008820-mRNA-1:five_prime_utr;Parent=Msa0008820-mRNA-1
chr1_1 CDS 12787900 12788241 12787900 ID=Msa0008820-mRNA-1:cds;Parent=Msa0008820-mRNA-1
chr1_1 CDS 12789024 12789275 12789024 ID=Msa0008820-mRNA-1:cds;Parent=Msa0008820-mRNA-1
chr1_1 CDS 12789383 12789478 12789383 ID=Msa0008820-mRNA-1:cds;Parent=Msa0008820-mRNA-1
chr1_1 CDS 12790047 12790224 12790047 ID=Msa0008820-mRNA-1:cds;Parent=Msa0008820-mRNA-1
chr1_1 CDS 12790370 12790438 12790370 ID=Msa0008820-mRNA-1:cds;Parent=Msa0008820-mRNA-1
chr1_1 CDS 12790521 12790621 12790521 ID=Msa0008820-mRNA-1:cds;Parent=Msa0008820-mRNA-1
chr1_1 CDS 12790797 12790889 12790797 ID=Msa0008820-mRNA-1:cds;Parent=Msa0008820-mRNA-1
chr1_1 CDS 12791853 12791906 12791853 ID=Msa0008820-mRNA-1:cds;Parent=Msa0008820-mRNA-1
chr1_1 CDS 12792187 12792258 12792187 ID=Msa0008820-mRNA-1:cds;Parent=Msa0008820-mRNA-1
chr1_1 CDS 12792738 12792857 12792738 ID=Msa0008820-mRNA-1:cds;Parent=Msa0008820-mRNA-1
chr1_1 CDS 12792942 12792992 12792942 ID=Msa0008820-mRNA-1:cds;Parent=Msa0008820-mRNA-1
chr1_1 CDS 12793079 12793112 12793079 ID=Msa0008820-mRNA-1:cds;Parent=Msa0008820-mRNA-1
chr1_1 CDS 12793339 12793520 12793339 ID=Msa0008820-mRNA-1:cds;Parent=Msa0008820-mRNA-1
chr1_1 CDS 12794289 12794456 12794289 ID=Msa0008820-mRNA-1:cds;Parent=Msa0008820-mRNA-1
chr1_1 three_prime_UTR 12794457 12794873 12794457 ID=Msa0008820-mRNA-1:three_prime_utr;Parent=Msa0008820-mRNA-1
Gene Sequence

>Msa0008820

ATGCTTCCGCGTTTCTCTAACCTTCTCCGCCACCCTCCCTTCAACTCCATCATGTCACGTGCCATCACGTGCTCTCTCCCTCAATCCCATTCCTATTCCGTCGCATTCAACAACGCCGCCGTCGTTCCTTTCTGTAACTCTCGTCCTCCTCGCCGTGTCTCTTTTGCGCTTTTCAATAACCAGCAATTGCAACCATTTCGGGGAATACGTGCAGCCGACGGAGGAGGAAAGAGAGAGTATCGGAAAGTCAGAAGCCGAACGCCGAAGAGGAAGAAGAAGGAGTTAGAACTCTCTGTCCCTATTTGCATCGAAGAAAGTTTGCCCGATGATCCTGAAATCTTGAATATTGCAGAGATGCTTCGTCTAAATGTCCCAATGGCAATGAAACTGGCATTTGATGGTTTGAAAGGTTCAGAGTATAAAACAAGAGATACTGCTATAGATGATGTTGGCAGGTTTGAAAGTGTTGAGTTATCCGTGCTTCTTTGTAATGATGAGTTTATACAAAAACTTAACAAGGAATGGAGAGATGAAGATCACGCTACTGATGTTCTCTCAATGTCACAACATGAACCTGGACTCAATCTTCCTATTCTTATGTTGGGTGATATTGTAATTTCTCTTGAGACAGCAGCAAGACAAGCAGAGGAAAGAGGGCACGCACTTCTTGATGAGATCCGTATCCTCATGGTCCATGGCTTGTTACATCTTTTGGGATTTGATCATGAATTAAGTGAAGAGGCTGAAGTAGAAATGGAGAAAGAAGAGGAACTCCTTTTGCAAAGTCTTGGTTGGAAAGGAAAAGGGCTAATAAAGAGTGCATATGATGCTGAAGAAAATGCAAGTTCCCACCAAAACAGTTCAGATGACAGGAAGAAAGAAGGCAGTCTTCGATTTTACAAACCAAAGTTCAGCTATATCTTCTGTGATATGGATGGAACATTGCTGAACAGCAAAAGTCAAATTTCTACTTCAACTGCCAAGGCTTTGAGAGAGGCCTCAGCAAGGGGCGTGAAAATTGTGATAGCCACTGGAAAAGCTCGTCCAGCTGTGATAGATATTTTTAAGAAGGTGGATTTAGCTGGAAAAGATGGCATTGTTTCAGAATTTTCTCCTGGGGTTTTTTTACAGGAAAAGTATTGGATTGTTTGGGAACAATGCTTTGAGCAGTGGCATATTGATATCGGATTGCTTGTTTATGGTAGACAAGGTCGGGAAATATATAGGAGCAGCTTAGATCCGGACGTCTGTCGAGAGGCATGTCTTTACTCTTTGGAGAGTAAGGTTCCACTTATTGCATTTTGTGAAGGCCGCTGCTTAACCCTTTTTCATGATCCACTTGTTGATTCACTCCATACAATATACCACGAACCAAAGGCTGAGATCATCCCTTCTGTTGAAGATCTTCTGGCATCTGCTGACATACAGGTCTTTTTCCATACCAGGAAAGGGGGAATGACATATATCTTGCTAACAATTACATTTGGTTCTACAGAAAATGATTTTCTTAGACACTGCGCAACAAAAGGTCGTGCCACTGTTGTTCAAGCTGTACCAGACATGCTGGAAATTGTACCCTTGGGAACATGTAAAGGGAACGGAGTAAAAGTGCTGCTTGATCACTTGGGAGTTACTGCTAATGAGATAATGGCTATTGGTGATGGCGAAAATGATGTAGAGATGCTTGAGCTGGCTTCTTTAGGCATTGCACTGAGTAATGGATCAGAGAAGACCAAAGCTGTGGCAAACGCAATTGGTTTAAGCAACGATGAAGATGGTGCAGCCGACGCCATCTATCGATATGCATTCTGA
Protein sequence

>Msa0008820

MLPRFSNLLRHPPFNSIMSRAITCSLPQSHSYSVAFNNAAVVPFCNSRPPRRVSFALFNNQQLQPFRGIRAADGGGKREYRKVRSRTPKRKKKELELSVPICIEESLPDDPEILNIAEMLRLNVPMAMKLAFDGLKGSEYKTRDTAIDDVGRFESVELSVLLCNDEFIQKLNKEWRDEDHATDVLSMSQHEPGLNLPILMLGDIVISLETAARQAEERGHALLDEIRILMVHGLLHLLGFDHELSEEAEVEMEKEEELLLQSLGWKGKGLIKSAYDAEENASSHQNSSDDRKKEGSLRFYKPKFSYIFCDMDGTLLNSKSQISTSTAKALREASARGVKIVIATGKARPAVIDIFKKVDLAGKDGIVSEFSPGVFLQEKYWIVWEQCFEQWHIDIGLLVYGRQGREIYRSSLDPDVCREACLYSLESKVPLIAFCEGRCLTLFHDPLVDSLHTIYHEPKAEIIPSVEDLLASADIQVFFHTRKGGMTYILLTITFGSTENDFLRHCATKGRATVVQAVPDMLEIVPLGTCKGNGVKVLLDHLGVTANEIMAIGDGENDVEMLELASLGIALSNGSEKTKAVANAIGLSNDEDGAADAIYRYAF*