AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0757990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0757990 MtrunA17_Chr5g0404321 97.596 416 10 0 1 416 1 416 0.0 841
Msa0757990 MtrunA17_Chr8g0373001 74.519 416 102 2 1 416 1 412 0.0 649
Msa0757990 MtrunA17_Chr1g0155301 62.903 434 131 8 1 416 1 422 0.0 527
Msa0757990 MtrunA17_Chr8g0373361 58.111 413 151 9 1 409 11 405 1.97e-159 455
Msa0757990 MtrunA17_Chr2g0278511 55.069 434 170 12 1 416 1 427 1.07e-153 441
Msa0757990 MtrunA17_Chr2g0286441 57.182 369 151 3 48 416 32 393 1.57e-149 429
Msa0757990 MtrunA17_Chr1g0201891 53.182 440 173 12 1 416 1 431 6.26e-149 429
Msa0757990 MtrunA17_Chr1g0196071 52.871 418 179 7 1 416 1 402 3.18e-146 421
Msa0757990 MtrunA17_Chr8g0373331 51.090 413 129 9 1 407 1 346 8.66e-132 382
Msa0757990 MtrunA17_Chr2g0315641 50.829 362 146 2 55 416 42 371 2.35e-127 372
Msa0757990 MtrunA17_Chr2g0315651 44.772 373 167 6 48 416 30 367 4.20e-101 305
Msa0757990 MtrunA17_Chr8g0373351 45.663 392 95 11 37 413 3 291 9.75e-95 286
Msa0757990 MtrunA17_Chr1g0156151 51.982 227 101 2 1 223 1 223 3.32e-76 236
Msa0757990 MtrunA17_Chr8g0373341 53.333 225 59 6 1 207 1 197 1.16e-55 186
Msa0757990 MtrunA17_Chr8g0373341 55.556 117 51 1 291 406 204 320 4.43e-34 129
Msa0757990 MtrunA17_Chr3g0091401 71.134 97 22 1 98 194 9 99 2.84e-37 131
Msa0757990 MtrunA17_Chr2g0334041 36.697 109 54 4 313 415 260 359 1.55e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0757990 AT2G18280.2 63.876 418 124 7 1 416 1 393 0.0 518
Msa0757990 AT2G18280.1 63.876 418 124 7 1 416 1 393 0.0 518
Msa0757990 AT1G47270.3 58.333 396 131 9 32 416 16 388 9.58e-155 442
Msa0757990 AT1G47270.1 58.333 396 131 9 32 416 41 413 1.23e-154 443
Msa0757990 AT1G47270.2 58.333 396 131 9 32 416 40 412 1.40e-154 443
Msa0757990 AT1G25280.1 53.795 448 172 9 1 416 1 445 1.42e-153 442
Msa0757990 AT2G47900.3 53.589 418 181 5 1 416 1 407 6.76e-152 436
Msa0757990 AT2G47900.2 53.717 417 181 5 1 416 1 406 1.27e-151 436
Msa0757990 AT2G47900.1 53.717 417 181 5 1 416 1 406 1.27e-151 436
Msa0757990 AT1G76900.2 50.866 462 174 9 1 416 1 455 3.52e-145 421
Msa0757990 AT1G76900.1 50.866 462 174 9 1 416 1 455 3.52e-145 421
Msa0757990 AT1G76900.3 50.866 462 174 9 1 416 1 455 3.52e-145 421
Msa0757990 AT1G43640.1 50.000 442 182 12 1 416 1 429 1.51e-142 413
Msa0757990 AT5G18680.1 53.887 373 147 7 51 416 35 389 2.56e-130 380
Msa0757990 AT1G43640.2 52.151 372 147 9 67 416 1 363 1.84e-128 375
Msa0757990 AT3G06380.1 51.671 389 168 7 31 416 9 380 4.05e-128 375
Msa0757990 AT1G53320.1 51.934 362 148 3 55 416 44 379 1.60e-124 365
Msa0757990 AT5G18680.2 54.369 309 117 6 114 416 7 297 1.69e-105 314
Msa0757990 AT3G06380.2 54.153 301 119 6 118 416 5 288 2.10e-101 303
Msa0757990 AT1G25280.3 56.180 267 93 6 174 416 1 267 1.05e-94 285
Msa0757990 AT1G25280.2 56.180 267 93 6 174 416 1 267 1.05e-94 285
Msa0757990 AT1G61940.2 50.575 87 43 0 58 144 1 87 4.21e-26 106
Msa0757990 AT1G61940.1 54.098 61 28 0 58 118 1 61 6.01e-16 77.4

Find 145 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTGCTGGACCGGCTATT+TGG 0.209525 5_2:+13051146 None:intergenic
CCAATTGGATCTTTACCTTT+TGG 0.222216 5_2:+13050900 None:intergenic
CTGCCTCTGTTTCTTCGATT+TGG 0.246572 5_2:-13053738 Msa0757990:five_prime_UTR
TAACACGGCCCTTGAAATTT+AGG 0.254077 5_2:+13050763 None:intergenic
CCAGCAGGAGATTTCATTCT+AGG 0.267212 5_2:-13051133 Msa0757990:CDS
TGGAAAAGATATATTTACTA+TGG 0.274718 5_2:-13050637 Msa0757990:CDS
CACAGACTTCATCATATCTT+TGG 0.281729 5_2:-13051379 Msa0757990:CDS
TGTTGGTGGCGGACCCTCTT+CGG 0.290583 5_2:-13053826 Msa0757990:five_prime_UTR
CTAAAATTAAATTTAGTTGC+AGG 0.290792 5_2:+13050368 None:intergenic
ATCACCTGCTTTAACGAAAT+AGG 0.313540 5_2:+13052673 None:intergenic
TTGCAGCTGTTCATGCCATC+TGG 0.337933 5_2:+13050794 None:intergenic
ATCTTGCAGTTTGGAAAGAT+TGG 0.342353 5_2:-13050657 Msa0757990:CDS
CGTCAATCTTCCACACTCTT+CGG 0.347596 5_2:+13052699 None:intergenic
TTCAACCCTCGCAGAGTTGC+CGG 0.349688 5_2:-13050865 Msa0757990:CDS
GTCAATCTTCCACACTCTTC+GGG 0.352453 5_2:+13052700 None:intergenic
GAGAAGGTTATCTTGCAGTT+TGG 0.354935 5_2:-13050666 Msa0757990:CDS
TATACCTGTCTCAGCTGTTC+AGG 0.357164 5_2:-13051000 Msa0757990:CDS
GTTGGTGGCGGACCCTCTTC+GGG 0.370624 5_2:-13053825 Msa0757990:five_prime_UTR
TAGAAGAGACCGAGACTTCT+TGG 0.372683 5_2:-13052801 Msa0757990:CDS
TCTGCATATCTATTGTACTA+TGG 0.382229 5_2:-13052497 Msa0757990:CDS
ATGATGCAATTCATTCTTCT+CGG 0.382856 5_2:+13051029 None:intergenic
TTAGCTGATTTGTTCGTTTG+AGG 0.395892 5_2:-13053641 Msa0757990:five_prime_UTR
CGATTCATGCCACACCATTC+CGG 0.400750 5_2:-13053874 Msa0757990:five_prime_UTR
CCAAGGGCCATTTGAGTCTC+TGG 0.405945 5_2:-13050835 Msa0757990:CDS
TAAAGCTGTTAAGGAGATGA+AGG 0.412584 5_2:+13053778 None:intergenic
ATAACCTTCTCTTGCTCTGC+AGG 0.415381 5_2:+13050678 None:intergenic
GAAATACAAGGCAACTATAT+AGG 0.419249 5_2:+13050316 None:intergenic
CTCATAACATAAACATAGGT+TGG 0.424399 5_2:-13053900 Msa0757990:five_prime_UTR
ATGCTGGTGCCTAAATTTCA+AGG 0.430024 5_2:-13050772 Msa0757990:CDS
TGAGGAAAAGATGTAGGAGT+TGG 0.437219 5_2:+13050963 None:intergenic
ACCTATTCAGCAGGGACAAT+GGG 0.444059 5_2:-13052866 Msa0757990:CDS
AATACTAACGACCGATTGTC+AGG 0.447228 5_2:+13050443 None:intergenic
AGTGATGTTAGAGTGATATC+AGG 0.447610 5_2:+13052892 None:intergenic
ATGCCACACCATTCCGGTTG+CGG 0.449706 5_2:-13053868 Msa0757990:five_prime_UTR
GAATTGCTTAAATCTCCAAT+TGG 0.451744 5_2:+13050885 None:intergenic
TGGAGGTTGGCTGTCATATA+TGG 0.452519 5_2:+13051187 None:intergenic
GAAGGAGGCGTTGAAAATTC+CGG 0.455460 5_2:+13053796 None:intergenic
CTCCGATACAGTGCTTCATC+AGG 0.459633 5_2:-13052535 Msa0757990:CDS
GCCCATTGTCCCTGCTGAAT+AGG 0.468212 5_2:+13052865 None:intergenic
CCAAAAGGTAAAGATCCAAT+TGG 0.470093 5_2:-13050900 Msa0757990:CDS
TAAAATTAAATTTAGTTGCA+GGG 0.470751 5_2:+13050369 None:intergenic
ATCACTTGAACCTATTCAGC+AGG 0.471218 5_2:-13052875 Msa0757990:CDS
TAGTTACACGCTGGAACTCT+TGG 0.471948 5_2:+13051101 None:intergenic
AGCCAACCTCCACACGGAGC+TGG 0.473234 5_2:-13051176 Msa0757990:CDS
GGCATGAACAGCTGCAATGC+TGG 0.474704 5_2:-13050788 Msa0757990:CDS
AATGAAATCTCCTGCTGGAC+CGG 0.476146 5_2:+13051138 None:intergenic
GCGGAGAACATTCAGCTCAT+AGG 0.477645 5_2:+13051061 None:intergenic
CTTGTATTTCTCACCACACA+TGG 0.480634 5_2:-13050303 Msa0757990:three_prime_UTR
CGGAATGGTGTGGCATGAAT+CGG 0.481540 5_2:+13053875 None:intergenic
AACTCAAGGAGATGAGGGAT+GGG 0.484739 5_2:-13052984 Msa0757990:CDS
CTGAATGTTCTCCGCACTAG+AGG 0.484848 5_2:-13051053 Msa0757990:CDS
CGTTCCAGCAATGCGTATGT+TGG 0.488866 5_2:-13051339 Msa0757990:CDS
AACCAAATAGCCGGTCCAGC+AGG 0.493265 5_2:-13051148 Msa0757990:CDS
TTTACTCATAACATAAACAT+AGG 0.496397 5_2:-13053904 Msa0757990:five_prime_UTR
AATGGCCCTTGGCTCTGAAC+CGG 0.498889 5_2:+13050846 None:intergenic
GATGTTTGCAGTTATTGTGC+TGG 0.500034 5_2:-13053058 Msa0757990:intron
GTAATTTGAGGAAAAGATGT+AGG 0.503684 5_2:+13050957 None:intergenic
GAACTCAAGGAGATGAGGGA+TGG 0.505860 5_2:-13052985 Msa0757990:CDS
TGCAGCTGTTCATGCCATCT+GGG 0.506117 5_2:+13050795 None:intergenic
GTTTCCTATTTCGTTAAAGC+AGG 0.506221 5_2:-13052677 Msa0757990:intron
AAACCAGCGGACTATAACCA+TGG 0.507514 5_2:+13050531 None:intergenic
TTTCACGGCGGTGTTGGTGG+CGG 0.510082 5_2:-13053837 Msa0757990:five_prime_UTR
CCTTCCTGAACAGCTGAGAC+AGG 0.514005 5_2:+13050996 None:intergenic
GAGTTGCCGGTTCAGAGCCA+AGG 0.518280 5_2:-13050852 Msa0757990:CDS
CAGGAGATTTCATTCTAGGC+AGG 0.528326 5_2:-13051129 Msa0757990:CDS
CATGGATCTCATTCACATGC+TGG 0.528401 5_2:+13050549 None:intergenic
TTGAGTACCAGAGACTCAAA+TGG 0.530012 5_2:+13050828 None:intergenic
AGTTAAGAACTTTCAACTTG+TGG 0.534362 5_2:-13050730 Msa0757990:CDS
GTGAGATGCAGCCTGACAAT+CGG 0.535093 5_2:-13050454 Msa0757990:three_prime_UTR
GAAACGACAACAGCACGTGC+AGG 0.536741 5_2:+13052778 None:intergenic
CCTAGAATGAAATCTCCTGC+TGG 0.538624 5_2:+13051133 None:intergenic
AAATGCTCATCAGTAATTTG+AGG 0.539761 5_2:+13050945 None:intergenic
CCTGTCTCAGCTGTTCAGGA+AGG 0.540458 5_2:-13050996 Msa0757990:CDS
TGTCGTTGAGAAGCATAGTA+CGG 0.541748 5_2:-13053008 Msa0757990:CDS
CTGTCTCAGCTGTTCAGGAA+GGG 0.541956 5_2:-13050995 Msa0757990:CDS
CGAGGAGAGGTGTGGCAAGT+AGG 0.542255 5_2:-13052948 Msa0757990:CDS
GCATATCGCAAAGGCTTGGA+AGG 0.543599 5_2:+13050593 None:intergenic
GCTGTCATATATGGTGAACT+TGG 0.544644 5_2:+13051196 None:intergenic
GTGCTTCTGTGTGTAAATCA+TGG 0.549837 5_2:-13052753 Msa0757990:CDS
CCAGAGACTCAAATGGCCCT+TGG 0.550663 5_2:+13050835 None:intergenic
TTCCAGCTCCGTGTGGAGGT+TGG 0.551308 5_2:+13051174 None:intergenic
AACCTATTCAGCAGGGACAA+TGG 0.551680 5_2:-13052867 Msa0757990:CDS
ACGTGCAGGCCAAGAAGTCT+CGG 0.554427 5_2:+13052792 None:intergenic
AAGCATAGTACGGGAACTCA+AGG 0.555180 5_2:-13052998 Msa0757990:CDS
TCTGAACCGGCAACTCTGCG+AGG 0.556736 5_2:+13050859 None:intergenic
AAGGAGATGAGGGATGGGAT+TGG 0.557067 5_2:-13052979 Msa0757990:CDS
GATCCATGGTTATAGTCCGC+TGG 0.557580 5_2:-13050534 Msa0757990:three_prime_UTR
TGCTACTTGATATAATTCGA+AGG 0.558581 5_2:-13052825 Msa0757990:CDS
TGTCTCAGCTGTTCAGGAAG+GGG 0.560697 5_2:-13050994 Msa0757990:CDS
ATCGGAGAATCACGAGGACC+CGG 0.561657 5_2:+13052551 None:intergenic
CTCCTGATGAAGCACTGTAT+CGG 0.562380 5_2:+13052533 None:intergenic
TTCTTCTCGGCCCTCTAGTG+CGG 0.564773 5_2:+13051042 None:intergenic
AATGGATTCCGCAACCGGAA+TGG 0.565534 5_2:+13053860 None:intergenic
GTCTCAGCTGTTCAGGAAGG+GGG 0.566290 5_2:-13050993 Msa0757990:CDS
CTGAACCGGCAACTCTGCGA+GGG 0.569008 5_2:+13050860 None:intergenic
GTCGTTGAGAAGCATAGTAC+GGG 0.569276 5_2:-13053007 Msa0757990:CDS
ATATCTATTGTACTATGGAC+TGG 0.572719 5_2:-13052492 Msa0757990:CDS
AGGGCTATAGAATGACATAC+AGG 0.575549 5_2:+13050388 None:intergenic
GCTACTTGATATAATTCGAA+GGG 0.575810 5_2:-13052824 Msa0757990:CDS
GCGTCAGCACCAGAGCCAAA+AGG 0.578551 5_2:-13050915 Msa0757990:CDS
TCAAGCATATCGCAAAGGCT+TGG 0.579509 5_2:+13050589 None:intergenic
AACATTCAGCTCATAGGCAA+TGG 0.582469 5_2:+13051067 None:intergenic
CTGGAATACAACCAAATAGC+CGG 0.589720 5_2:-13051157 Msa0757990:CDS
CGATACAGTGCTTCATCAGG+AGG 0.590035 5_2:-13052532 Msa0757990:CDS
TTATGCACAATTCTTCAGCA+TGG 0.590762 5_2:-13050476 Msa0757990:three_prime_UTR
TACGGGAACTCAAGGAGATG+AGG 0.591073 5_2:-13052990 Msa0757990:CDS
CTGAACAATCTCTTGTGTAA+CGG 0.594307 5_2:+13052726 None:intergenic
ACGGGAACTCAAGGAGATGA+GGG 0.594362 5_2:-13052989 Msa0757990:CDS
TTCTCCTGCAGAGCAAGAGA+AGG 0.597006 5_2:-13050682 Msa0757990:CDS
ATGCGTATGTTGGAAAACTC+AGG 0.602255 5_2:-13051329 Msa0757990:intron
AGTTGCCGGTTCAGAGCCAA+GGG 0.602888 5_2:-13050851 Msa0757990:CDS
GCAGGAGAAACATTATGAGA+TGG 0.604319 5_2:+13050696 None:intergenic
CAAGTAGGCATTCACAGCGT+CGG 0.608761 5_2:-13052933 Msa0757990:CDS
GGAAGGCAGAGAGTGGATAA+CGG 0.610357 5_2:+13050610 None:intergenic
GCTGCTCAAGCATATCGCAA+AGG 0.610612 5_2:+13050584 None:intergenic
TTTCAAGGGCCGTGTTACAG+TGG 0.611483 5_2:-13050757 Msa0757990:CDS
CAGCATGTGAATGAGATCCA+TGG 0.613020 5_2:-13050548 Msa0757990:exon
ATAATGAAGCTTCTAAAACC+CGG 0.616872 5_2:+13053694 None:intergenic
TGAATGTTCTCCGCACTAGA+GGG 0.618617 5_2:-13051052 Msa0757990:CDS
GAACCAAATCGAAGAAACAG+AGG 0.620148 5_2:+13053735 None:intergenic
AAGGCTTGGAAGGCAGAGAG+TGG 0.622272 5_2:+13050603 None:intergenic
TTCCGGCGAAAACCCGAAGA+GGG 0.630212 5_2:+13053813 None:intergenic
TTCTGTGTGTAAATCATGGA+GGG 0.630242 5_2:-13052749 Msa0757990:CDS
AGATATGATGAAGTCTGTGC+CGG 0.635175 5_2:+13051383 None:intergenic
TTGTATTTCTCACCACACAT+GGG 0.641041 5_2:-13050302 Msa0757990:three_prime_UTR
GTTCAGACTCCCGAAGAGTG+TGG 0.642949 5_2:-13052709 Msa0757990:CDS
TGCTGGTGCCTAAATTTCAA+GGG 0.642974 5_2:-13050771 Msa0757990:CDS
TAACTGAAGCCACTGTAACA+CGG 0.643817 5_2:+13050748 None:intergenic
ATTCCGGCGAAAACCCGAAG+AGG 0.644601 5_2:+13053812 None:intergenic
TGTATTCCAGCTCCGTGTGG+AGG 0.645160 5_2:+13051170 None:intergenic
CTTCTGTGTGTAAATCATGG+AGG 0.649209 5_2:-13052750 Msa0757990:CDS
ATTGGTAATACGTCGAGGAG+AGG 0.649495 5_2:-13052961 Msa0757990:CDS
ATATCAAGTAGCAATTCAGA+TGG 0.650336 5_2:+13052835 None:intergenic
CATGTGTGGTGAGAAATACA+AGG 0.651293 5_2:+13050304 None:intergenic
ATTCCGCAACCGGAATGGTG+TGG 0.659382 5_2:+13053865 None:intergenic
GGTTGTATTCCAGCTCCGTG+TGG 0.669899 5_2:+13051167 None:intergenic
CACTGTATCGGAGAATCACG+AGG 0.670191 5_2:+13052545 None:intergenic
GATACAGTGCTTCATCAGGA+GGG 0.688983 5_2:-13052531 Msa0757990:CDS
TCACTTGAACCTATTCAGCA+GGG 0.690245 5_2:-13052874 Msa0757990:CDS
TAATACGTCGAGGAGAGGTG+TGG 0.694801 5_2:-13052956 Msa0757990:CDS
CTAACAATATAGTTACACGC+TGG 0.696992 5_2:+13051092 None:intergenic
ATGGGATTGGTAATACGTCG+AGG 0.700501 5_2:-13052966 Msa0757990:CDS
TATGACAGCCAACCTCCACA+CGG 0.700970 5_2:-13051182 Msa0757990:CDS
AGCTGTTAAGGAGATGAAGG+AGG 0.704439 5_2:+13053781 None:intergenic
ACAACAGCAATACCCATGTG+TGG 0.714668 5_2:+13050290 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATATTGTTATGTTGT+TGG - chr5_2:13050805-13050824 Msa0757990:CDS 15.0%
!! TAAAATTAAATTTAGTTGCA+GGG + chr5_2:13053873-13053892 None:intergenic 15.0%
!! TTTACTCATAACATAAACAT+AGG - chr5_2:13050335-13050354 Msa0757990:three_prime_UTR 20.0%
!! TTTGTAAAATTGTGTTTGTT+AGG - chr5_2:13050976-13050995 Msa0757990:CDS 20.0%
!!! TTGTAAAATTGTGTTTGTTA+GGG - chr5_2:13050977-13050996 Msa0757990:CDS 20.0%
!! GATATTAGCATACAAAAAAT+TGG - chr5_2:13051085-13051104 Msa0757990:CDS 20.0%
!!! TTTTCATTCTTTTTTCTCAA+AGG - chr5_2:13051821-13051840 Msa0757990:intron 20.0%
!!! TTTCATTCTTTTTTCTCAAA+GGG - chr5_2:13051822-13051841 Msa0757990:intron 20.0%
!! TTATGAATTTAGATCTTGAA+CGG - chr5_2:13051891-13051910 Msa0757990:intron 20.0%
!!! TTTTATTGCACTAAATATGT+AGG - chr5_2:13051917-13051936 Msa0757990:intron 20.0%
!! TTTATTGCACTAAATATGTA+GGG - chr5_2:13051918-13051937 Msa0757990:intron 20.0%
!! ACTTTCTCAAATTAATTACT+TGG - chr5_2:13051996-13052015 Msa0757990:intron 20.0%
!!! TTATTGTGATGCTAAATTTT+AGG - chr5_2:13052246-13052265 Msa0757990:intron 20.0%
!!! TATTGTGATGCTAAATTTTA+GGG - chr5_2:13052247-13052266 Msa0757990:intron 20.0%
!!! TTTAAGCAATTTTCAAGTAT+TGG + chr5_2:13052301-13052320 None:intergenic 20.0%
!!! TTTAAAATCACCCAAATAAA+GGG + chr5_2:13052438-13052457 None:intergenic 20.0%
!! TACCAATTTCAAAATCATTA+AGG + chr5_2:13052744-13052763 None:intergenic 20.0%
!!! AACTGATGATAAATTTTGAT+AGG - chr5_2:13053004-13053023 Msa0757990:CDS 20.0%
!! TGGAAAAGATATATTTACTA+TGG - chr5_2:13053602-13053621 Msa0757990:intron 20.0%
!! CTAAAATTAAATTTAGTTGC+AGG + chr5_2:13053874-13053893 None:intergenic 20.0%
!!! TTGGTTCTTCTTGTTTTTTA+TGG - chr5_2:13050520-13050539 Msa0757990:three_prime_UTR 25.0%
!!! TTTTAGAAGCTTCATTATCA+AGG - chr5_2:13050550-13050569 Msa0757990:exon 25.0%
! ATTTATGAATGTGAGCAAAT+AGG - chr5_2:13050915-13050934 Msa0757990:CDS 25.0%
! TTTATGAATGTGAGCAAATA+GGG - chr5_2:13050916-13050935 Msa0757990:CDS 25.0%
!!! ATGTGGGTTTTTTTGTTTTT+AGG - chr5_2:13050952-13050971 Msa0757990:CDS 25.0%
!!! TGTTTTTATAAACTTCAGAG+TGG - chr5_2:13051136-13051155 Msa0757990:CDS 25.0%
!!! TTAATTCTTCACTCCTTTTT+TGG - chr5_2:13051588-13051607 Msa0757990:intron 25.0%
!!! ACTTTTTGTTTATGAATAGC+CGG - chr5_2:13051669-13051688 Msa0757990:intron 25.0%
!!! TTGAATCACTTTTGAAAACT+TGG - chr5_2:13051865-13051884 Msa0757990:intron 25.0%
! TTAATTACACGTGCATTATT+TGG - chr5_2:13052159-13052178 Msa0757990:intron 25.0%
!!! AAATTTTAGGGCTAATTCTA+CGG - chr5_2:13052259-13052278 Msa0757990:intron 25.0%
! CAAGTAATTTCTTAACTATG+AGG + chr5_2:13052345-13052364 None:intergenic 25.0%
!! TCATTTGTTTCCCTTTATTT+GGG - chr5_2:13052425-13052444 Msa0757990:intron 25.0%
!!! CTTTAAAATCACCCAAATAA+AGG + chr5_2:13052439-13052458 None:intergenic 25.0%
!!! TAGATGTTCTTTTTCATTGT+TGG - chr5_2:13052603-13052622 Msa0757990:intron 25.0%
!!! TTTTTAACTTCTGACTTGAA+TGG - chr5_2:13052649-13052668 Msa0757990:intron 25.0%
!!! TTTTAACTTCTGACTTGAAT+GGG - chr5_2:13052650-13052669 Msa0757990:intron 25.0%
! AATCATTAAGGTGAATTGAA+CGG + chr5_2:13052732-13052751 None:intergenic 25.0%
!!! CACCTTAATGATTTTGAAAT+TGG - chr5_2:13052739-13052758 Msa0757990:CDS 25.0%
!!! TTCTGTTTTTTCTTATACAG+CGG - chr5_2:13052782-13052801 Msa0757990:CDS 25.0%
!! AGATAAAATAAAGAGTGTGT+TGG + chr5_2:13052981-13053000 None:intergenic 25.0%
!! TTTTGATAGGTCTAACTTTT+TGG - chr5_2:13053017-13053036 Msa0757990:exon 25.0%
!! TTTGATAGGTCTAACTTTTT+GGG - chr5_2:13053018-13053037 Msa0757990:exon 25.0%
! ATATAGATGAAAAAAACCAG+CGG + chr5_2:13053724-13053743 None:intergenic 25.0%
!! TCTTTTATGTTAGTTGTATC+TGG - chr5_2:13053820-13053839 Msa0757990:five_prime_UTR 25.0%
CTCATAACATAAACATAGGT+TGG - chr5_2:13050339-13050358 Msa0757990:three_prime_UTR 30.0%
!!! CTTCTTGTTTTTTATGGATC+CGG - chr5_2:13050526-13050545 Msa0757990:three_prime_UTR 30.0%
!!! TTCTTGTTTTTTATGGATCC+GGG - chr5_2:13050527-13050546 Msa0757990:three_prime_UTR 30.0%
!! ATAATGAAGCTTCTAAAACC+CGG + chr5_2:13050548-13050567 None:intergenic 30.0%
!!! CTGTTGATGATGATGTTTTT+AGG - chr5_2:13050782-13050801 Msa0757990:CDS 30.0%
! TGAAGTATTTGCAAAAAGCT+AGG - chr5_2:13050860-13050879 Msa0757990:CDS 30.0%
ATATCAAGTAGCAATTCAGA+TGG + chr5_2:13051407-13051426 None:intergenic 30.0%
! TGCTACTTGATATAATTCGA+AGG - chr5_2:13051414-13051433 Msa0757990:CDS 30.0%
GCTACTTGATATAATTCGAA+GGG - chr5_2:13051415-13051434 Msa0757990:CDS 30.0%
AACAACAATTACGCCAAAAA+AGG + chr5_2:13051604-13051623 None:intergenic 30.0%
AAGATACAGAACAACCAAAA+TGG + chr5_2:13051640-13051659 None:intergenic 30.0%
!! CTTTTTGTTTATGAATAGCC+GGG - chr5_2:13051670-13051689 Msa0757990:intron 30.0%
TCTGCATATCTATTGTACTA+TGG - chr5_2:13051742-13051761 Msa0757990:intron 30.0%
ATATCTATTGTACTATGGAC+TGG - chr5_2:13051747-13051766 Msa0757990:intron 30.0%
!! GATGTTGATTCGACAAAAAA+AGG - chr5_2:13052368-13052387 Msa0757990:intron 30.0%
! TTGATTCGACAAAAAAAGGA+AGG - chr5_2:13052372-13052391 Msa0757990:intron 30.0%
TGATTCGACAAAAAAAGGAA+GGG - chr5_2:13052373-13052392 Msa0757990:intron 30.0%
CTCATTTGTTTCCCTTTATT+TGG - chr5_2:13052424-13052443 Msa0757990:intron 30.0%
! AAACTAGAAGTGCATTTCTT+TGG - chr5_2:13052528-13052547 Msa0757990:CDS 30.0%
! TTTGGAGTCATAGTATGAAA+TGG - chr5_2:13052546-13052565 Msa0757990:CDS 30.0%
TTGGAGTCATAGTATGAAAT+GGG - chr5_2:13052547-13052566 Msa0757990:CDS 30.0%
TATTAGCTGCCAAAAAGATA+AGG - chr5_2:13052826-13052845 Msa0757990:CDS 30.0%
GTGTTGGAAATTTGAAAAGT+GGG + chr5_2:13052965-13052984 None:intergenic 30.0%
TGTGTTGGAAATTTGAAAAG+TGG + chr5_2:13052966-13052985 None:intergenic 30.0%
ATGATGCAATTCATTCTTCT+CGG + chr5_2:13053213-13053232 None:intergenic 30.0%
GTAATTTGAGGAAAAGATGT+AGG + chr5_2:13053285-13053304 None:intergenic 30.0%
AAATGCTCATCAGTAATTTG+AGG + chr5_2:13053297-13053316 None:intergenic 30.0%
GAATTGCTTAAATCTCCAAT+TGG + chr5_2:13053357-13053376 None:intergenic 30.0%
AGTTAAGAACTTTCAACTTG+TGG - chr5_2:13053509-13053528 Msa0757990:intron 30.0%
GAAATACAAGGCAACTATAT+AGG + chr5_2:13053926-13053945 None:intergenic 30.0%
TAAAGCTGTTAAGGAGATGA+AGG + chr5_2:13050464-13050483 None:intergenic 35.0%
!! TTAGCTGATTTGTTCGTTTG+AGG - chr5_2:13050598-13050617 Msa0757990:CDS 35.0%
! TGTTCGTTTGAGGATTTTTC+AGG - chr5_2:13050608-13050627 Msa0757990:CDS 35.0%
!!! TTTGAGGATTTTTCAGGTGT+TGG - chr5_2:13050614-13050633 Msa0757990:CDS 35.0%
!!! TTGAGGATTTTTCAGGTGTT+GGG - chr5_2:13050615-13050634 Msa0757990:CDS 35.0%
!! TTTGTAGATCGTTTTGACCA+TGG - chr5_2:13050702-13050721 Msa0757990:CDS 35.0%
ACAACTATTTACACACACCA+TGG + chr5_2:13050722-13050741 None:intergenic 35.0%
! AAAGCTAGGTTTTTGTGATG+TGG - chr5_2:13050874-13050893 Msa0757990:CDS 35.0%
! AAGCTAGGTTTTTGTGATGT+GGG - chr5_2:13050875-13050894 Msa0757990:CDS 35.0%
!!! AGGGTTTTTTGATGTGAATG+TGG - chr5_2:13050935-13050954 Msa0757990:CDS 35.0%
!!! GGGTTTTTTGATGTGAATGT+GGG - chr5_2:13050936-13050955 Msa0757990:CDS 35.0%
CAAAGTACAAACAGATACAC+TGG + chr5_2:13051037-13051056 None:intergenic 35.0%
! TTCAGAGTGGAGAATGATTT+TGG - chr5_2:13051149-13051168 Msa0757990:CDS 35.0%
AGTGATGTTAGAGTGATATC+AGG + chr5_2:13051350-13051369 None:intergenic 35.0%
TTCTGTGTGTAAATCATGGA+GGG - chr5_2:13051490-13051509 Msa0757990:intron 35.0%
CTGAACAATCTCTTGTGTAA+CGG + chr5_2:13051516-13051535 None:intergenic 35.0%
GTTTCCTATTTCGTTAAAGC+AGG - chr5_2:13051562-13051581 Msa0757990:intron 35.0%
ATCACCTGCTTTAACGAAAT+AGG + chr5_2:13051569-13051588 None:intergenic 35.0%
! TTTTCGCTGCTTATCCATTT+TGG - chr5_2:13051623-13051642 Msa0757990:intron 35.0%
CACATTGAAGCAAACTTACA+TGG + chr5_2:13051775-13051794 None:intergenic 35.0%
! CATGTAAGTTTGCTTCAATG+TGG - chr5_2:13051773-13051792 Msa0757990:intron 35.0%
!! TTTCAAGTATTGGTCTGATG+CGG + chr5_2:13052291-13052310 None:intergenic 35.0%
! GAAACAAATGAGTTGAGTTG+AGG + chr5_2:13052416-13052435 None:intergenic 35.0%
!!! TTTGGGTGATTTTAAAGTGC+CGG - chr5_2:13052442-13052461 Msa0757990:intron 35.0%
GAGGAAAACAAAGCACAAAT+CGG + chr5_2:13052710-13052729 None:intergenic 35.0%
CACAGACTTCATCATATCTT+TGG - chr5_2:13052860-13052879 Msa0757990:CDS 35.0%
! TGGAAAACTCAGGTAAGTTT+TGG - chr5_2:13052920-13052939 Msa0757990:CDS 35.0%
CTAACAATATAGTTACACGC+TGG + chr5_2:13053150-13053169 None:intergenic 35.0%
! CCAATTGGATCTTTACCTTT+TGG + chr5_2:13053342-13053361 None:intergenic 35.0%
CCAAAAGGTAAAGATCCAAT+TGG - chr5_2:13053339-13053358 Msa0757990:intron 35.0%
ATCTTGCAGTTTGGAAAGAT+TGG - chr5_2:13053582-13053601 Msa0757990:intron 35.0%
TTATGCACAATTCTTCAGCA+TGG - chr5_2:13053763-13053782 Msa0757990:five_prime_UTR 35.0%
TTGTATTTCTCACCACACAT+GGG - chr5_2:13053937-13053956 Msa0757990:five_prime_UTR 35.0%
! TGAAAAATGGATTCCGCAAC+CGG + chr5_2:13050387-13050406 None:intergenic 40.0%
!! GTTGCGGAATCCATTTTTCA+CGG - chr5_2:13050387-13050406 Msa0757990:three_prime_UTR 40.0%
!!! GGAGGGTTTTAAAGCTGTTA+AGG + chr5_2:13050473-13050492 None:intergenic 40.0%
GAAACAGAGGCAGAAAAACA+CGG + chr5_2:13050494-13050513 None:intergenic 40.0%
GAACCAAATCGAAGAAACAG+AGG + chr5_2:13050507-13050526 None:intergenic 40.0%
GATGTTTGCAGTTATTGTGC+TGG - chr5_2:13051181-13051200 Msa0757990:CDS 40.0%
! TGTCGTTGAGAAGCATAGTA+CGG - chr5_2:13051231-13051250 Msa0757990:intron 40.0%
ATCACTTGAACCTATTCAGC+AGG - chr5_2:13051364-13051383 Msa0757990:CDS 40.0%
TCACTTGAACCTATTCAGCA+GGG - chr5_2:13051365-13051384 Msa0757990:CDS 40.0%
GTGCTTCTGTGTGTAAATCA+TGG - chr5_2:13051486-13051505 Msa0757990:intron 40.0%
CTTCTGTGTGTAAATCATGG+AGG - chr5_2:13051489-13051508 Msa0757990:intron 40.0%
GTTTGAACACGTGCATTACA+TGG - chr5_2:13052020-13052039 Msa0757990:intron 40.0%
TTCGACAAAAAAAGGAAGGG+AGG - chr5_2:13052376-13052395 Msa0757990:intron 40.0%
GACTTGAATGGGACAGAAAT+TGG - chr5_2:13052661-13052680 Msa0757990:intron 40.0%
AACAAAGCACAAATCGGTTG+AGG + chr5_2:13052704-13052723 None:intergenic 40.0%
CATTAAGGTGAATTGAACGG+AGG + chr5_2:13052729-13052748 None:intergenic 40.0%
TAGCTGCCAAAAAGATAAGG+AGG - chr5_2:13052829-13052848 Msa0757990:CDS 40.0%
AGCTGCCAAAAAGATAAGGA+GGG - chr5_2:13052830-13052849 Msa0757990:CDS 40.0%
AAAAAGATAAGGAGGGCAAC+CGG - chr5_2:13052837-13052856 Msa0757990:CDS 40.0%
AGATATGATGAAGTCTGTGC+CGG + chr5_2:13052859-13052878 None:intergenic 40.0%
! TTTTCCAACATACGCATTGC+TGG + chr5_2:13052907-13052926 None:intergenic 40.0%
ATGCGTATGTTGGAAAACTC+AGG - chr5_2:13052910-13052929 Msa0757990:CDS 40.0%
GCTGTCATATATGGTGAACT+TGG + chr5_2:13053046-13053065 None:intergenic 40.0%
CTGGAATACAACCAAATAGC+CGG - chr5_2:13053082-13053101 Msa0757990:intron 40.0%
AACATTCAGCTCATAGGCAA+TGG + chr5_2:13053175-13053194 None:intergenic 40.0%
TGAGGAAAAGATGTAGGAGT+TGG + chr5_2:13053279-13053298 None:intergenic 40.0%
TTGAGTACCAGAGACTCAAA+TGG + chr5_2:13053414-13053433 None:intergenic 40.0%
TCAAAAACAAGTCTCCCAGA+TGG - chr5_2:13053430-13053449 Msa0757990:intron 40.0%
ATGCTGGTGCCTAAATTTCA+AGG - chr5_2:13053467-13053486 Msa0757990:intron 40.0%
TGCTGGTGCCTAAATTTCAA+GGG - chr5_2:13053468-13053487 Msa0757990:intron 40.0%
TAACACGGCCCTTGAAATTT+AGG + chr5_2:13053479-13053498 None:intergenic 40.0%
TAACTGAAGCCACTGTAACA+CGG + chr5_2:13053494-13053513 None:intergenic 40.0%
GCAGGAGAAACATTATGAGA+TGG + chr5_2:13053546-13053565 None:intergenic 40.0%
GAGAAGGTTATCTTGCAGTT+TGG - chr5_2:13053573-13053592 Msa0757990:intron 40.0%
AATACTAACGACCGATTGTC+AGG + chr5_2:13053799-13053818 None:intergenic 40.0%
AGGGCTATAGAATGACATAC+AGG + chr5_2:13053854-13053873 None:intergenic 40.0%
CATGTGTGGTGAGAAATACA+AGG + chr5_2:13053938-13053957 None:intergenic 40.0%
CTTGTATTTCTCACCACACA+TGG - chr5_2:13053936-13053955 Msa0757990:five_prime_UTR 40.0%
!! GAAGGAGGCGTTGAAAATTC+CGG + chr5_2:13050446-13050465 None:intergenic 45.0%
AGCTGTTAAGGAGATGAAGG+AGG + chr5_2:13050461-13050480 None:intergenic 45.0%
! CTGCCTCTGTTTCTTCGATT+TGG - chr5_2:13050501-13050520 Msa0757990:three_prime_UTR 45.0%
! GTCGTTGAGAAGCATAGTAC+GGG - chr5_2:13051232-13051251 Msa0757990:intron 45.0%
AAGCATAGTACGGGAACTCA+AGG - chr5_2:13051241-13051260 Msa0757990:intron 45.0%
AACTCAAGGAGATGAGGGAT+GGG - chr5_2:13051255-13051274 Msa0757990:intron 45.0%
! ATGGGATTGGTAATACGTCG+AGG - chr5_2:13051273-13051292 Msa0757990:intron 45.0%
! ATTGGTAATACGTCGAGGAG+AGG - chr5_2:13051278-13051297 Msa0757990:intron 45.0%
AACCTATTCAGCAGGGACAA+TGG - chr5_2:13051372-13051391 Msa0757990:CDS 45.0%
ACCTATTCAGCAGGGACAAT+GGG - chr5_2:13051373-13051392 Msa0757990:CDS 45.0%
TAGAAGAGACCGAGACTTCT+TGG - chr5_2:13051438-13051457 Msa0757990:CDS 45.0%
GTCAATCTTCCACACTCTTC+GGG + chr5_2:13051542-13051561 None:intergenic 45.0%
CGTCAATCTTCCACACTCTT+CGG + chr5_2:13051543-13051562 None:intergenic 45.0%
!! CTCCTGATGAAGCACTGTAT+CGG + chr5_2:13051709-13051728 None:intergenic 45.0%
GATACAGTGCTTCATCAGGA+GGG - chr5_2:13051708-13051727 Msa0757990:intron 45.0%
GACAAAAAAAGGAAGGGAGG+CGG - chr5_2:13052379-13052398 Msa0757990:intron 45.0%
ACAAAAAAAGGAAGGGAGGC+GGG - chr5_2:13052380-13052399 Msa0757990:intron 45.0%
CTAAAATCCGACAGCCTCTA+GGG + chr5_2:13052472-13052491 None:intergenic 45.0%
! TCTAAAATCCGACAGCCTCT+AGG + chr5_2:13052473-13052492 None:intergenic 45.0%
ACAGAAATTGGCTGAACCTG+TGG - chr5_2:13052673-13052692 Msa0757990:intron 45.0%
! GGTTGCCCTCCTTATCTTTT+TGG + chr5_2:13052838-13052857 None:intergenic 45.0%
! TGGAGGTTGGCTGTCATATA+TGG + chr5_2:13053055-13053074 None:intergenic 45.0%
AATGAAATCTCCTGCTGGAC+CGG + chr5_2:13053104-13053123 None:intergenic 45.0%
CCTAGAATGAAATCTCCTGC+TGG + chr5_2:13053109-13053128 None:intergenic 45.0%
CCAGCAGGAGATTTCATTCT+AGG - chr5_2:13053106-13053125 Msa0757990:intron 45.0%
CAGGAGATTTCATTCTAGGC+AGG - chr5_2:13053110-13053129 Msa0757990:intron 45.0%
TAGTTACACGCTGGAACTCT+TGG + chr5_2:13053141-13053160 None:intergenic 45.0%
TGAATGTTCTCCGCACTAGA+GGG - chr5_2:13053187-13053206 Msa0757990:intron 45.0%
TATACCTGTCTCAGCTGTTC+AGG - chr5_2:13053239-13053258 Msa0757990:intron 45.0%
!!! GGATCTTTACCTTTTGGCTC+TGG + chr5_2:13053336-13053355 None:intergenic 45.0%
ATAACCTTCTCTTGCTCTGC+AGG + chr5_2:13053564-13053583 None:intergenic 45.0%
TCAAGCATATCGCAAAGGCT+TGG + chr5_2:13053653-13053672 None:intergenic 45.0%
CATGGATCTCATTCACATGC+TGG + chr5_2:13053693-13053712 None:intergenic 45.0%
CAGCATGTGAATGAGATCCA+TGG - chr5_2:13053691-13053710 Msa0757990:five_prime_UTR 45.0%
!! AAACCAGCGGACTATAACCA+TGG + chr5_2:13053711-13053730 None:intergenic 45.0%
ACAACAGCAATACCCATGTG+TGG + chr5_2:13053952-13053971 None:intergenic 45.0%
CGGAATGGTGTGGCATGAAT+CGG + chr5_2:13050367-13050386 None:intergenic 50.0%
CGATTCATGCCACACCATTC+CGG - chr5_2:13050365-13050384 Msa0757990:three_prime_UTR 50.0%
! AATGGATTCCGCAACCGGAA+TGG + chr5_2:13050382-13050401 None:intergenic 50.0%
!! GCGGAATCCATTTTTCACGG+CGG - chr5_2:13050390-13050409 Msa0757990:three_prime_UTR 50.0%
!! TCCATTTTTCACGGCGGTGT+TGG - chr5_2:13050396-13050415 Msa0757990:three_prime_UTR 50.0%
ACCAACACCGCCGTGAAAAA+TGG + chr5_2:13050400-13050419 None:intergenic 50.0%
!! ATTTTTCACGGCGGTGTTGG+TGG - chr5_2:13050399-13050418 Msa0757990:three_prime_UTR 50.0%
CAGAGGCAGAAAAACACGGA+GGG + chr5_2:13050490-13050509 None:intergenic 50.0%
ACAGAGGCAGAAAAACACGG+AGG + chr5_2:13050491-13050510 None:intergenic 50.0%
TACGGGAACTCAAGGAGATG+AGG - chr5_2:13051249-13051268 Msa0757990:intron 50.0%
ACGGGAACTCAAGGAGATGA+GGG - chr5_2:13051250-13051269 Msa0757990:intron 50.0%
GAACTCAAGGAGATGAGGGA+TGG - chr5_2:13051254-13051273 Msa0757990:intron 50.0%
AAGGAGATGAGGGATGGGAT+TGG - chr5_2:13051260-13051279 Msa0757990:intron 50.0%
TAATACGTCGAGGAGAGGTG+TGG - chr5_2:13051283-13051302 Msa0757990:intron 50.0%
CAAGTAGGCATTCACAGCGT+CGG - chr5_2:13051306-13051325 Msa0757990:intron 50.0%
CACTGTATCGGAGAATCACG+AGG + chr5_2:13051697-13051716 None:intergenic 50.0%
CTCCGATACAGTGCTTCATC+AGG - chr5_2:13051704-13051723 Msa0757990:intron 50.0%
CGATACAGTGCTTCATCAGG+AGG - chr5_2:13051707-13051726 Msa0757990:intron 50.0%
ATCGGTTGAGGTGTATCCAC+AGG + chr5_2:13052692-13052711 None:intergenic 50.0%
CGTTCCAGCAATGCGTATGT+TGG - chr5_2:13052900-13052919 Msa0757990:CDS 50.0%
TATGACAGCCAACCTCCACA+CGG - chr5_2:13053057-13053076 Msa0757990:intron 50.0%
GCGGAGAACATTCAGCTCAT+AGG + chr5_2:13053181-13053200 None:intergenic 50.0%
CTGAATGTTCTCCGCACTAG+AGG - chr5_2:13053186-13053205 Msa0757990:intron 50.0%
CTGTCTCAGCTGTTCAGGAA+GGG - chr5_2:13053244-13053263 Msa0757990:intron 50.0%
TGTCTCAGCTGTTCAGGAAG+GGG - chr5_2:13053245-13053264 Msa0757990:intron 50.0%
TGCAGCTGTTCATGCCATCT+GGG + chr5_2:13053447-13053466 None:intergenic 50.0%
TTGCAGCTGTTCATGCCATC+TGG + chr5_2:13053448-13053467 None:intergenic 50.0%
TTTCAAGGGCCGTGTTACAG+TGG - chr5_2:13053482-13053501 Msa0757990:intron 50.0%
TTCTCCTGCAGAGCAAGAGA+AGG - chr5_2:13053557-13053576 Msa0757990:intron 50.0%
GGAAGGCAGAGAGTGGATAA+CGG + chr5_2:13053632-13053651 None:intergenic 50.0%
GCATATCGCAAAGGCTTGGA+AGG + chr5_2:13053649-13053668 None:intergenic 50.0%
GCTGCTCAAGCATATCGCAA+AGG + chr5_2:13053658-13053677 None:intergenic 50.0%
GATCCATGGTTATAGTCCGC+TGG - chr5_2:13053705-13053724 Msa0757990:five_prime_UTR 50.0%
GTGAGATGCAGCCTGACAAT+CGG - chr5_2:13053785-13053804 Msa0757990:five_prime_UTR 50.0%
ATGCCACACCATTCCGGTTG+CGG - chr5_2:13050371-13050390 Msa0757990:three_prime_UTR 55.0%
ATTCCGCAACCGGAATGGTG+TGG + chr5_2:13050377-13050396 None:intergenic 55.0%
TTCCGGCGAAAACCCGAAGA+GGG + chr5_2:13050429-13050448 None:intergenic 55.0%
ATTCCGGCGAAAACCCGAAG+AGG + chr5_2:13050430-13050449 None:intergenic 55.0%
GCCCATTGTCCCTGCTGAAT+AGG + chr5_2:13051377-13051396 None:intergenic 55.0%
ACGTGCAGGCCAAGAAGTCT+CGG + chr5_2:13051450-13051469 None:intergenic 55.0%
GAAACGACAACAGCACGTGC+AGG + chr5_2:13051464-13051483 None:intergenic 55.0%
GTTCAGACTCCCGAAGAGTG+TGG - chr5_2:13051530-13051549 Msa0757990:intron 55.0%
ATCGGAGAATCACGAGGACC+CGG + chr5_2:13051691-13051710 None:intergenic 55.0%
!! AAAGTGCCGGTTCACCCTAG+AGG - chr5_2:13052455-13052474 Msa0757990:intron 55.0%
TGTATTCCAGCTCCGTGTGG+AGG + chr5_2:13053072-13053091 None:intergenic 55.0%
GGTTGTATTCCAGCTCCGTG+TGG + chr5_2:13053075-13053094 None:intergenic 55.0%
AACCAAATAGCCGGTCCAGC+AGG - chr5_2:13053091-13053110 Msa0757990:intron 55.0%
TTCTTCTCGGCCCTCTAGTG+CGG + chr5_2:13053200-13053219 None:intergenic 55.0%
CCTTCCTGAACAGCTGAGAC+AGG + chr5_2:13053246-13053265 None:intergenic 55.0%
CCTGTCTCAGCTGTTCAGGA+AGG - chr5_2:13053243-13053262 Msa0757990:intron 55.0%
GTCTCAGCTGTTCAGGAAGG+GGG - chr5_2:13053246-13053265 Msa0757990:intron 55.0%
TTCAACCCTCGCAGAGTTGC+CGG - chr5_2:13053374-13053393 Msa0757990:intron 55.0%
!! AGTTGCCGGTTCAGAGCCAA+GGG - chr5_2:13053388-13053407 Msa0757990:intron 55.0%
!! AATGGCCCTTGGCTCTGAAC+CGG + chr5_2:13053396-13053415 None:intergenic 55.0%
CCAGAGACTCAAATGGCCCT+TGG + chr5_2:13053407-13053426 None:intergenic 55.0%
CCAAGGGCCATTTGAGTCTC+TGG - chr5_2:13053404-13053423 Msa0757990:intron 55.0%
GGCATGAACAGCTGCAATGC+TGG - chr5_2:13053451-13053470 Msa0757990:intron 55.0%
AAGGCTTGGAAGGCAGAGAG+TGG + chr5_2:13053639-13053658 None:intergenic 55.0%
!! TTTCACGGCGGTGTTGGTGG+CGG - chr5_2:13050402-13050421 Msa0757990:three_prime_UTR 60.0%
!! TGTTGGTGGCGGACCCTCTT+CGG - chr5_2:13050413-13050432 Msa0757990:three_prime_UTR 60.0%
!! GACCCTCTTCGGGTTTTCGC+CGG - chr5_2:13050424-13050443 Msa0757990:three_prime_UTR 60.0%
! CGAGGAGAGGTGTGGCAAGT+AGG - chr5_2:13051291-13051310 Msa0757990:intron 60.0%
AAGGAAGGGAGGCGGGAGTA+TGG - chr5_2:13052387-13052406 Msa0757990:intron 60.0%
! AGGAAGGGAGGCGGGAGTAT+GGG - chr5_2:13052388-13052407 Msa0757990:intron 60.0%
!! CGACAGCCTCTAGGGTGAAC+CGG + chr5_2:13052464-13052483 None:intergenic 60.0%
CGGTTCACCCTAGAGGCTGT+CGG - chr5_2:13052462-13052481 Msa0757990:intron 60.0%
TTCCAGCTCCGTGTGGAGGT+TGG + chr5_2:13053068-13053087 None:intergenic 60.0%
CTCCTGCTGGACCGGCTATT+TGG + chr5_2:13053096-13053115 None:intergenic 60.0%
GCGTCAGCACCAGAGCCAAA+AGG - chr5_2:13053324-13053343 Msa0757990:intron 60.0%
CTGAACCGGCAACTCTGCGA+GGG + chr5_2:13053382-13053401 None:intergenic 60.0%
TCTGAACCGGCAACTCTGCG+AGG + chr5_2:13053383-13053402 None:intergenic 60.0%
!! GAGTTGCCGGTTCAGAGCCA+AGG - chr5_2:13053387-13053406 Msa0757990:intron 60.0%
!! GTTGGTGGCGGACCCTCTTC+GGG - chr5_2:13050414-13050433 Msa0757990:three_prime_UTR 65.0%
AGCCAACCTCCACACGGAGC+TGG - chr5_2:13053063-13053082 Msa0757990:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 13050287 13053974 13050287 ID=Msa0757990;Name=Msa0757990
chr5_2 mRNA 13050287 13053974 13050287 ID=Msa0757990-mRNA-1;Parent=Msa0757990;Name=Msa0757990-mRNA-1;_AED=0.05;_eAED=0.05;_QI=381|1|1|1|0.75|0.6|5|270|416
chr5_2 exon 13050287 13051235 13050287 ID=Msa0757990-mRNA-1:exon:5865;Parent=Msa0757990-mRNA-1
chr5_2 exon 13051330 13051459 13051330 ID=Msa0757990-mRNA-1:exon:5864;Parent=Msa0757990-mRNA-1
chr5_2 exon 13052486 13052573 13052486 ID=Msa0757990-mRNA-1:exon:5863;Parent=Msa0757990-mRNA-1
chr5_2 exon 13052678 13053069 13052678 ID=Msa0757990-mRNA-1:exon:5862;Parent=Msa0757990-mRNA-1
chr5_2 exon 13053632 13053974 13053632 ID=Msa0757990-mRNA-1:exon:5861;Parent=Msa0757990-mRNA-1
chr5_2 five_prime_UTR 13053632 13053974 13053632 ID=Msa0757990-mRNA-1:five_prime_utr;Parent=Msa0757990-mRNA-1
chr5_2 five_prime_UTR 13053032 13053069 13053032 ID=Msa0757990-mRNA-1:five_prime_utr;Parent=Msa0757990-mRNA-1
chr5_2 CDS 13052678 13053031 13052678 ID=Msa0757990-mRNA-1:cds;Parent=Msa0757990-mRNA-1
chr5_2 CDS 13052486 13052573 13052486 ID=Msa0757990-mRNA-1:cds;Parent=Msa0757990-mRNA-1
chr5_2 CDS 13051330 13051459 13051330 ID=Msa0757990-mRNA-1:cds;Parent=Msa0757990-mRNA-1
chr5_2 CDS 13050557 13051235 13050557 ID=Msa0757990-mRNA-1:cds;Parent=Msa0757990-mRNA-1
chr5_2 three_prime_UTR 13050287 13050556 13050287 ID=Msa0757990-mRNA-1:three_prime_utr;Parent=Msa0757990-mRNA-1
Gene Sequence

>Msa0757990

ATGTCGTTGAGAAGCATAGTACGGGAACTCAAGGAGATGAGGGATGGGATTGGTAATACGTCGAGGAGAGGTGTGGCAAGTAGGCATTCACAGCGTCGGACAAAGTCGCATATTGTTCCTGATATCACTCTAACATCACTTGAACCTATTCAGCAGGGACAATGGGCGAATATACCATCTGAATTGCTACTTGATATAATTCGAAGGGTAGAAGAGACCGAGACTTCTTGGCCTGCACGTGCTGTTGTCGTTTCTTGTGCTTCTGTGTGTAAATCATGGAGGGCCGTTACACAAGAGATTGTTCAGACTCCCGAAGAGTGTGGAAGATTGACGTTTCCTATTTCGTTAAAGCAGCCGGGTCCTCGTGATTCTCCGATACAGTGCTTCATCAGGAGGGACAGAGAAACTTCTGCATATCTATTGTACTATGGACTGGTGCCATCGGAAAATGAGACTGATAAGCTGTTATTAGCTGCCAAAAAGATAAGGAGGGCAACCGGCACAGACTTCATCATATCTTTGGTTGCTGATGATTTTTCTCGTTCCAGCAATGCGTATGTTGGAAAACTCAGGTCTAACTTTTTGGGAACCAAGTTCACCATATATGACAGCCAACCTCCACACGGAGCTGGAATACAACCAAATAGCCGGTCCAGCAGGAGATTTCATTCTAGGCAGGTGTCTCCAAGAGTTCCAGCGTGTAACTATATTGTTAGCACCATTGCCTATGAGCTGAATGTTCTCCGCACTAGAGGGCCGAGAAGAATGAATTGCATCATGAATTCTATACCTGTCTCAGCTGTTCAGGAAGGGGGCAATGCTCCAACTCCTACATCTTTTCCTCAAATTACTGATGAGCATTTTTGTTCTGCGTCAGCACCAGAGCCAAAAGGTAAAGATCCAATTGGAGATTTAAGCAATTCAACCCTCGCAGAGTTGCCGGTTCAGAGCCAAGGGCCATTTGAGTCTCTGGTACTCAAAAACAAGTCTCCCAGATGGCATGAACAGCTGCAATGCTGGTGCCTAAATTTCAAGGGCCGTGTTACAGTGGCTTCAGTTAAGAACTTTCAACTTGTGGCTGCTGTTGAGCCATCTCATAATGTTTCTCCTGCAGAGCAAGAGAAGGTTATCTTGCAGTTTGGAAAGATTGGAAAAGATATATTTACTATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTTGCGATATGCTTGAGCAGCTTTGATACAAAACCAGCATGTGAATGA

Protein sequence

>Msa0757990

MSLRSIVRELKEMRDGIGNTSRRGVASRHSQRRTKSHIVPDITLTSLEPIQQGQWANIPSELLLDIIRRVEETETSWPARAVVVSCASVCKSWRAVTQEIVQTPEECGRLTFPISLKQPGPRDSPIQCFIRRDRETSAYLLYYGLVPSENETDKLLLAAKKIRRATGTDFIISLVADDFSRSSNAYVGKLRSNFLGTKFTIYDSQPPHGAGIQPNSRSSRRFHSRQVSPRVPACNYIVSTIAYELNVLRTRGPRRMNCIMNSIPVSAVQEGGNAPTPTSFPQITDEHFCSASAPEPKGKDPIGDLSNSTLAELPVQSQGPFESLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSHNVSPAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE*