Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591390 | YP_009656673.1 | 99.270 | 137 | 1 | 0 | 1 | 137 | 1 | 137 | 4.22e-85 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591390 | sp|Q9BBS3|ATPA_LOTJA | 95.620 | 137 | 6 | 0 | 1 | 137 | 1 | 137 | 1.25e-86 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017120 | Msa0591390 | 0.802951 | 4.396768e-49 | -8.615850e-47 |
| Msa0141670 | Msa0591390 | 0.808322 | 3.278929e-50 | -8.615850e-47 |
| Msa0427050 | Msa0591390 | 0.804312 | 2.295151e-49 | -8.615850e-47 |
| Msa0252180 | Msa0591390 | 0.805278 | 1.442117e-49 | -8.615850e-47 |
| Msa0268180 | Msa0591390 | 0.809425 | 1.904127e-50 | -8.615850e-47 |
| Msa0344200 | Msa0591390 | 0.816387 | 5.676497e-52 | -8.615850e-47 |
| Msa0524120 | Msa0591390 | 0.805548 | 1.265863e-49 | -8.615850e-47 |
| Msa0546380 | Msa0591390 | 0.809571 | 1.771695e-50 | -8.615850e-47 |
| Msa0558890 | Msa0591390 | 0.804530 | 2.066562e-49 | -8.615850e-47 |
| Msa0582740 | Msa0591390 | 0.802445 | 5.590315e-49 | -8.615850e-47 |
| Msa0591390 | Msa0606060 | 0.804250 | 2.364481e-49 | -8.615850e-47 |
| Msa0591390 | Msa0653710 | 0.805793 | 1.124635e-49 | -8.615850e-47 |
| Msa0591390 | Msa0686610 | 0.808017 | 3.808593e-50 | -8.615850e-47 |
| Msa0591390 | Msa0782330 | 0.812079 | 5.076631e-51 | -8.615850e-47 |
| Msa0591390 | Msa0796450 | 0.800734 | 1.253939e-48 | -8.615850e-47 |
| Msa0591390 | Msa1002040 | 0.803485 | 3.408915e-49 | -8.615850e-47 |
| Msa0591390 | Msa1086060 | 0.809140 | 2.191564e-50 | -8.615850e-47 |
| Msa0591390 | Msa1120540 | 0.802265 | 6.088693e-49 | -8.615850e-47 |
| Msa0591390 | Msa1323060 | 0.809149 | 2.182541e-50 | -8.615850e-47 |
| Msa0591390 | Msa1367940 | 0.821370 | 4.186663e-53 | -8.615850e-47 |
| Msa0591390 | Msa1387090 | 0.813769 | 2.164019e-51 | -8.615850e-47 |
| Msa0591390 | Msa1394240 | 0.803415 | 3.523777e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591390 | MtrunA17_Chr4g0015651 | 97.810 | 137 | 3 | 0 | 1 | 137 | 1 | 137 | 3.30e-87 | 263 |
| Msa0591390 | MtrunA17_Chr4g0016741 | 97.810 | 137 | 3 | 0 | 1 | 137 | 1 | 137 | 3.30e-87 | 263 |
| Msa0591390 | MtrunA17_CPg0492941 | 97.810 | 137 | 3 | 0 | 1 | 137 | 1 | 137 | 3.30e-87 | 263 |
| Msa0591390 | MtrunA17_Chr4g0040631 | 96.748 | 123 | 4 | 0 | 1 | 123 | 1 | 123 | 1.73e-78 | 229 |
| Msa0591390 | MtrunA17_MTg0490471 | 50.000 | 136 | 68 | 0 | 2 | 137 | 3 | 138 | 2.59e-38 | 136 |
| Msa0591390 | MtrunA17_Chr2g0286451 | 93.220 | 59 | 4 | 0 | 79 | 137 | 7 | 65 | 6.23e-32 | 113 |
| Msa0591390 | MtrunA17_Chr4g0061471 | 86.842 | 38 | 5 | 0 | 100 | 137 | 1 | 38 | 1.41e-16 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591390 | ATCG00120.1 | 91.241 | 137 | 12 | 0 | 1 | 137 | 1 | 137 | 4.01e-82 | 251 |
| Msa0591390 | ATMG01190.1 | 45.865 | 133 | 72 | 0 | 5 | 137 | 6 | 138 | 1.23e-33 | 124 |
| Msa0591390 | AT2G07698.1 | 45.865 | 133 | 72 | 0 | 5 | 137 | 276 | 408 | 2.46e-33 | 124 |
Find 36 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAGTAAGTGAGGGTTATT+TGG | 0.166311 | 4_2:+15629103 | Msa0591390:CDS |
| TGTAGGCATTGCTTTGAATT+TGG | 0.201612 | 4_2:+15628989 | Msa0591390:CDS |
| GACGGCATTGCTCGTATTTA+TGG | 0.205588 | 4_2:+15628918 | Msa0591390:CDS |
| CCCAAATAACCCTCACTTAC+TGG | 0.241036 | 4_2:-15629104 | None:intergenic |
| AAATGTTGGTGTTGTATTAA+TGG | 0.258988 | 4_2:+15629019 | Msa0591390:CDS |
| ATTTCTCCTCGACCATCAAT+AGG | 0.391542 | 4_2:-15629152 | None:intergenic |
| AATGTTGGTGTTGTATTAAT+GGG | 0.391664 | 4_2:+15629020 | Msa0591390:CDS |
| GCCCTAGCTAAACCTATTGA+TGG | 0.393369 | 4_2:+15629140 | Msa0591390:CDS |
| CCAGTAAGTGAGGGTTATTT+GGG | 0.424091 | 4_2:+15629104 | Msa0591390:CDS |
| GGAAGTTCGGTAAAAGCAAC+AGG | 0.457398 | 4_2:+15629065 | Msa0591390:CDS |
| TCGAGGAGAAATTTCAGCTT+CGG | 0.476522 | 4_2:+15629163 | Msa0591390:CDS |
| TATATTGCTCAATACGTTCA+CGG | 0.487151 | 4_2:-15628848 | None:intergenic |
| AAATTTCAGCTTCGGAATCT+CGG | 0.492871 | 4_2:+15629171 | Msa0591390:CDS |
| GGTGTTGTATTAATGGGTGA+TGG | 0.501676 | 4_2:+15629026 | Msa0591390:CDS |
| ACTAATTTCATCTGCACGAA+TGG | 0.507471 | 4_2:-15628817 | None:intergenic |
| GCTGATACAAGAGGGAAGTT+CGG | 0.510716 | 4_2:+15629052 | Msa0591390:CDS |
| TTAATCGAATCTCCCGCTCC+CGG | 0.527597 | 4_2:+15629194 | Msa0591390:CDS |
| GGATTCCTATCTAATGATCC+AGG | 0.536202 | 4_2:-15629947 | None:intergenic |
| TTATGGTCTTGATGAAGTAA+TGG | 0.538951 | 4_2:+15628935 | Msa0591390:CDS |
| GACCATCAATAGGTTTAGCT+AGG | 0.542268 | 4_2:-15629142 | None:intergenic |
| TCACGTCCAGGATTACGTCC+TGG | 0.548081 | 4_2:+15629929 | Msa0591390:intron |
| CTGGAAATAATACCGGGAGC+GGG | 0.565141 | 4_2:-15629206 | None:intergenic |
| TGCTCAGATACCAGTAAGTG+AGG | 0.577261 | 4_2:+15629094 | Msa0591390:CDS |
| TGAATTAGTCGAATTTGAAG+AGG | 0.580561 | 4_2:+15628962 | Msa0591390:CDS |
| TACGTCCTGGATCATTAGAT+AGG | 0.581605 | 4_2:+15629942 | Msa0591390:CDS |
| TCTGGAAATAATACCGGGAG+CGG | 0.588228 | 4_2:-15629207 | None:intergenic |
| ACAGGTACTGTACTTCAAGT+AGG | 0.592569 | 4_2:+15628894 | Msa0591390:CDS |
| GAATTTGAAGAGGGTACTGT+AGG | 0.593991 | 4_2:+15628972 | Msa0591390:CDS |
| ACCATCAATAGGTTTAGCTA+GGG | 0.601516 | 4_2:-15629141 | None:intergenic |
| GAATTAGTCGAATTTGAAGA+GGG | 0.619600 | 4_2:+15628963 | Msa0591390:CDS |
| GCTAAACCTATTGATGGTCG+AGG | 0.620970 | 4_2:+15629146 | Msa0591390:CDS |
| GGTCTTGATGAAGTAATGGC+AGG | 0.640111 | 4_2:+15628939 | Msa0591390:CDS |
| GATGGTTTGCTGATACAAGA+GGG | 0.671964 | 4_2:+15629044 | Msa0591390:CDS |
| GCTCAGATACCAGTAAGTGA+GGG | 0.673181 | 4_2:+15629095 | Msa0591390:CDS |
| TGATGGTTTGCTGATACAAG+AGG | 0.676056 | 4_2:+15629043 | Msa0591390:CDS |
| ACTGTACTTCAAGTAGGCGA+CGG | 0.682410 | 4_2:+15628900 | Msa0591390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAACAAAAAAAAAAAGTA+GGG | - | chr4_2:15629611-15629630 | None:intergenic | 10.0% |
| !!! | ATAATTCTTTTTTTTTGAAT+TGG | + | chr4_2:15629650-15629669 | Msa0591390:intron | 10.0% |
| !!! | TAATTCTTTTTTTTTGAATT+GGG | + | chr4_2:15629651-15629670 | Msa0591390:intron | 10.0% |
| !!! | ATTTTTTTCTTTTGAAATTA+TGG | + | chr4_2:15629777-15629796 | Msa0591390:intron | 10.0% |
| !! | ATAAACAAAAAAAAAAAGTA+GGG | - | chr4_2:15629611-15629630 | None:intergenic | 10.0% |
| !!! | ATAATTCTTTTTTTTTGAAT+TGG | + | chr4_2:15629650-15629669 | Msa0591390:intron | 10.0% |
| !!! | TAATTCTTTTTTTTTGAATT+GGG | + | chr4_2:15629651-15629670 | Msa0591390:intron | 10.0% |
| !!! | ATTTTTTTCTTTTGAAATTA+TGG | + | chr4_2:15629777-15629796 | Msa0591390:intron | 10.0% |
| !!! | TGTATTTACAATTTTTACTT+CGG | - | chr4_2:15628877-15628896 | None:intergenic | 15.0% |
| !! | ATACCATTATTGTATATAAA+AGG | + | chr4_2:15629306-15629325 | Msa0591390:intron | 15.0% |
| !! | TATCAAATAAGATATAAAGA+AGG | + | chr4_2:15629574-15629593 | Msa0591390:intron | 15.0% |
| !! | CATAAACAAAAAAAAAAAGT+AGG | - | chr4_2:15629612-15629631 | None:intergenic | 15.0% |
| !!! | AATTCTTTTTTTTTGAATTG+GGG | + | chr4_2:15629652-15629671 | Msa0591390:intron | 15.0% |
| !!! | TGTATTTACAATTTTTACTT+CGG | - | chr4_2:15628877-15628896 | None:intergenic | 15.0% |
| !! | ATACCATTATTGTATATAAA+AGG | + | chr4_2:15629306-15629325 | Msa0591390:intron | 15.0% |
| !! | TATCAAATAAGATATAAAGA+AGG | + | chr4_2:15629574-15629593 | Msa0591390:intron | 15.0% |
| !! | CATAAACAAAAAAAAAAAGT+AGG | - | chr4_2:15629612-15629631 | None:intergenic | 15.0% |
| !!! | AATTCTTTTTTTTTGAATTG+GGG | + | chr4_2:15629652-15629671 | Msa0591390:intron | 15.0% |
| !! | GAAGTAAAAATTGTAAATAC+AGG | + | chr4_2:15628876-15628895 | Msa0591390:CDS | 20.0% |
| !!! | GATCCTTTTATATACAATAA+TGG | - | chr4_2:15629312-15629331 | None:intergenic | 20.0% |
| !! | AATACCAAATCATCAATAAA+CGG | - | chr4_2:15629760-15629779 | None:intergenic | 20.0% |
| !! | GAAGTAAAAATTGTAAATAC+AGG | + | chr4_2:15628876-15628895 | Msa0591390:CDS | 20.0% |
| !!! | GATCCTTTTATATACAATAA+TGG | - | chr4_2:15629312-15629331 | None:intergenic | 20.0% |
| !! | AATACCAAATCATCAATAAA+CGG | - | chr4_2:15629760-15629779 | None:intergenic | 20.0% |
| !! | AATTTGGAATCCAAAAATGT+TGG | + | chr4_2:15629005-15629024 | Msa0591390:CDS | 25.0% |
| !! | TAATACAACACCAACATTTT+TGG | - | chr4_2:15629018-15629037 | None:intergenic | 25.0% |
| !!! | AAATGTTGGTGTTGTATTAA+TGG | + | chr4_2:15629019-15629038 | Msa0591390:CDS | 25.0% |
| !!! | AATGTTGGTGTTGTATTAAT+GGG | + | chr4_2:15629020-15629039 | Msa0591390:CDS | 25.0% |
| ! | TATTATTTCCAGACGTAAAT+TGG | + | chr4_2:15629217-15629236 | Msa0591390:intron | 25.0% |
| ! | ATACAATAATGGTATTGTAG+CGG | - | chr4_2:15629301-15629320 | None:intergenic | 25.0% |
| !! | CTTTTCTAAATTTCATTAGG+GGG | - | chr4_2:15629422-15629441 | None:intergenic | 25.0% |
| !! | CCTTTTCTAAATTTCATTAG+GGG | - | chr4_2:15629423-15629442 | None:intergenic | 25.0% |
| !! | CCCTTTTCTAAATTTCATTA+GGG | - | chr4_2:15629424-15629443 | None:intergenic | 25.0% |
| ! | CCCTAATGAAATTTAGAAAA+GGG | + | chr4_2:15629421-15629440 | Msa0591390:intron | 25.0% |
| ! | CCTAATGAAATTTAGAAAAG+GGG | + | chr4_2:15629422-15629441 | Msa0591390:intron | 25.0% |
| ! | CTAATGAAATTTAGAAAAGG+GGG | + | chr4_2:15629423-15629442 | Msa0591390:intron | 25.0% |
| !!! | TTTGTTTCTCTTTTCATCTT+CGG | - | chr4_2:15629971-15629990 | None:intergenic | 25.0% |
| !! | AATTTGGAATCCAAAAATGT+TGG | + | chr4_2:15629005-15629024 | Msa0591390:CDS | 25.0% |
| !! | TAATACAACACCAACATTTT+TGG | - | chr4_2:15629018-15629037 | None:intergenic | 25.0% |
| !!! | AAATGTTGGTGTTGTATTAA+TGG | + | chr4_2:15629019-15629038 | Msa0591390:CDS | 25.0% |
| !!! | AATGTTGGTGTTGTATTAAT+GGG | + | chr4_2:15629020-15629039 | Msa0591390:CDS | 25.0% |
| ! | TATTATTTCCAGACGTAAAT+TGG | + | chr4_2:15629217-15629236 | Msa0591390:intron | 25.0% |
| ! | ATACAATAATGGTATTGTAG+CGG | - | chr4_2:15629301-15629320 | None:intergenic | 25.0% |
| !! | CTTTTCTAAATTTCATTAGG+GGG | - | chr4_2:15629422-15629441 | None:intergenic | 25.0% |
| !! | CCTTTTCTAAATTTCATTAG+GGG | - | chr4_2:15629423-15629442 | None:intergenic | 25.0% |
| !! | CCCTTTTCTAAATTTCATTA+GGG | - | chr4_2:15629424-15629443 | None:intergenic | 25.0% |
| ! | CCCTAATGAAATTTAGAAAA+GGG | + | chr4_2:15629421-15629440 | Msa0591390:intron | 25.0% |
| ! | CCTAATGAAATTTAGAAAAG+GGG | + | chr4_2:15629422-15629441 | Msa0591390:intron | 25.0% |
| ! | CTAATGAAATTTAGAAAAGG+GGG | + | chr4_2:15629423-15629442 | Msa0591390:intron | 25.0% |
| !!! | TTTGTTTCTCTTTTCATCTT+CGG | - | chr4_2:15629971-15629990 | None:intergenic | 25.0% |
| TATATTGCTCAATACGTTCA+CGG | - | chr4_2:15628851-15628870 | None:intergenic | 30.0% | |
| ! | TTATGGTCTTGATGAAGTAA+TGG | + | chr4_2:15628935-15628954 | Msa0591390:CDS | 30.0% |
| TGAATTAGTCGAATTTGAAG+AGG | + | chr4_2:15628962-15628981 | Msa0591390:CDS | 30.0% | |
| GAATTAGTCGAATTTGAAGA+GGG | + | chr4_2:15628963-15628982 | Msa0591390:CDS | 30.0% | |
| TTTACGTCTGGAAATAATAC+CGG | - | chr4_2:15629216-15629235 | None:intergenic | 30.0% | |
| ATTGGATCCCTTAACTATTA+AGG | + | chr4_2:15629235-15629254 | Msa0591390:intron | 30.0% | |
| TTGGATCCCTTAACTATTAA+GGG | + | chr4_2:15629236-15629255 | Msa0591390:intron | 30.0% | |
| ATGGATCCCTTAATAGTTAA+GGG | - | chr4_2:15629245-15629264 | None:intergenic | 30.0% | |
| TATGGATCCCTTAATAGTTA+AGG | - | chr4_2:15629246-15629265 | None:intergenic | 30.0% | |
| TACAATAATGGTATTGTAGC+GGG | - | chr4_2:15629300-15629319 | None:intergenic | 30.0% | |
| ATCCGTCTTAATTATGCAAT+AGG | + | chr4_2:15629349-15629368 | Msa0591390:intron | 30.0% | |
| CACCTATTGCATAATTAAGA+CGG | - | chr4_2:15629354-15629373 | None:intergenic | 30.0% | |
| CCCCTAATGAAATTTAGAAA+AGG | + | chr4_2:15629420-15629439 | Msa0591390:intron | 30.0% | |
| ! | CCCCTTTTCTAAATTTCATT+AGG | - | chr4_2:15629425-15629444 | None:intergenic | 30.0% |
| ! | TTGGATTTTCTTTTTGCTGA+AGG | + | chr4_2:15629458-15629477 | Msa0591390:intron | 30.0% |
| ! | CTTTCCGTTTATTGATGATT+TGG | + | chr4_2:15629753-15629772 | Msa0591390:intron | 30.0% |
| TATATTGCTCAATACGTTCA+CGG | - | chr4_2:15628851-15628870 | None:intergenic | 30.0% | |
| ! | TTATGGTCTTGATGAAGTAA+TGG | + | chr4_2:15628935-15628954 | Msa0591390:CDS | 30.0% |
| TGAATTAGTCGAATTTGAAG+AGG | + | chr4_2:15628962-15628981 | Msa0591390:CDS | 30.0% | |
| GAATTAGTCGAATTTGAAGA+GGG | + | chr4_2:15628963-15628982 | Msa0591390:CDS | 30.0% | |
| TTTACGTCTGGAAATAATAC+CGG | - | chr4_2:15629216-15629235 | None:intergenic | 30.0% | |
| ATTGGATCCCTTAACTATTA+AGG | + | chr4_2:15629235-15629254 | Msa0591390:intron | 30.0% | |
| TTGGATCCCTTAACTATTAA+GGG | + | chr4_2:15629236-15629255 | Msa0591390:intron | 30.0% | |
| ATGGATCCCTTAATAGTTAA+GGG | - | chr4_2:15629245-15629264 | None:intergenic | 30.0% | |
| TATGGATCCCTTAATAGTTA+AGG | - | chr4_2:15629246-15629265 | None:intergenic | 30.0% | |
| TACAATAATGGTATTGTAGC+GGG | - | chr4_2:15629300-15629319 | None:intergenic | 30.0% | |
| ATCCGTCTTAATTATGCAAT+AGG | + | chr4_2:15629349-15629368 | Msa0591390:intron | 30.0% | |
| CACCTATTGCATAATTAAGA+CGG | - | chr4_2:15629354-15629373 | None:intergenic | 30.0% | |
| CCCCTAATGAAATTTAGAAA+AGG | + | chr4_2:15629420-15629439 | Msa0591390:intron | 30.0% | |
| ! | CCCCTTTTCTAAATTTCATT+AGG | - | chr4_2:15629425-15629444 | None:intergenic | 30.0% |
| ! | TTGGATTTTCTTTTTGCTGA+AGG | + | chr4_2:15629458-15629477 | Msa0591390:intron | 30.0% |
| ! | CTTTCCGTTTATTGATGATT+TGG | + | chr4_2:15629753-15629772 | Msa0591390:intron | 30.0% |
| ACTAATTTCATCTGCACGAA+TGG | - | chr4_2:15628820-15628839 | None:intergenic | 35.0% | |
| ! | TGTAGGCATTGCTTTGAATT+TGG | + | chr4_2:15628989-15629008 | Msa0591390:CDS | 35.0% |
| ACCATCAATAGGTTTAGCTA+GGG | - | chr4_2:15629144-15629163 | None:intergenic | 35.0% | |
| AAATTTCAGCTTCGGAATCT+CGG | + | chr4_2:15629171-15629190 | Msa0591390:CDS | 35.0% | |
| TTACGTCTGGAAATAATACC+GGG | - | chr4_2:15629215-15629234 | None:intergenic | 35.0% | |
| ! | TAAAAGTGCGATTCGTTCTA+TGG | - | chr4_2:15629264-15629283 | None:intergenic | 35.0% |
| ! | AAAGGATCTTTTGTCGAACA+AGG | + | chr4_2:15629324-15629343 | Msa0591390:intron | 35.0% |
| ! | AAGGATCTTTTGTCGAACAA+GGG | + | chr4_2:15629325-15629344 | Msa0591390:intron | 35.0% |
| !!! | TTTTTTGAATTGGGGAGAGA+TGG | + | chr4_2:15629660-15629679 | Msa0591390:intron | 35.0% |
| CGGTACAAAAATTCGTACAA+CGG | - | chr4_2:15629716-15629735 | None:intergenic | 35.0% | |
| ! | TTGTACGAATTTTTGTACCG+AGG | + | chr4_2:15629716-15629735 | Msa0591390:intron | 35.0% |
| ! | TGTACGAATTTTTGTACCGA+GGG | + | chr4_2:15629717-15629736 | Msa0591390:intron | 35.0% |
| CATCAATAAACGGAAAGAGA+GGG | - | chr4_2:15629750-15629769 | None:intergenic | 35.0% | |
| TCATCAATAAACGGAAAGAG+AGG | - | chr4_2:15629751-15629770 | None:intergenic | 35.0% | |
| TTTGCTTTGCTTATTTGTGC+TGG | - | chr4_2:15629892-15629911 | None:intergenic | 35.0% | |
| ! | TTTTCTTATTCTTCACGTCC+AGG | + | chr4_2:15629917-15629936 | Msa0591390:intron | 35.0% |
| ACTAATTTCATCTGCACGAA+TGG | - | chr4_2:15628820-15628839 | None:intergenic | 35.0% | |
| ! | TGTAGGCATTGCTTTGAATT+TGG | + | chr4_2:15628989-15629008 | Msa0591390:CDS | 35.0% |
| ACCATCAATAGGTTTAGCTA+GGG | - | chr4_2:15629144-15629163 | None:intergenic | 35.0% | |
| AAATTTCAGCTTCGGAATCT+CGG | + | chr4_2:15629171-15629190 | Msa0591390:CDS | 35.0% | |
| TTACGTCTGGAAATAATACC+GGG | - | chr4_2:15629215-15629234 | None:intergenic | 35.0% | |
| ! | TAAAAGTGCGATTCGTTCTA+TGG | - | chr4_2:15629264-15629283 | None:intergenic | 35.0% |
| ! | AAAGGATCTTTTGTCGAACA+AGG | + | chr4_2:15629324-15629343 | Msa0591390:intron | 35.0% |
| ! | AAGGATCTTTTGTCGAACAA+GGG | + | chr4_2:15629325-15629344 | Msa0591390:intron | 35.0% |
| !!! | TTTTTTGAATTGGGGAGAGA+TGG | + | chr4_2:15629660-15629679 | Msa0591390:intron | 35.0% |
| CGGTACAAAAATTCGTACAA+CGG | - | chr4_2:15629716-15629735 | None:intergenic | 35.0% | |
| ! | TTGTACGAATTTTTGTACCG+AGG | + | chr4_2:15629716-15629735 | Msa0591390:intron | 35.0% |
| ! | TGTACGAATTTTTGTACCGA+GGG | + | chr4_2:15629717-15629736 | Msa0591390:intron | 35.0% |
| CATCAATAAACGGAAAGAGA+GGG | - | chr4_2:15629750-15629769 | None:intergenic | 35.0% | |
| TCATCAATAAACGGAAAGAG+AGG | - | chr4_2:15629751-15629770 | None:intergenic | 35.0% | |
| TTTGCTTTGCTTATTTGTGC+TGG | - | chr4_2:15629892-15629911 | None:intergenic | 35.0% | |
| ! | TTTTCTTATTCTTCACGTCC+AGG | + | chr4_2:15629917-15629936 | Msa0591390:intron | 35.0% |
| ! | ACAGGTACTGTACTTCAAGT+AGG | + | chr4_2:15628894-15628913 | Msa0591390:CDS | 40.0% |
| !! | GAATTTGAAGAGGGTACTGT+AGG | + | chr4_2:15628972-15628991 | Msa0591390:CDS | 40.0% |
| ! | GGTGTTGTATTAATGGGTGA+TGG | + | chr4_2:15629026-15629045 | Msa0591390:CDS | 40.0% |
| !! | TGATGGTTTGCTGATACAAG+AGG | + | chr4_2:15629043-15629062 | Msa0591390:CDS | 40.0% |
| !! | GATGGTTTGCTGATACAAGA+GGG | + | chr4_2:15629044-15629063 | Msa0591390:CDS | 40.0% |
| ACCAGTAAGTGAGGGTTATT+TGG | + | chr4_2:15629103-15629122 | Msa0591390:CDS | 40.0% | |
| CCAGTAAGTGAGGGTTATTT+GGG | + | chr4_2:15629104-15629123 | Msa0591390:CDS | 40.0% | |
| GACCATCAATAGGTTTAGCT+AGG | - | chr4_2:15629145-15629164 | None:intergenic | 40.0% | |
| ATTTCTCCTCGACCATCAAT+AGG | - | chr4_2:15629155-15629174 | None:intergenic | 40.0% | |
| TCGAGGAGAAATTTCAGCTT+CGG | + | chr4_2:15629163-15629182 | Msa0591390:CDS | 40.0% | |
| TAAGGGATCCAATTTACGTC+TGG | - | chr4_2:15629228-15629247 | None:intergenic | 40.0% | |
| !! | TTGTAGCGGGTATAGTTTAG+TGG | - | chr4_2:15629287-15629306 | None:intergenic | 40.0% |
| !! | AGTGTTGACGTGTTTCGTAA+AGG | + | chr4_2:15629394-15629413 | Msa0591390:intron | 40.0% |
| ! | GTGTTGACGTGTTTCGTAAA+GGG | + | chr4_2:15629395-15629414 | Msa0591390:intron | 40.0% |
| TGTTGACGTGTTTCGTAAAG+GGG | + | chr4_2:15629396-15629415 | Msa0591390:intron | 40.0% | |
| !!! | AAGGGGGCGAATCTTATTTT+TGG | + | chr4_2:15629439-15629458 | Msa0591390:intron | 40.0% |
| TACGTCCTGGATCATTAGAT+AGG | + | chr4_2:15629942-15629961 | Msa0591390:CDS | 40.0% | |
| GGATTCCTATCTAATGATCC+AGG | - | chr4_2:15629950-15629969 | None:intergenic | 40.0% | |
| ! | ACAGGTACTGTACTTCAAGT+AGG | + | chr4_2:15628894-15628913 | Msa0591390:CDS | 40.0% |
| !! | GAATTTGAAGAGGGTACTGT+AGG | + | chr4_2:15628972-15628991 | Msa0591390:CDS | 40.0% |
| ! | GGTGTTGTATTAATGGGTGA+TGG | + | chr4_2:15629026-15629045 | Msa0591390:CDS | 40.0% |
| !! | TGATGGTTTGCTGATACAAG+AGG | + | chr4_2:15629043-15629062 | Msa0591390:CDS | 40.0% |
| !! | GATGGTTTGCTGATACAAGA+GGG | + | chr4_2:15629044-15629063 | Msa0591390:CDS | 40.0% |
| ACCAGTAAGTGAGGGTTATT+TGG | + | chr4_2:15629103-15629122 | Msa0591390:CDS | 40.0% | |
| CCAGTAAGTGAGGGTTATTT+GGG | + | chr4_2:15629104-15629123 | Msa0591390:CDS | 40.0% | |
| GACCATCAATAGGTTTAGCT+AGG | - | chr4_2:15629145-15629164 | None:intergenic | 40.0% | |
| ATTTCTCCTCGACCATCAAT+AGG | - | chr4_2:15629155-15629174 | None:intergenic | 40.0% | |
| TCGAGGAGAAATTTCAGCTT+CGG | + | chr4_2:15629163-15629182 | Msa0591390:CDS | 40.0% | |
| TAAGGGATCCAATTTACGTC+TGG | - | chr4_2:15629228-15629247 | None:intergenic | 40.0% | |
| !! | TTGTAGCGGGTATAGTTTAG+TGG | - | chr4_2:15629287-15629306 | None:intergenic | 40.0% |
| !! | AGTGTTGACGTGTTTCGTAA+AGG | + | chr4_2:15629394-15629413 | Msa0591390:intron | 40.0% |
| ! | GTGTTGACGTGTTTCGTAAA+GGG | + | chr4_2:15629395-15629414 | Msa0591390:intron | 40.0% |
| TGTTGACGTGTTTCGTAAAG+GGG | + | chr4_2:15629396-15629415 | Msa0591390:intron | 40.0% | |
| !!! | AAGGGGGCGAATCTTATTTT+TGG | + | chr4_2:15629439-15629458 | Msa0591390:intron | 40.0% |
| TACGTCCTGGATCATTAGAT+AGG | + | chr4_2:15629942-15629961 | Msa0591390:CDS | 40.0% | |
| GGATTCCTATCTAATGATCC+AGG | - | chr4_2:15629950-15629969 | None:intergenic | 40.0% | |
| ACTGTACTTCAAGTAGGCGA+CGG | + | chr4_2:15628900-15628919 | Msa0591390:CDS | 45.0% | |
| GACGGCATTGCTCGTATTTA+TGG | + | chr4_2:15628918-15628937 | Msa0591390:CDS | 45.0% | |
| GGTCTTGATGAAGTAATGGC+AGG | + | chr4_2:15628939-15628958 | Msa0591390:CDS | 45.0% | |
| GCTGATACAAGAGGGAAGTT+CGG | + | chr4_2:15629052-15629071 | Msa0591390:CDS | 45.0% | |
| GGAAGTTCGGTAAAAGCAAC+AGG | + | chr4_2:15629065-15629084 | Msa0591390:CDS | 45.0% | |
| TGCTCAGATACCAGTAAGTG+AGG | + | chr4_2:15629094-15629113 | Msa0591390:CDS | 45.0% | |
| GCTCAGATACCAGTAAGTGA+GGG | + | chr4_2:15629095-15629114 | Msa0591390:CDS | 45.0% | |
| CCCAAATAACCCTCACTTAC+TGG | - | chr4_2:15629107-15629126 | None:intergenic | 45.0% | |
| GCCCTAGCTAAACCTATTGA+TGG | + | chr4_2:15629140-15629159 | Msa0591390:CDS | 45.0% | |
| ! | GCTAAACCTATTGATGGTCG+AGG | + | chr4_2:15629146-15629165 | Msa0591390:CDS | 45.0% |
| TCTGGAAATAATACCGGGAG+CGG | - | chr4_2:15629210-15629229 | None:intergenic | 45.0% | |
| AATGATCCAGGACGTAATCC+TGG | - | chr4_2:15629938-15629957 | None:intergenic | 45.0% | |
| ACTGTACTTCAAGTAGGCGA+CGG | + | chr4_2:15628900-15628919 | Msa0591390:CDS | 45.0% | |
| GACGGCATTGCTCGTATTTA+TGG | + | chr4_2:15628918-15628937 | Msa0591390:CDS | 45.0% | |
| GGTCTTGATGAAGTAATGGC+AGG | + | chr4_2:15628939-15628958 | Msa0591390:CDS | 45.0% | |
| GCTGATACAAGAGGGAAGTT+CGG | + | chr4_2:15629052-15629071 | Msa0591390:CDS | 45.0% | |
| GGAAGTTCGGTAAAAGCAAC+AGG | + | chr4_2:15629065-15629084 | Msa0591390:CDS | 45.0% | |
| TGCTCAGATACCAGTAAGTG+AGG | + | chr4_2:15629094-15629113 | Msa0591390:CDS | 45.0% | |
| GCTCAGATACCAGTAAGTGA+GGG | + | chr4_2:15629095-15629114 | Msa0591390:CDS | 45.0% | |
| CCCAAATAACCCTCACTTAC+TGG | - | chr4_2:15629107-15629126 | None:intergenic | 45.0% | |
| GCCCTAGCTAAACCTATTGA+TGG | + | chr4_2:15629140-15629159 | Msa0591390:CDS | 45.0% | |
| ! | GCTAAACCTATTGATGGTCG+AGG | + | chr4_2:15629146-15629165 | Msa0591390:CDS | 45.0% |
| TCTGGAAATAATACCGGGAG+CGG | - | chr4_2:15629210-15629229 | None:intergenic | 45.0% | |
| AATGATCCAGGACGTAATCC+TGG | - | chr4_2:15629938-15629957 | None:intergenic | 45.0% | |
| TTAATCGAATCTCCCGCTCC+CGG | + | chr4_2:15629194-15629213 | Msa0591390:CDS | 50.0% | |
| CTGGAAATAATACCGGGAGC+GGG | - | chr4_2:15629209-15629228 | None:intergenic | 50.0% | |
| !! | GATGGCTGAGTGGACTAAAG+CGG | + | chr4_2:15629678-15629697 | Msa0591390:intron | 50.0% |
| AAGAGAGGGATTCGAACCCT+CGG | - | chr4_2:15629736-15629755 | None:intergenic | 50.0% | |
| TTAATCGAATCTCCCGCTCC+CGG | + | chr4_2:15629194-15629213 | Msa0591390:CDS | 50.0% | |
| CTGGAAATAATACCGGGAGC+GGG | - | chr4_2:15629209-15629228 | None:intergenic | 50.0% | |
| !! | GATGGCTGAGTGGACTAAAG+CGG | + | chr4_2:15629678-15629697 | Msa0591390:intron | 50.0% |
| AAGAGAGGGATTCGAACCCT+CGG | - | chr4_2:15629736-15629755 | None:intergenic | 50.0% | |
| ATTGGGGAGAGATGGCTGAG+TGG | + | chr4_2:15629668-15629687 | Msa0591390:intron | 55.0% | |
| TCACGTCCAGGATTACGTCC+TGG | + | chr4_2:15629929-15629948 | Msa0591390:intron | 55.0% | |
| ATTGGGGAGAGATGGCTGAG+TGG | + | chr4_2:15629668-15629687 | Msa0591390:intron | 55.0% | |
| TCACGTCCAGGATTACGTCC+TGG | + | chr4_2:15629929-15629948 | Msa0591390:intron | 55.0% | |
| !! | GGCTGAGTGGACTAAAGCGG+CGG | + | chr4_2:15629681-15629700 | Msa0591390:intron | 60.0% |
| !! | GGCTGAGTGGACTAAAGCGG+CGG | + | chr4_2:15629681-15629700 | Msa0591390:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 15628810 | 15630009 | 15628810 | ID=Msa0591390;Name=Msa0591390 |
| chr4_2 | mRNA | 15628810 | 15630009 | 15628810 | ID=Msa0591390-mRNA-1;Parent=Msa0591390;Name=Msa0591390-mRNA-1;_AED=0.54;_eAED=0.54;_QI=0|0|0|0.5|1|1|2|0|158 |
| chr4_2 | exon | 15628810 | 15629215 | 15628810 | ID=Msa0591390-mRNA-1:exon:4493;Parent=Msa0591390-mRNA-1 |
| chr4_2 | exon | 15629939 | 15630009 | 15629939 | ID=Msa0591390-mRNA-1:exon:4494;Parent=Msa0591390-mRNA-1 |
| chr4_2 | CDS | 15628810 | 15629215 | 15628810 | ID=Msa0591390-mRNA-1:cds;Parent=Msa0591390-mRNA-1 |
| chr4_2 | CDS | 15629939 | 15630009 | 15629939 | ID=Msa0591390-mRNA-1:cds;Parent=Msa0591390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
