AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1410770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1410770 MtrunA17_Chr4g0075251 85.714 266 11 6 2 245 6 266 9.57e-151 444
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1410770 AT4G04350.1 63.115 244 61 4 29 245 28 269 7.93e-100 311

Find 55 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGTCCATTTGTAATATTC+AGG 0.231341 tig0023706:+279 None:intergenic
ATGTCGAGAATATAATATTT+AGG 0.252671 tig0023706:+1942 None:intergenic
AGCGCCATCTTCATTCATTC+AGG 0.285885 tig0023706:-2345 None:intergenic
AGGCTGAAGTTCCAGTTAAT+TGG 0.288483 tig0023706:-115 Msa1410770:CDS
GCCACTTGGGCTCAATTTCA+TGG 0.308548 tig0023706:+2027 None:intergenic
TTTGTAATATTCAGGTTCTA+TGG 0.337810 tig0023706:+287 None:intergenic
AAGAGTGTGATGAGAGGAAT+TGG 0.338765 tig0023706:+2252 None:intergenic
AAAGAGAGGATTGGCATATC+AGG 0.344164 tig0023706:-235 Msa1410770:intron
TATTAATCGCTTTACTTCTC+AGG 0.344763 tig0023706:-1339 Msa1410770:intron
TCTTTACAGTTGAAATCATT+AGG 0.364539 tig0023706:-342 Msa1410770:intron
CATTGTTGAGATGAAGCATT+TGG 0.364818 tig0023706:+2276 None:intergenic
AGTGCAGGGCACCAATTAAC+TGG 0.365890 tig0023706:+104 None:intergenic
AAAGGATAAGCTCTGTTAAC+AGG 0.401797 tig0023706:+2050 None:intergenic
GCCAACACCGTGCCAAGTGC+AGG 0.412233 tig0023706:+89 None:intergenic
TGGTCACAGTGGTGAGCTTT+GGG 0.417119 tig0023706:+1363 None:intergenic
AGAAGTAAAGCGATTAATAT+TGG 0.417234 tig0023706:+1343 None:intergenic
TTGGTCACAGTGGTGAGCTT+TGG 0.422695 tig0023706:+1362 None:intergenic
GCCAATGAGGAGGTTATTGA+TGG 0.454727 tig0023706:-68 Msa1410770:CDS
AATATTACAAATGGACTCAA+TGG 0.456678 tig0023706:-275 Msa1410770:CDS
AAATGAAAGAACAGAGAAAG+AGG 0.458163 tig0023706:+2315 None:intergenic
CATTAGGATTCTCATATGAC+TGG 0.458393 tig0023706:-326 Msa1410770:CDS
TCAATTGAAAACCTAGGGTA+AGG 0.462945 tig0023706:+1915 None:intergenic
GTTAATTGGTGCCCTGCACT+TGG 0.464628 tig0023706:-101 Msa1410770:CDS
TAGAACCTGAATATTACAAA+TGG 0.477618 tig0023706:-284 Msa1410770:CDS
GAAGATGTTGTTCTTCTGAA+TGG 0.481534 tig0023706:+2167 None:intergenic
CAGTATACCTTTCTTACTAC+AGG 0.482607 tig0023706:+23 None:intergenic
GATGTATCGATATCATCATC+TGG 0.484767 tig0023706:+1969 None:intergenic
CTTCTGAATGGTGTGGGAAA+AGG 0.496517 tig0023706:+2179 None:intergenic
ACCATCAATAACCTCCTCAT+TGG 0.502814 tig0023706:+67 None:intergenic
TCGACATGTTCCCTTACCCT+AGG 0.504663 tig0023706:-1926 Msa1410770:intron
GAGGAGAAGAGTGTGATGAG+AGG 0.524661 tig0023706:+2246 None:intergenic
AAATGATAAACTGAACGAAA+CGG 0.534449 tig0023706:-2087 Msa1410770:CDS
CCCTGCACTTGGCACGGTGT+TGG 0.541153 tig0023706:-90 Msa1410770:CDS
TTGGGCTCAATTTCATGGAA+AGG 0.544166 tig0023706:+2032 None:intergenic
TGGTCATCCTGTAGTAAGAA+AGG 0.548024 tig0023706:-30 None:intergenic
TTACATGTTGGACATCCACT+TGG 0.560224 tig0023706:-1803 Msa1410770:CDS
CTGCGACTGATATTCTAGCT+AGG 0.571493 tig0023706:-1775 Msa1410770:CDS
CACGGTGTTGGCCAATGAGG+AGG 0.576162 tig0023706:-78 Msa1410770:CDS
TACAACTGTGACTGTGACTG+CGG 0.591231 tig0023706:+2129 None:intergenic
TCCATGAAATTGAGCCCAAG+TGG 0.593347 tig0023706:-2028 Msa1410770:CDS
GCTAGGTTTAAACGAATGCA+AGG 0.598535 tig0023706:-1758 Msa1410770:CDS
CCAACACCGTGCCAAGTGCA+GGG 0.600748 tig0023706:+90 None:intergenic
TTGGTGCCCTGCACTTGGCA+CGG 0.606496 tig0023706:-96 Msa1410770:CDS
GTTGTTCTTCTGAATGGTGT+GGG 0.617477 tig0023706:+2173 None:intergenic
CAGTTGTAGAATCAGAAACT+CGG 0.619031 tig0023706:-2114 Msa1410770:CDS
TGGCACGGTGTTGGCCAATG+AGG 0.621507 tig0023706:-81 Msa1410770:CDS
ATTAGGATTCTCATATGACT+GGG 0.624736 tig0023706:-325 Msa1410770:CDS
CAATTGAAAACCTAGGGTAA+GGG 0.631350 tig0023706:+1916 None:intergenic
TGTTGTTCTTCTGAATGGTG+TGG 0.639053 tig0023706:+2172 None:intergenic
AGTGGAGCTGGGTTACATGT+TGG 0.662831 tig0023706:-1815 Msa1410770:CDS
TCAGTCGCAGTGTATCCAAG+TGG 0.670569 tig0023706:+1788 None:intergenic
ATTGATGGTGTGAGTGAACG+CGG 0.670993 tig0023706:-53 Msa1410770:CDS
GAATGGTGTGGGAAAAGGAA+CGG 0.696441 tig0023706:+2184 None:intergenic
GCGATTAATATTGGTCACAG+TGG 0.700227 tig0023706:+1352 None:intergenic
GATGGTGTGAGTGAACGCGG+TGG 0.812165 tig0023706:-50 Msa1410770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATACAATAATTAAATACA+AGG + tig0023706:1107-1126 None:intergenic 10.0%
!! TCTAAATAATTATATTGAAA+AGG - tig0023706:1713-1732 Msa1410770:intron 10.0%
!! TAATACAATAATTAAATACA+AGG + tig0023706:1107-1126 None:intergenic 10.0%
!! TCTAAATAATTATATTGAAA+AGG - tig0023706:1713-1732 Msa1410770:intron 10.0%
!! TAGTAATTGAATACTATAAT+CGG + tig0023706:826-845 None:intergenic 15.0%
!!! ATAATTTCCATCTTTTTTAT+TGG - tig0023706:959-978 Msa1410770:intron 15.0%
!!! ATTTTCTATCTAAATATACA+GGG + tig0023706:1566-1585 None:intergenic 15.0%
!! TTTGAACTATAAAAACAATA+AGG - tig0023706:1809-1828 Msa1410770:CDS 15.0%
!! TAGTAATTGAATACTATAAT+CGG + tig0023706:826-845 None:intergenic 15.0%
!!! ATAATTTCCATCTTTTTTAT+TGG - tig0023706:959-978 Msa1410770:intron 15.0%
!!! ATTTTCTATCTAAATATACA+GGG + tig0023706:1566-1585 None:intergenic 15.0%
!! TTTGAACTATAAAAACAATA+AGG - tig0023706:1809-1828 Msa1410770:CDS 15.0%
!! ATGTCGAGAATATAATATTT+AGG + tig0023706:429-448 None:intergenic 20.0%
!! CAGCAAATGTTAATAATTAT+AGG + tig0023706:1145-1164 None:intergenic 20.0%
!! TGAAAATTTGATAAAGTTGA+AGG + tig0023706:1484-1503 None:intergenic 20.0%
!!! TTTTTTTCTTTCTGAACTTT+TGG - tig0023706:1509-1528 Msa1410770:intron 20.0%
!!! TTTTCTATCTAAATATACAG+GGG + tig0023706:1565-1584 None:intergenic 20.0%
!!! CATTTTCTATCTAAATATAC+AGG + tig0023706:1567-1586 None:intergenic 20.0%
!! AAAATGAAAATATGAGTTTC+AGG - tig0023706:1581-1600 Msa1410770:intron 20.0%
!!! AAAAGAGAAATTCCTTTTAT+GGG - tig0023706:1988-2007 Msa1410770:CDS 20.0%
!! AACATCATATAAAAAAACTC+AGG - tig0023706:2233-2252 Msa1410770:CDS 20.0%
!! ATGTCGAGAATATAATATTT+AGG + tig0023706:429-448 None:intergenic 20.0%
!! CAGCAAATGTTAATAATTAT+AGG + tig0023706:1145-1164 None:intergenic 20.0%
!! TGAAAATTTGATAAAGTTGA+AGG + tig0023706:1484-1503 None:intergenic 20.0%
!!! TTTTTTTCTTTCTGAACTTT+TGG - tig0023706:1509-1528 Msa1410770:intron 20.0%
!!! TTTTCTATCTAAATATACAG+GGG + tig0023706:1565-1584 None:intergenic 20.0%
!!! CATTTTCTATCTAAATATAC+AGG + tig0023706:1567-1586 None:intergenic 20.0%
!! AAAATGAAAATATGAGTTTC+AGG - tig0023706:1581-1600 Msa1410770:intron 20.0%
!!! AAAAGAGAAATTCCTTTTAT+GGG - tig0023706:1988-2007 Msa1410770:CDS 20.0%
!! AACATCATATAAAAAAACTC+AGG - tig0023706:2233-2252 Msa1410770:CDS 20.0%
! AAATGATAAACTGAACGAAA+CGG - tig0023706:281-300 Msa1410770:CDS 25.0%
! TAACTTCAATTGAAAACCTA+GGG + tig0023706:461-480 None:intergenic 25.0%
! AGAAGTAAAGCGATTAATAT+TGG + tig0023706:1028-1047 None:intergenic 25.0%
! TCTTCAAATGGATCAAAATT+GGG + tig0023706:1209-1228 None:intergenic 25.0%
! ATCTTCAAATGGATCAAAAT+TGG + tig0023706:1210-1229 None:intergenic 25.0%
! AAAGAGTAAAGATCTTCAAA+TGG + tig0023706:1221-1240 None:intergenic 25.0%
! ATTTGAAGATCTTTACTCTT+TGG - tig0023706:1220-1239 Msa1410770:intron 25.0%
! GAATAGTTAAGTAGTTAGTT+AGG - tig0023706:1267-1286 Msa1410770:intron 25.0%
! ATCAACTAGTCAATATGATT+TGG - tig0023706:1305-1324 Msa1410770:intron 25.0%
!! TTAGATTGGTGAATTTTAAG+TGG + tig0023706:1425-1444 None:intergenic 25.0%
!!! ATCGAAATTTGCTTTTAGAT+TGG + tig0023706:1439-1458 None:intergenic 25.0%
!! GCAATTTGATTTCTCTAATT+TGG + tig0023706:1687-1706 None:intergenic 25.0%
!! GTTTTTATAGTTCAAAGCAT+AGG + tig0023706:1805-1824 None:intergenic 25.0%
! GAATTGTTAATTCAAGTAAC+TGG - tig0023706:1904-1923 Msa1410770:intron 25.0%
!! TAAAAGGAATTTCTCTTTTC+AGG + tig0023706:1987-2006 None:intergenic 25.0%
!! GAAAAGAGAAATTCCTTTTA+TGG - tig0023706:1987-2006 Msa1410770:CDS 25.0%
! TCTTTACAGTTGAAATCATT+AGG - tig0023706:2026-2045 Msa1410770:CDS 25.0%
!! TTTGTAATATTCAGGTTCTA+TGG + tig0023706:2084-2103 None:intergenic 25.0%
! TAGAACCTGAATATTACAAA+TGG - tig0023706:2084-2103 Msa1410770:CDS 25.0%
!! AATATTACAAATGGACTCAA+TGG - tig0023706:2093-2112 Msa1410770:CDS 25.0%
! AAATGATAAACTGAACGAAA+CGG - tig0023706:281-300 Msa1410770:CDS 25.0%
! TAACTTCAATTGAAAACCTA+GGG + tig0023706:461-480 None:intergenic 25.0%
! AGAAGTAAAGCGATTAATAT+TGG + tig0023706:1028-1047 None:intergenic 25.0%
! TCTTCAAATGGATCAAAATT+GGG + tig0023706:1209-1228 None:intergenic 25.0%
! ATCTTCAAATGGATCAAAAT+TGG + tig0023706:1210-1229 None:intergenic 25.0%
! AAAGAGTAAAGATCTTCAAA+TGG + tig0023706:1221-1240 None:intergenic 25.0%
! ATTTGAAGATCTTTACTCTT+TGG - tig0023706:1220-1239 Msa1410770:intron 25.0%
! GAATAGTTAAGTAGTTAGTT+AGG - tig0023706:1267-1286 Msa1410770:intron 25.0%
! ATCAACTAGTCAATATGATT+TGG - tig0023706:1305-1324 Msa1410770:intron 25.0%
!! TTAGATTGGTGAATTTTAAG+TGG + tig0023706:1425-1444 None:intergenic 25.0%
!!! ATCGAAATTTGCTTTTAGAT+TGG + tig0023706:1439-1458 None:intergenic 25.0%
!! GCAATTTGATTTCTCTAATT+TGG + tig0023706:1687-1706 None:intergenic 25.0%
!! GTTTTTATAGTTCAAAGCAT+AGG + tig0023706:1805-1824 None:intergenic 25.0%
! GAATTGTTAATTCAAGTAAC+TGG - tig0023706:1904-1923 Msa1410770:intron 25.0%
!! TAAAAGGAATTTCTCTTTTC+AGG + tig0023706:1987-2006 None:intergenic 25.0%
!! GAAAAGAGAAATTCCTTTTA+TGG - tig0023706:1987-2006 Msa1410770:CDS 25.0%
! TCTTTACAGTTGAAATCATT+AGG - tig0023706:2026-2045 Msa1410770:CDS 25.0%
!! TTTGTAATATTCAGGTTCTA+TGG + tig0023706:2084-2103 None:intergenic 25.0%
! TAGAACCTGAATATTACAAA+TGG - tig0023706:2084-2103 Msa1410770:CDS 25.0%
!! AATATTACAAATGGACTCAA+TGG - tig0023706:2093-2112 Msa1410770:CDS 25.0%
AAATGAAAGAACAGAGAAAG+AGG + tig0023706:56-75 None:intergenic 30.0%
GTAACTTCAATTGAAAACCT+AGG + tig0023706:462-481 None:intergenic 30.0%
!! ATTATCCATTTTTGTTGCAG+TGG - tig0023706:535-554 Msa1410770:intron 30.0%
ATATAATGTGTTGCATCCAA+TGG - tig0023706:633-652 Msa1410770:intron 30.0%
TATAATGTGTTGCATCCAAT+GGG - tig0023706:634-653 Msa1410770:intron 30.0%
CACAAAGCCAATAAAAAAGA+TGG + tig0023706:969-988 None:intergenic 30.0%
TATTAATCGCTTTACTTCTC+AGG - tig0023706:1029-1048 Msa1410770:intron 30.0%
!! CATATTGACTAGTTGATAGA+GGG + tig0023706:1302-1321 None:intergenic 30.0%
!! TCATATTGACTAGTTGATAG+AGG + tig0023706:1303-1322 None:intergenic 30.0%
AAAACATGAAGGATTGATTG+AGG + tig0023706:1332-1351 None:intergenic 30.0%
GAACAAACACAAAAACATGA+AGG + tig0023706:1343-1362 None:intergenic 30.0%
! GGATCTAAATAATTGAGTTG+TGG - tig0023706:1734-1753 Msa1410770:intron 30.0%
TAAATACATATCAGAGCCAT+GGG + tig0023706:1964-1983 None:intergenic 30.0%
ATTAGTAATGCACCCATAAA+AGG + tig0023706:2003-2022 None:intergenic 30.0%
ATTAGGATTCTCATATGACT+GGG - tig0023706:2043-2062 Msa1410770:CDS 30.0%
TGAGTCCATTTGTAATATTC+AGG + tig0023706:2092-2111 None:intergenic 30.0%
!! TTTCTACAGCTTTTAAAGAG+AGG - tig0023706:2119-2138 Msa1410770:CDS 30.0%
CCATAAGAACATCAATACTT+AGG + tig0023706:2206-2225 None:intergenic 30.0%
!! CCTAAGTATTGATGTTCTTA+TGG - tig0023706:2203-2222 Msa1410770:CDS 30.0%
AAATGAAAGAACAGAGAAAG+AGG + tig0023706:56-75 None:intergenic 30.0%
GTAACTTCAATTGAAAACCT+AGG + tig0023706:462-481 None:intergenic 30.0%
!! ATTATCCATTTTTGTTGCAG+TGG - tig0023706:535-554 Msa1410770:intron 30.0%
ATATAATGTGTTGCATCCAA+TGG - tig0023706:633-652 Msa1410770:intron 30.0%
TATAATGTGTTGCATCCAAT+GGG - tig0023706:634-653 Msa1410770:intron 30.0%
CACAAAGCCAATAAAAAAGA+TGG + tig0023706:969-988 None:intergenic 30.0%
TATTAATCGCTTTACTTCTC+AGG - tig0023706:1029-1048 Msa1410770:intron 30.0%
!! CATATTGACTAGTTGATAGA+GGG + tig0023706:1302-1321 None:intergenic 30.0%
!! TCATATTGACTAGTTGATAG+AGG + tig0023706:1303-1322 None:intergenic 30.0%
AAAACATGAAGGATTGATTG+AGG + tig0023706:1332-1351 None:intergenic 30.0%
GAACAAACACAAAAACATGA+AGG + tig0023706:1343-1362 None:intergenic 30.0%
! GGATCTAAATAATTGAGTTG+TGG - tig0023706:1734-1753 Msa1410770:intron 30.0%
TAAATACATATCAGAGCCAT+GGG + tig0023706:1964-1983 None:intergenic 30.0%
ATTAGTAATGCACCCATAAA+AGG + tig0023706:2003-2022 None:intergenic 30.0%
ATTAGGATTCTCATATGACT+GGG - tig0023706:2043-2062 Msa1410770:CDS 30.0%
TGAGTCCATTTGTAATATTC+AGG + tig0023706:2092-2111 None:intergenic 30.0%
!! TTTCTACAGCTTTTAAAGAG+AGG - tig0023706:2119-2138 Msa1410770:CDS 30.0%
CCATAAGAACATCAATACTT+AGG + tig0023706:2206-2225 None:intergenic 30.0%
!! CCTAAGTATTGATGTTCTTA+TGG - tig0023706:2203-2222 Msa1410770:CDS 30.0%
! CATTGTTGAGATGAAGCATT+TGG + tig0023706:95-114 None:intergenic 35.0%
GAAGATGTTGTTCTTCTGAA+TGG + tig0023706:204-223 None:intergenic 35.0%
CAGTTGTAGAATCAGAAACT+CGG - tig0023706:254-273 Msa1410770:CDS 35.0%
AAAGGATAAGCTCTGTTAAC+AGG + tig0023706:321-340 None:intergenic 35.0%
! GATGTATCGATATCATCATC+TGG + tig0023706:402-421 None:intergenic 35.0%
CAATTGAAAACCTAGGGTAA+GGG + tig0023706:455-474 None:intergenic 35.0%
TCAATTGAAAACCTAGGGTA+AGG + tig0023706:456-475 None:intergenic 35.0%
TGAATAGCATATTGTTCTGC+AGG + tig0023706:679-698 None:intergenic 35.0%
TGCAGAACAATATGCTATTC+AGG - tig0023706:678-697 Msa1410770:intron 35.0%
! TCAGGTAAACTGGTAATGAA+AGG - tig0023706:1047-1066 Msa1410770:intron 35.0%
! ACTAGCTTGAAAAAAGCCAA+GGG - tig0023706:1643-1662 Msa1410770:intron 35.0%
! AAATAATTGAGTTGTGGCGT+TGG - tig0023706:1740-1759 Msa1410770:intron 35.0%
GTAAATACATATCAGAGCCA+TGG + tig0023706:1965-1984 None:intergenic 35.0%
CATTAGGATTCTCATATGAC+TGG - tig0023706:2042-2061 Msa1410770:CDS 35.0%
!! ACAGCTTTTAAAGAGAGGAT+TGG - tig0023706:2124-2143 Msa1410770:CDS 35.0%
! CATTGTTGAGATGAAGCATT+TGG + tig0023706:95-114 None:intergenic 35.0%
GAAGATGTTGTTCTTCTGAA+TGG + tig0023706:204-223 None:intergenic 35.0%
CAGTTGTAGAATCAGAAACT+CGG - tig0023706:254-273 Msa1410770:CDS 35.0%
AAAGGATAAGCTCTGTTAAC+AGG + tig0023706:321-340 None:intergenic 35.0%
! GATGTATCGATATCATCATC+TGG + tig0023706:402-421 None:intergenic 35.0%
CAATTGAAAACCTAGGGTAA+GGG + tig0023706:455-474 None:intergenic 35.0%
TCAATTGAAAACCTAGGGTA+AGG + tig0023706:456-475 None:intergenic 35.0%
TGAATAGCATATTGTTCTGC+AGG + tig0023706:679-698 None:intergenic 35.0%
TGCAGAACAATATGCTATTC+AGG - tig0023706:678-697 Msa1410770:intron 35.0%
! TCAGGTAAACTGGTAATGAA+AGG - tig0023706:1047-1066 Msa1410770:intron 35.0%
! ACTAGCTTGAAAAAAGCCAA+GGG - tig0023706:1643-1662 Msa1410770:intron 35.0%
! AAATAATTGAGTTGTGGCGT+TGG - tig0023706:1740-1759 Msa1410770:intron 35.0%
GTAAATACATATCAGAGCCA+TGG + tig0023706:1965-1984 None:intergenic 35.0%
CATTAGGATTCTCATATGAC+TGG - tig0023706:2042-2061 Msa1410770:CDS 35.0%
!! ACAGCTTTTAAAGAGAGGAT+TGG - tig0023706:2124-2143 Msa1410770:CDS 35.0%
! AAGAGTGTGATGAGAGGAAT+TGG + tig0023706:119-138 None:intergenic 40.0%
GTTGTTCTTCTGAATGGTGT+GGG + tig0023706:198-217 None:intergenic 40.0%
TGTTGTTCTTCTGAATGGTG+TGG + tig0023706:199-218 None:intergenic 40.0%
TTGGGCTCAATTTCATGGAA+AGG + tig0023706:339-358 None:intergenic 40.0%
! ATTTTTGTTGCAGTGGAGCT+GGG - tig0023706:542-561 Msa1410770:intron 40.0%
TTACATGTTGGACATCCACT+TGG - tig0023706:565-584 Msa1410770:intron 40.0%
GCTAGGTTTAAACGAATGCA+AGG - tig0023706:610-629 Msa1410770:intron 40.0%
CTACATAGCATGTCAGTGAT+AGG + tig0023706:721-740 None:intergenic 40.0%
ATTGAAGAAGACGTGTACAC+TGG - tig0023706:755-774 Msa1410770:intron 40.0%
GACACATGTCAGATAGTGTA+TGG - tig0023706:777-796 Msa1410770:intron 40.0%
!! TATTGGCTTTGTGTTCAGAC+AGG - tig0023706:976-995 Msa1410770:intron 40.0%
GCGATTAATATTGGTCACAG+TGG + tig0023706:1019-1038 None:intergenic 40.0%
GCTTTACTTCTCAGGTAAAC+TGG - tig0023706:1037-1056 Msa1410770:intron 40.0%
! ATTTGCTGCCTATATTGTGC+CGG - tig0023706:1168-1187 Msa1410770:intron 40.0%
GTTCATTACCGGCACAATAT+AGG + tig0023706:1179-1198 None:intergenic 40.0%
! GGTAGAAGAATATTGACTGC+AGG - tig0023706:1602-1621 Msa1410770:intron 40.0%
!!! GGCTTTTTTCAAGCTAGTCA+AGG + tig0023706:1641-1660 None:intergenic 40.0%
!! GACTAGCTTGAAAAAAGCCA+AGG - tig0023706:1642-1661 Msa1410770:intron 40.0%
TAAGTGAGATTTCTGTCCCT+TGG + tig0023706:1662-1681 None:intergenic 40.0%
! AAAGAGAGGATTGGCATATC+AGG - tig0023706:2133-2152 Msa1410770:CDS 40.0%
AGGCTGAAGTTCCAGTTAAT+TGG - tig0023706:2253-2272 Msa1410770:CDS 40.0%
ACCATCAATAACCTCCTCAT+TGG + tig0023706:2304-2323 None:intergenic 40.0%
! AAGAGTGTGATGAGAGGAAT+TGG + tig0023706:119-138 None:intergenic 40.0%
GTTGTTCTTCTGAATGGTGT+GGG + tig0023706:198-217 None:intergenic 40.0%
TGTTGTTCTTCTGAATGGTG+TGG + tig0023706:199-218 None:intergenic 40.0%
TTGGGCTCAATTTCATGGAA+AGG + tig0023706:339-358 None:intergenic 40.0%
! ATTTTTGTTGCAGTGGAGCT+GGG - tig0023706:542-561 Msa1410770:intron 40.0%
TTACATGTTGGACATCCACT+TGG - tig0023706:565-584 Msa1410770:intron 40.0%
GCTAGGTTTAAACGAATGCA+AGG - tig0023706:610-629 Msa1410770:intron 40.0%
CTACATAGCATGTCAGTGAT+AGG + tig0023706:721-740 None:intergenic 40.0%
ATTGAAGAAGACGTGTACAC+TGG - tig0023706:755-774 Msa1410770:intron 40.0%
GACACATGTCAGATAGTGTA+TGG - tig0023706:777-796 Msa1410770:intron 40.0%
!! TATTGGCTTTGTGTTCAGAC+AGG - tig0023706:976-995 Msa1410770:intron 40.0%
GCGATTAATATTGGTCACAG+TGG + tig0023706:1019-1038 None:intergenic 40.0%
GCTTTACTTCTCAGGTAAAC+TGG - tig0023706:1037-1056 Msa1410770:intron 40.0%
! ATTTGCTGCCTATATTGTGC+CGG - tig0023706:1168-1187 Msa1410770:intron 40.0%
GTTCATTACCGGCACAATAT+AGG + tig0023706:1179-1198 None:intergenic 40.0%
! GGTAGAAGAATATTGACTGC+AGG - tig0023706:1602-1621 Msa1410770:intron 40.0%
!!! GGCTTTTTTCAAGCTAGTCA+AGG + tig0023706:1641-1660 None:intergenic 40.0%
!! GACTAGCTTGAAAAAAGCCA+AGG - tig0023706:1642-1661 Msa1410770:intron 40.0%
TAAGTGAGATTTCTGTCCCT+TGG + tig0023706:1662-1681 None:intergenic 40.0%
! AAAGAGAGGATTGGCATATC+AGG - tig0023706:2133-2152 Msa1410770:CDS 40.0%
AGGCTGAAGTTCCAGTTAAT+TGG - tig0023706:2253-2272 Msa1410770:CDS 40.0%
ACCATCAATAACCTCCTCAT+TGG + tig0023706:2304-2323 None:intergenic 40.0%
!! TGAATTTTGAGGAAGGGAGG+GGG + tig0023706:161-180 None:intergenic 45.0%
!! CTGAATTTTGAGGAAGGGAG+GGG + tig0023706:162-181 None:intergenic 45.0%
!! GCTGAATTTTGAGGAAGGGA+GGG + tig0023706:163-182 None:intergenic 45.0%
!! TGCTGAATTTTGAGGAAGGG+AGG + tig0023706:164-183 None:intergenic 45.0%
!! CGGTGCTGAATTTTGAGGAA+GGG + tig0023706:167-186 None:intergenic 45.0%
!! ACGGTGCTGAATTTTGAGGA+AGG + tig0023706:168-187 None:intergenic 45.0%
!! AGGAACGGTGCTGAATTTTG+AGG + tig0023706:172-191 None:intergenic 45.0%
GAATGGTGTGGGAAAAGGAA+CGG + tig0023706:187-206 None:intergenic 45.0%
CTTCTGAATGGTGTGGGAAA+AGG + tig0023706:192-211 None:intergenic 45.0%
TACAACTGTGACTGTGACTG+CGG + tig0023706:242-261 None:intergenic 45.0%
TCCATGAAATTGAGCCCAAG+TGG - tig0023706:340-359 Msa1410770:intron 45.0%
CAGCTCCACTGCAACAAAAA+TGG + tig0023706:543-562 None:intergenic 45.0%
! CATTTTTGTTGCAGTGGAGC+TGG - tig0023706:541-560 Msa1410770:intron 45.0%
! CTGCGACTGATATTCTAGCT+AGG - tig0023706:593-612 Msa1410770:intron 45.0%
ATGTGTTGCATCCAATGGGT+TGG - tig0023706:638-657 Msa1410770:intron 45.0%
! TGTGTTGCATCCAATGGGTT+GGG - tig0023706:639-658 Msa1410770:intron 45.0%
TGGGCGCATAAGTTCATTAC+CGG + tig0023706:1190-1209 None:intergenic 45.0%
AAATATACAGGGGTCTGCTC+TGG + tig0023706:1555-1574 None:intergenic 45.0%
ATTGACTGCAGGACCAAGTT+TGG - tig0023706:1613-1632 Msa1410770:intron 45.0%
GCTAGTCAAGGAACCAAACT+TGG + tig0023706:1629-1648 None:intergenic 45.0%
!! GGCTACTTTGAAGCTTATCC+AGG + tig0023706:1769-1788 None:intergenic 45.0%
AGCATAGGCTTACAGCTTAC+TGG + tig0023706:1790-1809 None:intergenic 45.0%
ATGGGAAGCAAATCAAGTGG+AGG + tig0023706:1946-1965 None:intergenic 45.0%
!! TCCACTTGATTTGCTTCCCA+TGG - tig0023706:1945-1964 Msa1410770:CDS 45.0%
GCCAATGAGGAGGTTATTGA+TGG - tig0023706:2300-2319 Msa1410770:five_prime_UTR 45.0%
!! ATTGATGGTGTGAGTGAACG+CGG - tig0023706:2315-2334 Msa1410770:five_prime_UTR 45.0%
!! TGAATTTTGAGGAAGGGAGG+GGG + tig0023706:161-180 None:intergenic 45.0%
!! CTGAATTTTGAGGAAGGGAG+GGG + tig0023706:162-181 None:intergenic 45.0%
!! GCTGAATTTTGAGGAAGGGA+GGG + tig0023706:163-182 None:intergenic 45.0%
!! TGCTGAATTTTGAGGAAGGG+AGG + tig0023706:164-183 None:intergenic 45.0%
!! CGGTGCTGAATTTTGAGGAA+GGG + tig0023706:167-186 None:intergenic 45.0%
!! ACGGTGCTGAATTTTGAGGA+AGG + tig0023706:168-187 None:intergenic 45.0%
!! AGGAACGGTGCTGAATTTTG+AGG + tig0023706:172-191 None:intergenic 45.0%
GAATGGTGTGGGAAAAGGAA+CGG + tig0023706:187-206 None:intergenic 45.0%
CTTCTGAATGGTGTGGGAAA+AGG + tig0023706:192-211 None:intergenic 45.0%
TACAACTGTGACTGTGACTG+CGG + tig0023706:242-261 None:intergenic 45.0%
TCCATGAAATTGAGCCCAAG+TGG - tig0023706:340-359 Msa1410770:intron 45.0%
CAGCTCCACTGCAACAAAAA+TGG + tig0023706:543-562 None:intergenic 45.0%
! CATTTTTGTTGCAGTGGAGC+TGG - tig0023706:541-560 Msa1410770:intron 45.0%
! CTGCGACTGATATTCTAGCT+AGG - tig0023706:593-612 Msa1410770:intron 45.0%
ATGTGTTGCATCCAATGGGT+TGG - tig0023706:638-657 Msa1410770:intron 45.0%
! TGTGTTGCATCCAATGGGTT+GGG - tig0023706:639-658 Msa1410770:intron 45.0%
TGGGCGCATAAGTTCATTAC+CGG + tig0023706:1190-1209 None:intergenic 45.0%
AAATATACAGGGGTCTGCTC+TGG + tig0023706:1555-1574 None:intergenic 45.0%
ATTGACTGCAGGACCAAGTT+TGG - tig0023706:1613-1632 Msa1410770:intron 45.0%
GCTAGTCAAGGAACCAAACT+TGG + tig0023706:1629-1648 None:intergenic 45.0%
!! GGCTACTTTGAAGCTTATCC+AGG + tig0023706:1769-1788 None:intergenic 45.0%
AGCATAGGCTTACAGCTTAC+TGG + tig0023706:1790-1809 None:intergenic 45.0%
ATGGGAAGCAAATCAAGTGG+AGG + tig0023706:1946-1965 None:intergenic 45.0%
!! TCCACTTGATTTGCTTCCCA+TGG - tig0023706:1945-1964 Msa1410770:CDS 45.0%
GCCAATGAGGAGGTTATTGA+TGG - tig0023706:2300-2319 Msa1410770:five_prime_UTR 45.0%
!! ATTGATGGTGTGAGTGAACG+CGG - tig0023706:2315-2334 Msa1410770:five_prime_UTR 45.0%
! GAGGAGAAGAGTGTGATGAG+AGG + tig0023706:125-144 None:intergenic 50.0%
AGGGGGAATAATAGAGACGG+AGG + tig0023706:144-163 None:intergenic 50.0%
GGGAGGGGGAATAATAGAGA+CGG + tig0023706:147-166 None:intergenic 50.0%
GCCACTTGGGCTCAATTTCA+TGG + tig0023706:344-363 None:intergenic 50.0%
! TCCCAAAAACGCTGCCACTT+GGG + tig0023706:357-376 None:intergenic 50.0%
TCGACATGTTCCCTTACCCT+AGG - tig0023706:442-461 Msa1410770:intron 50.0%
AGTGGAGCTGGGTTACATGT+TGG - tig0023706:553-572 Msa1410770:intron 50.0%
TCAGTCGCAGTGTATCCAAG+TGG + tig0023706:583-602 None:intergenic 50.0%
!! CCAAAAGCATCCCAACCCAT+TGG + tig0023706:652-671 None:intergenic 50.0%
!!! CCAATGGGTTGGGATGCTTT+TGG - tig0023706:649-668 Msa1410770:intron 50.0%
TACCAGCATCCATGTGTCAG+TGG - tig0023706:865-884 Msa1410770:intron 50.0%
TGGTCACAGTGGTGAGCTTT+GGG + tig0023706:1008-1027 None:intergenic 50.0%
TTGGTCACAGTGGTGAGCTT+TGG + tig0023706:1009-1028 None:intergenic 50.0%
GCCATGGGAAGCAAATCAAG+TGG + tig0023706:1949-1968 None:intergenic 50.0%
! AGTGCAGGGCACCAATTAAC+TGG + tig0023706:2267-2286 None:intergenic 50.0%
! GTTAATTGGTGCCCTGCACT+TGG - tig0023706:2267-2286 Msa1410770:CDS 50.0%
! GAGGAGAAGAGTGTGATGAG+AGG + tig0023706:125-144 None:intergenic 50.0%
AGGGGGAATAATAGAGACGG+AGG + tig0023706:144-163 None:intergenic 50.0%
GGGAGGGGGAATAATAGAGA+CGG + tig0023706:147-166 None:intergenic 50.0%
GCCACTTGGGCTCAATTTCA+TGG + tig0023706:344-363 None:intergenic 50.0%
! TCCCAAAAACGCTGCCACTT+GGG + tig0023706:357-376 None:intergenic 50.0%
TCGACATGTTCCCTTACCCT+AGG - tig0023706:442-461 Msa1410770:intron 50.0%
AGTGGAGCTGGGTTACATGT+TGG - tig0023706:553-572 Msa1410770:intron 50.0%
TCAGTCGCAGTGTATCCAAG+TGG + tig0023706:583-602 None:intergenic 50.0%
!! CCAAAAGCATCCCAACCCAT+TGG + tig0023706:652-671 None:intergenic 50.0%
!!! CCAATGGGTTGGGATGCTTT+TGG - tig0023706:649-668 Msa1410770:intron 50.0%
TACCAGCATCCATGTGTCAG+TGG - tig0023706:865-884 Msa1410770:intron 50.0%
TGGTCACAGTGGTGAGCTTT+GGG + tig0023706:1008-1027 None:intergenic 50.0%
TTGGTCACAGTGGTGAGCTT+TGG + tig0023706:1009-1028 None:intergenic 50.0%
GCCATGGGAAGCAAATCAAG+TGG + tig0023706:1949-1968 None:intergenic 50.0%
! AGTGCAGGGCACCAATTAAC+TGG + tig0023706:2267-2286 None:intergenic 50.0%
! GTTAATTGGTGCCCTGCACT+TGG - tig0023706:2267-2286 Msa1410770:CDS 50.0%
! AGCCCAAGTGGCAGCGTTTT+TGG - tig0023706:352-371 Msa1410770:intron 55.0%
! GCCCAAGTGGCAGCGTTTTT+GGG - tig0023706:353-372 Msa1410770:intron 55.0%
GTCCCAAAAACGCTGCCACT+TGG + tig0023706:358-377 None:intergenic 55.0%
AGCCACTGACACATGGATGC+TGG + tig0023706:870-889 None:intergenic 55.0%
TCCATGTGTCAGTGGCTGTC+AGG - tig0023706:873-892 Msa1410770:intron 55.0%
ACCTGACAGCCACTGACACA+TGG + tig0023706:877-896 None:intergenic 55.0%
! ACAGGGGTCTGCTCTGGATT+TGG + tig0023706:1549-1568 None:intergenic 55.0%
!! GAGTTGTGGCGTTGGTTTCC+TGG - tig0023706:1748-1767 Msa1410770:intron 55.0%
! AGCCCAAGTGGCAGCGTTTT+TGG - tig0023706:352-371 Msa1410770:intron 55.0%
! GCCCAAGTGGCAGCGTTTTT+GGG - tig0023706:353-372 Msa1410770:intron 55.0%
GTCCCAAAAACGCTGCCACT+TGG + tig0023706:358-377 None:intergenic 55.0%
AGCCACTGACACATGGATGC+TGG + tig0023706:870-889 None:intergenic 55.0%
TCCATGTGTCAGTGGCTGTC+AGG - tig0023706:873-892 Msa1410770:intron 55.0%
ACCTGACAGCCACTGACACA+TGG + tig0023706:877-896 None:intergenic 55.0%
! ACAGGGGTCTGCTCTGGATT+TGG + tig0023706:1549-1568 None:intergenic 55.0%
!! GAGTTGTGGCGTTGGTTTCC+TGG - tig0023706:1748-1767 Msa1410770:intron 55.0%
! TTGGTGCCCTGCACTTGGCA+CGG - tig0023706:2272-2291 Msa1410770:CDS 60.0%
CCAACACCGTGCCAAGTGCA+GGG + tig0023706:2281-2300 None:intergenic 60.0%
!! TGGCACGGTGTTGGCCAATG+AGG - tig0023706:2287-2306 Msa1410770:exon 60.0%
!! CACGGTGTTGGCCAATGAGG+AGG - tig0023706:2290-2309 Msa1410770:exon 60.0%
GATGGTGTGAGTGAACGCGG+TGG - tig0023706:2318-2337 Msa1410770:five_prime_UTR 60.0%
! TTGGTGCCCTGCACTTGGCA+CGG - tig0023706:2272-2291 Msa1410770:CDS 60.0%
CCAACACCGTGCCAAGTGCA+GGG + tig0023706:2281-2300 None:intergenic 60.0%
!! TGGCACGGTGTTGGCCAATG+AGG - tig0023706:2287-2306 Msa1410770:exon 60.0%
!! CACGGTGTTGGCCAATGAGG+AGG - tig0023706:2290-2309 Msa1410770:exon 60.0%
GATGGTGTGAGTGAACGCGG+TGG - tig0023706:2318-2337 Msa1410770:five_prime_UTR 60.0%
CCCTGCACTTGGCACGGTGT+TGG - tig0023706:2278-2297 Msa1410770:exon 65.0%
GCCAACACCGTGCCAAGTGC+AGG + tig0023706:2282-2301 None:intergenic 65.0%
CCCTGCACTTGGCACGGTGT+TGG - tig0023706:2278-2297 Msa1410770:exon 65.0%
GCCAACACCGTGCCAAGTGC+AGG + tig0023706:2282-2301 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0023706 gene 31 2359 31 ID=Msa1410770;Name=Msa1410770
tig0023706 mRNA 31 2359 31 ID=Msa1410770-mRNA-1;Parent=Msa1410770;Name=Msa1410770-mRNA-1;_AED=0.03;_eAED=0.03;_QI=65|0.75|0.8|1|1|1|5|0|245
tig0023706 exon 31 135 31 ID=Msa1410770-mRNA-1:exon:26732;Parent=Msa1410770-mRNA-1
tig0023706 exon 236 355 236 ID=Msa1410770-mRNA-1:exon:26731;Parent=Msa1410770-mRNA-1
tig0023706 exon 1340 1396 1340 ID=Msa1410770-mRNA-1:exon:26730;Parent=Msa1410770-mRNA-1
tig0023706 exon 1751 1835 1751 ID=Msa1410770-mRNA-1:exon:26729;Parent=Msa1410770-mRNA-1
tig0023706 exon 1927 2359 1927 ID=Msa1410770-mRNA-1:exon:26728;Parent=Msa1410770-mRNA-1
tig0023706 five_prime_UTR 2295 2359 2295 ID=Msa1410770-mRNA-1:five_prime_utr;Parent=Msa1410770-mRNA-1
tig0023706 CDS 1927 2294 1927 ID=Msa1410770-mRNA-1:cds;Parent=Msa1410770-mRNA-1
tig0023706 CDS 1751 1835 1751 ID=Msa1410770-mRNA-1:cds;Parent=Msa1410770-mRNA-1
tig0023706 CDS 1340 1396 1340 ID=Msa1410770-mRNA-1:cds;Parent=Msa1410770-mRNA-1
tig0023706 CDS 236 355 236 ID=Msa1410770-mRNA-1:cds;Parent=Msa1410770-mRNA-1
tig0023706 CDS 31 135 31 ID=Msa1410770-mRNA-1:cds;Parent=Msa1410770-mRNA-1
Gene Sequence

>Msa1410770

ATGCTTCATCTCAACAATGTCCAATTCCTCTCATCACACTCTTCTCCTCCGTCTCTATTATTCCCCCTCCCTTCCTCAAAATTCAGCACCGTTCCTTTTCCCACACCATTCAGAAGAACAACATCTTCTTCTACTCTCAGATTCCGCAGTCACAGTCACAGTTGTAGAATCAGAAACTCGGCAACAAATGATAAACTGAACGAAACGGAGCAGAAGAAGAAGCCTGTTAACAGAGCTTATCCTTTCCATGAAATTGAGCCCAAGTGGCAGCGTTTTTGGGACGAATTTCGCACTTTCAGAACTCCAGATGATGATATCGATACATCAAAACCTAAATATTATATTCTCGACATGTTCCCTTACCCTAGTGGAGCTGGGTTACATGTTGGACATCCACTTGGATACACTGCGACTGATATTCTAGCTAGGTTTAAACGAATGCAAGGATATAATACAGGAACTCACCCAAAGCTCACCACTGTGACCAATATTAATCGCTTTACTTCTCAGTTGAAATCATTAGGATTCTCATATGACTGGGATCGTGAAATATCAACCATAGAACCTGAATATTACAAATGGACTCAATGGATCTTTCTACAGCTTTTAAAGAGAGGATTGGCATATCAGGCTGAAGTTCCAGTTAATTGGTGCCCTGCACTTGGCACGGTGTTGGCCAATGAGGAGGTTATTGATGGTGTGAGTGAACGCGGTGGTCATCCTGTAGTAAGAAAG

Protein sequence

>Msa1410770

MLHLNNVQFLSSHSSPPSLLFPLPSSKFSTVPFPTPFRRTTSSSTLRFRSHSHSCRIRNSATNDKLNETEQKKKPVNRAYPFHEIEPKWQRFWDEFRTFRTPDDDIDTSKPKYYILDMFPYPSGAGLHVGHPLGYTATDILARFKRMQGYNTGTHPKLTTVTNINRFTSQLKSLGFSYDWDREISTIEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVIDGVSERGGHPVVRK