AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0266210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0266210 MtrunA17_Chr2g0331461 95.447 637 28 1 1 636 1 637 0.0 1194
Msa0266210 MtrunA17_Chr2g0331481 84.434 636 99 0 1 636 1 636 0.0 1097
Msa0266210 MtrunA17_Chr2g0331471 83.019 636 107 1 1 636 65 699 0.0 1079
Msa0266210 MtrunA17_Chr2g0331511 78.997 638 121 5 1 636 1 627 0.0 1041
Msa0266210 MtrunA17_Chr4g0003761 66.444 599 188 6 1 592 1 593 0.0 811
Msa0266210 MtrunA17_Chr1g0177591 67.826 575 160 5 1 575 24 573 0.0 798
Msa0266210 MtrunA17_Chr2g0331521 55.651 584 248 6 1 580 1 577 0.0 681
Msa0266210 MtrunA17_Chr1g0177611 68.035 463 129 3 113 575 1 444 0.0 655
Msa0266210 MtrunA17_Chr1g0177631 68.683 463 126 3 113 575 1 444 0.0 640
Msa0266210 MtrunA17_Chr8g0390331 46.459 579 297 6 16 586 6 579 0.0 531
Msa0266210 MtrunA17_Chr1g0147631 47.804 592 292 8 5 584 1 587 1.79e-178 519
Msa0266210 MtrunA17_Chr1g0157601 45.975 559 288 7 14 568 7 555 4.81e-175 509
Msa0266210 MtrunA17_Chr1g0157611 47.059 578 285 9 14 586 8 569 2.40e-170 497
Msa0266210 MtrunA17_Chr1g0157621 44.328 573 301 8 46 611 1 562 4.48e-157 463
Msa0266210 MtrunA17_Chr5g0415791 36.457 587 348 11 15 585 19 596 1.45e-127 389
Msa0266210 MtrunA17_Chr4g0059991 34.876 605 371 10 9 602 7 599 3.31e-122 375
Msa0266210 MtrunA17_Chr4g0059971 36.460 565 347 7 11 566 20 581 3.86e-121 372
Msa0266210 MtrunA17_Chr5g0422881 34.010 591 370 9 8 589 3 582 1.31e-117 362
Msa0266210 MtrunA17_Chr7g0255601 34.064 593 366 12 15 593 17 598 1.63e-116 360
Msa0266210 MtrunA17_Chr7g0255621 32.943 598 376 13 17 600 12 598 2.56e-113 352
Msa0266210 MtrunA17_Chr7g0255611 32.779 601 379 12 10 598 14 601 6.06e-113 351
Msa0266210 MtrunA17_Chr4g0059981 34.583 587 362 12 14 581 15 598 9.04e-113 350
Msa0266210 MtrunA17_Chr8g0362781 34.744 567 351 11 14 566 17 578 9.63e-109 340
Msa0266210 MtrunA17_Chr8g0375311 35.273 550 338 9 25 566 40 579 6.91e-107 335
Msa0266210 MtrunA17_Chr8g0375321 33.391 581 365 9 2 568 6 578 1.26e-103 326
Msa0266210 MtrunA17_Chr8g0375291 34.552 547 336 11 25 561 40 574 1.96e-102 323
Msa0266210 MtrunA17_Chr3g0104011 34.601 552 338 12 25 566 22 560 1.20e-101 320
Msa0266210 MtrunA17_Chr8g0375351 33.273 556 351 9 21 566 34 579 7.84e-101 319
Msa0266210 MtrunA17_Chr8g0375341 32.671 554 357 8 21 566 34 579 4.25e-97 309
Msa0266210 MtrunA17_Chr4g0060001 31.667 600 385 12 14 601 18 604 1.04e-96 309
Msa0266210 MtrunA17_Chr4g0005901 33.877 552 340 12 25 566 32 568 4.42e-96 306
Msa0266210 MtrunA17_Chr8g0375331 33.977 518 324 8 35 544 34 541 1.09e-95 305
Msa0266210 MtrunA17_Chr7g0241741 33.215 563 346 10 15 560 3 552 1.47e-94 302
Msa0266210 MtrunA17_Chr8g0362801 35.318 487 291 10 113 583 1 479 2.25e-94 299
Msa0266210 MtrunA17_Chr8g0375361 33.635 553 343 11 25 566 39 578 4.39e-92 296
Msa0266210 MtrunA17_Chr7g0240271 30.537 596 381 12 14 586 3 588 7.24e-92 296
Msa0266210 MtrunA17_Chr7g0240281 31.325 581 370 14 25 589 24 591 1.17e-89 290
Msa0266210 MtrunA17_Chr3g0142091 32.781 604 364 13 2 594 3 575 1.03e-88 287
Msa0266210 MtrunA17_Chr3g0142101 32.297 579 352 12 25 594 35 582 1.27e-87 284
Msa0266210 MtrunA17_Chr5g0399061 30.810 568 366 15 25 579 26 579 7.58e-87 282
Msa0266210 MtrunA17_Chr2g0325961 33.966 580 334 15 1 566 1 545 1.65e-84 275
Msa0266210 MtrunA17_Chr2g0325951 33.563 581 334 16 1 566 1 544 2.85e-84 275
Msa0266210 MtrunA17_Chr7g0214731 32.546 593 352 15 29 592 65 638 1.18e-83 275
Msa0266210 MtrunA17_Chr2g0326211 33.901 587 324 17 1 566 1 544 2.08e-82 270
Msa0266210 MtrunA17_Chr7g0261811 31.389 583 363 13 36 600 38 601 2.69e-82 271
Msa0266210 MtrunA17_Chr4g0014781 31.173 571 355 13 4 566 10 550 2.63e-81 267
Msa0266210 MtrunA17_Chr7g0261851 31.311 610 379 16 11 604 12 597 2.75e-81 268
Msa0266210 MtrunA17_Chr5g0399071 28.846 572 370 12 14 566 14 567 4.79e-81 267
Msa0266210 MtrunA17_Chr1g0187241 30.676 577 366 13 26 585 26 585 1.78e-80 266
Msa0266210 MtrunA17_Chr4g0014871 31.185 574 359 13 2 566 6 552 2.35e-80 265
Msa0266210 MtrunA17_Chr4g0056431 30.637 581 371 13 25 588 24 589 2.57e-80 265
Msa0266210 MtrunA17_Chr3g0112671 29.256 605 385 14 1 589 1 578 7.00e-80 264
Msa0266210 MtrunA17_Chr4g0014791 31.944 576 342 14 4 566 10 548 7.49e-80 263
Msa0266210 MtrunA17_Chr5g0439381 30.442 565 359 11 29 584 32 571 9.77e-80 263
Msa0266210 MtrunA17_Chr7g0261881 30.849 577 361 14 36 594 38 594 1.63e-79 263
Msa0266210 MtrunA17_Chr5g0415841 32.833 466 291 11 113 566 1 456 1.72e-79 259
Msa0266210 MtrunA17_Chr1g0166711 31.716 577 358 14 36 596 36 592 2.60e-78 260
Msa0266210 MtrunA17_Chr3g0112611 31.915 564 354 14 36 588 43 587 6.52e-78 259
Msa0266210 MtrunA17_Chr3g0077151 31.047 554 339 10 25 570 28 546 6.80e-78 258
Msa0266210 MtrunA17_Chr7g0261791 31.175 587 365 15 21 587 23 590 1.36e-77 258
Msa0266210 MtrunA17_Chr4g0063591 29.492 590 398 11 1 586 1 576 1.79e-77 257
Msa0266210 MtrunA17_Chr7g0261771 29.661 590 380 13 26 598 31 602 3.72e-77 257
Msa0266210 MtrunA17_Chr3g0114501 30.713 547 342 15 36 566 33 558 5.03e-77 256
Msa0266210 MtrunA17_Chr4g0014801 30.541 573 354 15 4 566 10 548 5.05e-77 256
Msa0266210 MtrunA17_Chr4g0008651 30.168 537 354 12 36 566 45 566 1.58e-76 255
Msa0266210 MtrunA17_Chr4g0014841 30.594 572 355 13 4 566 10 548 6.02e-76 253
Msa0266210 MtrunA17_Chr1g0166791 31.250 560 344 16 26 566 24 561 1.14e-75 253
Msa0266210 MtrunA17_Chr7g0240381 29.260 581 361 16 2 566 9 555 4.90e-75 251
Msa0266210 MtrunA17_Chr8g0353031 31.478 575 347 10 28 587 21 563 1.27e-73 247
Msa0266210 MtrunA17_Chr2g0284701 28.477 604 400 15 1 584 11 602 7.29e-73 246
Msa0266210 MtrunA17_Chr7g0214461 29.131 587 386 11 10 586 63 629 3.42e-72 244
Msa0266210 MtrunA17_Chr3g0133341 30.071 562 360 12 16 564 5 546 1.15e-71 241
Msa0266210 MtrunA17_Chr5g0400371 28.881 554 381 8 37 582 124 672 2.32e-70 241
Msa0266210 MtrunA17_Chr7g0240131 29.918 488 319 10 113 588 1 477 2.41e-70 236
Msa0266210 MtrunA17_Chr2g0276751 28.014 589 387 14 11 586 18 582 3.33e-70 238
Msa0266210 MtrunA17_Chr7g0240181 30.652 460 297 9 113 560 1 450 1.29e-69 234
Msa0266210 MtrunA17_Chr7g0240211 30.652 460 297 9 113 560 1 450 1.36e-69 234
Msa0266210 MtrunA17_Chr1g0193391 27.660 611 403 15 11 611 3 584 1.45e-69 237
Msa0266210 MtrunA17_Chr7g0235521 30.652 460 297 9 113 560 1 450 2.47e-69 233
Msa0266210 MtrunA17_Chr4g0014861 31.973 441 276 9 134 566 3 427 3.86e-68 228
Msa0266210 MtrunA17_Chr1g0166741 30.669 538 335 15 26 549 27 540 5.25e-68 232
Msa0266210 MtrunA17_Chr7g0271221 29.558 565 361 16 11 565 3 540 7.72e-67 229
Msa0266210 MtrunA17_Chr1g0213711 28.748 567 369 12 15 566 8 554 2.85e-66 228
Msa0266210 MtrunA17_Chr7g0240151 30.435 460 280 11 113 560 1 432 3.22e-65 221
Msa0266210 MtrunA17_Chr1g0166771 29.637 523 327 17 45 552 11 507 6.60e-65 223
Msa0266210 MtrunA17_Chr1g0147591 55.670 194 81 4 154 344 9 200 6.86e-65 212
Msa0266210 MtrunA17_Chr8g0379971 29.016 610 381 16 14 579 2 603 7.18e-65 224
Msa0266210 MtrunA17_Chr7g0218851 28.857 551 366 9 26 566 47 581 6.03e-63 219
Msa0266210 MtrunA17_Chr7g0261661 29.821 503 322 13 113 600 1 487 8.56e-63 216
Msa0266210 MtrunA17_Chr4g0054891 28.625 538 359 10 37 563 122 645 1.26e-62 219
Msa0266210 MtrunA17_Chr3g0082631 32.558 430 263 12 151 563 34 453 1.20e-61 212
Msa0266210 MtrunA17_Chr1g0166731 30.146 481 308 10 112 579 9 474 2.11e-61 211
Msa0266210 MtrunA17_Chr4g0011471 28.967 542 362 11 36 566 27 556 3.52e-61 213
Msa0266210 MtrunA17_Chr7g0217461 29.004 562 364 15 1 544 2 546 5.27e-61 213
Msa0266210 MtrunA17_Chr8g0379991 30.293 581 353 17 46 579 1 576 1.21e-60 212
Msa0266210 MtrunA17_Chr8g0362711 26.998 563 362 14 28 565 27 565 1.11e-58 207
Msa0266210 MtrunA17_Chr5g0415961 24.518 571 383 12 21 565 18 566 6.63e-54 194
Msa0266210 MtrunA17_Chr4g0011041 25.312 561 388 14 23 566 32 578 1.75e-51 187
Msa0266210 MtrunA17_Chr4g0069581 29.259 499 314 16 86 571 47 519 1.29e-49 181
Msa0266210 MtrunA17_Chr7g0261751 29.114 474 276 13 26 454 31 489 3.40e-48 177
Msa0266210 MtrunA17_Chr6g0451841 25.650 577 358 15 18 566 1 534 5.31e-47 174
Msa0266210 MtrunA17_Chr3g0112631 31.119 286 189 3 294 579 3 280 8.96e-45 161
Msa0266210 MtrunA17_Chr3g0142121 32.781 302 173 7 295 594 11 284 4.50e-43 156
Msa0266210 MtrunA17_Chr7g0261731 33.028 327 191 10 26 339 31 342 1.29e-42 157
Msa0266210 MtrunA17_Chr4g0060071 29.391 279 176 7 290 565 32 292 3.42e-37 140
Msa0266210 MtrunA17_Chr3g0142111 31.690 284 184 5 25 301 46 326 1.13e-34 134
Msa0266210 MtrunA17_Chr7g0234381 26.998 463 283 14 112 566 3 418 2.97e-31 126
Msa0266210 MtrunA17_Chr7g0261721 28.261 230 162 2 371 598 4 232 4.20e-29 115
Msa0266210 MtrunA17_Chr7g0234181 26.797 459 283 13 115 566 1 413 2.41e-27 115
Msa0266210 MtrunA17_Chr7g0234151 25.918 463 288 14 112 566 3 418 2.84e-26 112
Msa0266210 MtrunA17_Chr2g0326221 30.672 238 131 6 331 566 15 220 9.11e-25 103
Msa0266210 MtrunA17_Chr1g0177601 71.930 57 16 0 55 111 1 57 3.46e-20 84.7
Msa0266210 MtrunA17_Chr1g0177621 71.930 57 16 0 55 111 1 57 3.46e-20 84.7
Msa0266210 MtrunA17_Chr1g0147581 41.071 112 60 1 431 542 10 115 2.13e-19 84.3
Msa0266210 MtrunA17_Chr8g0382591 39.695 131 71 5 294 420 3 129 2.46e-18 82.0
Msa0266210 MtrunA17_Chr3g0112651 28.218 202 132 6 100 295 9 203 9.86e-17 79.7
Msa0266210 MtrunA17_Chr7g0240221 32.432 111 65 1 11 111 3 113 4.92e-14 68.9
Msa0266210 MtrunA17_Chr7g0240191 32.432 111 65 1 11 111 3 113 4.92e-14 68.9
Msa0266210 MtrunA17_Chr7g0240161 32.432 111 65 1 11 111 3 113 4.92e-14 68.9
Msa0266210 MtrunA17_Chr7g0240141 31.532 111 66 1 11 111 3 113 1.55e-13 67.8
Msa0266210 MtrunA17_Chr8g0362791 38.372 86 53 0 30 115 41 126 2.13e-12 65.1
Msa0266210 MtrunA17_Chr7g0235511 30.973 113 66 2 11 111 3 115 1.03e-11 62.4
Msa0266210 MtrunA17_Chr4g0060061 33.962 106 68 2 137 241 8 112 9.25e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0266210 AT1G52190.1 54.939 577 253 6 15 585 9 584 0.0 656
Msa0266210 AT3G16180.1 53.242 586 267 7 11 591 6 589 0.0 635
Msa0266210 AT1G69870.1 35.305 558 344 9 18 566 42 591 5.03e-119 368
Msa0266210 AT5G62680.1 37.229 599 354 13 9 593 25 615 1.50e-117 363
Msa0266210 AT1G68570.1 35.264 587 365 8 9 586 5 585 2.11e-114 355
Msa0266210 AT1G18880.1 34.722 576 354 10 30 594 22 586 2.82e-112 349
Msa0266210 AT3G47960.1 36.572 566 340 10 10 566 50 605 3.88e-111 348
Msa0266210 AT5G11570.1 38.787 544 249 11 28 567 14 477 5.92e-111 342
Msa0266210 AT1G27080.1 33.333 582 361 13 24 595 11 575 1.65e-105 331
Msa0266210 AT1G62200.1 35.079 573 345 10 1 562 25 581 4.86e-105 330
Msa0266210 AT1G68570.2 34.470 557 350 8 39 586 5 555 9.73e-103 323
Msa0266210 AT2G02040.1 33.857 573 356 11 5 566 18 578 1.66e-102 323
Msa0266210 AT3G54140.1 35.185 540 329 11 36 566 33 560 1.79e-100 318
Msa0266210 AT3G54140.2 35.185 540 329 11 36 566 33 560 1.79e-100 318
Msa0266210 AT1G62200.2 33.721 602 343 11 1 562 25 610 4.00e-100 318
Msa0266210 AT1G62200.3 33.721 602 343 11 1 562 39 624 6.41e-100 318
Msa0266210 AT5G01180.2 35.135 555 328 13 21 560 17 554 3.23e-99 315
Msa0266210 AT5G01180.3 35.135 555 328 13 21 560 17 554 3.23e-99 315
Msa0266210 AT5G01180.1 35.135 555 328 13 21 560 17 554 3.23e-99 315
Msa0266210 AT1G27080.2 33.273 550 340 13 56 595 1 533 5.58e-97 308
Msa0266210 AT5G28470.2 33.517 543 342 11 25 559 15 546 5.64e-96 306
Msa0266210 AT5G28470.1 33.333 543 341 12 25 559 15 544 4.52e-93 298
Msa0266210 AT3G45650.1 32.920 565 344 11 9 566 4 540 6.21e-92 295
Msa0266210 AT3G45660.1 33.034 557 344 12 14 566 8 539 9.48e-90 290
Msa0266210 AT3G45660.3 33.034 557 344 12 14 566 8 539 9.48e-90 290
Msa0266210 AT3G45660.2 33.034 557 344 12 14 566 29 560 2.08e-89 289
Msa0266210 AT3G54450.1 31.763 573 347 11 25 580 10 555 3.12e-87 283
Msa0266210 AT3G45650.2 31.472 591 344 12 9 566 4 566 3.17e-86 281
Msa0266210 AT1G69860.1 32.671 554 338 11 25 566 16 546 8.23e-85 276
Msa0266210 AT3G45710.1 31.439 563 351 12 12 566 6 541 1.12e-84 276
Msa0266210 AT2G02020.1 31.685 546 324 10 25 566 40 540 3.19e-84 275
Msa0266210 AT2G26690.1 30.192 573 383 10 13 581 10 569 1.50e-82 271
Msa0266210 AT2G26690.2 30.642 545 361 10 41 581 5 536 7.49e-80 263
Msa0266210 AT3G45720.1 30.756 569 352 14 28 588 20 554 8.41e-80 263
Msa0266210 AT5G46050.1 30.699 544 344 12 21 549 19 544 1.05e-79 264
Msa0266210 AT3G21670.1 29.264 598 393 12 11 599 12 588 4.77e-78 259
Msa0266210 AT2G26690.3 30.784 536 354 10 50 581 2 524 1.70e-77 256
Msa0266210 AT2G37900.1 29.273 550 356 12 24 563 34 560 4.76e-77 256
Msa0266210 AT3G45680.1 30.810 568 356 12 7 566 1 539 8.74e-77 255
Msa0266210 AT1G12110.1 31.771 576 361 15 21 579 19 579 2.08e-76 255
Msa0266210 AT1G22540.1 32.188 553 343 11 21 566 22 549 1.22e-75 252
Msa0266210 AT3G45700.1 30.319 564 346 12 11 566 5 529 1.33e-75 252
Msa0266210 AT1G33440.1 28.765 591 372 15 23 589 32 597 3.72e-74 249
Msa0266210 AT2G40460.1 30.127 551 352 12 36 575 33 561 6.80e-74 248
Msa0266210 AT5G46040.1 31.499 527 330 13 36 549 36 544 8.08e-74 248
Msa0266210 AT1G72125.1 30.185 540 344 9 36 566 38 553 1.14e-73 247
Msa0266210 AT5G13400.1 31.588 573 355 13 29 582 66 620 2.10e-73 248
Msa0266210 AT3G53960.1 27.750 609 401 14 10 594 6 599 3.42e-72 244
Msa0266210 AT2G37900.2 29.091 495 319 11 78 563 10 481 3.89e-71 238
Msa0266210 AT1G59740.1 29.298 570 365 15 11 563 23 571 8.80e-71 240
Msa0266210 AT1G32450.1 28.322 572 387 9 37 592 47 611 2.95e-70 239
Msa0266210 AT1G72140.1 28.929 560 340 12 25 566 32 551 4.85e-70 237
Msa0266210 AT2G02020.2 30.331 544 313 11 25 566 40 519 1.44e-69 235
Msa0266210 AT1G22550.1 29.948 581 362 13 2 566 5 556 1.39e-68 233
Msa0266210 AT5G46050.2 31.473 448 280 9 113 549 1 432 3.01e-67 228
Msa0266210 AT1G72120.1 29.720 572 348 12 11 566 16 549 5.62e-67 229
Msa0266210 AT1G22570.1 29.084 557 361 9 2 547 5 538 2.14e-66 228
Msa0266210 AT1G27040.2 28.650 548 359 10 29 565 25 551 7.37e-65 223
Msa0266210 AT1G27040.1 28.650 548 359 10 29 565 29 555 7.62e-65 224
Msa0266210 AT1G72130.1 28.261 552 342 10 25 566 23 530 2.10e-64 222
Msa0266210 AT4G21680.1 27.304 586 383 14 3 566 6 570 8.92e-64 221
Msa0266210 AT1G22570.2 29.537 518 331 9 41 547 7 501 1.35e-63 219
Msa0266210 AT3G45690.1 28.801 559 323 15 15 566 6 496 5.52e-62 214
Msa0266210 AT1G27040.3 28.625 538 352 10 39 565 7 523 6.66e-62 215
Msa0266210 AT5G19640.1 27.273 583 374 16 28 593 60 609 6.29e-58 206
Msa0266210 AT5G14940.1 25.965 570 370 12 25 572 5 544 7.15e-53 191
Msa0266210 AT1G69850.1 25.835 569 368 14 29 565 27 573 2.76e-52 189
Msa0266210 AT1G72130.2 28.406 433 266 9 144 566 14 412 1.86e-50 181
Msa0266210 AT1G72130.3 28.406 433 266 9 144 566 14 412 1.86e-50 181
Msa0266210 AT3G01350.1 25.694 576 374 17 25 572 5 554 2.72e-48 178
Msa0266210 AT5G62730.1 24.955 557 381 11 28 572 57 588 1.67e-47 176
Msa0266210 AT5G62730.2 24.954 549 375 11 36 572 6 529 5.38e-46 171
Msa0266210 AT3G25260.1 26.079 533 331 15 41 565 35 512 1.25e-44 167
Msa0266210 AT3G25280.1 25.385 520 335 14 52 565 46 518 4.71e-37 145
Msa0266210 AT2G38100.2 24.081 544 353 13 55 586 2 497 1.95e-28 120
Msa0266210 AT2G38100.1 24.081 544 353 13 55 586 18 513 5.83e-28 118
Msa0266210 AT2G38100.3 24.081 544 353 13 55 586 24 519 6.47e-28 118

Find 145 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCAAAGCTCTATTGTTAT+TGG 0.116841 2_2:-66694564 None:intergenic
CTTTGTAATAAAACTCATTT+TGG 0.123205 2_2:-66695598 None:intergenic
GTCATTTCGACAAATATTTA+TGG 0.147038 2_2:+66695774 Msa0266210:CDS
GATCATCTTGGTTGGAAAAT+TGG 0.157074 2_2:+66694662 Msa0266210:CDS
ACTCGTGAAGGCCGACTATT+AGG 0.208164 2_2:+66696452 Msa0266210:three_prime_UTR
TTATCTTTGTAATACTTATA+TGG 0.221781 2_2:+66695306 Msa0266210:CDS
GCTGAGGCATTCAATGTTAT+TGG 0.226194 2_2:+66695575 Msa0266210:CDS
AAATAAAGCTTGTGTTATTC+AGG 0.227714 2_2:+66695046 Msa0266210:CDS
CAATGGAATAACTTTAATAA+TGG 0.287573 2_2:-66695153 None:intergenic
GCTTGCACCTTCACTTTGTT+TGG 0.290635 2_2:+66695544 Msa0266210:CDS
TTTATTGCAGATTCTTATAT+TGG 0.292916 2_2:+66693432 Msa0266210:CDS
CTTGGTTGGAAAATTGGTTT+TGG 0.297432 2_2:+66694668 Msa0266210:CDS
TTCAAGATTAGTGAAGAAAA+TGG 0.297883 2_2:+66696031 Msa0266210:CDS
CAAGTAGGAGGCTGCGTCGC+TGG 0.300060 2_2:-66694395 None:intergenic
ATTTCATGTTCTTTAGCATT+TGG 0.304538 2_2:+66694512 Msa0266210:CDS
TTAGTATGCAGTTGGGCTTA+TGG 0.310648 2_2:+66695836 Msa0266210:CDS
GCTGTCATAGCAGCTCTATT+TGG 0.312595 2_2:+66694623 Msa0266210:CDS
GATAAGATACCAATGATAAA+AGG 0.324542 2_2:-66693165 None:intergenic
TGAAATGATATGTCTGTCTA+AGG 0.326067 2_2:-66695240 None:intergenic
GTTATTCCATTGTGGTCAAC+AGG 0.337103 2_2:+66695164 Msa0266210:CDS
AAGGAGAAAGAAAGCAATTC+AGG 0.340505 2_2:+66695472 Msa0266210:CDS
AGGTTCTATTATCAGTTTCC+TGG 0.349967 2_2:+66693476 Msa0266210:CDS
GCGTTAATTCTGATAGGAAT+TGG 0.359891 2_2:+66694479 Msa0266210:CDS
TTTGCTGATATACAGCCTTC+AGG 0.359961 2_2:-66694428 None:intergenic
GAAACACTAGACATAGTCTT+TGG 0.360014 2_2:-66695626 None:intergenic
ATTAACATCGGAGGCTCGTT+TGG 0.361174 2_2:+66695200 Msa0266210:CDS
CAACATGATATTGTATTTGA+TGG 0.361317 2_2:+66693323 Msa0266210:CDS
GCACCTTCACTTTGTTTGGC+TGG 0.361719 2_2:+66695548 Msa0266210:CDS
CCTCTTATCTTTGATGCTAA+AGG 0.364995 2_2:-66695356 None:intergenic
TCATTTCGACAAATATTTAT+GGG 0.366923 2_2:+66695775 Msa0266210:CDS
AAAAGAAGACACCAAGTTTC+CGG 0.373199 2_2:-66695678 None:intergenic
AGTGTTTCTTCAGCACTCTC+TGG 0.375458 2_2:+66695641 Msa0266210:CDS
CTAACCTTGTCATCAATTTG+TGG 0.379224 2_2:-66695941 None:intergenic
TTCCAATAACAATAGAGCTT+TGG 0.382182 2_2:+66694562 Msa0266210:CDS
GACATGTGGTTCCCACGATT+TGG 0.391714 2_2:-66696194 None:intergenic
AGACCACCCTTGCTTCTTTG+TGG 0.395960 2_2:-66693132 None:intergenic
TCCAAAGTGAGTGAAGAAAA+TGG 0.396852 2_2:+66695878 Msa0266210:CDS
CGATTCCTAGGTGTTGGAAT+AGG 0.398985 2_2:+66693456 Msa0266210:CDS
TCTTATATTGGTCGATTCCT+AGG 0.404111 2_2:+66693444 Msa0266210:CDS
TTCTTCAGCACTCTCTGGAT+TGG 0.405295 2_2:+66695646 Msa0266210:CDS
CCTTTAGCATCAAAGATAAG+AGG 0.419532 2_2:+66695356 Msa0266210:CDS
ATCAAATACAATATCATGTT+GGG 0.422265 2_2:-66693321 None:intergenic
ATCCATGTGTCATAATCTTA+AGG 0.424248 2_2:-66696392 None:intergenic
AGGCTGCGTCGCTGGGATCA+TGG 0.429972 2_2:-66694387 None:intergenic
CTTTGGAAATATTCTTCACT+TGG 0.431586 2_2:+66694579 Msa0266210:CDS
ATCAGCAAAACCAGGTCAAA+TGG 0.449605 2_2:+66694442 Msa0266210:CDS
CCAAGTCCCATTCTTATCTT+CGG 0.449902 2_2:-66695398 None:intergenic
TGTATTATTTAGTATGCAGT+TGG 0.452225 2_2:+66695828 Msa0266210:CDS
CTCTCTGCGTTAATTCTGAT+AGG 0.460782 2_2:+66694473 Msa0266210:CDS
GGCAATGGCTGCCGGAAACT+TGG 0.462855 2_2:+66695667 Msa0266210:CDS
TGCTGCTGATGAAGAAGAAA+TGG 0.464327 2_2:+66693095 Msa0266210:CDS
CCGAAGATAAGAATGGGACT+TGG 0.464562 2_2:+66695398 Msa0266210:CDS
AAGTAGGAGGCTGCGTCGCT+GGG 0.464764 2_2:-66694394 None:intergenic
AAATATTTATGGGTTATAGC+TGG 0.467548 2_2:+66695785 Msa0266210:CDS
ACTTCAAGTGGAGGAAAAGA+TGG 0.470588 2_2:+66695725 Msa0266210:CDS
TAGTGAAGAAAATGGCTTGA+AGG 0.470983 2_2:+66696039 Msa0266210:CDS
GCAATAAAAGCAGCAACAAC+AGG 0.471001 2_2:-66693417 None:intergenic
AGGAGGAATAGTACGATAGA+AGG 0.477176 2_2:+66696059 Msa0266210:exon
ATTCTGATAGGAATTGGAAA+TGG 0.478772 2_2:+66694485 Msa0266210:CDS
TCTGGATTGGCAATGGCTGC+CGG 0.481828 2_2:+66695659 Msa0266210:CDS
TTGTTCCAACTGATAGACTA+AGG 0.483967 2_2:+66694888 Msa0266210:CDS
TGAATTCAAGAATGGTGGTC+AGG 0.484071 2_2:+66695997 Msa0266210:CDS
ATTGGTCGATTCCTAGGTGT+TGG 0.484458 2_2:+66693450 Msa0266210:CDS
AGGATGGCAAGTGCTGGACT+TGG 0.485050 2_2:+66693297 Msa0266210:CDS
CACATGTCACATGTGTTTCA+CGG 0.485689 2_2:+66696209 Msa0266210:three_prime_UTR
TGAGATTAATTTCCAAATCG+TGG 0.488271 2_2:+66696182 Msa0266210:three_prime_UTR
CTTGCTAGGATGGCAAGTGC+TGG 0.493484 2_2:+66693291 Msa0266210:CDS
CTCGTGAAGGCCGACTATTA+GGG 0.495249 2_2:+66696453 Msa0266210:three_prime_UTR
CCTGCTAGAAAGAATGTCAT+TGG 0.495358 2_2:-66696114 None:intergenic
TAATGAGGCACTTGCTAGGA+TGG 0.505197 2_2:+66693281 Msa0266210:CDS
GTATTATTTAGTATGCAGTT+GGG 0.508088 2_2:+66695829 Msa0266210:CDS
ATCAGTCCGAAGATAAGAAT+GGG 0.508597 2_2:+66695392 Msa0266210:CDS
CTTCTCATATCCTCTGCAGC+TGG 0.510191 2_2:+66693384 Msa0266210:CDS
CCAATGACATTCTTTCTAGC+AGG 0.512517 2_2:+66696114 Msa0266210:three_prime_UTR
AAGTTCAAACTTTGAAGTAC+CGG 0.513148 2_2:+66695262 Msa0266210:CDS
CATCAAATACAATATCATGT+TGG 0.518744 2_2:-66693322 None:intergenic
GATATAAGCATGAGTGCTGC+TGG 0.520880 2_2:-66694695 None:intergenic
TATCAGTCCGAAGATAAGAA+TGG 0.521040 2_2:+66695391 Msa0266210:CDS
ATCTTCGGACTGATACTCAC+TGG 0.523009 2_2:-66695383 None:intergenic
TGGTATGTCTCTGAATGTAT+TGG 0.523497 2_2:-66696094 None:intergenic
GAGATTAATTTCCAAATCGT+GGG 0.530007 2_2:+66696183 Msa0266210:three_prime_UTR
AGCACTCTCTGGATTGGCAA+TGG 0.530645 2_2:+66695652 Msa0266210:CDS
AACATGATATTGTATTTGAT+GGG 0.530924 2_2:+66693324 Msa0266210:CDS
CAAAGAACCAGCTTGCTCAC+TGG 0.541714 2_2:+66694764 Msa0266210:CDS
CTTTAGCATCAAAGATAAGA+GGG 0.548696 2_2:+66695357 Msa0266210:CDS
CTGATAGGAATTGGAAATGG+TGG 0.549275 2_2:+66694488 Msa0266210:CDS
ATTGAAAACACTACTTCAAG+TGG 0.549303 2_2:+66695713 Msa0266210:CDS
TTGTTTGGCTGGTATAGCTG+AGG 0.550780 2_2:+66695559 Msa0266210:CDS
TACGATAGAAGGCTTATAGT+TGG 0.551668 2_2:+66696070 Msa0266210:three_prime_UTR
AAACTAATAATTTATGAAGG+AGG 0.553015 2_2:-66696276 None:intergenic
ATTTATTGTTGAACCATCTG+AGG 0.553024 2_2:-66695087 None:intergenic
CAATCCACAAATTGATGACA+AGG 0.554131 2_2:+66695937 Msa0266210:CDS
AGTAACATTGCCATTTGACC+TGG 0.557875 2_2:-66694452 None:intergenic
ATATAAGTATTACAAAGATA+AGG 0.558130 2_2:-66695304 None:intergenic
ATGGTTCAACAATAAATCGT+TGG 0.560017 2_2:+66695093 Msa0266210:CDS
CAGCTAATGAGGCACTTGCT+AGG 0.560867 2_2:+66693277 Msa0266210:intron
GAGTAGCTGTAGCAAGATGA+AGG 0.565218 2_2:-66693356 None:intergenic
ATATCCAAGATCATCTTGGT+TGG 0.566372 2_2:+66694654 Msa0266210:CDS
ACATGTCACATGTGTTTCAC+GGG 0.566506 2_2:+66696210 Msa0266210:three_prime_UTR
GGTGGATTGCTGCAAGTAGG+AGG 0.569731 2_2:-66694407 None:intergenic
GAGTTAACTGAATTCAAGAA+TGG 0.573785 2_2:+66695989 Msa0266210:CDS
TCAAACTTTGAAGTACCGGC+AGG 0.576815 2_2:+66695266 Msa0266210:CDS
TTGGATACTTGATCAGCTGT+AGG 0.577217 2_2:-66695860 None:intergenic
TGCAAAACCAGTGAGCAAGC+TGG 0.577546 2_2:-66694771 None:intergenic
GTATATATCCAAGATCATCT+TGG 0.577864 2_2:+66694650 Msa0266210:CDS
TGAAGAAAATGGCTTGAAGG+AGG 0.581996 2_2:+66696042 Msa0266210:CDS
CGAAGATAAGAATGGGACTT+GGG 0.582353 2_2:+66695399 Msa0266210:CDS
GATTTCTGATAATATTAACA+AGG 0.582713 2_2:+66695751 Msa0266210:CDS
TAGTGATGAAACTAGTTCAA+AGG 0.587940 2_2:+66695961 Msa0266210:CDS
TGTGAAATTTCCAGCTGCAG+AGG 0.589353 2_2:-66693394 None:intergenic
AGAAAGAAAGCAATTCAGGC+AGG 0.591725 2_2:+66695476 Msa0266210:CDS
TTATTAAAGTTATTCCATTG+TGG 0.594692 2_2:+66695156 Msa0266210:CDS
GAGTGAAGAAAATGGTTCCA+AGG 0.598642 2_2:+66695886 Msa0266210:CDS
CTTCAAGTGGAGGAAAAGAT+GGG 0.602416 2_2:+66695726 Msa0266210:CDS
GATACCAATGATAAAAGGCA+TGG 0.603181 2_2:-66693160 None:intergenic
GTATACCTTAGTCTATCAGT+TGG 0.607004 2_2:-66694893 None:intergenic
GGCTGTATATCAGCAAAACC+AGG 0.607418 2_2:+66694434 Msa0266210:CDS
TGCTATGACAGCTATAGTTG+TGG 0.614444 2_2:-66694612 None:intergenic
TTTATGAAGGAGGAGTGCTA+TGG 0.614803 2_2:-66696266 None:intergenic
GAACAAGATATAGCCTCAGA+TGG 0.621248 2_2:+66695074 Msa0266210:CDS
GCTGATATACAGCCTTCAGG+TGG 0.623699 2_2:-66694425 None:intergenic
TTAACTGAATTCAAGAATGG+TGG 0.626429 2_2:+66695992 Msa0266210:CDS
AATTAGTATGATACTCGTGA+AGG 0.628108 2_2:+66696440 Msa0266210:three_prime_UTR
AGCAAGAAAGAATAAGACAG+TGG 0.634801 2_2:-66694717 None:intergenic
ATTATAGTAAAAGATCCTGC+CGG 0.635315 2_2:-66695281 None:intergenic
GAAAACACTACTTCAAGTGG+AGG 0.636406 2_2:+66695716 Msa0266210:CDS
TTATTCCATTGTGGTCAACA+GGG 0.637429 2_2:+66695165 Msa0266210:CDS
TGTCATGACACCCTAATAGT+CGG 0.637642 2_2:-66696463 None:intergenic
ACTTGCAGCAATCCACCTGA+AGG 0.637785 2_2:+66694413 Msa0266210:CDS
ATGATGGTAAAATTCAGGTG+AGG 0.641850 2_2:-66694846 None:intergenic
GCGATCCCTGTTGACCACAA+TGG 0.645059 2_2:-66695170 None:intergenic
ATCGCAATGTCTATTAACAT+CGG 0.651661 2_2:+66695188 Msa0266210:CDS
ATTTCTGATAATATTAACAA+GGG 0.652732 2_2:+66695752 Msa0266210:CDS
TCAGGTGGATTGCTGCAAGT+AGG 0.653513 2_2:-66694410 None:intergenic
ATACCAGCCAAACAAAGTGA+AGG 0.655978 2_2:-66695551 None:intergenic
ACTATTAGGGTGTCATGACA+CGG 0.659868 2_2:+66696466 Msa0266210:three_prime_UTR
AAACCACAAAGAAGCAAGGG+TGG 0.667497 2_2:+66693129 Msa0266210:CDS
GACCTTAAGATTATGACACA+TGG 0.668498 2_2:+66696390 Msa0266210:three_prime_UTR
GCAATGTCTATTAACATCGG+AGG 0.673604 2_2:+66695191 Msa0266210:CDS
CAAGTGGAGGAAAAGATGGG+TGG 0.675884 2_2:+66695729 Msa0266210:CDS
TATAGGGAATGTCAATGCTG+TGG 0.699156 2_2:+66694357 Msa0266210:intron
TGAAGAAAATGGTTCCAAGG+AGG 0.705179 2_2:+66695889 Msa0266210:CDS
TAGAACCTATTCCAACACCT+AGG 0.705760 2_2:-66693461 None:intergenic
CGTGAAACACATGTGACATG+TGG 0.714313 2_2:-66696208 None:intergenic
TGTTGAAAATGTCTGCAATG+TGG 0.749104 2_2:+66695522 Msa0266210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTTTATTTATTATTT+TGG + chr2_2:66696319-66696338 Msa0266210:three_prime_UTR 0.0%
!! AGATGTATATATATATATAT+AGG - chr2_2:66693002-66693021 None:intergenic 10.0%
!! TTCTTTCAAAAAAAAAAAAA+AGG - chr2_2:66693808-66693827 None:intergenic 10.0%
!! TGATTAATTAAAGATATATT+AGG + chr2_2:66693896-66693915 Msa0266210:intron 10.0%
!!! AATTAATATTCTGAAATTAT+TGG + chr2_2:66694277-66694296 Msa0266210:intron 10.0%
!! AAAAAACTAATAATTTATGA+AGG - chr2_2:66696282-66696301 None:intergenic 10.0%
!! TTAGATACCAATAAAAAAAA+TGG + chr2_2:66693044-66693063 Msa0266210:exon 15.0%
!! AATGAAAATATAATATTACC+AGG - chr2_2:66693497-66693516 None:intergenic 15.0%
!! ATATTATTAAGTCCAATTAT+GGG + chr2_2:66693579-66693598 Msa0266210:intron 15.0%
!! TATGAAAAAGAATCATATAA+AGG + chr2_2:66694221-66694240 Msa0266210:intron 15.0%
!!! AATTTTCTTTTCTTTTAACT+TGG - chr2_2:66694544-66694563 None:intergenic 15.0%
!! ATATAAGTATTACAAAGATA+AGG - chr2_2:66695307-66695326 None:intergenic 15.0%
!! TTATCTTTGTAATACTTATA+TGG + chr2_2:66695306-66695325 Msa0266210:CDS 15.0%
!! ATTTCTGATAATATTAACAA+GGG + chr2_2:66695752-66695771 Msa0266210:CDS 15.0%
!!! AGTTGTTATTTTAAATTCTT+AGG + chr2_2:66696348-66696367 Msa0266210:three_prime_UTR 15.0%
!! ACCAATAAAAAAAATGGATA+AGG + chr2_2:66693050-66693069 Msa0266210:exon 20.0%
!!! TCCTTATCCATTTTTTTTAT+TGG - chr2_2:66693054-66693073 None:intergenic 20.0%
!!! CTTTATTTTTACTTTGAATG+AGG + chr2_2:66693214-66693233 Msa0266210:intron 20.0%
!! ATCAAATACAATATCATGTT+GGG - chr2_2:66693324-66693343 None:intergenic 20.0%
!! AACATGATATTGTATTTGAT+GGG + chr2_2:66693324-66693343 Msa0266210:CDS 20.0%
!! TTTATTGCAGATTCTTATAT+TGG + chr2_2:66693432-66693451 Msa0266210:CDS 20.0%
!!! AAAAGATAAGAAAAGTATCA+TGG - chr2_2:66693546-66693565 None:intergenic 20.0%
!! CATATTATTAAGTCCAATTA+TGG + chr2_2:66693578-66693597 Msa0266210:intron 20.0%
!! CTCGAATATTTAATTGATAT+AGG - chr2_2:66694111-66694130 None:intergenic 20.0%
!!! TAATTTTAAAAAGGAATCTG+AGG - chr2_2:66694176-66694195 None:intergenic 20.0%
!! ATTGGTATAATGAAAAAAGT+TGG + chr2_2:66694295-66694314 Msa0266210:intron 20.0%
!! AAACAAACAAACAAAAAAGA+AGG - chr2_2:66694328-66694347 None:intergenic 20.0%
!!! TTTGTTTGTTTGTTGTTATA+GGG + chr2_2:66694341-66694360 Msa0266210:intron 20.0%
!!! TGAAAGTTTTCTGTTTTTAT+AGG - chr2_2:66694813-66694832 None:intergenic 20.0%
!!! TTTTTATGATGGTAAAATTC+AGG - chr2_2:66694854-66694873 None:intergenic 20.0%
!!! TGTTATTTGAACAAAAATTC+AGG + chr2_2:66694970-66694989 Msa0266210:intron 20.0%
!! TGAAATCAAACGTTTAATAT+GGG - chr2_2:66695013-66695032 None:intergenic 20.0%
!! ATGAAATCAAACGTTTAATA+TGG - chr2_2:66695014-66695033 None:intergenic 20.0%
!! CAATGGAATAACTTTAATAA+TGG - chr2_2:66695156-66695175 None:intergenic 20.0%
!! TTATTAAAGTTATTCCATTG+TGG + chr2_2:66695156-66695175 Msa0266210:CDS 20.0%
!!! GTTTTTTAATTTTCTTCACT+TGG + chr2_2:66695424-66695443 Msa0266210:CDS 20.0%
!!! CTTTGTAATAAAACTCATTT+TGG - chr2_2:66695601-66695620 None:intergenic 20.0%
!! GATTTCTGATAATATTAACA+AGG + chr2_2:66695751-66695770 Msa0266210:CDS 20.0%
!! TCATTTCGACAAATATTTAT+GGG + chr2_2:66695775-66695794 Msa0266210:CDS 20.0%
!! AAACTAATAATTTATGAAGG+AGG - chr2_2:66696279-66696298 None:intergenic 20.0%
! GATAAGATACCAATGATAAA+AGG - chr2_2:66693168-66693187 None:intergenic 25.0%
! CATCAAATACAATATCATGT+TGG - chr2_2:66693325-66693344 None:intergenic 25.0%
! CAACATGATATTGTATTTGA+TGG + chr2_2:66693323-66693342 Msa0266210:CDS 25.0%
! GTATCATGGAATGAAAAAAA+AGG - chr2_2:66693532-66693551 None:intergenic 25.0%
! ATACAATTTACTCCCATAAT+TGG - chr2_2:66693594-66693613 None:intergenic 25.0%
! TCAAAATGTGACAATTCAAA+AGG - chr2_2:66693673-66693692 None:intergenic 25.0%
! TGCAAAAGTGACAATTATAA+AGG + chr2_2:66693712-66693731 Msa0266210:intron 25.0%
!!! GTTTGTTTGTTTGTTGTTAT+AGG + chr2_2:66694340-66694359 Msa0266210:intron 25.0%
! ATTTCATGTTCTTTAGCATT+TGG + chr2_2:66694512-66694531 Msa0266210:CDS 25.0%
!! TGTGTAATTTTCACATAAAG+AGG - chr2_2:66694746-66694765 None:intergenic 25.0%
! ATATGCAAAAGCTATAAAGA+TGG - chr2_2:66694918-66694937 None:intergenic 25.0%
!!! AAACGTTTGATTTCATTTTC+AGG + chr2_2:66695018-66695037 Msa0266210:intron 25.0%
!! AAATAAAGCTTGTGTTATTC+AGG + chr2_2:66695046-66695065 Msa0266210:CDS 25.0%
!! GGATTTTTGAATAATACTCA+TGG + chr2_2:66695497-66695516 Msa0266210:CDS 25.0%
! GTCATTTCGACAAATATTTA+TGG + chr2_2:66695774-66695793 Msa0266210:CDS 25.0%
!! AAATATTTATGGGTTATAGC+TGG + chr2_2:66695785-66695804 Msa0266210:CDS 25.0%
! TGTATTATTTAGTATGCAGT+TGG + chr2_2:66695828-66695847 Msa0266210:CDS 25.0%
! GTATTATTTAGTATGCAGTT+GGG + chr2_2:66695829-66695848 Msa0266210:CDS 25.0%
! TTCAAGATTAGTGAAGAAAA+TGG + chr2_2:66696031-66696050 Msa0266210:CDS 25.0%
!!! AGGTTTCTAAGATTTTCTTA+TGG + chr2_2:66696368-66696387 Msa0266210:three_prime_UTR 25.0%
TGACAATTATAAAGGAACTG+AGG + chr2_2:66693720-66693739 Msa0266210:intron 30.0%
GACAATTATAAAGGAACTGA+GGG + chr2_2:66693721-66693740 Msa0266210:intron 30.0%
TAATCATACTTCAATGCAGA+AGG + chr2_2:66693753-66693772 Msa0266210:intron 30.0%
! AGAAGCATATATGTATAACC+TGG + chr2_2:66693824-66693843 Msa0266210:intron 30.0%
AATCAATATGTTGTAGATCC+AGG - chr2_2:66693845-66693864 None:intergenic 30.0%
GAACACTTGAATTGAATCTA+TGG + chr2_2:66693918-66693937 Msa0266210:intron 30.0%
! ATCTGAAACATAAAGAGAGA+CGG + chr2_2:66693963-66693982 Msa0266210:intron 30.0%
AGAAAGAATCACAAATCAAG+GGG - chr2_2:66694007-66694026 None:intergenic 30.0%
GAGAAAGAATCACAAATCAA+GGG - chr2_2:66694008-66694027 None:intergenic 30.0%
TGAGAAAGAATCACAAATCA+AGG - chr2_2:66694009-66694028 None:intergenic 30.0%
TTTGTGATTCTTTCTCAACT+AGG + chr2_2:66694012-66694031 Msa0266210:intron 30.0%
TTGAATATACGTACCAAGTT+TGG - chr2_2:66694259-66694278 None:intergenic 30.0%
ATTCTGATAGGAATTGGAAA+TGG + chr2_2:66694485-66694504 Msa0266210:CDS 30.0%
TTCCAATAACAATAGAGCTT+TGG + chr2_2:66694562-66694581 Msa0266210:CDS 30.0%
TTCCAAAGCTCTATTGTTAT+TGG - chr2_2:66694567-66694586 None:intergenic 30.0%
! CTTTGGAAATATTCTTCACT+TGG + chr2_2:66694579-66694598 Msa0266210:CDS 30.0%
GTATATATCCAAGATCATCT+TGG + chr2_2:66694650-66694669 Msa0266210:CDS 30.0%
!!! GATCTGAGTCTTTTTTATGA+TGG - chr2_2:66694865-66694884 None:intergenic 30.0%
ATTTATTGTTGAACCATCTG+AGG - chr2_2:66695090-66695109 None:intergenic 30.0%
ATGGTTCAACAATAAATCGT+TGG + chr2_2:66695093-66695112 Msa0266210:CDS 30.0%
ATCGCAATGTCTATTAACAT+CGG + chr2_2:66695188-66695207 Msa0266210:CDS 30.0%
TGAAATGATATGTCTGTCTA+AGG - chr2_2:66695243-66695262 None:intergenic 30.0%
!! AAGTTCAAACTTTGAAGTAC+CGG + chr2_2:66695262-66695281 Msa0266210:CDS 30.0%
ATTATAGTAAAAGATCCTGC+CGG - chr2_2:66695284-66695303 None:intergenic 30.0%
CTTTAGCATCAAAGATAAGA+GGG + chr2_2:66695357-66695376 Msa0266210:CDS 30.0%
!! CAGCAATTTTTGAGAGTATA+AGG + chr2_2:66695453-66695472 Msa0266210:CDS 30.0%
ATTGAAAACACTACTTCAAG+TGG + chr2_2:66695713-66695732 Msa0266210:CDS 30.0%
TAGTGATGAAACTAGTTCAA+AGG + chr2_2:66695961-66695980 Msa0266210:CDS 30.0%
GAGTTAACTGAATTCAAGAA+TGG + chr2_2:66695989-66696008 Msa0266210:CDS 30.0%
TTAACTGAATTCAAGAATGG+TGG + chr2_2:66695992-66696011 Msa0266210:CDS 30.0%
TGAGATTAATTTCCAAATCG+TGG + chr2_2:66696182-66696201 Msa0266210:three_prime_UTR 30.0%
GAGATTAATTTCCAAATCGT+GGG + chr2_2:66696183-66696202 Msa0266210:three_prime_UTR 30.0%
ATCCATGTGTCATAATCTTA+AGG - chr2_2:66696395-66696414 None:intergenic 30.0%
AATTAGTATGATACTCGTGA+AGG + chr2_2:66696440-66696459 Msa0266210:three_prime_UTR 30.0%
ACAAAAACCACAAAGAAGCA+AGG + chr2_2:66693125-66693144 Msa0266210:CDS 35.0%
CAAAAACCACAAAGAAGCAA+GGG + chr2_2:66693126-66693145 Msa0266210:CDS 35.0%
GATACCAATGATAAAAGGCA+TGG - chr2_2:66693163-66693182 None:intergenic 35.0%
!!! TTTTGTTGTTGCAGCTAATG+AGG + chr2_2:66693266-66693285 Msa0266210:intron 35.0%
! TCTTATATTGGTCGATTCCT+AGG + chr2_2:66693444-66693463 Msa0266210:CDS 35.0%
AGGTTCTATTATCAGTTTCC+TGG + chr2_2:66693476-66693495 Msa0266210:CDS 35.0%
GACAATTCAAAAGGAAGAGA+GGG - chr2_2:66693664-66693683 None:intergenic 35.0%
TGACAATTCAAAAGGAAGAG+AGG - chr2_2:66693665-66693684 None:intergenic 35.0%
AATCTATGGCTAAAGTCTGT+GGG + chr2_2:66693932-66693951 Msa0266210:intron 35.0%
ATTGTCTTGCCTAAGACATA+TGG - chr2_2:66694041-66694060 None:intergenic 35.0%
GAAAAAAGTTCCACCAAACT+TGG + chr2_2:66694243-66694262 Msa0266210:intron 35.0%
AATATACGTACCAAGTTTGG+TGG - chr2_2:66694256-66694275 None:intergenic 35.0%
GCGTTAATTCTGATAGGAAT+TGG + chr2_2:66694479-66694498 Msa0266210:CDS 35.0%
ATATCCAAGATCATCTTGGT+TGG + chr2_2:66694654-66694673 Msa0266210:CDS 35.0%
! TTTTCCAACCAAGATGATCT+TGG - chr2_2:66694661-66694680 None:intergenic 35.0%
GATCATCTTGGTTGGAAAAT+TGG + chr2_2:66694662-66694681 Msa0266210:CDS 35.0%
!! CTTGGTTGGAAAATTGGTTT+TGG + chr2_2:66694668-66694687 Msa0266210:CDS 35.0%
AGCAAGAAAGAATAAGACAG+TGG - chr2_2:66694720-66694739 None:intergenic 35.0%
! AATTCAGGTGAGGTTTTCAA+TGG - chr2_2:66694839-66694858 None:intergenic 35.0%
ATGATGGTAAAATTCAGGTG+AGG - chr2_2:66694849-66694868 None:intergenic 35.0%
TTGTTCCAACTGATAGACTA+AGG + chr2_2:66694888-66694907 Msa0266210:CDS 35.0%
GTATACCTTAGTCTATCAGT+TGG - chr2_2:66694896-66694915 None:intergenic 35.0%
TTATTCCATTGTGGTCAACA+GGG + chr2_2:66695165-66695184 Msa0266210:CDS 35.0%
CCTCTTATCTTTGATGCTAA+AGG - chr2_2:66695359-66695378 None:intergenic 35.0%
CCTTTAGCATCAAAGATAAG+AGG + chr2_2:66695356-66695375 Msa0266210:CDS 35.0%
TATCAGTCCGAAGATAAGAA+TGG + chr2_2:66695391-66695410 Msa0266210:CDS 35.0%
ATCAGTCCGAAGATAAGAAT+GGG + chr2_2:66695392-66695411 Msa0266210:CDS 35.0%
AAGGAGAAAGAAAGCAATTC+AGG + chr2_2:66695472-66695491 Msa0266210:CDS 35.0%
TGTTGAAAATGTCTGCAATG+TGG + chr2_2:66695522-66695541 Msa0266210:CDS 35.0%
GAAACACTAGACATAGTCTT+TGG - chr2_2:66695629-66695648 None:intergenic 35.0%
AAAAGAAGACACCAAGTTTC+CGG - chr2_2:66695681-66695700 None:intergenic 35.0%
TCCAAAGTGAGTGAAGAAAA+TGG + chr2_2:66695878-66695897 Msa0266210:CDS 35.0%
! ACCATTTTCTTCACTCACTT+TGG - chr2_2:66695882-66695901 None:intergenic 35.0%
! TTCAGTTGAATTTTCCTCCT+TGG - chr2_2:66695906-66695925 None:intergenic 35.0%
! CAATCCACAAATTGATGACA+AGG + chr2_2:66695937-66695956 Msa0266210:CDS 35.0%
CTAACCTTGTCATCAATTTG+TGG - chr2_2:66695944-66695963 None:intergenic 35.0%
TAGTGAAGAAAATGGCTTGA+AGG + chr2_2:66696039-66696058 Msa0266210:CDS 35.0%
TACGATAGAAGGCTTATAGT+TGG + chr2_2:66696070-66696089 Msa0266210:three_prime_UTR 35.0%
TGGTATGTCTCTGAATGTAT+TGG - chr2_2:66696097-66696116 None:intergenic 35.0%
! TCTAGCAGGAACTCTTTTAT+TGG + chr2_2:66696128-66696147 Msa0266210:three_prime_UTR 35.0%
GACCTTAAGATTATGACACA+TGG + chr2_2:66696390-66696409 Msa0266210:three_prime_UTR 35.0%
TGCTGCTGATGAAGAAGAAA+TGG + chr2_2:66693095-66693114 Msa0266210:CDS 40.0%
! GTCACCATGCCTTTTATCAT+TGG + chr2_2:66693156-66693175 Msa0266210:CDS 40.0%
GCAATAAAAGCAGCAACAAC+AGG - chr2_2:66693420-66693439 None:intergenic 40.0%
TAGAACCTATTCCAACACCT+AGG - chr2_2:66693464-66693483 None:intergenic 40.0%
GAATCTATGGCTAAAGTCTG+TGG + chr2_2:66693931-66693950 Msa0266210:intron 40.0%
ACTAGGACTCCATATGTCTT+AGG + chr2_2:66694029-66694048 Msa0266210:intron 40.0%
TATAGGGAATGTCAATGCTG+TGG + chr2_2:66694357-66694376 Msa0266210:intron 40.0%
TTTGCTGATATACAGCCTTC+AGG - chr2_2:66694431-66694450 None:intergenic 40.0%
ATCAGCAAAACCAGGTCAAA+TGG + chr2_2:66694442-66694461 Msa0266210:CDS 40.0%
! AGTAACATTGCCATTTGACC+TGG - chr2_2:66694455-66694474 None:intergenic 40.0%
CTCTCTGCGTTAATTCTGAT+AGG + chr2_2:66694473-66694492 Msa0266210:CDS 40.0%
CTGATAGGAATTGGAAATGG+TGG + chr2_2:66694488-66694507 Msa0266210:CDS 40.0%
TGCTATGACAGCTATAGTTG+TGG - chr2_2:66694615-66694634 None:intergenic 40.0%
GAACAAGATATAGCCTCAGA+TGG + chr2_2:66695074-66695093 Msa0266210:CDS 40.0%
GTTATTCCATTGTGGTCAAC+AGG + chr2_2:66695164-66695183 Msa0266210:CDS 40.0%
GCAATGTCTATTAACATCGG+AGG + chr2_2:66695191-66695210 Msa0266210:CDS 40.0%
CCAAGTCCCATTCTTATCTT+CGG - chr2_2:66695401-66695420 None:intergenic 40.0%
CGAAGATAAGAATGGGACTT+GGG + chr2_2:66695399-66695418 Msa0266210:CDS 40.0%
AGAAAGAAAGCAATTCAGGC+AGG + chr2_2:66695476-66695495 Msa0266210:CDS 40.0%
ATACCAGCCAAACAAAGTGA+AGG - chr2_2:66695554-66695573 None:intergenic 40.0%
! GCTGAGGCATTCAATGTTAT+TGG + chr2_2:66695575-66695594 Msa0266210:CDS 40.0%
GAAAACACTACTTCAAGTGG+AGG + chr2_2:66695716-66695735 Msa0266210:CDS 40.0%
ACTTCAAGTGGAGGAAAAGA+TGG + chr2_2:66695725-66695744 Msa0266210:CDS 40.0%
CTTCAAGTGGAGGAAAAGAT+GGG + chr2_2:66695726-66695745 Msa0266210:CDS 40.0%
TTAGTATGCAGTTGGGCTTA+TGG + chr2_2:66695836-66695855 Msa0266210:CDS 40.0%
TTGGATACTTGATCAGCTGT+AGG - chr2_2:66695863-66695882 None:intergenic 40.0%
GAGTGAAGAAAATGGTTCCA+AGG + chr2_2:66695886-66695905 Msa0266210:CDS 40.0%
TGAAGAAAATGGTTCCAAGG+AGG + chr2_2:66695889-66695908 Msa0266210:CDS 40.0%
TGAATTCAAGAATGGTGGTC+AGG + chr2_2:66695997-66696016 Msa0266210:CDS 40.0%
TGAAGAAAATGGCTTGAAGG+AGG + chr2_2:66696042-66696061 Msa0266210:CDS 40.0%
AGGAGGAATAGTACGATAGA+AGG + chr2_2:66696059-66696078 Msa0266210:exon 40.0%
CCTGCTAGAAAGAATGTCAT+TGG - chr2_2:66696117-66696136 None:intergenic 40.0%
! CCAATGACATTCTTTCTAGC+AGG + chr2_2:66696114-66696133 Msa0266210:three_prime_UTR 40.0%
CACATGTCACATGTGTTTCA+CGG + chr2_2:66696209-66696228 Msa0266210:three_prime_UTR 40.0%
ACATGTCACATGTGTTTCAC+GGG + chr2_2:66696210-66696229 Msa0266210:three_prime_UTR 40.0%
!! TTTATGAAGGAGGAGTGCTA+TGG - chr2_2:66696269-66696288 None:intergenic 40.0%
TGTCATGACACCCTAATAGT+CGG - chr2_2:66696466-66696485 None:intergenic 40.0%
AAACCACAAAGAAGCAAGGG+TGG + chr2_2:66693129-66693148 Msa0266210:CDS 45.0%
! TAATGAGGCACTTGCTAGGA+TGG + chr2_2:66693281-66693300 Msa0266210:CDS 45.0%
GAGTAGCTGTAGCAAGATGA+AGG - chr2_2:66693359-66693378 None:intergenic 45.0%
TGTGAAATTTCCAGCTGCAG+AGG - chr2_2:66693397-66693416 None:intergenic 45.0%
! ATTGGTCGATTCCTAGGTGT+TGG + chr2_2:66693450-66693469 Msa0266210:CDS 45.0%
!! CGATTCCTAGGTGTTGGAAT+AGG + chr2_2:66693456-66693475 Msa0266210:CDS 45.0%
GGCTGTATATCAGCAAAACC+AGG + chr2_2:66694434-66694453 Msa0266210:CDS 45.0%
GCTGTCATAGCAGCTCTATT+TGG + chr2_2:66694623-66694642 Msa0266210:CDS 45.0%
! GATATAAGCATGAGTGCTGC+TGG - chr2_2:66694698-66694717 None:intergenic 45.0%
ATTAACATCGGAGGCTCGTT+TGG + chr2_2:66695200-66695219 Msa0266210:CDS 45.0%
!! TCAAACTTTGAAGTACCGGC+AGG + chr2_2:66695266-66695285 Msa0266210:CDS 45.0%
ATCTTCGGACTGATACTCAC+TGG - chr2_2:66695386-66695405 None:intergenic 45.0%
CCGAAGATAAGAATGGGACT+TGG + chr2_2:66695398-66695417 Msa0266210:CDS 45.0%
GCTTGCACCTTCACTTTGTT+TGG + chr2_2:66695544-66695563 Msa0266210:CDS 45.0%
TTGTTTGGCTGGTATAGCTG+AGG + chr2_2:66695559-66695578 Msa0266210:CDS 45.0%
AGTGTTTCTTCAGCACTCTC+TGG + chr2_2:66695641-66695660 Msa0266210:CDS 45.0%
TTCTTCAGCACTCTCTGGAT+TGG + chr2_2:66695646-66695665 Msa0266210:CDS 45.0%
CGTGAAACACATGTGACATG+TGG - chr2_2:66696211-66696230 None:intergenic 45.0%
!!! TAATATTATATTTTCATTTT+TGG + chr2_2:66693499-66693518 Msa0266210:intron 5.0%
!!! ATCATTTTTTAATTTTAAAA+AGG - chr2_2:66694185-66694204 None:intergenic 5.0%
AGACCACCCTTGCTTCTTTG+TGG - chr2_2:66693135-66693154 None:intergenic 50.0%
! CAGCTAATGAGGCACTTGCT+AGG + chr2_2:66693277-66693296 Msa0266210:intron 50.0%
CTTCTCATATCCTCTGCAGC+TGG + chr2_2:66693384-66693403 Msa0266210:CDS 50.0%
!! TCAGGTGGATTGCTGCAAGT+AGG - chr2_2:66694413-66694432 None:intergenic 50.0%
ACTTGCAGCAATCCACCTGA+AGG + chr2_2:66694413-66694432 Msa0266210:CDS 50.0%
GCTGATATACAGCCTTCAGG+TGG - chr2_2:66694428-66694447 None:intergenic 50.0%
! CAAAGAACCAGCTTGCTCAC+TGG + chr2_2:66694764-66694783 Msa0266210:CDS 50.0%
TGCAAAACCAGTGAGCAAGC+TGG - chr2_2:66694774-66694793 None:intergenic 50.0%
! GCACCTTCACTTTGTTTGGC+TGG + chr2_2:66695548-66695567 Msa0266210:CDS 50.0%
!! AGCACTCTCTGGATTGGCAA+TGG + chr2_2:66695652-66695671 Msa0266210:CDS 50.0%
CAAGTGGAGGAAAAGATGGG+TGG + chr2_2:66695729-66695748 Msa0266210:CDS 50.0%
GACATGTGGTTCCCACGATT+TGG - chr2_2:66696197-66696216 None:intergenic 50.0%
ACTCGTGAAGGCCGACTATT+AGG + chr2_2:66696452-66696471 Msa0266210:three_prime_UTR 50.0%
CTCGTGAAGGCCGACTATTA+GGG + chr2_2:66696453-66696472 Msa0266210:three_prime_UTR 50.0%
CTTGCTAGGATGGCAAGTGC+TGG + chr2_2:66693291-66693310 Msa0266210:CDS 55.0%
!! AGGATGGCAAGTGCTGGACT+TGG + chr2_2:66693297-66693316 Msa0266210:CDS 55.0%
!! GGTGGATTGCTGCAAGTAGG+AGG - chr2_2:66694410-66694429 None:intergenic 55.0%
GCGATCCCTGTTGACCACAA+TGG - chr2_2:66695173-66695192 None:intergenic 55.0%
!! TCTGGATTGGCAATGGCTGC+CGG + chr2_2:66695659-66695678 Msa0266210:CDS 55.0%
AAGTAGGAGGCTGCGTCGCT+GGG - chr2_2:66694397-66694416 None:intergenic 60.0%
GGCAATGGCTGCCGGAAACT+TGG + chr2_2:66695667-66695686 Msa0266210:CDS 60.0%
AGGCTGCGTCGCTGGGATCA+TGG - chr2_2:66694390-66694409 None:intergenic 65.0%
CAAGTAGGAGGCTGCGTCGC+TGG - chr2_2:66694398-66694417 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 66692981 66696487 66692981 ID=Msa0266210;Name=Msa0266210
chr2_2 mRNA 66692981 66696487 66692981 ID=Msa0266210-mRNA-1;Parent=Msa0266210;Name=Msa0266210-mRNA-1;_AED=0.12;_eAED=0.12;_QI=82|1|1|1|1|1|4|418|636
chr2_2 exon 66692981 66693177 66692981 ID=Msa0266210-mRNA-1:exon:21210;Parent=Msa0266210-mRNA-1
chr2_2 exon 66693280 66693497 66693280 ID=Msa0266210-mRNA-1:exon:21211;Parent=Msa0266210-mRNA-1
chr2_2 exon 66694362 66694909 66694362 ID=Msa0266210-mRNA-1:exon:21212;Parent=Msa0266210-mRNA-1
chr2_2 exon 66695040 66696487 66695040 ID=Msa0266210-mRNA-1:exon:21213;Parent=Msa0266210-mRNA-1
chr2_2 five_prime_UTR 66692981 66693062 66692981 ID=Msa0266210-mRNA-1:five_prime_utr;Parent=Msa0266210-mRNA-1
chr2_2 CDS 66693063 66693177 66693063 ID=Msa0266210-mRNA-1:cds;Parent=Msa0266210-mRNA-1
chr2_2 CDS 66693280 66693497 66693280 ID=Msa0266210-mRNA-1:cds;Parent=Msa0266210-mRNA-1
chr2_2 CDS 66694362 66694909 66694362 ID=Msa0266210-mRNA-1:cds;Parent=Msa0266210-mRNA-1
chr2_2 CDS 66695040 66696069 66695040 ID=Msa0266210-mRNA-1:cds;Parent=Msa0266210-mRNA-1
chr2_2 three_prime_UTR 66696070 66696487 66696070 ID=Msa0266210-mRNA-1:three_prime_utr;Parent=Msa0266210-mRNA-1
Gene Sequence

>Msa0266210

ATGGATAAGGAACTTCAACTTTGTTCAGTTGATGCTGCTGATGAAGAAGAAATGGTTTCTCAACAAAAACCACAAAGAAGCAAGGGTGGTCTTGTCACCATGCCTTTTATCATTGCTAATGAGGCACTTGCTAGGATGGCAAGTGCTGGACTTGGACCCAACATGATATTGTATTTGATGGGATCTTACAACCTTCATCTTGCTACAGCTACTCAGATACTTCTCATATCCTCTGCAGCTGGAAATTTCACACCTGTTGTTGCTGCTTTTATTGCAGATTCTTATATTGGTCGATTCCTAGGTGTTGGAATAGGTTCTATTATCAGTTTCCTGGGAATGTCAATGCTGTGGTTAACAGCCATGATCCCAGCGACGCAGCCTCCTACTTGCAGCAATCCACCTGAAGGCTGTATATCAGCAAAACCAGGTCAAATGGCAATGTTACTCTCTGCGTTAATTCTGATAGGAATTGGAAATGGTGGTATTTCATGTTCTTTAGCATTTGGTGCAGACCAAGTTAAAAGAAAAGAAAATTCCAATAACAATAGAGCTTTGGAAATATTCTTCACTTGGTATTATGCTTCCACAACTATAGCTGTCATAGCAGCTCTATTTGGAATAGTATATATCCAAGATCATCTTGGTTGGAAAATTGGTTTTGGTGTTCCAGCAGCACTCATGCTTATATCCACTGTCTTATTCTTTCTTGCTTCTCCTCTTTATGTGAAAATTACACAAAGAACCAGCTTGCTCACTGGTTTTGCACAAGTATCTGTTGCTGCCTATAAAAACAGAAAACTTTCATTGCCATTGAAAACCTCACCTGAATTTTACCATCATAAAAAAGACTCAGATCTTCTTGTTCCAACTGATAGACTAAGGTTTCTAAATAAAGCTTGTGTTATTCAGGATCACGAACAAGATATAGCCTCAGATGGTTCAACAATAAATCGTTGGAGTCTCTGCACAGTAGATCAAGTTGAAGAACTAAAAGCCATTATTAAAGTTATTCCATTGTGGTCAACAGGGATCGCAATGTCTATTAACATCGGAGGCTCGTTTGGATTGCTGCAAGCTAAATCCTTAGACAGACATATCATTTCAAGTTCAAACTTTGAAGTACCGGCAGGATCTTTTACTATAATCCTTATCTTTGTAATACTTATATGGATAGTTATCTATGATCGTGTTCTTATTCCTTTAGCATCAAAGATAAGAGGGAAACCAGTGAGTATCAGTCCGAAGATAAGAATGGGACTTGGGTTGTTTTTTAATTTTCTTCACTTGGTAGTTGCAGCAATTTTTGAGAGTATAAGGAGAAAGAAAGCAATTCAGGCAGGATTTTTGAATAATACTCATGGAGTGTTGAAAATGTCTGCAATGTGGCTTGCACCTTCACTTTGTTTGGCTGGTATAGCTGAGGCATTCAATGTTATTGGCCAAAATGAGTTTTATTACAAAGAGTTTCCAAAGACTATGTCTAGTGTTTCTTCAGCACTCTCTGGATTGGCAATGGCTGCCGGAAACTTGGTGTCTTCTTTTGTATTCAGCACTATTGAAAACACTACTTCAAGTGGAGGAAAAGATGGGTGGATTTCTGATAATATTAACAAGGGTCATTTCGACAAATATTTATGGGTTATAGCTGGAATTAATGTTCTTAATCTACTGTATTATTTAGTATGCAGTTGGGCTTATGGACCTACAGCTGATCAAGTATCCAAAGTGAGTGAAGAAAATGGTTCCAAGGAGGAAAATTCAACTGAATTCAAAAATGTCAATCCACAAATTGATGACAAGGTTAGTGATGAAACTAGTTCAAAGGAGAAAGAGTTAACTGAATTCAAGAATGGTGGTCAGGTTGAGAAAGTATTCAAGATTAGTGAAGAAAATGGCTTGAAGGAGGAATAG

Protein sequence

>Msa0266210

MDKELQLCSVDAADEEEMVSQQKPQRSKGGLVTMPFIIANEALARMASAGLGPNMILYLMGSYNLHLATATQILLISSAAGNFTPVVAAFIADSYIGRFLGVGIGSIISFLGMSMLWLTAMIPATQPPTCSNPPEGCISAKPGQMAMLLSALILIGIGNGGISCSLAFGADQVKRKENSNNNRALEIFFTWYYASTTIAVIAALFGIVYIQDHLGWKIGFGVPAALMLISTVLFFLASPLYVKITQRTSLLTGFAQVSVAAYKNRKLSLPLKTSPEFYHHKKDSDLLVPTDRLRFLNKACVIQDHEQDIASDGSTINRWSLCTVDQVEELKAIIKVIPLWSTGIAMSINIGGSFGLLQAKSLDRHIISSSNFEVPAGSFTIILIFVILIWIVIYDRVLIPLASKIRGKPVSISPKIRMGLGLFFNFLHLVVAAIFESIRRKKAIQAGFLNNTHGVLKMSAMWLAPSLCLAGIAEAFNVIGQNEFYYKEFPKTMSSVSSALSGLAMAAGNLVSSFVFSTIENTTSSGGKDGWISDNINKGHFDKYLWVIAGINVLNLLYYLVCSWAYGPTADQVSKVSEENGSKEENSTEFKNVNPQIDDKVSDETSSKEKELTEFKNGGQVEKVFKISEENGLKEE*