AlfalfaGEDB | Msa0514330

M. sativa cultivar zhongmu-4 / Msa0514330

KEGG: -
GO: GO:0003002 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009965 GO:0009966 GO:0009987 GO:0010016 GO:0010051 GO:0010305 GO:0010498 GO:0010646 GO:0010928 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0030163 GO:0031146 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048366 GO:0048367 GO:0048583 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0060776 GO:0065007 GO:0070647 GO:0071704 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905392
PFAM: PF13964.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0514330	XP_003601765.1	97.854	466	9	1	1	466	1	465	0.0	947

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0514330	sp\|Q9FZK1\|FBX6_ARATH	64.968	471	153	7	2	466	3	467	0.0	624

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0514330	G7JBG1	97.854	466	9	1	1	466	1	465	0.0	947

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004350	Msa0514330	-0.826976	2.018571e-54	-8.615850e-47
Msa0005690	Msa0514330	-0.803851	2.861436e-49	-8.615850e-47
Msa0006700	Msa0514330	-0.817502	3.190436e-52	-8.615850e-47
Msa0012780	Msa0514330	0.858999	5.601578e-63	-8.615850e-47
Msa0012820	Msa0514330	0.820370	7.110028e-53	-8.615850e-47
Msa0020630	Msa0514330	-0.833296	5.787136e-56	-8.615850e-47
Msa0030590	Msa0514330	-0.805199	1.497704e-49	-8.615850e-47
Msa0038350	Msa0514330	0.815558	8.695092e-52	-8.615850e-47
Msa0040550	Msa0514330	0.805618	1.223768e-49	-8.615850e-47
Msa0043240	Msa0514330	0.844074	9.467409e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0514330	MtrunA17_Chr3g0122401	97.854	466	9	1	1	466	1	465	0.0	947
Msa0514330	MtrunA17_Chr1g0161871	46.950	377	165	10	106	465	18	376	2.69e-107	323
Msa0514330	MtrunA17_Chr1g0161891	48.370	368	167	11	101	465	2	349	4.15e-107	322
Msa0514330	MtrunA17_Chr7g0220421	30.939	362	224	15	92	440	68	416	3.26e-34	133
Msa0514330	MtrunA17_Chr1g0150561	25.515	388	240	13	119	464	21	401	2.37e-30	121
Msa0514330	MtrunA17_Chr4g0052791	25.707	389	238	12	112	464	55	428	1.50e-25	108
Msa0514330	MtrunA17_Chr8g0377451	50.909	110	31	5	358	466	1	88	1.82e-23	94.0
Msa0514330	MtrunA17_Chr8g0347881	26.146	371	230	14	121	462	45	400	5.69e-23	100
Msa0514330	MtrunA17_Chr4g0003651	25.707	389	230	19	116	464	1	370	1.37e-22	99.0
Msa0514330	MtrunA17_Chr8g0347851	24.932	369	234	13	120	462	44	395	8.03e-20	91.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0514330	AT1G27340.1	64.968	471	153	7	2	466	3	467	0.0	624
Msa0514330	AT5G15710.1	28.043	460	283	15	1	443	1	429	7.79e-33	130
Msa0514330	AT5G15710.2	28.043	460	283	15	1	443	1	429	7.79e-33	130
Msa0514330	AT1G30950.1	26.446	363	225	10	112	441	42	395	5.77e-31	124
Msa0514330	AT4G33160.1	23.059	425	260	13	100	466	42	457	1.31e-24	106
Msa0514330	AT4G33160.2	23.059	425	260	13	100	466	103	518	2.09e-24	106
Msa0514330	AT5G43190.1	25.833	360	224	13	107	441	38	379	6.68e-18	85.9
Msa0514330	AT3G61590.2	36.364	121	73	3	120	238	51	169	4.29e-17	83.6
Msa0514330	AT3G61590.3	36.364	121	73	3	120	238	51	169	4.29e-17	83.6
Msa0514330	AT3G61590.1	36.364	121	73	3	120	238	43	161	4.31e-17	83.6

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Find 156 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAACTCCGTTTGCT+TGG	0.442190	3_4:+65011549	Msa0514330:five_prime_UTR
AAACCACGTTTCCAAGCAAA+CGG	0.536760	3_4:-65011560	None:intergenic
AAACGGCAGTGGATAGCATG+TGG	0.678505	3_4:+65015370	Msa0514330:CDS
AAAGAATGGCTGAAGGTTCC+TGG	0.339162	3_4:+65015325	Msa0514330:CDS
AAAGCTTTGAGAAGCCAGCA+AGG	0.612786	3_4:-65014474	None:intergenic
AAAGGTATTATAGGATAGCA+AGG	0.591838	3_4:-65015643	None:intergenic
AACCCCTGTTGCCATATCAT+AGG	0.480445	3_4:-65015005	None:intergenic
AAGAATGGCTGAAGGTTCCT+GGG	0.558151	3_4:+65015326	Msa0514330:CDS
AAGTCCAAGCACCATATATT+TGG	0.306854	3_4:-65015196	None:intergenic
AAGTCCCGCAAGAAAATCCA+TGG	0.594704	3_4:+65014513	Msa0514330:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATAGAAAGAGAAAGGAAAA+AGG	+	chr3_4:65011626-65011645	Msa0514330:five_prime_UTR	30.0%
ATTATTAGTAGAGGAAATCG+GGG	+	chr3_4:65011663-65011682	Msa0514330:five_prime_UTR	30.0%
AAATGATTCACCAAAACTAG+AGG	-	chr3_4:65011957-65011976	None:intergenic	30.0%
AAAAATATAAAATTGGGGGG+GGG	-	chr3_4:65012266-65012285	None:intergenic	30.0%
CAAAAATATAAAATTGGGGG+GGG	-	chr3_4:65012267-65012286	None:intergenic	30.0%
AAAATCAGGGAAAATGGAAT+TGG	+	chr3_4:65012373-65012392	Msa0514330:intron	30.0%
GCTTAACGACAAGAAAAAAA+AGG	-	chr3_4:65012481-65012500	None:intergenic	30.0%
TGAAATATTACCGCCAAATA+CGG	+	chr3_4:65012550-65012569	Msa0514330:intron	30.0%
TTGAATTGAGTATCATTTGC+GGG	+	chr3_4:65012605-65012624	Msa0514330:intron	30.0%
TCAACAAAAACAAAACAAGC+AGG	-	chr3_4:65012981-65013000	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	65011497	65015790	65011497	ID=Msa0514330;Name=Msa0514330
chr3_4	mRNA	65011497	65015790	65011497	ID=Msa0514330-mRNA-1;Parent=Msa0514330;Name=Msa0514330-mRNA-1;_AED=0.00;_eAED=0.00;_QI=207\|1\|1\|1\|1\|1\|2\|361\|466
chr3_4	exon	65011497	65011858	65011497	ID=Msa0514330-mRNA-1:exon:16450;Parent=Msa0514330-mRNA-1
chr3_4	exon	65014184	65015790	65014184	ID=Msa0514330-mRNA-1:exon:16451;Parent=Msa0514330-mRNA-1
chr3_4	five_prime_UTR	65011497	65011703	65011497	ID=Msa0514330-mRNA-1:five_prime_utr;Parent=Msa0514330-mRNA-1
chr3_4	CDS	65011704	65011858	65011704	ID=Msa0514330-mRNA-1:cds;Parent=Msa0514330-mRNA-1
chr3_4	CDS	65014184	65015429	65014184	ID=Msa0514330-mRNA-1:cds;Parent=Msa0514330-mRNA-1
chr3_4	three_prime_UTR	65015430	65015790	65015430	ID=Msa0514330-mRNA-1:three_prime_utr;Parent=Msa0514330-mRNA-1

Gene Sequence

>Msa0514330

ATGGAAGGGCTGGCCATGCTGAAGCAGCTCATCGGTCAGCTTCAGCAACTTCTCGACTCTCATCATCATTCTTCTTCTTCTTCTTCCATTCTTCAACAACAACAACAACAACAACCTTCTCATCAAACTATCTTCCTTCAACATCACCCTCCCAGATGGACCTCCTTTGACCTCGAAGATAGCTCTGTAGATGACTGTTGTGGCCTTGTAATGGCAGCTGGAAAGTCTCATAGTTTTAGGATGTCAGAGCCTCTGAAGCCTCCACCCGCTAAGAAGCCTCGAAGAGATCGAAGCAGGGGCAAATCATCAGGAAGATCCAGTACAAGTGAAGTTATGGAACAAGAAATATGGAAAGATTTTCCTGAAGATTTATTTGAGGCTGTAATTGCACGACTTCCCATTGCCGCGTTTTTCCGCTTCCGCTCTGTATGCCGTCAATGGAATTCCTTGCTGGCTTCTCAAAGCTTTTCTAAGCAATGTGCGGAAGTCCCGCAAGAAAATCCATGGTTTTACACCATAACTCATGAAAATGTGAATTCAGGAGCCATGTATGACCCTTCTTTGAAAAAGTGGCATCATCCGTCTATATCACCACTGCCCACAAAGTTGATTGTTTTGCCAGTGGCTTCTGCTGGGGGTTTAGTTTGCTTTCTTGACATTGGCCATCGTAACTTCTATGTATGTAACCCACTAACTCAATCCTTCAAGGAGTTGCCAGCTCGGTCAGTTAAGGTCTGGTCTCGCGTTGCTGTAGGGATGACAGTGAATGGAAATTCAATCAGTTCAGGCTACAAGATCCTATGGGTGGGTTGTGATGGAGAATATGAAGTTTATGACTCGGTGAAAAACTCTTGGAGTCGTCCAGGAAACATGCCTGGAAGTATGAACCTGCCATTGTCCCTTAACTTCAGGTCGCAAACTGTCTCTATTGACAGTACCCTATACTTCATGCGTTCAGATCCAGAAGGGGTTGTTTCCTATGATATGGCAACAGGGGTTTGGAAACAGTACATAATCCCAGCGCCACTACATTTGACTGACCACACTCTAGCTGAGTATGATGGTCAGATCATGCTTGTGGGCTTGCTCACAAAGAATGCAGCCACGTGTGTATGCATATGGGAGCTGCAGAGAATGACACTCTTGTGGAAGGAGGTAGACAGAATGCCAAATATATGGTGCTTGGACTTTTATGGTAAGCACGTCAGAATGACTTGCCTAGGGAACAAAGGCTTGCTCATGTTGTCCCTGAGATCGAAACAAATGAATCGGTTGGTTACTTACAACATAGCAAGGAAAGAATGGCTGAAGGTTCCTGGGTGTGTGGTGCCGAATGGGAAGAAACGGCAGTGGATAGCATGTGGTACTGCATTTCATCCATGCTTGACCGCGGTGGCTTGA

Protein sequence

>Msa0514330

MEGLAMLKQLIGQLQQLLDSHHHSSSSSSILQQQQQQQPSHQTIFLQHHPPRWTSFDLEDSSVDDCCGLVMAAGKSHSFRMSEPLKPPPAKKPRRDRSRGKSSGRSSTSEVMEQEIWKDFPEDLFEAVIARLPIAAFFRFRSVCRQWNSLLASQSFSKQCAEVPQENPWFYTITHENVNSGAMYDPSLKKWHHPSISPLPTKLIVLPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTVNGNSISSGYKILWVGCDGEYEVYDSVKNSWSRPGNMPGSMNLPLSLNFRSQTVSIDSTLYFMRSDPEGVVSYDMATGVWKQYIIPAPLHLTDHTLAEYDGQIMLVGLLTKNAATCVCIWELQRMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSKQMNRLVTYNIARKEWLKVPGCVVPNGKKRQWIACGTAFHPCLTAVA*