AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0032990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032990 MtrunA17_Chr1g0191841 85.460 337 14 6 1 312 1 327 0.0 538
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032990 AT5G27560.3 58.824 323 95 5 27 312 20 341 3.80e-123 357
Msa0032990 AT5G27560.4 58.824 323 95 5 27 312 20 341 3.80e-123 357
Msa0032990 AT5G27560.1 58.824 323 95 5 27 312 20 341 3.80e-123 357
Msa0032990 AT5G27560.2 58.176 318 95 5 27 307 20 336 6.76e-119 345

Find 97 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCAAGCAAATATCTATT+TGG 0.206377 1_1:-60136071 None:intergenic
CTCAAACTTGGCGCCAAGTT+TGG 0.262372 1_1:-60133408 None:intergenic
TATGTTGCGCAGATGTTATT+TGG 0.303732 1_1:+60136287 Msa0032990:intron
GAAAATTGAGGATGGGAAAA+TGG 0.319876 1_1:-60133341 None:intergenic
AAATGGAGTGGGTGAGGGTG+AGG 0.321967 1_1:-60133324 None:intergenic
ATGTGATGATTCTTGATTGA+TGG 0.353162 1_1:+60136401 Msa0032990:exon
ACCTCAATATCTTCAGTATC+AGG 0.376552 1_1:-60136110 None:intergenic
GAGGAGGATGAAGGAGGTTC+AGG 0.377619 1_1:-60133446 None:intergenic
ATTACTGCACCTTCCAAGTC+TGG 0.380610 1_1:-60133600 None:intergenic
ACCGCATCATTTGTATCTTC+AGG 0.381954 1_1:+60133639 Msa0032990:CDS
AGAGCTGCAGCACCGGCATC+TGG 0.389473 1_1:-60134388 None:intergenic
TCCACCTCCACCTCCAAACT+TGG 0.392380 1_1:+60133395 Msa0032990:CDS
ATCCACGGCCCTTCTTCGTC+GGG 0.393040 1_1:+60133219 Msa0032990:five_prime_UTR
ACCTTGGAATTTCTCAAACT+TGG 0.396675 1_1:-60133420 None:intergenic
CCCCGACATCTTTGCTATAC+AGG 0.398941 1_1:-60135188 None:intergenic
AACAGACTTTGTCCTTGCTC+TGG 0.399492 1_1:-60136329 None:intergenic
GATATAATGTACGGCAGTTA+AGG 0.401996 1_1:+60135214 Msa0032990:CDS
AGAGTGTTGTTGAGTGGAAC+TGG 0.406901 1_1:-60133298 None:intergenic
CTGCAGCTCTTCTAAAATAT+CGG 0.417986 1_1:+60134401 Msa0032990:CDS
AAGGCGCACAGTTGGAGCTC+TGG 0.422719 1_1:+60133802 Msa0032990:CDS
ATTCTTCCATTGGAAAATTG+AGG 0.430950 1_1:-60133353 None:intergenic
GCGTGGATTCCACATGATAA+GGG 0.432418 1_1:-60135166 None:intergenic
GGCGTGGATTCCACATGATA+AGG 0.432489 1_1:-60135167 None:intergenic
GCCTGTATAGCAAAGATGTC+GGG 0.439653 1_1:+60135187 Msa0032990:CDS
ATGGGAAAATGGAGTGGGTG+AGG 0.443249 1_1:-60133330 None:intergenic
TATCCACGGCCCTTCTTCGT+CGG 0.446482 1_1:+60133218 Msa0032990:five_prime_UTR
TATTCTAACATCTGATGATC+AGG 0.447172 1_1:-60134732 None:intergenic
TTCCACATGATAAGGGGCCT+TGG 0.447832 1_1:-60135159 None:intergenic
TGCAGTAATACAATCAAGTC+AGG 0.453229 1_1:+60133614 Msa0032990:CDS
GATATGTTCCGCTATATAGA+AGG 0.454960 1_1:+60136537 Msa0032990:three_prime_UTR
CAGTTGTTTACCTCCAGACT+TGG 0.469645 1_1:+60133587 Msa0032990:intron
GCCAAGTTTGGAGGTGGAGG+TGG 0.474503 1_1:-60133396 None:intergenic
GGCGCCAAGTTTGGAGGTGG+AGG 0.475987 1_1:-60133399 None:intergenic
GTTTCTAGTGAGGAGGATGA+AGG 0.480101 1_1:-60133455 None:intergenic
TAGCATACTTTAGAAATGAA+AGG 0.481792 1_1:+60136586 Msa0032990:three_prime_UTR
GCGAAGGGAAATTCTTCCAT+TGG 0.484219 1_1:-60133363 None:intergenic
TATTCAAGAAACTAAATGTC+AGG 0.484409 1_1:+60133854 Msa0032990:CDS
TAATACATGCATCATAGTAT+AGG 0.485316 1_1:-60136507 None:intergenic
AAGTTTGGAGGTGGAGGTGG+AGG 0.487859 1_1:-60133393 None:intergenic
TCCATTGGAAAATTGAGGAT+GGG 0.490691 1_1:-60133348 None:intergenic
AAACTTGGCGCCAAGTTTGG+AGG 0.491870 1_1:-60133405 None:intergenic
GTAAAGAGAAAATGAGTTGT+CGG 0.494768 1_1:+60133255 Msa0032990:exon
AGGTGGAGGTTGAAGAGCGA+AGG 0.495518 1_1:-60133379 None:intergenic
TTCCATTGGAAAATTGAGGA+TGG 0.502142 1_1:-60133349 None:intergenic
CCACGGCCCTTCTTCGTCGG+GGG 0.512881 1_1:+60133221 Msa0032990:five_prime_UTR
ATCTTCAGTATCAGGACGGT+TGG 0.519070 1_1:-60136102 None:intergenic
TGGGAAAATGGAGTGGGTGA+GGG 0.519803 1_1:-60133329 None:intergenic
AATGGAGTGGGTGAGGGTGA+GGG 0.524164 1_1:-60133323 None:intergenic
AGTATAGGATACAAGCTGTA+AGG 0.524513 1_1:-60136492 None:intergenic
AGACGATGAAGGCGCACAGT+TGG 0.532946 1_1:+60133794 Msa0032990:CDS
CTTGGCGCCAAGTTTGGAGG+TGG 0.536310 1_1:-60133402 None:intergenic
AGGCGCACAGTTGGAGCTCT+GGG 0.537017 1_1:+60133803 Msa0032990:CDS
CGCCTGTATAGCAAAGATGT+CGG 0.538948 1_1:+60135186 Msa0032990:CDS
TCCTGATACTGAAGATATTG+AGG 0.543903 1_1:+60136109 Msa0032990:CDS
AGCACCGGCATCTGGAAATA+CGG 0.545922 1_1:-60134380 None:intergenic
GGTGGAGGTTGAAGAGCGAA+GGG 0.546997 1_1:-60133378 None:intergenic
TGGAGCTCTGGGAATTGTCA+AGG 0.547143 1_1:+60133814 Msa0032990:CDS
CTCGAATTCTTAGACGATGA+AGG 0.553819 1_1:+60133783 Msa0032990:CDS
GATCGAAAGCTTGTAGATAG+TGG 0.557895 1_1:+60134684 Msa0032990:CDS
TATAGCAAAGATGTCGGGGT+TGG 0.560922 1_1:+60135192 Msa0032990:CDS
ATCACATAGACTTCATGAAA+CGG 0.569010 1_1:-60136385 None:intergenic
AAGATAAAGACGAAACCGAC+AGG 0.570019 1_1:+60133489 Msa0032990:CDS
TGTTCAGTGATGACAAGGAT+AGG 0.572733 1_1:+60136048 Msa0032990:CDS
TAATGAATAATTATTATCCA+CGG 0.577351 1_1:+60133204 None:intergenic
CACGGCCCTTCTTCGTCGGG+GGG 0.578613 1_1:+60133222 Msa0032990:five_prime_UTR
TCCACGGCCCTTCTTCGTCG+GGG 0.580662 1_1:+60133220 Msa0032990:five_prime_UTR
GCCAAGTTTGAGAAATTCCA+AGG 0.586495 1_1:+60133419 Msa0032990:CDS
AAGGAGGTTCAGGTTCACCT+TGG 0.587647 1_1:-60133436 None:intergenic
TGTTTACCTCCAGACTTGGA+AGG 0.589318 1_1:+60133591 Msa0032990:CDS
TGTAGATAGTGGTGATGAGA+TGG 0.592499 1_1:+60134695 Msa0032990:CDS
TCGGGGTTGGATATAATGTA+CGG 0.596860 1_1:+60135205 Msa0032990:CDS
AGTCTGTTTGACAAAGCGGC+AGG 0.600065 1_1:+60136344 Msa0032990:CDS
GCATCATTTGTATCTTCAGG+AGG 0.601953 1_1:+60133642 Msa0032990:CDS
TGTAATGATAGTTTCTAGTG+AGG 0.608646 1_1:-60133465 None:intergenic
TTGAGGATGGGAAAATGGAG+TGG 0.610141 1_1:-60133336 None:intergenic
CAGCTCTTCTAAAATATCGG+TGG 0.611070 1_1:+60134404 Msa0032990:CDS
CGTGGATTCCACATGATAAG+GGG 0.614438 1_1:-60135165 None:intergenic
AAAGCCGTATTTCCAGATGC+CGG 0.614566 1_1:+60134376 Msa0032990:CDS
TGAGGATGGGAAAATGGAGT+GGG 0.615442 1_1:-60133335 None:intergenic
AGGGTGAGAGTGTTGTTGAG+TGG 0.618557 1_1:-60133304 None:intergenic
TCTAGTGAGGAGGATGAAGG+AGG 0.622040 1_1:-60133452 None:intergenic
TCGTCTAAGAATTCGAGTTG+AGG 0.622785 1_1:-60133777 None:intergenic
ACTTGTGTCCTTCTATATAG+CGG 0.623101 1_1:-60136545 None:intergenic
ACATCTTTGCTATACAGGCG+TGG 0.625104 1_1:-60135183 None:intergenic
AATGATAGTTTCTAGTGAGG+AGG 0.628674 1_1:-60133462 None:intergenic
AGATAGTGGTGATGAGATGG+TGG 0.638397 1_1:+60134698 Msa0032990:CDS
TCCTGAAGATACAAATGATG+CGG 0.639331 1_1:-60133640 None:intergenic
ACAAAGTCTGTTTGACAAAG+CGG 0.639727 1_1:+60136340 Msa0032990:CDS
CATCATTTGTATCTTCAGGA+GGG 0.641311 1_1:+60133643 Msa0032990:CDS
GAAGAACAGAAACCAGAGCA+AGG 0.653627 1_1:+60136317 Msa0032990:CDS
CCTGTATAGCAAAGATGTCG+GGG 0.661498 1_1:+60135188 Msa0032990:CDS
CAATATCTTCAGTATCAGGA+CGG 0.662055 1_1:-60136106 None:intergenic
AGCCAAGGCCCCTTATCATG+TGG 0.662906 1_1:+60135157 Msa0032990:intron
AAATGAAAGGAAACGTTCCG+TGG 0.678264 1_1:+60136599 Msa0032990:three_prime_UTR
GAAAGTGTTCAGTGATGACA+AGG 0.693169 1_1:+60136043 Msa0032990:CDS
ACTGCACCTTCCAAGTCTGG+AGG 0.699886 1_1:-60133597 None:intergenic
AAGGGTGAGATTTCATACCA+CGG 0.736827 1_1:-60136616 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAATATAAATGACA+AGG + chr1_1:60134986-60135005 Msa0032990:intron 10.0%
!! AAAAAAAATATAAATGACAA+GGG + chr1_1:60134987-60135006 Msa0032990:intron 10.0%
!! TAAATGATTAAGGTTATTAT+AGG - chr1_1:60134112-60134131 None:intergenic 15.0%
!!! AATGAAGTATTAAATGATTA+AGG - chr1_1:60134122-60134141 None:intergenic 15.0%
!!! TTTGTTATTTCTTTTCTTTT+CGG + chr1_1:60135418-60135437 Msa0032990:intron 15.0%
!!! TACATCTTATTTTGAATAAT+TGG + chr1_1:60135573-60135592 Msa0032990:intron 15.0%
!! ATGTATATAATAATCCTTAT+GGG - chr1_1:60135731-60135750 None:intergenic 15.0%
!! TTAAAAAAAAGGAAGAATAA+TGG - chr1_1:60136216-60136235 None:intergenic 15.0%
!!! TGATGTTTCTATTAAAAAAA+AGG - chr1_1:60136227-60136246 None:intergenic 15.0%
!! AGTGAAAGAAAAAGATATAT+TGG - chr1_1:60133698-60133717 None:intergenic 20.0%
!!! CCATTTTTAATATAAGATCA+GGG - chr1_1:60133917-60133936 None:intergenic 20.0%
!!! TCCATTTTTAATATAAGATC+AGG - chr1_1:60133918-60133937 None:intergenic 20.0%
!! TCAAAATGTGACAATTAAAA+AGG - chr1_1:60134026-60134045 None:intergenic 20.0%
!!! AATAAAAGTATTTGTTGTCT+TGG - chr1_1:60134062-60134081 None:intergenic 20.0%
!! TAAATATATAGGGGTAATAT+AGG + chr1_1:60134164-60134183 Msa0032990:intron 20.0%
!! CAATGCAAATTAAAATATAC+TGG - chr1_1:60134601-60134620 None:intergenic 20.0%
!! CATGTATATAATAATCCTTA+TGG - chr1_1:60135732-60135751 None:intergenic 20.0%
!! AATAGACAAGAAATAATAGA+TGG - chr1_1:60136004-60136023 None:intergenic 20.0%
!! TTTATAAGTAATATCTAGCA+AGG - chr1_1:60136156-60136175 None:intergenic 20.0%
!! AACGATATATACATAGAAAA+TGG - chr1_1:60136180-60136199 None:intergenic 20.0%
!! TATGTATATATCGTTATAGT+TGG + chr1_1:60136185-60136204 Msa0032990:intron 20.0%
!! ATGTATATATCGTTATAGTT+GGG + chr1_1:60136186-60136205 Msa0032990:intron 20.0%
! AAAGATATATTGGAAGTAGT+TGG - chr1_1:60133688-60133707 None:intergenic 25.0%
! TTAACAACCATCTTAATTAC+AGG + chr1_1:60133740-60133759 Msa0032990:intron 25.0%
! TATTCAAGAAACTAAATGTC+AGG + chr1_1:60133854-60133873 Msa0032990:CDS 25.0%
! CCCTGATCTTATATTAAAAA+TGG + chr1_1:60133914-60133933 Msa0032990:intron 25.0%
! ACCCTACTGATAAAAAATTA+GGG + chr1_1:60133937-60133956 Msa0032990:intron 25.0%
! TCTCTCTGCAATAAATATAT+AGG + chr1_1:60134153-60134172 Msa0032990:intron 25.0%
! CTCTCTGCAATAAATATATA+GGG + chr1_1:60134154-60134173 Msa0032990:intron 25.0%
! TCTCTGCAATAAATATATAG+GGG + chr1_1:60134155-60134174 Msa0032990:intron 25.0%
!! GTTCAAAGTATCATTAAATG+TGG - chr1_1:60134195-60134214 None:intergenic 25.0%
! TGCAAAAGTGACAATTATAA+AGG + chr1_1:60134251-60134270 Msa0032990:intron 25.0%
! AAGTGACAATTATAAAGGAA+CGG + chr1_1:60134256-60134275 Msa0032990:intron 25.0%
!! ACATAAAGCATTAATCAATG+TGG - chr1_1:60134466-60134485 None:intergenic 25.0%
! ATGAAAAAGTAAGAATTCAG+TGG - chr1_1:60134538-60134557 None:intergenic 25.0%
! AACATGCACAATTATTTGTT+TGG + chr1_1:60134645-60134664 Msa0032990:intron 25.0%
!!! TTTTAGCTCTATTCTTATGT+TGG - chr1_1:60134971-60134990 None:intergenic 25.0%
!!! AGTTAAGGCAATACTTTTTA+AGG + chr1_1:60135229-60135248 Msa0032990:CDS 25.0%
!!! TAAAGTCTTTTGGAAAGAAA+TGG - chr1_1:60135272-60135291 None:intergenic 25.0%
!!! CAAACATATCTAAAGTCTTT+TGG - chr1_1:60135282-60135301 None:intergenic 25.0%
! CAAAAGACTTTAGATATGTT+TGG + chr1_1:60135280-60135299 Msa0032990:intron 25.0%
!!! TAGTTTTTCAAATGTTAACC+AGG + chr1_1:60135344-60135363 Msa0032990:intron 25.0%
!! TGTATGATTGTCTGAAATTT+AGG - chr1_1:60135392-60135411 None:intergenic 25.0%
! CTAGCAATATATAAATTCTG+AGG + chr1_1:60135488-60135507 Msa0032990:intron 25.0%
! AATGATATAAGTTAGTAGTC+TGG - chr1_1:60135614-60135633 None:intergenic 25.0%
! ATATAATAATCCTTATGGGA+GGG - chr1_1:60135727-60135746 None:intergenic 25.0%
! TATATAATAATCCTTATGGG+AGG - chr1_1:60135728-60135747 None:intergenic 25.0%
!!! TTTACTTATGGCTTGTTTTT+GGG - chr1_1:60135863-60135882 None:intergenic 25.0%
!!! TTTTACTTATGGCTTGTTTT+TGG - chr1_1:60135864-60135883 None:intergenic 25.0%
! AAGTCAAAATCATTTACAGA+CGG - chr1_1:60135940-60135959 None:intergenic 25.0%
!! ATTATTTCTTGTCTATTGTC+TGG + chr1_1:60136007-60136026 Msa0032990:intron 25.0%
! TTTGCAAGCAAATATCTATT+TGG - chr1_1:60136074-60136093 None:intergenic 25.0%
! TAATACATGCATCATAGTAT+AGG - chr1_1:60136510-60136529 None:intergenic 25.0%
!! TAGCATACTTTAGAAATGAA+AGG + chr1_1:60136586-60136605 Msa0032990:three_prime_UTR 25.0%
GTAAAGAGAAAATGAGTTGT+CGG + chr1_1:60133255-60133274 Msa0032990:exon 30.0%
ATTCTTCCATTGGAAAATTG+AGG - chr1_1:60133356-60133375 None:intergenic 30.0%
!! TGTAATGATAGTTTCTAGTG+AGG - chr1_1:60133468-60133487 None:intergenic 30.0%
TGTTAAAAATTGAGTGGAAG+CGG - chr1_1:60133726-60133745 None:intergenic 30.0%
GATGGTTGTTAAAAATTGAG+TGG - chr1_1:60133732-60133751 None:intergenic 30.0%
AGTTCAACCTGTAATTAAGA+TGG - chr1_1:60133750-60133769 None:intergenic 30.0%
AAACTAAATGTCAGGTTAGT+GGG + chr1_1:60133862-60133881 Msa0032990:intron 30.0%
GACCCTACTGATAAAAAATT+AGG + chr1_1:60133936-60133955 Msa0032990:intron 30.0%
!!! CCCCTAATTTTTTATCAGTA+GGG - chr1_1:60133941-60133960 None:intergenic 30.0%
CCCTACTGATAAAAAATTAG+GGG + chr1_1:60133938-60133957 Msa0032990:intron 30.0%
!!! ACCCCTAATTTTTTATCAGT+AGG - chr1_1:60133942-60133961 None:intergenic 30.0%
GACAATTAAAAAGGAACAGA+GGG - chr1_1:60134017-60134036 None:intergenic 30.0%
TGACAATTAAAAAGGAACAG+AGG - chr1_1:60134018-60134037 None:intergenic 30.0%
!!! ATGCTTTGTTTAGTTTTGCA+AGG + chr1_1:60134431-60134450 Msa0032990:CDS 30.0%
! TAAAGCATTAATCAATGTGG+TGG - chr1_1:60134463-60134482 None:intergenic 30.0%
CATTTCACTTGAGAATTTGA+TGG + chr1_1:60134555-60134574 Msa0032990:intron 30.0%
TATTCTAACATCTGATGATC+AGG - chr1_1:60134735-60134754 None:intergenic 30.0%
TTCACATTTCTATCATGATG+AGG - chr1_1:60134898-60134917 None:intergenic 30.0%
TATTCATATATTTGCAGCCA+AGG + chr1_1:60135142-60135161 Msa0032990:intron 30.0%
AATGTTAACCAGGTACATAA+TGG + chr1_1:60135354-60135373 Msa0032990:intron 30.0%
AAATGATACCATTATGTACC+TGG - chr1_1:60135365-60135384 None:intergenic 30.0%
TATAATAATCCTTATGGGAG+GGG - chr1_1:60135726-60135745 None:intergenic 30.0%
ATGCAGACTATCTGAAAATT+AGG - chr1_1:60135775-60135794 None:intergenic 30.0%
!! TCCAAAAGTGGTTTTACTTA+TGG - chr1_1:60135875-60135894 None:intergenic 30.0%
!! ACCACTTTTGGATTTAAAAG+TGG + chr1_1:60135883-60135902 Msa0032990:intron 30.0%
!! TCCACTTTTAAATCCAAAAG+TGG - chr1_1:60135887-60135906 None:intergenic 30.0%
ATCACATAGACTTCATGAAA+CGG - chr1_1:60136388-60136407 None:intergenic 30.0%
ATGTGATGATTCTTGATTGA+TGG + chr1_1:60136401-60136420 Msa0032990:exon 30.0%
GAAAATTGAGGATGGGAAAA+TGG - chr1_1:60133344-60133363 None:intergenic 35.0%
TCCATTGGAAAATTGAGGAT+GGG - chr1_1:60133351-60133370 None:intergenic 35.0%
TTCCATTGGAAAATTGAGGA+TGG - chr1_1:60133352-60133371 None:intergenic 35.0%
ACCTTGGAATTTCTCAAACT+TGG - chr1_1:60133423-60133442 None:intergenic 35.0%
!! AATGATAGTTTCTAGTGAGG+AGG - chr1_1:60133465-60133484 None:intergenic 35.0%
GTAGTAGTAGTAATACCTGT+CGG - chr1_1:60133507-60133526 None:intergenic 35.0%
TGCAGTAATACAATCAAGTC+AGG + chr1_1:60133614-60133633 Msa0032990:CDS 35.0%
TCCTGAAGATACAAATGATG+CGG - chr1_1:60133643-60133662 None:intergenic 35.0%
CATCATTTGTATCTTCAGGA+GGG + chr1_1:60133643-60133662 Msa0032990:CDS 35.0%
GAAGTAGTTGGAACATACAA+TGG - chr1_1:60133676-60133695 None:intergenic 35.0%
GAAACTAAATGTCAGGTTAG+TGG + chr1_1:60133861-60133880 Msa0032990:intron 35.0%
AACTAAATGTCAGGTTAGTG+GGG + chr1_1:60133863-60133882 Msa0032990:intron 35.0%
TGACAATTATAAAGGAACGG+AGG + chr1_1:60134259-60134278 Msa0032990:intron 35.0%
GACAATTATAAAGGAACGGA+GGG + chr1_1:60134260-60134279 Msa0032990:intron 35.0%
!! CTGCAGCTCTTCTAAAATAT+CGG + chr1_1:60134401-60134420 Msa0032990:CDS 35.0%
TTACTCTGACAAAATAGCTG+CGG + chr1_1:60134499-60134518 Msa0032990:intron 35.0%
GAGCTCTGTTCTATCTTTAA+CGG + chr1_1:60134802-60134821 Msa0032990:intron 35.0%
! AATTCCATCAAGTTGTCACA+TGG - chr1_1:60134874-60134893 None:intergenic 35.0%
TATCAAAACACAAGAATGCG+TGG - chr1_1:60135102-60135121 None:intergenic 35.0%
GATATAATGTACGGCAGTTA+AGG + chr1_1:60135214-60135233 Msa0032990:CDS 35.0%
!! TCTTTTGGAAAGAAATGGCT+TGG - chr1_1:60135267-60135286 None:intergenic 35.0%
CTATCTGAAAATTAGGAGCA+AGG - chr1_1:60135768-60135787 None:intergenic 35.0%
CTATAATGCAGAGTTAACCA+TGG - chr1_1:60135798-60135817 None:intergenic 35.0%
ATACTATGCAGAGTTAACCA+TGG - chr1_1:60135828-60135847 None:intergenic 35.0%
! GCCATAAGTAAAACCACTTT+TGG + chr1_1:60135871-60135890 Msa0032990:intron 35.0%
!!! ATTGTCTGGTTTTCAGATTG+TGG + chr1_1:60136021-60136040 Msa0032990:intron 35.0%
CAATATCTTCAGTATCAGGA+CGG - chr1_1:60136109-60136128 None:intergenic 35.0%
TCCTGATACTGAAGATATTG+AGG + chr1_1:60136109-60136128 Msa0032990:CDS 35.0%
ACCTCAATATCTTCAGTATC+AGG - chr1_1:60136113-60136132 None:intergenic 35.0%
!! AGCAAATTTGCTAGATCACT+TGG + chr1_1:60136249-60136268 Msa0032990:intron 35.0%
AAATAACATCTGCGCAACAT+AGG - chr1_1:60136288-60136307 None:intergenic 35.0%
TATGTTGCGCAGATGTTATT+TGG + chr1_1:60136287-60136306 Msa0032990:intron 35.0%
ACAAAGTCTGTTTGACAAAG+CGG + chr1_1:60136340-60136359 Msa0032990:CDS 35.0%
AGTATAGGATACAAGCTGTA+AGG - chr1_1:60136495-60136514 None:intergenic 35.0%
GATATGTTCCGCTATATAGA+AGG + chr1_1:60136537-60136556 Msa0032990:three_prime_UTR 35.0%
ACTTGTGTCCTTCTATATAG+CGG - chr1_1:60136548-60136567 None:intergenic 35.0%
! TCCCATCCTCAATTTTCCAA+TGG + chr1_1:60133347-60133366 Msa0032990:CDS 40.0%
GCCAAGTTTGAGAAATTCCA+AGG + chr1_1:60133419-60133438 Msa0032990:CDS 40.0%
AAGATAAAGACGAAACCGAC+AGG + chr1_1:60133489-60133508 Msa0032990:CDS 40.0%
ACCGCATCATTTGTATCTTC+AGG + chr1_1:60133639-60133658 Msa0032990:CDS 40.0%
GCATCATTTGTATCTTCAGG+AGG + chr1_1:60133642-60133661 Msa0032990:CDS 40.0%
!! TCGTCTAAGAATTCGAGTTG+AGG - chr1_1:60133780-60133799 None:intergenic 40.0%
CTCGAATTCTTAGACGATGA+AGG + chr1_1:60133783-60133802 Msa0032990:CDS 40.0%
! GGAATTGTCAAGGCTTTTCT+TGG + chr1_1:60133824-60133843 Msa0032990:CDS 40.0%
!! CAGCTCTTCTAAAATATCGG+TGG + chr1_1:60134404-60134423 Msa0032990:CDS 40.0%
AAGCTTTCGATCACTTAAGC+TGG - chr1_1:60134676-60134695 None:intergenic 40.0%
GATCGAAAGCTTGTAGATAG+TGG + chr1_1:60134684-60134703 Msa0032990:CDS 40.0%
! TGTAGATAGTGGTGATGAGA+TGG + chr1_1:60134695-60134714 Msa0032990:CDS 40.0%
AACAGAGCTCAGAGATTTAC+TGG - chr1_1:60134792-60134811 None:intergenic 40.0%
TCGGGGTTGGATATAATGTA+CGG + chr1_1:60135205-60135224 Msa0032990:CDS 40.0%
! CAAATGCACGTTTGTCGTTT+GGG + chr1_1:60135313-60135332 Msa0032990:intron 40.0%
AATACTGCACCAAATGGCAT+AGG - chr1_1:60135675-60135694 None:intergenic 40.0%
!! TGCCATTTGGTGCAGTATTT+CGG + chr1_1:60135676-60135695 Msa0032990:intron 40.0%
!! TTTCGGTGTTATCCAGAGTA+AGG + chr1_1:60135693-60135712 Msa0032990:intron 40.0%
TTTCAGATAGTCTGCATCCA+TGG + chr1_1:60135778-60135797 Msa0032990:intron 40.0%
TGCATTATAGTCTGCATCCA+TGG + chr1_1:60135808-60135827 Msa0032990:intron 40.0%
!!! GCTTGTTTTTGGGTGATCTA+GGG - chr1_1:60135853-60135872 None:intergenic 40.0%
CCAACAATGTGCGAATTTCA+CGG - chr1_1:60135916-60135935 None:intergenic 40.0%
!! GAAAGTGTTCAGTGATGACA+AGG + chr1_1:60136043-60136062 Msa0032990:CDS 40.0%
TGTTCAGTGATGACAAGGAT+AGG + chr1_1:60136048-60136067 Msa0032990:CDS 40.0%
AAATGAAAGGAAACGTTCCG+TGG + chr1_1:60136599-60136618 Msa0032990:three_prime_UTR 40.0%
AAGGGTGAGATTTCATACCA+CGG - chr1_1:60136619-60136638 Msa0033000:three_prime_UTR 40.0%
!! AGAGTGTTGTTGAGTGGAAC+TGG - chr1_1:60133301-60133320 None:intergenic 45.0%
TGAGGATGGGAAAATGGAGT+GGG - chr1_1:60133338-60133357 None:intergenic 45.0%
TTGAGGATGGGAAAATGGAG+TGG - chr1_1:60133339-60133358 None:intergenic 45.0%
GCGAAGGGAAATTCTTCCAT+TGG - chr1_1:60133366-60133385 None:intergenic 45.0%
!! GTTTCTAGTGAGGAGGATGA+AGG - chr1_1:60133458-60133477 None:intergenic 45.0%
CAGTTGTTTACCTCCAGACT+TGG + chr1_1:60133587-60133606 Msa0032990:intron 45.0%
TGTTTACCTCCAGACTTGGA+AGG + chr1_1:60133591-60133610 Msa0032990:CDS 45.0%
ATTACTGCACCTTCCAAGTC+TGG - chr1_1:60133603-60133622 None:intergenic 45.0%
CTGCGTCATCCCAATCAAAT+TGG + chr1_1:60133888-60133907 Msa0032990:intron 45.0%
CGTCATCCCAATCAAATTGG+AGG + chr1_1:60133891-60133910 Msa0032990:intron 45.0%
TCAGGGCCTCCAATTTGATT+GGG - chr1_1:60133900-60133919 None:intergenic 45.0%
ATCAGGGCCTCCAATTTGAT+TGG - chr1_1:60133901-60133920 None:intergenic 45.0%
AAGGAACGGAGGGAGTAATT+TGG + chr1_1:60134270-60134289 Msa0032990:intron 45.0%
AAAGCCGTATTTCCAGATGC+CGG + chr1_1:60134376-60134395 Msa0032990:CDS 45.0%
!! TTTTAGAAGAGCTGCAGCAC+CGG - chr1_1:60134398-60134417 None:intergenic 45.0%
TGGACAGAATTGCATCAGCA+TGG - chr1_1:60134581-60134600 None:intergenic 45.0%
! AGATAGTGGTGATGAGATGG+TGG + chr1_1:60134698-60134717 Msa0032990:CDS 45.0%
ACAGCCATGTGACAACTTGA+TGG + chr1_1:60134867-60134886 Msa0032990:intron 45.0%
CGTGGATTCCACATGATAAG+GGG - chr1_1:60135168-60135187 None:intergenic 45.0%
GCGTGGATTCCACATGATAA+GGG - chr1_1:60135169-60135188 None:intergenic 45.0%
! ACATCTTTGCTATACAGGCG+TGG - chr1_1:60135186-60135205 None:intergenic 45.0%
CGCCTGTATAGCAAAGATGT+CGG + chr1_1:60135186-60135205 Msa0032990:CDS 45.0%
GCCTGTATAGCAAAGATGTC+GGG + chr1_1:60135187-60135206 Msa0032990:CDS 45.0%
CCTGTATAGCAAAGATGTCG+GGG + chr1_1:60135188-60135207 Msa0032990:CDS 45.0%
TATAGCAAAGATGTCGGGGT+TGG + chr1_1:60135192-60135211 Msa0032990:CDS 45.0%
GCAAATGCACGTTTGTCGTT+TGG + chr1_1:60135312-60135331 Msa0032990:intron 45.0%
CATATGCGACCTATGCCATT+TGG + chr1_1:60135663-60135682 Msa0032990:intron 45.0%
CACCGAAATACTGCACCAAA+TGG - chr1_1:60135681-60135700 None:intergenic 45.0%
ATCCTTATGGGAGGGGAAAA+AGG - chr1_1:60135719-60135738 None:intergenic 45.0%
!!! GGCTTGTTTTTGGGTGATCT+AGG - chr1_1:60135854-60135873 None:intergenic 45.0%
CCGTGAAATTCGCACATTGT+TGG + chr1_1:60135913-60135932 Msa0032990:intron 45.0%
ATCTTCAGTATCAGGACGGT+TGG - chr1_1:60136105-60136124 None:intergenic 45.0%
GAAGAACAGAAACCAGAGCA+AGG + chr1_1:60136317-60136336 Msa0032990:CDS 45.0%
AACAGACTTTGTCCTTGCTC+TGG - chr1_1:60136332-60136351 None:intergenic 45.0%
!! AGGGTGAGAGTGTTGTTGAG+TGG - chr1_1:60133307-60133326 None:intergenic 50.0%
TGGGAAAATGGAGTGGGTGA+GGG - chr1_1:60133332-60133351 None:intergenic 50.0%
ATGGGAAAATGGAGTGGGTG+AGG - chr1_1:60133333-60133352 None:intergenic 50.0%
AAACTTGGCGCCAAGTTTGG+AGG - chr1_1:60133408-60133427 None:intergenic 50.0%
CTCAAACTTGGCGCCAAGTT+TGG - chr1_1:60133411-60133430 None:intergenic 50.0%
! AAGGAGGTTCAGGTTCACCT+TGG - chr1_1:60133439-60133458 None:intergenic 50.0%
TCTAGTGAGGAGGATGAAGG+AGG - chr1_1:60133455-60133474 None:intergenic 50.0%
!! TGGAGCTCTGGGAATTGTCA+AGG + chr1_1:60133814-60133833 Msa0032990:CDS 50.0%
!! AGCACCGGCATCTGGAAATA+CGG - chr1_1:60134383-60134402 None:intergenic 50.0%
TTCCACATGATAAGGGGCCT+TGG - chr1_1:60135162-60135181 None:intergenic 50.0%
GGCGTGGATTCCACATGATA+AGG - chr1_1:60135170-60135189 None:intergenic 50.0%
! CCCCGACATCTTTGCTATAC+AGG - chr1_1:60135191-60135210 None:intergenic 50.0%
! TGCACGTTTGTCGTTTGGGT+AGG + chr1_1:60135317-60135336 Msa0032990:intron 50.0%
AGGGGAAAAAGGCCTTACTC+TGG - chr1_1:60135708-60135727 None:intergenic 50.0%
AGTCTGTTTGACAAAGCGGC+AGG + chr1_1:60136344-60136363 Msa0032990:CDS 50.0%
TATCCACGGCCCTTCTTCGT+CGG + chr1_1:60133218-60133237 Msa0032990:five_prime_UTR 55.0%
TCTTACCCCCCGACGAAGAA+GGG - chr1_1:60133230-60133249 None:intergenic 55.0%
TTCTTACCCCCCGACGAAGA+AGG - chr1_1:60133231-60133250 None:intergenic 55.0%
AATGGAGTGGGTGAGGGTGA+GGG - chr1_1:60133326-60133345 None:intergenic 55.0%
AAATGGAGTGGGTGAGGGTG+AGG - chr1_1:60133327-60133346 None:intergenic 55.0%
GGTGGAGGTTGAAGAGCGAA+GGG - chr1_1:60133381-60133400 None:intergenic 55.0%
AGGTGGAGGTTGAAGAGCGA+AGG - chr1_1:60133382-60133401 None:intergenic 55.0%
AAGTTTGGAGGTGGAGGTGG+AGG - chr1_1:60133396-60133415 None:intergenic 55.0%
TCCACCTCCACCTCCAAACT+TGG + chr1_1:60133395-60133414 Msa0032990:CDS 55.0%
GAGGAGGATGAAGGAGGTTC+AGG - chr1_1:60133449-60133468 None:intergenic 55.0%
ACTGCACCTTCCAAGTCTGG+AGG - chr1_1:60133600-60133619 None:intergenic 55.0%
! AGACGATGAAGGCGCACAGT+TGG + chr1_1:60133794-60133813 Msa0032990:CDS 55.0%
AGCCAAGGCCCCTTATCATG+TGG + chr1_1:60135157-60135176 Msa0032990:intron 55.0%
! GGCCTTTTTCCCCTCCCATA+AGG + chr1_1:60135714-60135733 Msa0032990:intron 55.0%
! AGCGGCAGGCGTTTTCTCTT+CGG + chr1_1:60136358-60136377 Msa0032990:CDS 55.0%
ATCCACGGCCCTTCTTCGTC+GGG + chr1_1:60133219-60133238 Msa0032990:five_prime_UTR 60.0%
GCCAAGTTTGGAGGTGGAGG+TGG - chr1_1:60133399-60133418 None:intergenic 60.0%
CTTGGCGCCAAGTTTGGAGG+TGG - chr1_1:60133405-60133424 None:intergenic 60.0%
AAGGCGCACAGTTGGAGCTC+TGG + chr1_1:60133802-60133821 Msa0032990:CDS 60.0%
AGGCGCACAGTTGGAGCTCT+GGG + chr1_1:60133803-60133822 Msa0032990:CDS 60.0%
TCCACGGCCCTTCTTCGTCG+GGG + chr1_1:60133220-60133239 Msa0032990:five_prime_UTR 65.0%
GGCGCCAAGTTTGGAGGTGG+AGG - chr1_1:60133402-60133421 None:intergenic 65.0%
!! AGAGCTGCAGCACCGGCATC+TGG - chr1_1:60134391-60134410 None:intergenic 65.0%
CCACGGCCCTTCTTCGTCGG+GGG + chr1_1:60133221-60133240 Msa0032990:five_prime_UTR 70.0%
CACGGCCCTTCTTCGTCGGG+GGG + chr1_1:60133222-60133241 Msa0032990:five_prime_UTR 70.0%
CCCCCGACGAAGAAGGGCCG+TGG - chr1_1:60133224-60133243 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 60133205 60136640 60133205 ID=Msa0032990;Name=Msa0032990
chr1_1 mRNA 60133205 60136640 60133205 ID=Msa0032990-mRNA-1;Parent=Msa0032990;Name=Msa0032990-mRNA-1;_AED=0.08;_eAED=0.08;_QI=61|0.85|1|1|1|1|8|234|312
chr1_1 exon 60133205 60133510 60133205 ID=Msa0032990-mRNA-1:exon:18764;Parent=Msa0032990-mRNA-1
chr1_1 exon 60133590 60133677 60133590 ID=Msa0032990-mRNA-1:exon:18765;Parent=Msa0032990-mRNA-1
chr1_1 exon 60133762 60133875 60133762 ID=Msa0032990-mRNA-1:exon:18766;Parent=Msa0032990-mRNA-1
chr1_1 exon 60134370 60134452 60134370 ID=Msa0032990-mRNA-1:exon:18767;Parent=Msa0032990-mRNA-1
chr1_1 exon 60134677 60134791 60134677 ID=Msa0032990-mRNA-1:exon:18768;Parent=Msa0032990-mRNA-1
chr1_1 exon 60135159 60135250 60135159 ID=Msa0032990-mRNA-1:exon:18769;Parent=Msa0032990-mRNA-1
chr1_1 exon 60136037 60136130 60136037 ID=Msa0032990-mRNA-1:exon:18770;Parent=Msa0032990-mRNA-1
chr1_1 exon 60136299 60136640 60136299 ID=Msa0032990-mRNA-1:exon:18771;Parent=Msa0032990-mRNA-1
chr1_1 five_prime_UTR 60133205 60133265 60133205 ID=Msa0032990-mRNA-1:five_prime_utr;Parent=Msa0032990-mRNA-1
chr1_1 CDS 60133266 60133510 60133266 ID=Msa0032990-mRNA-1:cds;Parent=Msa0032990-mRNA-1
chr1_1 CDS 60133590 60133677 60133590 ID=Msa0032990-mRNA-1:cds;Parent=Msa0032990-mRNA-1
chr1_1 CDS 60133762 60133875 60133762 ID=Msa0032990-mRNA-1:cds;Parent=Msa0032990-mRNA-1
chr1_1 CDS 60134370 60134452 60134370 ID=Msa0032990-mRNA-1:cds;Parent=Msa0032990-mRNA-1
chr1_1 CDS 60134677 60134791 60134677 ID=Msa0032990-mRNA-1:cds;Parent=Msa0032990-mRNA-1
chr1_1 CDS 60135159 60135250 60135159 ID=Msa0032990-mRNA-1:cds;Parent=Msa0032990-mRNA-1
chr1_1 CDS 60136037 60136130 60136037 ID=Msa0032990-mRNA-1:cds;Parent=Msa0032990-mRNA-1
chr1_1 CDS 60136299 60136406 60136299 ID=Msa0032990-mRNA-1:cds;Parent=Msa0032990-mRNA-1
chr1_1 three_prime_UTR 60136407 60136640 60136407 ID=Msa0032990-mRNA-1:three_prime_utr;Parent=Msa0032990-mRNA-1
Gene Sequence

>Msa0032990

ATGAGTTGTCGGAGCTTAACTTGCTGCAACATCCAGTTCCACTCAACAACACTCTCACCCTCACCCTCACCCACTCCATTTTCCCATCCTCAATTTTCCAATGGAAGAATTTCCCTTCGCTCTTCAACCTCCACCTCCACCTCCAAACTTGGCGCCAAGTTTGAGAAATTCCAAGGTGAACCTGAACCTCCTTCATCCTCCTCACTAGAAACTATCATTACACAAGATAAAGACGAAACCGACAGTTGTTTACCTCCAGACTTGGAAGGTGCAGTAATACAATCAAGTCAGGCTACCGCATCATTTGTATCTTCAGGAGGGATGAGAGCCATTGTTGAACTTTTAATTCCTCAACTCGAATTCTTAGACGATGAAGGCGCACAGTTGGAGCTCTGGGAATTGTCAAGGCTTTTCTTGGATACACTTATTCAAGAAACTAAATGTCAGAAAGTTAAAGCCGTATTTCCAGATGCCGGTGCTGCAGCTCTTCTAAAATATCGGTGGAAAGATGCTTTGTTTAGTTTTGCAAGCTTAAGTGATCGAAAGCTTGTAGATAGTGGTGATGAGATGGTGGTTATGATTGTTCCTGATCATCAGATGTTAGAATATGTAGAGAAAATTGCATCTACTCTCTCTGATGATCCACCAAGGCCCCTTATCATGTGGAATCCACGCCTGTATAGCAAAGATGTCGGGGTTGGATATAATGTACGGCAGTTAAGGCAATACTTTTTAAGATTGTGGAAAGTGTTCAGTGATGACAAGGATAGGCCAAATAGATATTTGCTTGCAAAAGAATATGCCAACCGTCCTGATACTGAAGATATTGAGATGTTATTTGGCAACAACGAAGAACAGAAACCAGAGCAAGGACAAAGTCTGTTTGACAAAGCGGCAGGCGTTTTCTCTTCGGTTAACCGTTTCATGAAGTCTATGTGA

Protein sequence

>Msa0032990

MSCRSLTCCNIQFHSTTLSPSPSPTPFSHPQFSNGRISLRSSTSTSTSKLGAKFEKFQGEPEPPSSSSLETIITQDKDETDSCLPPDLEGAVIQSSQATASFVSSGGMRAIVELLIPQLEFLDDEGAQLELWELSRLFLDTLIQETKCQKVKAVFPDAGAAALLKYRWKDALFSFASLSDRKLVDSGDEMVVMIVPDHQMLEYVEKIASTLSDDPPRPLIMWNPRLYSKDVGVGYNVRQLRQYFLRLWKVFSDDKDRPNRYLLAKEYANRPDTEDIEMLFGNNEEQKPEQGQSLFDKAAGVFSSVNRFMKSM*