AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0580360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580360 MtrunA17_Chr5g0398861 94.841 252 9 2 1 249 1 251 1.99e-172 474
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580360 AT1G62780.1 61.753 251 80 3 1 249 1 237 1.47e-105 305

Find 69 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTTATTATCACCATTTC+TGG 0.102111 4_1:+85420125 Msa0580360:three_prime_UTR
ATCCTTTGATGTCAAGATTT+TGG 0.138015 4_1:-85419538 None:intergenic
TTTCCTTCAACTTAAATAAA+TGG 0.193641 4_1:+85417833 Msa0580360:exon
ATGAGGTCTTGTGGAGTATC+AGG 0.256254 4_1:-85418702 None:intergenic
GTCCTATTGGTCCTGTTGAT+TGG 0.268287 4_1:+85417961 Msa0580360:CDS
GGCCGGCCTAGTACACCTTC+TGG 0.301594 4_1:-85418078 None:intergenic
CAAACCTGTTCCTTCTTGTA+TGG 0.344252 4_1:-85419084 None:intergenic
TCCTATTGGTCCTGTTGATT+GGG 0.352061 4_1:+85417962 Msa0580360:CDS
AGAAGTTTGAATGCTACTTC+TGG 0.364092 4_1:+85417885 Msa0580360:CDS
TTGGCATTAAAATCCGAGTT+AGG 0.370670 4_1:+85418905 Msa0580360:CDS
TGTATTGGTCCAGGTCCTAT+TGG 0.371658 4_1:+85417948 Msa0580360:CDS
CCTAGCAAGGTGGCCAGTAT+TGG 0.381900 4_1:-85418100 None:intergenic
CTAGCAAGGTGGCCAGTATT+GGG 0.384134 4_1:-85418099 None:intergenic
TAGCCATTTATTTAAGTTGA+AGG 0.385215 4_1:-85417836 None:intergenic
CCAATACTGGCCACCTTGCT+AGG 0.385665 4_1:+85418100 Msa0580360:CDS
GAACCAAATTCTCAATTAAC+AGG 0.392105 4_1:-85420308 None:intergenic
TACGACTATGTATCTTTAGT+TGG 0.395397 4_1:+85420245 Msa0580360:three_prime_UTR
GACGACGTTCTTTCTCTTCA+CGG 0.402885 4_1:-85418185 None:intergenic
GTACTAGGCCGGCCCAATAC+TGG 0.406350 4_1:+85418087 Msa0580360:CDS
GCCGGCCTAGTACACCTTCT+GGG 0.410951 4_1:-85418077 None:intergenic
ACCACCTTGCTTGCTTGCTA+TGG 0.420173 4_1:-85417788 None:intergenic
CTGAGCTTGCATCTTATCAT+AGG 0.423174 4_1:-85419490 None:intergenic
AGTTAAGTTACCCAATCAAC+AGG 0.425418 4_1:-85417972 None:intergenic
CGAGATTAATCGATCATTGT+TGG 0.431377 4_1:+85419691 Msa0580360:CDS
TAAATGGCTACGCTTAACTT+TGG 0.446560 4_1:+85417849 Msa0580360:exon
AAATCCACTATTGTGTGTAT+TGG 0.451283 4_1:+85417933 Msa0580360:CDS
TTCAATACAGTTGCTGGAGT+TGG 0.461932 4_1:+85419658 Msa0580360:intron
ACCCAATCAACAGGACCAAT+AGG 0.472506 4_1:-85417963 None:intergenic
CTTACTTGACACTGAGGCTC+AGG 0.483234 4_1:+85418731 Msa0580360:CDS
TGGACCAATACACACAATAG+TGG 0.498779 4_1:-85417937 None:intergenic
TGTATCTTTAGTTGGAAAGC+TGG 0.504899 4_1:+85420253 Msa0580360:three_prime_UTR
GAAGCAAGCTGCAGAATACA+TGG 0.509642 4_1:+85420039 Msa0580360:intron
TAGGACCCAGAAGGTGTACT+AGG 0.511032 4_1:+85418072 Msa0580360:intron
AAGGCCATACAAGAAGGAAC+AGG 0.513579 4_1:+85419080 Msa0580360:CDS
TTCACGGACTTGACGCTCAA+AGG 0.514787 4_1:-85418169 None:intergenic
ACTATTGTGTGTATTGGTCC+AGG 0.514965 4_1:+85417939 Msa0580360:CDS
GGAGGATAGATTGACTGAGC+TGG 0.528319 4_1:+85419046 Msa0580360:CDS
AAGTGCACATGGTGCCAACC+AGG 0.543322 4_1:+85419736 Msa0580360:CDS
CAAGGTGGCCAGTATTGGGC+CGG 0.546539 4_1:-85418095 None:intergenic
AGCATTCAAACTTCTTGTTG+TGG 0.561221 4_1:-85417877 None:intergenic
ACCCAGAAGGTGTACTAGGC+CGG 0.561282 4_1:+85418076 Msa0580360:CDS
AACCAAAATCTTGACATCAA+AGG 0.566416 4_1:+85419536 Msa0580360:CDS
AAGTATTCAATGAGGTCTTG+TGG 0.566777 4_1:-85418711 None:intergenic
AAATCGAAGCTGTCCTAACT+CGG 0.569095 4_1:-85418918 None:intergenic
AATACATGGAGAAGCTCCGT+GGG 0.575310 4_1:+85420053 Msa0580360:CDS
AGCTCAGCTCATAAAAGCCA+AGG 0.578424 4_1:+85419506 Msa0580360:CDS
TGAGGTCTTGTGGAGTATCA+GGG 0.585430 4_1:-85418701 None:intergenic
GTAACCATAGCAAGCAAGCA+AGG 0.586146 4_1:+85417784 Msa0580360:five_prime_UTR
TTTCGAAACTTATGGAGCAG+AGG 0.602773 4_1:+85417909 Msa0580360:CDS
TCTTAAACTCAAGCCTAGCA+AGG 0.605985 4_1:-85418113 None:intergenic
TTAGAGAAGGCCATACAAGA+AGG 0.624872 4_1:+85419074 Msa0580360:CDS
AAGTAAACTTACATCACGAA+GGG 0.626470 4_1:-85418211 None:intergenic
TCAACAGGACCAATAGGACC+TGG 0.627773 4_1:-85417957 None:intergenic
AAAGTAAACTTACATCACGA+AGG 0.630395 4_1:-85418212 None:intergenic
ATGATTTCTGCAGCTTACGG+AGG 0.630425 4_1:+85419028 Msa0580360:intron
ATATTTGATACAATTATCGA+CGG 0.631236 4_1:-85420157 None:intergenic
TGAGCTGGAGGCTTTAGAGA+AGG 0.633356 4_1:+85419061 Msa0580360:CDS
ATTTGCTGTTAACAAAACGC+AGG 0.637369 4_1:+85418937 Msa0580360:CDS
GGATAGATTGACTGAGCTGG+AGG 0.664651 4_1:+85419049 Msa0580360:CDS
GAATACATGGAGAAGCTCCG+TGG 0.672335 4_1:+85420052 Msa0580360:CDS
AGATTGCAAGAATGAGACCA+CGG 0.675769 4_1:+85418766 Msa0580360:CDS
TGTCAAGTAAGTATTCAATG+AGG 0.689411 4_1:-85418719 None:intergenic
TGTATTTGAGAACAGCCCCA+CGG 0.699113 4_1:-85420069 None:intergenic
GAAAACATATCAAGTGCACA+TGG 0.703604 4_1:+85419725 Msa0580360:CDS
TAAACTCAAGCCTAGCAAGG+TGG 0.709876 4_1:-85418110 None:intergenic
TGAATACTTACTTGACACTG+AGG 0.714178 4_1:+85418725 Msa0580360:CDS
TGATTGATGTAGGACCCAGA+AGG 0.731704 4_1:+85418063 Msa0580360:intron
ACCATAGCAAGCAAGCAAGG+TGG 0.741666 4_1:+85417787 Msa0580360:five_prime_UTR
ATACATGGAGAAGCTCCGTG+GGG 0.765327 4_1:+85420054 Msa0580360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATTTAGAGATTAAAT+TGG + chr4_1:85418543-85418562 Msa0580360:intron 10.0%
!! TTGATATATTAATAATTTGA+AGG + chr4_1:85419318-85419337 Msa0580360:intron 10.0%
!!! TTCTTTATAGTTGATATTAT+CGG + chr4_1:85419595-85419614 Msa0580360:intron 15.0%
!! TTTCCTTCAACTTAAATAAA+TGG + chr4_1:85417833-85417852 Msa0580360:exon 20.0%
!!! ATTTTCAATCAATAAAGAGT+TGG - chr4_1:85418029-85418048 None:intergenic 20.0%
!!! GATTAGAGTAATAATCATTT+TGG - chr4_1:85418461-85418480 None:intergenic 20.0%
!!! TAGCCTTTATTATTTTATGA+CGG + chr4_1:85418631-85418650 Msa0580360:intron 20.0%
!! ACTAAGCAAATGAAAAATAA+CGG - chr4_1:85418671-85418690 None:intergenic 20.0%
!! CACTAGAATAATTTATTCAA+TGG - chr4_1:85418989-85419008 None:intergenic 20.0%
!! TACAATTTCATGAACTAAAT+TGG - chr4_1:85419139-85419158 None:intergenic 20.0%
!!! AATTTAGTTCATGAAATTGT+AGG + chr4_1:85419138-85419157 Msa0580360:intron 20.0%
!!! ATTTAGTTCATGAAATTGTA+GGG + chr4_1:85419139-85419158 Msa0580360:intron 20.0%
!!! GTGAAATTTTGTTAATTTCA+AGG - chr4_1:85419180-85419199 None:intergenic 20.0%
!!! AACTTTTATGTTTCTAGTTT+CGG - chr4_1:85419906-85419925 None:intergenic 20.0%
!! ATATTTGATACAATTATCGA+CGG - chr4_1:85420160-85420179 None:intergenic 20.0%
!!! TAGCCATTTATTTAAGTTGA+AGG - chr4_1:85417839-85417858 None:intergenic 25.0%
! ATTGATTGATTGATTGATGT+AGG + chr4_1:85418053-85418072 Msa0580360:intron 25.0%
!! GTGTGTTTTCTTAGTAATTT+TGG + chr4_1:85418314-85418333 Msa0580360:intron 25.0%
! TTTGATACTTTCAAAGACTA+TGG + chr4_1:85418410-85418429 Msa0580360:intron 25.0%
! ATTTAGAGATTAAATTGGAG+AGG + chr4_1:85418548-85418567 Msa0580360:intron 25.0%
! TTTAGAGATTAAATTGGAGA+GGG + chr4_1:85418549-85418568 Msa0580360:intron 25.0%
! GAACCGTCATAAAATAATAA+AGG - chr4_1:85418637-85418656 None:intergenic 25.0%
!! ATTAAACGACGAATTCTTTT+TGG + chr4_1:85418886-85418905 Msa0580360:CDS 25.0%
! GAATAAATTATTCTAGTGTC+TGG + chr4_1:85418991-85419010 Msa0580360:intron 25.0%
! CAGAAATCATCATTGTAAAA+AGG - chr4_1:85419018-85419037 None:intergenic 25.0%
! TTAATATATCAAAACAGTCC+TGG - chr4_1:85419310-85419329 None:intergenic 25.0%
!! CATTCAATTGATATTTTACC+TGG - chr4_1:85419757-85419776 None:intergenic 25.0%
! AATGAGTTAAAGATTATAGC+TGG - chr4_1:85419850-85419869 None:intergenic 25.0%
! CATGTTCAGTAAATTAAATC+TGG - chr4_1:85419937-85419956 None:intergenic 25.0%
!! CAGATTTAATTTACTGAACA+TGG + chr4_1:85419935-85419954 Msa0580360:intron 25.0%
! TACTTTATTATCACCATTTC+TGG + chr4_1:85420125-85420144 Msa0580360:three_prime_UTR 25.0%
AAATCCACTATTGTGTGTAT+TGG + chr4_1:85417933-85417952 Msa0580360:CDS 30.0%
AAGTAAACTTACATCACGAA+GGG - chr4_1:85418214-85418233 None:intergenic 30.0%
AAAGTAAACTTACATCACGA+AGG - chr4_1:85418215-85418234 None:intergenic 30.0%
! TTTTGGTCTCTAAATATTCG+AGG - chr4_1:85418444-85418463 None:intergenic 30.0%
!!! GAAAACTTGTCATTTTAGCA+TGG - chr4_1:85418523-85418542 None:intergenic 30.0%
TGTCAAGTAAGTATTCAATG+AGG - chr4_1:85418722-85418741 None:intergenic 30.0%
CAAAATTTCACAATGATCTC+CGG + chr4_1:85419189-85419208 Msa0580360:intron 30.0%
! TGATTGAGAATTTTCGAATC+CGG - chr4_1:85419211-85419230 None:intergenic 30.0%
! ATCAGTGATTTTCAATATCC+AGG + chr4_1:85419289-85419308 Msa0580360:intron 30.0%
AATTGATCAAATCGCCAATT+TGG - chr4_1:85419376-85419395 None:intergenic 30.0%
AAATTGGCGATTTGATCAAT+TGG + chr4_1:85419375-85419394 Msa0580360:intron 30.0%
!!! TTGATGTCAAGATTTTGGTT+AGG - chr4_1:85419536-85419555 None:intergenic 30.0%
AACCAAAATCTTGACATCAA+AGG + chr4_1:85419536-85419555 Msa0580360:CDS 30.0%
! ATCCTTTGATGTCAAGATTT+TGG - chr4_1:85419541-85419560 None:intergenic 30.0%
! ACTTCTGTTCTAGTTAAACT+AGG + chr4_1:85419624-85419643 Msa0580360:intron 30.0%
TTTATCTTCAATACAGTTGC+TGG + chr4_1:85419652-85419671 Msa0580360:intron 30.0%
! TGATATGTTTTCATCGAGAA+GGG - chr4_1:85419717-85419736 None:intergenic 30.0%
! TTGATATGTTTTCATCGAGA+AGG - chr4_1:85419718-85419737 None:intergenic 30.0%
! CAATTGATATTTTACCTGGT+TGG - chr4_1:85419753-85419772 None:intergenic 30.0%
!!! GGAATTGTCAATTTTGAAAC+AGG + chr4_1:85419808-85419827 Msa0580360:intron 30.0%
TTTGAACATAACAGAACTTG+TGG + chr4_1:85419964-85419983 Msa0580360:intron 30.0%
TACGACTATGTATCTTTAGT+TGG + chr4_1:85420245-85420264 Msa0580360:three_prime_UTR 30.0%
TAAATGGCTACGCTTAACTT+TGG + chr4_1:85417849-85417868 Msa0580360:exon 35.0%
AGCATTCAAACTTCTTGTTG+TGG - chr4_1:85417880-85417899 None:intergenic 35.0%
! AGAAGTTTGAATGCTACTTC+TGG + chr4_1:85417885-85417904 Msa0580360:CDS 35.0%
!!! CTTCTGGTTTTCGAAACTTA+TGG + chr4_1:85417901-85417920 Msa0580360:CDS 35.0%
AGTTAAGTTACCCAATCAAC+AGG - chr4_1:85417975-85417994 None:intergenic 35.0%
!!! AACTTGTCATTTTAGCATGG+TGG - chr4_1:85418520-85418539 None:intergenic 35.0%
AAGTATTCAATGAGGTCTTG+TGG - chr4_1:85418714-85418733 None:intergenic 35.0%
TGAATACTTACTTGACACTG+AGG + chr4_1:85418725-85418744 Msa0580360:CDS 35.0%
TTGGCATTAAAATCCGAGTT+AGG + chr4_1:85418905-85418924 Msa0580360:CDS 35.0%
!! ATTTGCTGTTAACAAAACGC+AGG + chr4_1:85418937-85418956 Msa0580360:CDS 35.0%
! AGGTATCTGACTCTTTTTGT+TGG + chr4_1:85418957-85418976 Msa0580360:intron 35.0%
ATGATGATTTCTGCAGCTTA+CGG + chr4_1:85419025-85419044 Msa0580360:intron 35.0%
AAGGAACAGGTTTGTGAAAA+TGG + chr4_1:85419093-85419112 Msa0580360:intron 35.0%
AATTGGCGATTCACTCTATT+CGG - chr4_1:85419122-85419141 None:intergenic 35.0%
ATTTGGTCCTTGAAATGGTA+TGG - chr4_1:85419359-85419378 None:intergenic 35.0%
TACCATTTCAAGGACCAAAT+TGG + chr4_1:85419359-85419378 Msa0580360:intron 35.0%
!!! GATTTTGGTTAGGTTTTCCT+TGG - chr4_1:85419526-85419545 None:intergenic 35.0%
CGAGATTAATCGATCATTGT+TGG + chr4_1:85419691-85419710 Msa0580360:CDS 35.0%
GAAAACATATCAAGTGCACA+TGG + chr4_1:85419725-85419744 Msa0580360:CDS 35.0%
AGATTATAGCTGGATGATAC+TGG - chr4_1:85419840-85419859 None:intergenic 35.0%
!! AATATGCTGTGCTCTAAGAA+GGG - chr4_1:85419874-85419893 None:intergenic 35.0%
!! AAATATGCTGTGCTCTAAGA+AGG - chr4_1:85419875-85419894 None:intergenic 35.0%
TGTATCTTTAGTTGGAAAGC+TGG + chr4_1:85420253-85420272 Msa0580360:three_prime_UTR 35.0%
TTTCGAAACTTATGGAGCAG+AGG + chr4_1:85417909-85417928 Msa0580360:CDS 40.0%
TGGACCAATACACACAATAG+TGG - chr4_1:85417940-85417959 None:intergenic 40.0%
! ACTATTGTGTGTATTGGTCC+AGG + chr4_1:85417939-85417958 Msa0580360:CDS 40.0%
! TCCTATTGGTCCTGTTGATT+GGG + chr4_1:85417962-85417981 Msa0580360:CDS 40.0%
TCTTAAACTCAAGCCTAGCA+AGG - chr4_1:85418116-85418135 None:intergenic 40.0%
AGATTGCAAGAATGAGACCA+CGG + chr4_1:85418766-85418785 Msa0580360:CDS 40.0%
!! TTGAAAAGTACTACGAACCG+TGG - chr4_1:85418786-85418805 None:intergenic 40.0%
AAATCGAAGCTGTCCTAACT+CGG - chr4_1:85418921-85418940 None:intergenic 40.0%
TTAGAGAAGGCCATACAAGA+AGG + chr4_1:85419074-85419093 Msa0580360:CDS 40.0%
CAAACCTGTTCCTTCTTGTA+TGG - chr4_1:85419087-85419106 None:intergenic 40.0%
TTCATGAAATTGTAGGGTGC+TGG + chr4_1:85419145-85419164 Msa0580360:intron 40.0%
AGGCATCTGCATAAGCAAAT+GGG - chr4_1:85419473-85419492 None:intergenic 40.0%
TAGGCATCTGCATAAGCAAA+TGG - chr4_1:85419474-85419493 None:intergenic 40.0%
CTGAGCTTGCATCTTATCAT+AGG - chr4_1:85419493-85419512 None:intergenic 40.0%
TTCAATACAGTTGCTGGAGT+TGG + chr4_1:85419658-85419677 Msa0580360:intron 40.0%
TGATTACCAGAATCTGTGTG+TGG + chr4_1:85419787-85419806 Msa0580360:intron 40.0%
ACAATTCCACACACAGATTC+TGG - chr4_1:85419796-85419815 None:intergenic 40.0%
! ACGGCACAATTTTCCAGAAA+TGG - chr4_1:85420141-85420160 None:intergenic 40.0%
GTAACCATAGCAAGCAAGCA+AGG + chr4_1:85417784-85417803 Msa0580360:five_prime_UTR 45.0%
! TGTATTGGTCCAGGTCCTAT+TGG + chr4_1:85417948-85417967 Msa0580360:CDS 45.0%
GTCCTATTGGTCCTGTTGAT+TGG + chr4_1:85417961-85417980 Msa0580360:CDS 45.0%
ACCCAATCAACAGGACCAAT+AGG - chr4_1:85417966-85417985 None:intergenic 45.0%
TGATTGATGTAGGACCCAGA+AGG + chr4_1:85418063-85418082 Msa0580360:intron 45.0%
TAAACTCAAGCCTAGCAAGG+TGG - chr4_1:85418113-85418132 None:intergenic 45.0%
GACGACGTTCTTTCTCTTCA+CGG - chr4_1:85418188-85418207 None:intergenic 45.0%
! TGAGGTCTTGTGGAGTATCA+GGG - chr4_1:85418704-85418723 None:intergenic 45.0%
! ATGAGGTCTTGTGGAGTATC+AGG - chr4_1:85418705-85418724 None:intergenic 45.0%
ATGATTTCTGCAGCTTACGG+AGG + chr4_1:85419028-85419047 Msa0580360:intron 45.0%
AAGGCCATACAAGAAGGAAC+AGG + chr4_1:85419080-85419099 Msa0580360:CDS 45.0%
GTCGACACCATACCATTTCA+AGG + chr4_1:85419349-85419368 Msa0580360:intron 45.0%
CGCCAATTTGGTCCTTGAAA+TGG - chr4_1:85419364-85419383 None:intergenic 45.0%
ATGCAAGCTTACTCCTTGCT+CGG + chr4_1:85419442-85419461 Msa0580360:intron 45.0%
AGCTCAGCTCATAAAAGCCA+AGG + chr4_1:85419506-85419525 Msa0580360:CDS 45.0%
GAAGCAAGCTGCAGAATACA+TGG + chr4_1:85420039-85420058 Msa0580360:intron 45.0%
AATACATGGAGAAGCTCCGT+GGG + chr4_1:85420053-85420072 Msa0580360:CDS 45.0%
TGTATTTGAGAACAGCCCCA+CGG - chr4_1:85420072-85420091 None:intergenic 45.0%
ACCATAGCAAGCAAGCAAGG+TGG + chr4_1:85417787-85417806 Msa0580360:five_prime_UTR 50.0%
! ACCACCTTGCTTGCTTGCTA+TGG - chr4_1:85417791-85417810 None:intergenic 50.0%
TCAACAGGACCAATAGGACC+TGG - chr4_1:85417960-85417979 None:intergenic 50.0%
! TAGGACCCAGAAGGTGTACT+AGG + chr4_1:85418072-85418091 Msa0580360:intron 50.0%
CTAGCAAGGTGGCCAGTATT+GGG - chr4_1:85418102-85418121 None:intergenic 50.0%
TTCACGGACTTGACGCTCAA+AGG - chr4_1:85418172-85418191 None:intergenic 50.0%
! TTGGAGAGGGCGTGAAACTT+TGG + chr4_1:85418562-85418581 Msa0580360:intron 50.0%
CTTACTTGACACTGAGGCTC+AGG + chr4_1:85418731-85418750 Msa0580360:CDS 50.0%
GGAGGATAGATTGACTGAGC+TGG + chr4_1:85419046-85419065 Msa0580360:CDS 50.0%
GGATAGATTGACTGAGCTGG+AGG + chr4_1:85419049-85419068 Msa0580360:CDS 50.0%
!! TGAGCTGGAGGCTTTAGAGA+AGG + chr4_1:85419061-85419080 Msa0580360:CDS 50.0%
! TGCAGCTTGCTTCTGCAACA+AGG - chr4_1:85420032-85420051 None:intergenic 50.0%
GAATACATGGAGAAGCTCCG+TGG + chr4_1:85420052-85420071 Msa0580360:CDS 50.0%
ATACATGGAGAAGCTCCGTG+GGG + chr4_1:85420054-85420073 Msa0580360:CDS 50.0%
! ACCCAGAAGGTGTACTAGGC+CGG + chr4_1:85418076-85418095 Msa0580360:CDS 55.0%
CCTAGCAAGGTGGCCAGTAT+TGG - chr4_1:85418103-85418122 None:intergenic 55.0%
CCAATACTGGCCACCTTGCT+AGG + chr4_1:85418100-85418119 Msa0580360:CDS 55.0%
CAAATGGGAGCAACCGAGCA+AGG - chr4_1:85419458-85419477 None:intergenic 55.0%
! AAGTGCACATGGTGCCAACC+AGG + chr4_1:85419736-85419755 Msa0580360:CDS 55.0%
GCCGGCCTAGTACACCTTCT+GGG - chr4_1:85418080-85418099 None:intergenic 60.0%
GTACTAGGCCGGCCCAATAC+TGG + chr4_1:85418087-85418106 Msa0580360:CDS 60.0%
! CAAGGTGGCCAGTATTGGGC+CGG - chr4_1:85418098-85418117 None:intergenic 60.0%
GGCCGGCCTAGTACACCTTC+TGG - chr4_1:85418081-85418100 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 85417772 85420322 85417772 ID=Msa0580360;Name=Msa0580360
chr4_1 mRNA 85417772 85420322 85417772 ID=Msa0580360-mRNA-1;Parent=Msa0580360;Name=Msa0580360-mRNA-1;_AED=0.03;_eAED=0.03;_QI=80|1|1|1|1|1|8|220|249
chr4_1 exon 85417772 85417983 85417772 ID=Msa0580360-mRNA-1:exon:31398;Parent=Msa0580360-mRNA-1
chr4_1 exon 85418075 85418221 85418075 ID=Msa0580360-mRNA-1:exon:31399;Parent=Msa0580360-mRNA-1
chr4_1 exon 85418690 85418787 85418690 ID=Msa0580360-mRNA-1:exon:31400;Parent=Msa0580360-mRNA-1
chr4_1 exon 85418886 85418958 85418886 ID=Msa0580360-mRNA-1:exon:31401;Parent=Msa0580360-mRNA-1
chr4_1 exon 85419041 85419101 85419041 ID=Msa0580360-mRNA-1:exon:31402;Parent=Msa0580360-mRNA-1
chr4_1 exon 85419487 85419572 85419487 ID=Msa0580360-mRNA-1:exon:31403;Parent=Msa0580360-mRNA-1
chr4_1 exon 85419668 85419757 85419668 ID=Msa0580360-mRNA-1:exon:31404;Parent=Msa0580360-mRNA-1
chr4_1 exon 85420040 85420322 85420040 ID=Msa0580360-mRNA-1:exon:31405;Parent=Msa0580360-mRNA-1
chr4_1 five_prime_UTR 85417772 85417851 85417772 ID=Msa0580360-mRNA-1:five_prime_utr;Parent=Msa0580360-mRNA-1
chr4_1 CDS 85417852 85417983 85417852 ID=Msa0580360-mRNA-1:cds;Parent=Msa0580360-mRNA-1
chr4_1 CDS 85418075 85418221 85418075 ID=Msa0580360-mRNA-1:cds;Parent=Msa0580360-mRNA-1
chr4_1 CDS 85418690 85418787 85418690 ID=Msa0580360-mRNA-1:cds;Parent=Msa0580360-mRNA-1
chr4_1 CDS 85418886 85418958 85418886 ID=Msa0580360-mRNA-1:cds;Parent=Msa0580360-mRNA-1
chr4_1 CDS 85419041 85419101 85419041 ID=Msa0580360-mRNA-1:cds;Parent=Msa0580360-mRNA-1
chr4_1 CDS 85419487 85419572 85419487 ID=Msa0580360-mRNA-1:cds;Parent=Msa0580360-mRNA-1
chr4_1 CDS 85419668 85419757 85419668 ID=Msa0580360-mRNA-1:cds;Parent=Msa0580360-mRNA-1
chr4_1 CDS 85420040 85420102 85420040 ID=Msa0580360-mRNA-1:cds;Parent=Msa0580360-mRNA-1
chr4_1 three_prime_UTR 85420103 85420322 85420103 ID=Msa0580360-mRNA-1:three_prime_utr;Parent=Msa0580360-mRNA-1
Gene Sequence

>Msa0580360

ATGGCTACGCTTAACTTTGGCATAGCCACAACAAGAAGTTTGAATGCTACTTCTGGTTTTCGAAACTTATGGAGCAGAGGCAAATCCACTATTGTGTGTATTGGTCCAGGTCCTATTGGTCCTGTTGATTGGGACCCAGAAGGTGTACTAGGCCGGCCCAATACTGGCCACCTTGCTAGGCTTGAGTTTAAGAGACGTCTTGAGAAAGATTCTGAAGCTCGAGAAGCCTTTGAGCGTCAAGTCCGTGAAGAGAAAGAACGTCGTCGAGCCCTTCGTGATTCTCGTGATGTCCCTGATACTCCACAAGACCTCATTGAATACTTACTTGACACTGAGGCTCAGGAGATTGAATTTGAGATTGCAAGAATGAGACCACGATTAAACGACGAATTCTTTTTGGCATTAAAATCCGAGTTAGGACAGCTTCGATTTGCTGTTAACAAAACGCAGCTTACGGAGGATAGATTGACTGAGCTGGAGGCTTTAGAGAAGGCCATACAAGAAGGAACAGATGCCTATGATAAGATGCAAGCTCAGCTCATAAAAGCCAAGGAAAACCTAACCAAAATCTTGACATCAAAGGATGTCAAAGCAACTTTGCTGGAGTTGGTTGAGCGCAACGAGATTAATCGATCATTGTTGGCCCTTCTCGATGAAAACATATCAAGTGCACATGGTGCCAACCAGAAGCAAGCTGCAGAATACATGGAGAAGCTCCGTGGGGCTGTTCTCAAATACATTACAGTTTAG

Protein sequence

>Msa0580360

MATLNFGIATTRSLNATSGFRNLWSRGKSTIVCIGPGPIGPVDWDPEGVLGRPNTGHLARLEFKRRLEKDSEAREAFERQVREEKERRRALRDSRDVPDTPQDLIEYLLDTEAQEIEFEIARMRPRLNDEFFLALKSELGQLRFAVNKTQLTEDRLTELEALEKAIQEGTDAYDKMQAQLIKAKENLTKILTSKDVKATLLELVERNEINRSLLALLDENISSAHGANQKQAAEYMEKLRGAVLKYITV*