AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0796450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0796450 MtrunA17_Chr5g0399371 89.881 336 15 3 1 329 1 324 0.0 612
Msa0796450 MtrunA17_Chr7g0220151 70.608 296 75 1 34 329 16 299 1.34e-150 430
Msa0796450 MtrunA17_Chr5g0399381 95.960 99 4 0 331 429 28 126 6.07e-65 204
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0796450 AT4G17360.1 60.191 314 103 3 26 329 2 303 8.90e-138 398
Msa0796450 AT5G47435.1 60.841 309 104 3 26 329 2 298 2.38e-137 397
Msa0796450 AT5G47435.2 60.841 309 104 3 26 329 2 298 2.38e-137 397
Msa0796450 AT4G17360.2 59.363 251 92 2 26 266 2 252 2.86e-109 322
Msa0796450 AT4G17360.3 57.339 218 83 2 26 233 2 219 3.40e-89 270
Msa0796450 AT1G31220.1 25.806 186 120 4 144 322 77 251 3.68e-11 64.3

Find 77 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACGAATCACTTCGCTTTC+TGG 0.117075 5_3:-8493888 None:intergenic
CATGTAATTGTTCAATTATT+TGG 0.131222 5_3:-8492465 None:intergenic
AAGAAGATTACCTGCTTAAA+TGG 0.182244 5_3:-8494216 None:intergenic
TCAAAGGCACATGTTGAATT+TGG 0.202436 5_3:-8495986 None:intergenic
GATGCAGGTGTGAAATTAAT+TGG 0.258885 5_3:+8494398 Msa0796450:CDS
CGGATGTTGTTCATTTCATT+TGG 0.291089 5_3:-8492542 None:intergenic
ATTTAAGCAGGTAATCTTCT+TGG 0.291519 5_3:+8494218 Msa0796450:CDS
TTCACCATTTGTTCAATAAT+AGG 0.298667 5_3:-8494461 None:intergenic
TGGATATCACTTGTGTAATT+AGG 0.320225 5_3:+8493743 Msa0796450:CDS
TGTTGAATTTGGCAAGGTTT+TGG 0.325576 5_3:-8495975 None:intergenic
TGCCTGTTGCCATCATTTAG+AGG 0.335658 5_3:+8494186 Msa0796450:CDS
AAGTTCAGGAAAATAATTAA+TGG 0.336335 5_3:+8492429 Msa0796450:five_prime_UTR
TTTAAGCAGGTAATCTTCTT+GGG 0.345527 5_3:+8494219 Msa0796450:CDS
AGAACAGCAATCTTATACTT+AGG 0.389913 5_3:-8493107 None:intergenic
TCGTCTTCCATTTGCATTCG+AGG 0.391948 5_3:-8493020 None:intergenic
GGCCAATGTGCATGTCCCTT+TGG 0.419715 5_3:+8495935 Msa0796450:CDS
TAGACCACGTATATAAGTTC+AGG 0.421366 5_3:+8492415 None:intergenic
ACTGTAATTTCTGACAACTT+TGG 0.422513 5_3:-8492588 None:intergenic
CGCTTTCTGGACCTCTATCA+TGG 0.423861 5_3:-8493875 None:intergenic
GCAGAGGTTTGTGCAGAAAT+CGG 0.428242 5_3:+8494605 Msa0796450:CDS
AATAATGTTACCACCATTTG+AGG 0.432255 5_3:-8492825 None:intergenic
AGTTCAGGAAAATAATTAAT+GGG 0.433866 5_3:+8492430 Msa0796450:five_prime_UTR
AGACATGGATACCATGAGTT+AGG 0.434671 5_3:-8492649 None:intergenic
TGTTGGCAGGCCTTTGATGC+AGG 0.452558 5_3:+8494383 Msa0796450:intron
TCCATCCTGCCATCCGTGTA+AGG 0.455247 5_3:-8493710 None:intergenic
TGCCTCTAAATGATGGCAAC+AGG 0.456960 5_3:-8494188 None:intergenic
TGCTGTTCTTGCGTCAAGCC+AGG 0.464782 5_3:+8493121 Msa0796450:CDS
TGAAACCAGAACACAATCTT+CGG 0.465867 5_3:-8492562 None:intergenic
GATTACCTGCTTAAATGGAT+TGG 0.472493 5_3:-8494211 None:intergenic
TCAGATTGCATTGCCTCAAA+TGG 0.473487 5_3:+8492812 Msa0796450:CDS
AACATCCGAAGATTGTGTTC+TGG 0.477882 5_3:+8492557 Msa0796450:CDS
TAAATGGCCTCGAATGCAAA+TGG 0.495596 5_3:+8493013 Msa0796450:CDS
TGATTCCTTACACGGATGGC+AGG 0.499112 5_3:+8493705 Msa0796450:CDS
TGGACCTATTATTGAACAAA+TGG 0.500868 5_3:+8494457 Msa0796450:CDS
GTGACTGAAGGACGTGATGC+TGG 0.501654 5_3:+8494437 Msa0796450:CDS
GAATGTGAGGCTTCGCCGTA+AGG 0.507920 5_3:+8494242 Msa0796450:CDS
TGGCCATTGAGGCATATACT+AGG 0.518992 5_3:-8495917 None:intergenic
TAATTTCACACCTGCATCAA+AGG 0.519469 5_3:-8494393 None:intergenic
TCAAGTTCCTTCCTAACTCA+TGG 0.520800 5_3:+8492638 Msa0796450:CDS
AGGCACCAATCCATTTAAGC+AGG 0.530213 5_3:+8494206 Msa0796450:CDS
AACAGAGTGTTCAGGGCCAA+AGG 0.532291 5_3:-8495951 None:intergenic
TTGCCTAGTATATGCCTCAA+TGG 0.532572 5_3:+8495914 Msa0796450:CDS
AGAAGAGGATATCTTAAAGC+TGG 0.532640 5_3:+8493968 Msa0796450:CDS
TTCAATAGTAACCATGATAG+AGG 0.538279 5_3:+8493864 Msa0796450:intron
TGTGAGAGCCGATGTGATGC+AGG 0.546444 5_3:+8495866 Msa0796450:CDS
TGTCTAATTGATTCCTTACA+CGG 0.549349 5_3:+8493697 Msa0796450:CDS
TAAATGATGGCAACAGGCAA+TGG 0.555032 5_3:-8494182 None:intergenic
CAGTGTCACTGTGGATGTCA+TGG 0.555585 5_3:+8496067 Msa0796450:CDS
AAAAGAGAATAAAAGAGAAG+AGG 0.557542 5_3:+8493953 Msa0796450:CDS
CTCATAAAGATGACTTGCAG+AGG 0.558739 5_3:+8494589 Msa0796450:CDS
GGCACATGTTGAATTTGGCA+AGG 0.564536 5_3:-8495981 None:intergenic
CGCAAACTCCTGCATCACAT+CGG 0.570725 5_3:-8495874 None:intergenic
ACAGAGTGTTCAGGGCCAAA+GGG 0.578702 5_3:-8495950 None:intergenic
TTAAGCAGGTAATCTTCTTG+GGG 0.579261 5_3:+8494220 Msa0796450:CDS
ATTACACAAGTGATATCCAC+TGG 0.579370 5_3:-8493739 None:intergenic
TAATCTTCTTGGGGAATGTG+AGG 0.587182 5_3:+8494229 Msa0796450:CDS
GACATGCACATTGGCCATTG+AGG 0.589703 5_3:-8495928 None:intergenic
TCCTTACACGGATGGCAGGA+TGG 0.590140 5_3:+8493709 Msa0796450:CDS
GGCCAAAGGGACATGCACAT+TGG 0.590395 5_3:-8495937 None:intergenic
TAATTGATTCCTTACACGGA+TGG 0.590474 5_3:+8493701 Msa0796450:CDS
ATGGATACCATGAGTTAGGA+AGG 0.594334 5_3:-8492645 None:intergenic
CTTCTAATGCTGCAATCAGA+AGG 0.598090 5_3:-8496031 None:intergenic
CAGCATTAGAAGCTGTCTTG+AGG 0.605156 5_3:+8496042 Msa0796450:CDS
TTGCAGGGGTACAACTCAGA+AGG 0.605666 5_3:+8495786 Msa0796450:intron
CTTTAAGCAATCATCATCAA+AGG 0.609564 5_3:-8496002 None:intergenic
GATTGCATTGCCTCAAATGG+TGG 0.622165 5_3:+8492815 Msa0796450:CDS
TTATACTTAGGATCAAGAGC+TGG 0.624265 5_3:-8493095 None:intergenic
GGATTGGTGCCTCTAAATGA+TGG 0.633179 5_3:-8494195 None:intergenic
AGTACTTGCAAGGTATACGA+AGG 0.634867 5_3:+8494010 Msa0796450:CDS
TTACAGGACATTGAAAGACA+TGG 0.637625 5_3:-8492664 None:intergenic
CTTGAGGCTCAGTGTCACTG+TGG 0.648350 5_3:+8496058 Msa0796450:CDS
GTAAGGAATCAATTAGACAA+TGG 0.650271 5_3:-8493693 None:intergenic
AGGGGTACAACTCAGAAGGA+TGG 0.650570 5_3:+8495790 Msa0796450:intron
AATAATTGAACAATTACATG+TGG 0.654171 5_3:+8492468 Msa0796450:exon
GCAGGATGGAAGACTTCCAG+TGG 0.665552 5_3:+8493723 Msa0796450:CDS
GGCATATACTAGGCAACTCG+AGG 0.668865 5_3:-8495907 None:intergenic
TGGTGGTAACATTATTGCTG+CGG 0.706543 5_3:+8492832 Msa0796450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTATAATTTATATGTATAA+AGG + chr5_3:8493413-8493432 Msa0796450:intron 10.0%
!! AAAAAAATAAACATGAATAA+AGG + chr5_3:8495554-8495573 Msa0796450:intron 10.0%
!! AAATGATGATAATAATTCAA+TGG - chr5_3:8492711-8492730 None:intergenic 15.0%
!!! TATTTTTTTGTTTTTGTGAT+AGG + chr5_3:8492763-8492782 Msa0796450:intron 15.0%
!! TTTATTATTCAAAAATTGAG+AGG - chr5_3:8493375-8493394 None:intergenic 15.0%
!!! ATTTTTGAATAATAAAGACA+TGG + chr5_3:8493379-8493398 Msa0796450:intron 15.0%
!! AATTTCTTTCGAAAAATAAA+AGG + chr5_3:8493520-8493539 Msa0796450:intron 15.0%
!!! ACCAAAAATGAATAATTTTA+AGG + chr5_3:8493594-8493613 Msa0796450:intron 15.0%
!!! TCCTTAAAATTATTCATTTT+TGG - chr5_3:8493598-8493617 None:intergenic 15.0%
!!! GTTGTTTTTAAATAATGATA+AGG - chr5_3:8493933-8493952 None:intergenic 15.0%
!! CTAAGTTATTGTATAATAAT+TGG + chr5_3:8495061-8495080 Msa0796450:intron 15.0%
!! AAGTTCAGGAAAATAATTAA+TGG + chr5_3:8492429-8492448 Msa0796450:five_prime_UTR 20.0%
!! AGTTCAGGAAAATAATTAAT+GGG + chr5_3:8492430-8492449 Msa0796450:five_prime_UTR 20.0%
!! CATGTAATTGTTCAATTATT+TGG - chr5_3:8492468-8492487 None:intergenic 20.0%
!! AATAATTGAACAATTACATG+TGG + chr5_3:8492468-8492487 Msa0796450:exon 20.0%
!! TTTACATACATATAGATAAC+AGG - chr5_3:8493170-8493189 None:intergenic 20.0%
!! TTCTATAAATAGAGTTAGTT+AGG + chr5_3:8493228-8493247 Msa0796450:intron 20.0%
!! CATATAAAATGAAGATAACA+TGG - chr5_3:8493262-8493281 None:intergenic 20.0%
!! TTTATCAATGATGAATACAT+GGG - chr5_3:8493307-8493326 None:intergenic 20.0%
!! ATTTATCAATGATGAATACA+TGG - chr5_3:8493308-8493327 None:intergenic 20.0%
!!! ATTTTTCGAAAGAAATTGAA+AGG - chr5_3:8493517-8493536 None:intergenic 20.0%
!!! TATTTTCTTAAGAGTAATTG+CGG + chr5_3:8494086-8494105 Msa0796450:intron 20.0%
!!! TAATATCTAGCAACTTTTTA+AGG + chr5_3:8494130-8494149 Msa0796450:CDS 20.0%
!! TTTAATATGATAGGTTATGT+TGG + chr5_3:8494366-8494385 Msa0796450:intron 20.0%
!!! AAAAGAATACTGTTGTATTT+TGG + chr5_3:8494700-8494719 Msa0796450:intron 20.0%
!!! AAAGAATACTGTTGTATTTT+GGG + chr5_3:8494701-8494720 Msa0796450:intron 20.0%
!!! GGTACATTATTTTTTTTTGA+GGG - chr5_3:8494763-8494782 None:intergenic 20.0%
!!! TGGTACATTATTTTTTTTTG+AGG - chr5_3:8494764-8494783 None:intergenic 20.0%
!!! AATTACACATTTTGGTAAAA+TGG - chr5_3:8494784-8494803 None:intergenic 20.0%
!! CAAAGAACATTTAAATTAGA+CGG + chr5_3:8494899-8494918 Msa0796450:intron 20.0%
!!! GATTTTTCTACGAAAATTTA+TGG - chr5_3:8495418-8495437 None:intergenic 20.0%
!!! TAAATTTTCGTAGAAAAATC+TGG + chr5_3:8495418-8495437 Msa0796450:intron 20.0%
!! ATAAAGGATGTTAACAATTT+CGG + chr5_3:8495570-8495589 Msa0796450:intron 20.0%
!! TATAAAATTGCAATATAACG+AGG - chr5_3:8495659-8495678 None:intergenic 20.0%
! AAACATTTCACATGTGATAT+TGG - chr5_3:8492740-8492759 None:intergenic 25.0%
!! TTTTTGTGATAGGATTCAAT+TGG + chr5_3:8492773-8492792 Msa0796450:intron 25.0%
!! GTTTTTGTACCTCAAAATAA+AGG + chr5_3:8492857-8492876 Msa0796450:CDS 25.0%
!! TTGTTTTCGATCATGTTAAA+TGG + chr5_3:8492997-8493016 Msa0796450:CDS 25.0%
! TACTATTGAATGTATCATCA+TGG - chr5_3:8493854-8493873 None:intergenic 25.0%
! AAAAGAGAATAAAAGAGAAG+AGG + chr5_3:8493953-8493972 Msa0796450:CDS 25.0%
! AATAAGCTAAAAACACCTTA+CGG - chr5_3:8494260-8494279 None:intergenic 25.0%
! CAAAGTTGTTTATCCAAAAA+TGG + chr5_3:8494333-8494352 Msa0796450:intron 25.0%
! GCAAATGTGTTTAATATGAT+AGG + chr5_3:8494357-8494376 Msa0796450:intron 25.0%
! TTCACCATTTGTTCAATAAT+AGG - chr5_3:8494464-8494483 None:intergenic 25.0%
!! ACAGTATTCTTTTCTTCATA+TGG - chr5_3:8494693-8494712 None:intergenic 25.0%
!! AAGAATACTGTTGTATTTTG+GGG + chr5_3:8494702-8494721 Msa0796450:intron 25.0%
!!! TTTTTTTTGAGGGAGTAAAA+TGG - chr5_3:8494753-8494772 None:intergenic 25.0%
!! AGTTGTTCAATTACACATTT+TGG - chr5_3:8494792-8494811 None:intergenic 25.0%
! GTACGTATTTATAATCAGAT+TGG + chr5_3:8494921-8494940 Msa0796450:intron 25.0%
!!! TTTTTGTAAAGGTGTAGATA+TGG + chr5_3:8494976-8494995 Msa0796450:intron 25.0%
! AAAACATCACATTATTATGC+AGG - chr5_3:8495014-8495033 None:intergenic 25.0%
!! TGCATAATAATGTGATGTTT+TGG + chr5_3:8495013-8495032 Msa0796450:intron 25.0%
!!! TCTTTCTGTTTTTTCGTTTT+CGG - chr5_3:8495211-8495230 None:intergenic 25.0%
! TAAAACTAACAAGAAACACA+AGG + chr5_3:8495283-8495302 Msa0796450:intron 25.0%
!! AGGCATAAAACTAATAGTTT+TGG + chr5_3:8495303-8495322 Msa0796450:intron 25.0%
! ATAACATGGTTAACAAATAG+AGG - chr5_3:8495366-8495385 None:intergenic 25.0%
!! CCAACTAAAATTTTGCTAAA+TGG - chr5_3:8495534-8495553 None:intergenic 25.0%
!!! CCATTTAGCAAAATTTTAGT+TGG + chr5_3:8495531-8495550 Msa0796450:intron 25.0%
! GTATATTTCAATTGTGTCAA+TGG - chr5_3:8495633-8495652 None:intergenic 25.0%
!! TTGCATCTAATACATGTTTT+TGG + chr5_3:8495762-8495781 Msa0796450:intron 25.0%
ACTGTAATTTCTGACAACTT+TGG - chr5_3:8492591-8492610 None:intergenic 30.0%
AATGGATGTGAGAATATGAA+TGG - chr5_3:8492693-8492712 None:intergenic 30.0%
AATAATGTTACCACCATTTG+AGG - chr5_3:8492828-8492847 None:intergenic 30.0%
!!! TAGAAGAGTCCTTTATTTTG+AGG - chr5_3:8492869-8492888 None:intergenic 30.0%
AGAACAGCAATCTTATACTT+AGG - chr5_3:8493110-8493129 None:intergenic 30.0%
AACATTTAATAACGTGTACC+TGG - chr5_3:8493142-8493161 None:intergenic 30.0%
GTAAGGAATCAATTAGACAA+TGG - chr5_3:8493696-8493715 None:intergenic 30.0%
! TGTCTAATTGATTCCTTACA+CGG + chr5_3:8493697-8493716 Msa0796450:CDS 30.0%
TGGATATCACTTGTGTAATT+AGG + chr5_3:8493743-8493762 Msa0796450:CDS 30.0%
TTCAATAGTAACCATGATAG+AGG + chr5_3:8493864-8493883 Msa0796450:intron 30.0%
! AAGTGATTCGTTTTCTTGAT+AGG + chr5_3:8493898-8493917 Msa0796450:CDS 30.0%
!!! CTGATTTTTTAGTACTTGCA+AGG + chr5_3:8494000-8494019 Msa0796450:CDS 30.0%
AAGAAGATTACCTGCTTAAA+TGG - chr5_3:8494219-8494238 None:intergenic 30.0%
ATTTAAGCAGGTAATCTTCT+TGG + chr5_3:8494218-8494237 Msa0796450:CDS 30.0%
TTTAAGCAGGTAATCTTCTT+GGG + chr5_3:8494219-8494238 Msa0796450:CDS 30.0%
! AAACACATTTGCTCCATTTT+TGG - chr5_3:8494349-8494368 None:intergenic 30.0%
TGGACCTATTATTGAACAAA+TGG + chr5_3:8494457-8494476 Msa0796450:CDS 30.0%
!! AGAATACTGTTGTATTTTGG+GGG + chr5_3:8494703-8494722 Msa0796450:intron 30.0%
!!! AATAATGTGATGTTTTGGTC+TGG + chr5_3:8495018-8495037 Msa0796450:intron 30.0%
CAACAGTGACAAATATATCT+TGG - chr5_3:8495092-8495111 None:intergenic 30.0%
GATATATTTGTCACTGTTGT+TGG + chr5_3:8495093-8495112 Msa0796450:intron 30.0%
!!! TTCGGTTTTAACTGTTTTAC+TGG - chr5_3:8495193-8495212 None:intergenic 30.0%
! TTTTCGTAGAAAAATCTGGT+TGG + chr5_3:8495422-8495441 Msa0796450:intron 30.0%
TAAGCCTAATATGCTCTTAA+TGG + chr5_3:8495500-8495519 Msa0796450:intron 30.0%
! AATTTTGCTAAATGGCCAAT+TGG - chr5_3:8495526-8495545 None:intergenic 30.0%
! GAAGCTTCTTTCATGTTTTT+GGG - chr5_3:8495707-8495726 None:intergenic 30.0%
! TGAAGCTTCTTTCATGTTTT+TGG - chr5_3:8495708-8495727 None:intergenic 30.0%
CTTTAAGCAATCATCATCAA+AGG - chr5_3:8496005-8496024 None:intergenic 30.0%
CGGATGTTGTTCATTTCATT+TGG - chr5_3:8492545-8492564 None:intergenic 35.0%
TGAAACCAGAACACAATCTT+CGG - chr5_3:8492565-8492584 None:intergenic 35.0%
TTACAGGACATTGAAAGACA+TGG - chr5_3:8492667-8492686 None:intergenic 35.0%
AGAATATGAATGGCACTTAC+AGG - chr5_3:8492683-8492702 None:intergenic 35.0%
TTATACTTAGGATCAAGAGC+TGG - chr5_3:8493098-8493117 None:intergenic 35.0%
! TAATTGATTCCTTACACGGA+TGG + chr5_3:8493701-8493720 Msa0796450:CDS 35.0%
ATTACACAAGTGATATCCAC+TGG - chr5_3:8493742-8493761 None:intergenic 35.0%
AGAAGAGGATATCTTAAAGC+TGG + chr5_3:8493968-8493987 Msa0796450:CDS 35.0%
!! AGCAACTTTTTAAGGAGCTA+TGG + chr5_3:8494138-8494157 Msa0796450:CDS 35.0%
!! CTTTTTAAGGAGCTATGGAA+AGG + chr5_3:8494143-8494162 Msa0796450:CDS 35.0%
GATTACCTGCTTAAATGGAT+TGG - chr5_3:8494214-8494233 None:intergenic 35.0%
TTAAGCAGGTAATCTTCTTG+GGG + chr5_3:8494220-8494239 Msa0796450:CDS 35.0%
ATATGATAGGTTATGTTGGC+AGG + chr5_3:8494370-8494389 Msa0796450:intron 35.0%
TAATTTCACACCTGCATCAA+AGG - chr5_3:8494396-8494415 None:intergenic 35.0%
GATGCAGGTGTGAAATTAAT+TGG + chr5_3:8494398-8494417 Msa0796450:CDS 35.0%
!! ACAAGTCATTTTGTGACTGA+AGG + chr5_3:8494425-8494444 Msa0796450:CDS 35.0%
TGAGAAACAATGTCTGTCAA+TGG + chr5_3:8494635-8494654 Msa0796450:intron 35.0%
!! TTGACAGGTTAAAAGTGTCA+AGG - chr5_3:8494857-8494876 None:intergenic 35.0%
!! TCTCAGGTGAAAATTTTGAC+AGG - chr5_3:8494872-8494891 None:intergenic 35.0%
!!! TGCTGCTGAGTTTTTTGTAA+AGG + chr5_3:8494965-8494984 Msa0796450:intron 35.0%
!!! ATGTTTTGGTCTGGTTTATG+CGG + chr5_3:8495027-8495046 Msa0796450:intron 35.0%
TCCAAACTGTATACTCTTTG+AGG + chr5_3:8495126-8495145 Msa0796450:intron 35.0%
CCAAACTGTATACTCTTTGA+GGG + chr5_3:8495127-8495146 Msa0796450:intron 35.0%
ATCCATAGATTCAATACCAG+TGG + chr5_3:8495150-8495169 Msa0796450:intron 35.0%
!!! ATAGTTTTGGTTCTAGTCAC+TGG + chr5_3:8495316-8495335 Msa0796450:intron 35.0%
GATGCTTTGCATCAATAACA+TGG - chr5_3:8495380-8495399 None:intergenic 35.0%
! TGCAAAGCATCTATCAACTT+TGG + chr5_3:8495389-8495408 Msa0796450:intron 35.0%
! TTGGCCATTAAGAGCATATT+AGG - chr5_3:8495507-8495526 None:intergenic 35.0%
ATATGCTCTTAATGGCCAAT+TGG + chr5_3:8495508-8495527 Msa0796450:intron 35.0%
CAATTGTGTCAATGGTAGTT+TGG - chr5_3:8495625-8495644 None:intergenic 35.0%
GATTATCCATAAAGCCAACT+TGG - chr5_3:8495732-8495751 None:intergenic 35.0%
!!! AATACATGTTTTTGGCTTGC+AGG + chr5_3:8495770-8495789 Msa0796450:intron 35.0%
!!! ATACATGTTTTTGGCTTGCA+GGG + chr5_3:8495771-8495790 Msa0796450:intron 35.0%
!! TTTTGGTAACAGAGTGTTCA+GGG - chr5_3:8495961-8495980 None:intergenic 35.0%
! TGTTGAATTTGGCAAGGTTT+TGG - chr5_3:8495978-8495997 None:intergenic 35.0%
! TCAAAGGCACATGTTGAATT+TGG - chr5_3:8495989-8496008 None:intergenic 35.0%
AACATCCGAAGATTGTGTTC+TGG + chr5_3:8492557-8492576 Msa0796450:CDS 40.0%
TCAAGTTCCTTCCTAACTCA+TGG + chr5_3:8492638-8492657 Msa0796450:CDS 40.0%
ATGGATACCATGAGTTAGGA+AGG - chr5_3:8492648-8492667 None:intergenic 40.0%
AGACATGGATACCATGAGTT+AGG - chr5_3:8492652-8492671 None:intergenic 40.0%
TCAGATTGCATTGCCTCAAA+TGG + chr5_3:8492812-8492831 Msa0796450:CDS 40.0%
TGGTGGTAACATTATTGCTG+CGG + chr5_3:8492832-8492851 Msa0796450:CDS 40.0%
TAAATGGCCTCGAATGCAAA+TGG + chr5_3:8493013-8493032 Msa0796450:CDS 40.0%
CATGAACGTGCTTATTCACA+AGG + chr5_3:8493552-8493571 Msa0796450:intron 40.0%
GTCCTGCAACAAAATAGAGA+GGG - chr5_3:8493674-8493693 None:intergenic 40.0%
AAACGAATCACTTCGCTTTC+TGG - chr5_3:8493891-8493910 None:intergenic 40.0%
AGTACTTGCAAGGTATACGA+AGG + chr5_3:8494010-8494029 Msa0796450:CDS 40.0%
TAAATGATGGCAACAGGCAA+TGG - chr5_3:8494185-8494204 None:intergenic 40.0%
TAATCTTCTTGGGGAATGTG+AGG + chr5_3:8494229-8494248 Msa0796450:CDS 40.0%
! CTCATAAAGATGACTTGCAG+AGG + chr5_3:8494589-8494608 Msa0796450:CDS 40.0%
TGTTCTTTGCATCTGTTCTC+AGG - chr5_3:8494888-8494907 None:intergenic 40.0%
! CCCTCAAAGAGTATACAGTT+TGG - chr5_3:8495130-8495149 None:intergenic 40.0%
! CTCCACTGGTATTGAATCTA+TGG - chr5_3:8495155-8495174 None:intergenic 40.0%
TAGATTCAATACCAGTGGAG+AGG + chr5_3:8495155-8495174 Msa0796450:intron 40.0%
AGATTCAATACCAGTGGAGA+GGG + chr5_3:8495156-8495175 Msa0796450:intron 40.0%
!! GTCAATGGTAGTTTGGTGTT+AGG - chr5_3:8495618-8495637 None:intergenic 40.0%
GAAAGAAGCTTCATCCAAGT+TGG + chr5_3:8495715-8495734 Msa0796450:intron 40.0%
!! CTTCATCCAAGTTGGCTTTA+TGG + chr5_3:8495723-8495742 Msa0796450:intron 40.0%
!!! TACATGTTTTTGGCTTGCAG+GGG + chr5_3:8495772-8495791 Msa0796450:intron 40.0%
TTGCCTAGTATATGCCTCAA+TGG + chr5_3:8495914-8495933 Msa0796450:CDS 40.0%
!! GTTTTGGTAACAGAGTGTTC+AGG - chr5_3:8495962-8495981 None:intergenic 40.0%
CTTCTAATGCTGCAATCAGA+AGG - chr5_3:8496034-8496053 None:intergenic 40.0%
GATTGCATTGCCTCAAATGG+TGG + chr5_3:8492815-8492834 Msa0796450:CDS 45.0%
TCGTCTTCCATTTGCATTCG+AGG - chr5_3:8493023-8493042 None:intergenic 45.0%
! TGCCCTCTCTATTTTGTTGC+AGG + chr5_3:8493669-8493688 Msa0796450:intron 45.0%
GGTCCTGCAACAAAATAGAG+AGG - chr5_3:8493675-8493694 None:intergenic 45.0%
TGCCTGTTGCCATCATTTAG+AGG + chr5_3:8494186-8494205 Msa0796450:CDS 45.0%
TGCCTCTAAATGATGGCAAC+AGG - chr5_3:8494191-8494210 None:intergenic 45.0%
! GGATTGGTGCCTCTAAATGA+TGG - chr5_3:8494198-8494217 None:intergenic 45.0%
AGGCACCAATCCATTTAAGC+AGG + chr5_3:8494206-8494225 Msa0796450:CDS 45.0%
! GCTACAACCTTTTCAACTGC+AGG + chr5_3:8494554-8494573 Msa0796450:intron 45.0%
CTCTCAACCTGCAGTTGAAA+AGG - chr5_3:8494564-8494583 None:intergenic 45.0%
GCAGAGGTTTGTGCAGAAAT+CGG + chr5_3:8494605-8494624 Msa0796450:CDS 45.0%
! TGGTCTGGTTTATGCGGTTT+CGG + chr5_3:8495033-8495052 Msa0796450:intron 45.0%
AGGGGAAACTCCACTAAAAG+CGG - chr5_3:8495448-8495467 None:intergenic 45.0%
TTGTGCAAAAGAGAGCCTTG+CGG - chr5_3:8495476-8495495 None:intergenic 45.0%
TGGCCATTGAGGCATATACT+AGG - chr5_3:8495920-8495939 None:intergenic 45.0%
GGCACATGTTGAATTTGGCA+AGG - chr5_3:8495984-8496003 None:intergenic 45.0%
CAGCATTAGAAGCTGTCTTG+AGG + chr5_3:8496042-8496061 Msa0796450:CDS 45.0%
TGATTCCTTACACGGATGGC+AGG + chr5_3:8493705-8493724 Msa0796450:CDS 50.0%
CGCTTTCTGGACCTCTATCA+TGG - chr5_3:8493878-8493897 None:intergenic 50.0%
ATACCAGTGGAGAGGGAAAG+AGG + chr5_3:8495163-8495182 Msa0796450:intron 50.0%
TTTCCTCTTTCCCTCTCCAC+TGG - chr5_3:8495169-8495188 None:intergenic 50.0%
!!! ATCTGGTTGGCCGCTTTTAG+TGG + chr5_3:8495435-8495454 Msa0796450:intron 50.0%
CAAAAGAGAGCCTTGCGGTT+GGG - chr5_3:8495471-8495490 None:intergenic 50.0%
! TTGCAGGGGTACAACTCAGA+AGG + chr5_3:8495786-8495805 Msa0796450:intron 50.0%
! AGGGGTACAACTCAGAAGGA+TGG + chr5_3:8495790-8495809 Msa0796450:intron 50.0%
CGCAAACTCCTGCATCACAT+CGG - chr5_3:8495877-8495896 None:intergenic 50.0%
GGCATATACTAGGCAACTCG+AGG - chr5_3:8495910-8495929 None:intergenic 50.0%
GACATGCACATTGGCCATTG+AGG - chr5_3:8495931-8495950 None:intergenic 50.0%
! ACAGAGTGTTCAGGGCCAAA+GGG - chr5_3:8495953-8495972 None:intergenic 50.0%
! AACAGAGTGTTCAGGGCCAA+AGG - chr5_3:8495954-8495973 None:intergenic 50.0%
! CAGTGTCACTGTGGATGTCA+TGG + chr5_3:8496067-8496086 Msa0796450:CDS 50.0%
TGCTGTTCTTGCGTCAAGCC+AGG + chr5_3:8493121-8493140 Msa0796450:CDS 55.0%
TCCTTACACGGATGGCAGGA+TGG + chr5_3:8493709-8493728 Msa0796450:CDS 55.0%
TCCATCCTGCCATCCGTGTA+AGG - chr5_3:8493713-8493732 None:intergenic 55.0%
GCAGGATGGAAGACTTCCAG+TGG + chr5_3:8493723-8493742 Msa0796450:CDS 55.0%
GAATGTGAGGCTTCGCCGTA+AGG + chr5_3:8494242-8494261 Msa0796450:CDS 55.0%
TGTTGGCAGGCCTTTGATGC+AGG + chr5_3:8494383-8494402 Msa0796450:intron 55.0%
GTGACTGAAGGACGTGATGC+TGG + chr5_3:8494437-8494456 Msa0796450:CDS 55.0%
GCAAAAGAGAGCCTTGCGGT+TGG - chr5_3:8495472-8495491 None:intergenic 55.0%
TGTGAGAGCCGATGTGATGC+AGG + chr5_3:8495866-8495885 Msa0796450:CDS 55.0%
GGCCAATGTGCATGTCCCTT+TGG + chr5_3:8495935-8495954 Msa0796450:CDS 55.0%
GGCCAAAGGGACATGCACAT+TGG - chr5_3:8495940-8495959 None:intergenic 55.0%
! CTTGAGGCTCAGTGTCACTG+TGG + chr5_3:8496058-8496077 Msa0796450:CDS 55.0%
AGTTTCCCCTCCCAACCGCA+AGG + chr5_3:8495458-8495477 Msa0796450:intron 60.0%
AGAGAGCCTTGCGGTTGGGA+GGG - chr5_3:8495467-8495486 None:intergenic 60.0%
AAGAGAGCCTTGCGGTTGGG+AGG - chr5_3:8495468-8495487 None:intergenic 60.0%
GAGAGCCTTGCGGTTGGGAG+GGG - chr5_3:8495466-8495485 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 8492420 8496093 8492420 ID=Msa0796450;Name=Msa0796450
chr5_3 mRNA 8492420 8496093 8492420 ID=Msa0796450-mRNA-1;Parent=Msa0796450;Name=Msa0796450-mRNA-1;_AED=0.21;_eAED=0.21;_QI=65|0.75|0.66|1|1|1|9|0|429
chr5_3 exon 8492420 8492682 8492420 ID=Msa0796450-mRNA-1:exon:3579;Parent=Msa0796450-mRNA-1
chr5_3 exon 8492785 8492897 8492785 ID=Msa0796450-mRNA-1:exon:3580;Parent=Msa0796450-mRNA-1
chr5_3 exon 8492992 8493142 8492992 ID=Msa0796450-mRNA-1:exon:3581;Parent=Msa0796450-mRNA-1
chr5_3 exon 8493691 8493764 8493691 ID=Msa0796450-mRNA-1:exon:3582;Parent=Msa0796450-mRNA-1
chr5_3 exon 8493872 8494031 8493872 ID=Msa0796450-mRNA-1:exon:3583;Parent=Msa0796450-mRNA-1
chr5_3 exon 8494129 8494263 8494129 ID=Msa0796450-mRNA-1:exon:3584;Parent=Msa0796450-mRNA-1
chr5_3 exon 8494392 8494478 8494392 ID=Msa0796450-mRNA-1:exon:3585;Parent=Msa0796450-mRNA-1
chr5_3 exon 8494576 8494645 8494576 ID=Msa0796450-mRNA-1:exon:3586;Parent=Msa0796450-mRNA-1
chr5_3 exon 8495792 8496093 8495792 ID=Msa0796450-mRNA-1:exon:3587;Parent=Msa0796450-mRNA-1
chr5_3 five_prime_UTR 8492420 8492484 8492420 ID=Msa0796450-mRNA-1:five_prime_utr;Parent=Msa0796450-mRNA-1
chr5_3 CDS 8492485 8492682 8492485 ID=Msa0796450-mRNA-1:cds;Parent=Msa0796450-mRNA-1
chr5_3 CDS 8492785 8492897 8492785 ID=Msa0796450-mRNA-1:cds;Parent=Msa0796450-mRNA-1
chr5_3 CDS 8492992 8493142 8492992 ID=Msa0796450-mRNA-1:cds;Parent=Msa0796450-mRNA-1
chr5_3 CDS 8493691 8493764 8493691 ID=Msa0796450-mRNA-1:cds;Parent=Msa0796450-mRNA-1
chr5_3 CDS 8493872 8494031 8493872 ID=Msa0796450-mRNA-1:cds;Parent=Msa0796450-mRNA-1
chr5_3 CDS 8494129 8494263 8494129 ID=Msa0796450-mRNA-1:cds;Parent=Msa0796450-mRNA-1
chr5_3 CDS 8494392 8494478 8494392 ID=Msa0796450-mRNA-1:cds;Parent=Msa0796450-mRNA-1
chr5_3 CDS 8494576 8494645 8494576 ID=Msa0796450-mRNA-1:cds;Parent=Msa0796450-mRNA-1
chr5_3 CDS 8495792 8496093 8495792 ID=Msa0796450-mRNA-1:cds;Parent=Msa0796450-mRNA-1
Gene Sequence

>Msa0796450

ATGTGGTGTGTGAACACAATTGCACAACTCAAATTAAACAGATTAATTTTGAGACAACCAAATGAAATGAACAACATCCGAAGATTGTGTTCTGGTTTCAGTTCCAAAGTTGTCAGAAATTACAGTCACAATTCTTTTAATGATAATTCTGCTTCAAGTTCCTTCCTAACTCATGGTATCCATGTCTTTCAATGTCCTGATTCAATTGGAATTGTAGCAAAACTATCAGATTGCATTGCCTCAAATGGTGGTAACATTATTGCTGCGGATGTTTTTGTACCTCAAAATAAAGGACTCTTCTACTCTAGAACTGATTTTGTTTTCGATCATGTTAAATGGCCTCGAATGCAAATGGAAGACGATTTCTTAAAAATCTCTAAAACATATAATGCTGTGAGATCTATTCTAAAAGTGCCAGCTCTTGATCCTAAGTATAAGATTGCTGTTCTTGCGTCAAGCCAGGACCATTGTCTAATTGATTCCTTACACGGATGGCAGGATGGAAGACTTCCAGTGGATATCACTTGTGTAATTAGTAACCATGATAGAGGTCCAGAAAGCGAAGTGATTCGTTTTCTTGATAGGCACAATATTCCTTATCATTATTTAAAAACAACAAAAGAGAATAAAAGAGAAGAGGATATCTTAAAGCTGGTTCAAGACACTGATTTTTTAGTACTTGCAAGGTATACGAAGATAATATCTAGCAACTTTTTAAGGAGCTATGGAAAGGATATAATTAACATTCACCATTGCCTGTTGCCATCATTTAGAGGCACCAATCCATTTAAGCAGGTAATCTTCTTGGGGAATGTGAGGCTTCGCCGTAAGGCCTTTGATGCAGGTGTGAAATTAATTGGTGCGACAAGTCATTTTGTGACTGAAGGACGTGATGCTGGACCTATTATTGAACAAATGGTTGAGAGAGTTTCTCATAAAGATGACTTGCAGAGGTTTGTGCAGAAATCGGAAAACATTGAGAAACAATGGGTACAACTCAGAAGGATGGTAGCAGCACAAGCACAGCAAACTTATAATATTAAATGTCAAACAGATGCAGACTGTGAGAGCCGATGTGATGCAGGAGTTTGCGAAAAGAACTGCCTCGAGTTGCCTAGTATATGCCTCAATGGCCAATGTGCATGTCCCTTTGGCCCTGAACACTCTGTTACCAAAACCTTGCCAAATTCAACATGTGCCTTTGATGATGATTGCTTAAAGCTCTGTCCTTCTGATTGCAGCATTAGAAGCTGTCTTGAGGCTCAGTGTCACTGTGGATGTCATGGATAG

Protein sequence

>Msa0796450

MWCVNTIAQLKLNRLILRQPNEMNNIRRLCSGFSSKVVRNYSHNSFNDNSASSSFLTHGIHVFQCPDSIGIVAKLSDCIASNGGNIIAADVFVPQNKGLFYSRTDFVFDHVKWPRMQMEDDFLKISKTYNAVRSILKVPALDPKYKIAVLASSQDHCLIDSLHGWQDGRLPVDITCVISNHDRGPESEVIRFLDRHNIPYHYLKTTKENKREEDILKLVQDTDFLVLARYTKIISSNFLRSYGKDIINIHHCLLPSFRGTNPFKQVIFLGNVRLRRKAFDAGVKLIGATSHFVTEGRDAGPIIEQMVERVSHKDDLQRFVQKSENIEKQWVQLRRMVAAQAQQTYNIKCQTDADCESRCDAGVCEKNCLELPSICLNGQCACPFGPEHSVTKTLPNSTCAFDDDCLKLCPSDCSIRSCLEAQCHCGCHG*