AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1120540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1120540 MtrunA17_Chr7g0251231 96.361 632 21 1 1 632 1 630 0.0 1193
Msa1120540 MtrunA17_Chr3g0102681 29.116 577 348 14 12 565 31 569 3.67e-23 104
Msa1120540 MtrunA17_Chr5g0446731 27.196 592 366 15 11 574 29 583 3.32e-14 75.9
Msa1120540 MtrunA17_Chr3g0078801 25.960 651 411 16 11 627 29 642 4.68e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1120540 AT1G66840.2 39.691 582 323 8 57 626 35 600 2.57e-96 308
Msa1120540 AT1G66840.1 39.691 582 323 8 57 626 35 600 2.57e-96 308
Msa1120540 AT5G38150.1 39.405 571 314 9 58 623 33 576 2.76e-84 276
Msa1120540 AT5G55860.1 26.911 654 395 13 12 629 29 635 2.27e-21 99.0
Msa1120540 AT2G26570.1 26.243 503 326 12 57 530 204 690 1.73e-11 67.8
Msa1120540 AT2G26570.2 26.243 503 326 12 57 530 204 690 1.73e-11 67.8

Find 111 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGATACTCGTATTCAAATT+TGG 0.191661 7_3:+70009595 None:intergenic
CGCCTCAAGTTCCTCCTTTA+CGG 0.197031 7_3:+70010111 None:intergenic
AAAGAAAGTTATCCCGAATT+TGG 0.197738 7_3:-70009201 Msa1120540:CDS
CTGAATAACTTTGCCAAATT+CGG 0.202551 7_3:+70009188 None:intergenic
AGAAACAGATGAAGCTAAAA+TGG 0.255073 7_3:-70009840 Msa1120540:CDS
TTGTTACATCCCTACTTGTT+AGG 0.286447 7_3:-70011645 Msa1120540:five_prime_UTR
TGGCGTTGAATTTACTCTTT+AGG 0.299788 7_3:+70009146 None:intergenic
TGACTGGTTGTGACTGGTTT+TGG 0.299957 7_3:+70011689 None:intergenic
TGATGCTTCAATTTCTTTCT+CGG 0.302263 7_3:+70010528 None:intergenic
AGAATTGGAATATCTTAAAA+AGG 0.311688 7_3:-70010605 Msa1120540:CDS
AGTTCTCTTGTTCTTGAAGT+AGG 0.315905 7_3:+70010883 None:intergenic
TGTTAAAGCTCTTTCTTTCA+TGG 0.315991 7_3:+70009646 None:intergenic
AAATTGAAAGATGAGAAAAT+TGG 0.321578 7_3:-70011776 Msa1120540:five_prime_UTR
TGAATAACTTTGCCAAATTC+GGG 0.330803 7_3:+70009189 None:intergenic
AACAACTGAAGCTTTAGCTT+TGG 0.339949 7_3:-70009696 Msa1120540:CDS
AGCAAGTACTTGTTCTTCAT+TGG 0.359144 7_3:+70010444 None:intergenic
GGACTAATGTGCCGAGTTGC+GGG 0.361346 7_3:+70009242 None:intergenic
AGAACAAGTACTTGCTGAAT+TGG 0.382678 7_3:-70010437 Msa1120540:CDS
AGCAGCAGACTTCGGAAACT+TGG 0.417792 7_3:+70009268 None:intergenic
TTAAGAAAAGGCGACGAATC+AGG 0.418875 7_3:-70010154 Msa1120540:CDS
AGAAAGAGTATTAAATCAAA+TGG 0.421669 7_3:-70009314 Msa1120540:CDS
TTAGTAGCGAGGAGTTTGAT+AGG 0.425195 7_3:-70009379 Msa1120540:CDS
CTCCTTTACGGTTTGTAACT+CGG 0.426077 7_3:+70010123 None:intergenic
AGATGAAAGTATGAAACTAT+TGG 0.426555 7_3:-70010185 Msa1120540:CDS
TTGTCAAAGAAATGGAGAAA+AGG 0.431092 7_3:-70010216 Msa1120540:CDS
GTTCTCTTGTTCTTGAAGTA+GGG 0.431248 7_3:+70010884 None:intergenic
TGTCAAAGAAATGGAGAAAA+GGG 0.434272 7_3:-70010215 Msa1120540:CDS
GAAGGTACAAAGGGAGTAGA+TGG 0.435079 7_3:-70010837 Msa1120540:CDS
TGCACATGTAATGAGAGAAT+TGG 0.436853 7_3:-70010620 Msa1120540:CDS
AATTGAAAGATGAGAAAATT+GGG 0.437424 7_3:-70011775 Msa1120540:five_prime_UTR
TTATTAGTCTATATGATGAT+AGG 0.440282 7_3:-70011203 Msa1120540:CDS
GATGTAACAAGAAGAGGGAG+GGG 0.442607 7_3:+70011658 None:intergenic
TTCCAATGTCTCTTCTAGCT+TGG 0.442664 7_3:+70010857 None:intergenic
TTAGCTTTGATTAGAGATGA+AGG 0.446414 7_3:-70010076 Msa1120540:CDS
TGAGGCTTTGAAAGAGTTGG+AGG 0.446916 7_3:-70010407 Msa1120540:CDS
TATATGATGATAGGAATCAT+AGG 0.453671 7_3:-70011194 Msa1120540:CDS
AGATATTATAACAACTAAGT+TGG 0.460017 7_3:-70009798 Msa1120540:CDS
CATAGAGACACTAGAGAAGA+AGG 0.461128 7_3:-70010695 Msa1120540:CDS
CCTTCAGCTTTGGCAACAGA+TGG 0.465932 7_3:-70011271 Msa1120540:intron
TTGGAAGGAAGTTTAAGAAA+AGG 0.468418 7_3:-70010166 Msa1120540:CDS
TGCTGAATTGGCCAGGATTG+AGG 0.469806 7_3:-70010425 Msa1120540:CDS
AACTTTATATCTAATATGTC+AGG 0.478326 7_3:-70009046 Msa1120540:three_prime_UTR
TTTCTCTTCTTAAGAGTGAA+AGG 0.481141 7_3:+70009221 None:intergenic
AAATCTCTCTTCTATGATTG+AGG 0.483933 7_3:-70010752 Msa1120540:CDS
CAAGAAAAGAAGAAGTACTT+AGG 0.484173 7_3:-70010483 Msa1120540:CDS
TTCATTGAAGAAAACTCAGA+TGG 0.484456 7_3:-70011151 Msa1120540:CDS
GTTCAAATGTCCTAACAAGT+AGG 0.485311 7_3:+70011635 None:intergenic
ACACTAGAGAAGAAGGGAAA+AGG 0.488755 7_3:-70010688 Msa1120540:CDS
GATTGAGGCTTTGAAAGAGT+TGG 0.490184 7_3:-70010410 Msa1120540:CDS
AACATGGTGCTATGGTTGTA+AGG 0.493840 7_3:-70010663 Msa1120540:CDS
CTCTTTCAAAGCCTCAATCC+TGG 0.493907 7_3:+70010414 None:intergenic
TTCAAATGTCCTAACAAGTA+GGG 0.494184 7_3:+70011636 None:intergenic
GAAATGGAGAAAAGGGTTCA+AGG 0.496156 7_3:-70010208 Msa1120540:CDS
AGTGAATTTAAAACCAAAAG+TGG 0.496690 7_3:-70011809 Msa1120540:five_prime_UTR
AAGTACTTGCTGAATTGGCC+AGG 0.505239 7_3:-70010432 Msa1120540:CDS
TGAGCTGAAGCATGTAACTA+AGG 0.508606 7_3:-70010017 Msa1120540:CDS
AAAAGAAGAAGTACTTAGGA+AGG 0.511673 7_3:-70010479 Msa1120540:CDS
GAGCGAGAAGGAAATACTAC+TGG 0.513052 7_3:-70009492 Msa1120540:CDS
TGAGAGGTTGAGACTGTGAT+TGG 0.514309 7_3:+70011567 None:intergenic
AGAGACATTGGAAGGTACAA+AGG 0.518746 7_3:-70010847 Msa1120540:CDS
GGATGTAACAAGAAGAGGGA+GGG 0.521548 7_3:+70011657 None:intergenic
CAGATGGATGATACTAAAGT+TGG 0.521577 7_3:-70011255 Msa1120540:CDS
ACAGAAAATTAGATAGTGAC+AGG 0.529982 7_3:-70011723 Msa1120540:five_prime_UTR
GGTTCAAAATCTCAATTCAA+AGG 0.530696 7_3:-70009963 Msa1120540:CDS
CAATGAAGTTCTATTTGCCA+AGG 0.533881 7_3:+70009008 None:intergenic
GAGACATTGGAAGGTACAAA+GGG 0.535583 7_3:-70010846 Msa1120540:CDS
TATCAATGACTGGTTGTGAC+TGG 0.536029 7_3:+70011683 None:intergenic
AAGTTGCGGCAGCTGAGGCA+TGG 0.536231 7_3:-70009532 Msa1120540:CDS
AATCACAGTCTCAACCTCTC+AGG 0.537275 7_3:-70011565 Msa1120540:intron
ATAAAGTTAGTTATATCAGC+TGG 0.538749 7_3:+70009061 None:intergenic
CACCAAGCTAGAAGAGACAT+TGG 0.548216 7_3:-70010859 Msa1120540:CDS
AGTAGGGATGTAACAAGAAG+AGG 0.550259 7_3:+70011652 None:intergenic
GCAAGGCGTTATGAAAGAGT+TGG 0.550969 7_3:-70009729 Msa1120540:CDS
GGTTTACATCAAAGAGAAGA+TGG 0.551787 7_3:-70009414 Msa1120540:CDS
AAAAGGTCAACATGGTGCTA+TGG 0.555928 7_3:-70010671 Msa1120540:CDS
TAGAGTTCAAAGAGAAAGAG+AGG 0.559762 7_3:-70010380 Msa1120540:CDS
TGAAATGAAACTAGCTATGA+CGG 0.561050 7_3:-70010275 Msa1120540:CDS
CAAGGCTAAGGCGAAAATGA+AGG 0.564183 7_3:-70010719 Msa1120540:CDS
TGATTTGTCTATCTCTTCCG+TGG 0.565283 7_3:+70010306 None:intergenic
GCGGGTGAAGCAGCAGACTT+CGG 0.565547 7_3:+70009260 None:intergenic
AGGACTAATGTGCCGAGTTG+CGG 0.566433 7_3:+70009241 None:intergenic
ATATCTAATATGTCAGGTGA+AGG 0.569278 7_3:-70009040 Msa1120540:three_prime_UTR
GGAATCAAGTTACAAGGCTA+AGG 0.570445 7_3:-70010731 Msa1120540:CDS
GGGATGTAACAAGAAGAGGG+AGG 0.576725 7_3:+70011656 None:intergenic
GATTGAGGAATCAAGTTACA+AGG 0.579639 7_3:-70010737 Msa1120540:CDS
GGCATGGATTGAAGCGCTCA+AGG 0.579700 7_3:-70009516 Msa1120540:CDS
GGGAGGGGAGTATCAATGAC+TGG 0.582153 7_3:+70011673 None:intergenic
AGAAGCTGCATCTGCTGCAG+AGG 0.583596 7_3:-70009918 Msa1120540:CDS
TACCGAGTTACAAACCGTAA+AGG 0.586528 7_3:-70010125 Msa1120540:CDS
GAAAGTATGAAACTATTGGA+AGG 0.590746 7_3:-70010181 Msa1120540:CDS
GTAGGGATGTAACAAGAAGA+GGG 0.594732 7_3:+70011653 None:intergenic
GTTTAAGCTAAAGCTTGACG+TGG 0.614923 7_3:-70010578 Msa1120540:CDS
TAATAGTGTAACTTGTGACA+TGG 0.614964 7_3:+70011850 None:intergenic
AACCGTAAAGGAGGAACTTG+AGG 0.624780 7_3:-70010113 Msa1120540:CDS
AATTGAAGCATCAAGCTCGA+AGG 0.624859 7_3:-70010518 Msa1120540:CDS
AATAGTGTAACTTGTGACAT+GGG 0.626337 7_3:+70011851 None:intergenic
CTGCTGCTTCACCCGCAACT+CGG 0.628893 7_3:-70009253 Msa1120540:CDS
GGAAGAGATAGACAAATCAA+AGG 0.630376 7_3:-70010302 Msa1120540:CDS
ATAGAGACACTAGAGAAGAA+GGG 0.635458 7_3:-70010694 Msa1120540:CDS
CGTAAAGGAGGAACTTGAGG+CGG 0.638927 7_3:-70010110 Msa1120540:CDS
AAGACCAGAATTGAAAACAA+TGG 0.643760 7_3:+70009126 None:intergenic
AAGCTAGAAGAGACATTGGA+AGG 0.645006 7_3:-70010855 Msa1120540:CDS
CGAGTTACAAACCGTAAAGG+AGG 0.647932 7_3:-70010122 Msa1120540:CDS
GTTTGAGATTGATACGAGTG+AGG 0.648413 7_3:-70009759 Msa1120540:CDS
AGCGCTCAAGGCGAGCGAGA+AGG 0.649761 7_3:-70009504 Msa1120540:CDS
AACTCAGATGGATTTCGCAG+CGG 0.658178 7_3:-70011139 Msa1120540:CDS
AAGAAGGGAAAAGGTCAACA+TGG 0.660376 7_3:-70010679 Msa1120540:CDS
TGCAAGAAGAGTTAGTAGCG+AGG 0.685330 7_3:-70009390 Msa1120540:CDS
ATGGTGCTATGGTTGTAAGG+AGG 0.699881 7_3:-70010660 Msa1120540:CDS
TTTCGCAGCGGATTTCTCAG+CGG 0.728630 7_3:-70011127 Msa1120540:intron
AAGCAAATACCATACCTGAG+AGG 0.741253 7_3:+70011551 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATGAAAAATAAAAATATG+TGG + chr7_3:70009203-70009222 None:intergenic 15.0%
!!! AAATGAGTTTTCATTAAAAT+TGG - chr7_3:70010443-70010462 Msa1120540:CDS 15.0%
!! AAATTGAAAGATGAGAAAAT+TGG - chr7_3:70009023-70009042 Msa1120540:three_prime_UTR 20.0%
!! AATTGAAAGATGAGAAAATT+GGG - chr7_3:70009024-70009043 Msa1120540:three_prime_UTR 20.0%
!! AACAGTGATAAATAATATAG+AGG + chr7_3:70009274-70009293 None:intergenic 20.0%
!!! TTATTAGTCTATATGATGAT+AGG - chr7_3:70009596-70009615 Msa1120540:CDS 20.0%
!!! CTATCTTTTGTTATAGAAAT+AGG - chr7_3:70009755-70009774 Msa1120540:CDS 20.0%
!! TTGTATATGCATTATTATTG+TGG - chr7_3:70009829-70009848 Msa1120540:CDS 20.0%
!! AGAATTGGAATATCTTAAAA+AGG - chr7_3:70010194-70010213 Msa1120540:CDS 20.0%
!! AAACACAAGAAAAAAGTTAA+AGG - chr7_3:70010467-70010486 Msa1120540:CDS 20.0%
!! AGATATTATAACAACTAAGT+TGG - chr7_3:70011001-70011020 Msa1120540:intron 20.0%
!!! AGAAAGAGTATTAAATCAAA+TGG - chr7_3:70011485-70011504 Msa1120540:intron 20.0%
!! AACTTTATATCTAATATGTC+AGG - chr7_3:70011753-70011772 Msa1120540:five_prime_UTR 20.0%
!! AGTGAATTTAAAACCAAAAG+TGG - chr7_3:70008990-70009009 Msa1120540:three_prime_UTR 25.0%
!! TCATCTTTCAATTTTTGCTT+AGG + chr7_3:70009017-70009036 None:intergenic 25.0%
!!! AATACATGGTGATTGTTTTT+AGG - chr7_3:70009461-70009480 Msa1120540:CDS 25.0%
! TATATGATGATAGGAATCAT+AGG - chr7_3:70009605-70009624 Msa1120540:CDS 25.0%
!! GTTGAATTTTGTCAAAGAAA+TGG - chr7_3:70010575-70010594 Msa1120540:CDS 25.0%
!! AGATGAAAGTATGAAACTAT+TGG - chr7_3:70010614-70010633 Msa1120540:CDS 25.0%
! TAGATACTCGTATTCAAATT+TGG + chr7_3:70011207-70011226 None:intergenic 25.0%
!! ACTGAAAGAAAACATTTTGA+AGG - chr7_3:70011352-70011371 Msa1120540:intron 25.0%
! ATAAAGTTAGTTATATCAGC+TGG + chr7_3:70011741-70011760 None:intergenic 25.0%
! AATAGTGTAACTTGTGACAT+GGG + chr7_3:70008951-70008970 None:intergenic 30.0%
! TAATAGTGTAACTTGTGACA+TGG + chr7_3:70008952-70008971 None:intergenic 30.0%
ACAGAAAATTAGATAGTGAC+AGG - chr7_3:70009076-70009095 Msa1120540:three_prime_UTR 30.0%
TTCAAATGTCCTAACAAGTA+GGG + chr7_3:70009166-70009185 None:intergenic 30.0%
GTGTTGAATATGCTAATACA+TGG - chr7_3:70009447-70009466 Msa1120540:CDS 30.0%
TTCATTGAAGAAAACTCAGA+TGG - chr7_3:70009648-70009667 Msa1120540:CDS 30.0%
AAATCTCTCTTCTATGATTG+AGG - chr7_3:70010047-70010066 Msa1120540:CDS 30.0%
TGATGCTTCAATTTCTTTCT+CGG + chr7_3:70010274-70010293 None:intergenic 30.0%
!! CAAGAAAAGAAGAAGTACTT+AGG - chr7_3:70010316-70010335 Msa1120540:CDS 30.0%
!! AAAAGAAGAAGTACTTAGGA+AGG - chr7_3:70010320-70010339 Msa1120540:CDS 30.0%
CACAAGAAAAAAGTTAAAGG+AGG - chr7_3:70010470-70010489 Msa1120540:CDS 30.0%
TGAAATGAAACTAGCTATGA+CGG - chr7_3:70010524-70010543 Msa1120540:CDS 30.0%
TTGTCAAAGAAATGGAGAAA+AGG - chr7_3:70010583-70010602 Msa1120540:CDS 30.0%
TGTCAAAGAAATGGAGAAAA+GGG - chr7_3:70010584-70010603 Msa1120540:CDS 30.0%
! GAAAGTATGAAACTATTGGA+AGG - chr7_3:70010618-70010637 Msa1120540:CDS 30.0%
TTGGAAGGAAGTTTAAGAAA+AGG - chr7_3:70010633-70010652 Msa1120540:CDS 30.0%
!! TTAGCTTTGATTAGAGATGA+AGG - chr7_3:70010723-70010742 Msa1120540:CDS 30.0%
! AGATGAAGGTTTTCAGTTTA+TGG - chr7_3:70010737-70010756 Msa1120540:CDS 30.0%
! TTTTCAGTTTATGGCTTCTA+TGG - chr7_3:70010746-70010765 Msa1120540:CDS 30.0%
CTTGAAGAAAAACGATTCAT+CGG - chr7_3:70010815-70010834 Msa1120540:CDS 30.0%
GGTTCAAAATCTCAATTCAA+AGG - chr7_3:70010836-70010855 Msa1120540:CDS 30.0%
AGAAACAGATGAAGCTAAAA+TGG - chr7_3:70010959-70010978 Msa1120540:intron 30.0%
TGTTAAAGCTCTTTCTTTCA+TGG + chr7_3:70011156-70011175 None:intergenic 30.0%
! ACTTGCTGATAAAAAAGTTG+CGG - chr7_3:70011253-70011272 Msa1120540:CDS 30.0%
!! AAAACATTTTGAAGGAAGAG+AGG - chr7_3:70011360-70011379 Msa1120540:intron 30.0%
!! AAACATTTTGAAGGAAGAGA+GGG - chr7_3:70011361-70011380 Msa1120540:intron 30.0%
TTTCTCTTCTTAAGAGTGAA+AGG + chr7_3:70011581-70011600 None:intergenic 30.0%
AAAGAAAGTTATCCCGAATT+TGG - chr7_3:70011598-70011617 Msa1120540:five_prime_UTR 30.0%
TGAATAACTTTGCCAAATTC+GGG + chr7_3:70011613-70011632 None:intergenic 30.0%
CTGAATAACTTTGCCAAATT+CGG + chr7_3:70011614-70011633 None:intergenic 30.0%
AAGACCAGAATTGAAAACAA+TGG + chr7_3:70011676-70011695 None:intergenic 30.0%
ATATCTAATATGTCAGGTGA+AGG - chr7_3:70011759-70011778 Msa1120540:five_prime_UTR 30.0%
TAACATCAGAAAAAAGAGTG+AGG - chr7_3:70011822-70011841 Msa1120540:five_prime_UTR 30.0%
! TTTTTGCTTAGGACCACTTT+TGG + chr7_3:70009006-70009025 None:intergenic 35.0%
TTGTTACATCCCTACTTGTT+AGG - chr7_3:70009154-70009173 Msa1120540:exon 35.0%
GTTCAAATGTCCTAACAAGT+AGG + chr7_3:70009167-70009186 None:intergenic 35.0%
TGAATTCATTCCTTCAGCTT+TGG - chr7_3:70009518-70009537 Msa1120540:CDS 35.0%
CAGATGGATGATACTAAAGT+TGG - chr7_3:70009544-70009563 Msa1120540:CDS 35.0%
GTTCTCTTGTTCTTGAAGTA+GGG + chr7_3:70009918-70009937 None:intergenic 35.0%
AGTTCTCTTGTTCTTGAAGT+AGG + chr7_3:70009919-70009938 None:intergenic 35.0%
GATTGAGGAATCAAGTTACA+AGG - chr7_3:70010062-70010081 Msa1120540:CDS 35.0%
ATAGAGACACTAGAGAAGAA+GGG - chr7_3:70010105-70010124 Msa1120540:CDS 35.0%
TGCACATGTAATGAGAGAAT+TGG - chr7_3:70010179-70010198 Msa1120540:CDS 35.0%
AGCAAGTACTTGTTCTTCAT+TGG + chr7_3:70010358-70010377 None:intergenic 35.0%
! AGAACAAGTACTTGCTGAAT+TGG - chr7_3:70010362-70010381 Msa1120540:CDS 35.0%
TAGAGTTCAAAGAGAAAGAG+AGG - chr7_3:70010419-70010438 Msa1120540:CDS 35.0%
AAAAAAGTTAAAGGAGGCCA+CGG - chr7_3:70010476-70010495 Msa1120540:CDS 35.0%
GGAAGAGATAGACAAATCAA+AGG - chr7_3:70010497-70010516 Msa1120540:CDS 35.0%
! AACAACTGAAGCTTTAGCTT+TGG - chr7_3:70011103-70011122 Msa1120540:intron 35.0%
GGTTTACATCAAAGAGAAGA+TGG - chr7_3:70011385-70011404 Msa1120540:intron 35.0%
! TGGCGTTGAATTTACTCTTT+AGG + chr7_3:70011656-70011675 None:intergenic 35.0%
! AACGCCATTGTTTTCAATTC+TGG - chr7_3:70011669-70011688 Msa1120540:five_prime_UTR 35.0%
CAATGAAGTTCTATTTGCCA+AGG + chr7_3:70011794-70011813 None:intergenic 35.0%
! TATCAATGACTGGTTGTGAC+TGG + chr7_3:70009119-70009138 None:intergenic 40.0%
GTAGGGATGTAACAAGAAGA+GGG + chr7_3:70009149-70009168 None:intergenic 40.0%
AGTAGGGATGTAACAAGAAG+AGG + chr7_3:70009150-70009169 None:intergenic 40.0%
AAGCAAATACCATACCTGAG+AGG + chr7_3:70009251-70009270 None:intergenic 40.0%
! TTCCAATGTCTCTTCTAGCT+TGG + chr7_3:70009945-70009964 None:intergenic 40.0%
AAGCTAGAAGAGACATTGGA+AGG - chr7_3:70009944-70009963 Msa1120540:CDS 40.0%
! AGAGACATTGGAAGGTACAA+AGG - chr7_3:70009952-70009971 Msa1120540:CDS 40.0%
! GAGACATTGGAAGGTACAAA+GGG - chr7_3:70009953-70009972 Msa1120540:CDS 40.0%
GGAATCAAGTTACAAGGCTA+AGG - chr7_3:70010068-70010087 Msa1120540:CDS 40.0%
CATAGAGACACTAGAGAAGA+AGG - chr7_3:70010104-70010123 Msa1120540:CDS 40.0%
ACACTAGAGAAGAAGGGAAA+AGG - chr7_3:70010111-70010130 Msa1120540:CDS 40.0%
AAGAAGGGAAAAGGTCAACA+TGG - chr7_3:70010120-70010139 Msa1120540:CDS 40.0%
! AAAAGGTCAACATGGTGCTA+TGG - chr7_3:70010128-70010147 Msa1120540:CDS 40.0%
!! AACATGGTGCTATGGTTGTA+AGG - chr7_3:70010136-70010155 Msa1120540:CDS 40.0%
GTTTAAGCTAAAGCTTGACG+TGG - chr7_3:70010221-70010240 Msa1120540:CDS 40.0%
! CTGTTTTGCAAGAGAAATCG+CGG - chr7_3:70010247-70010266 Msa1120540:CDS 40.0%
! TGTTTTGCAAGAGAAATCGC+GGG - chr7_3:70010248-70010267 Msa1120540:CDS 40.0%
! AATTGAAGCATCAAGCTCGA+AGG - chr7_3:70010281-70010300 Msa1120540:CDS 40.0%
!! GATTGAGGCTTTGAAAGAGT+TGG - chr7_3:70010389-70010408 Msa1120540:CDS 40.0%
! TGATTTGTCTATCTCTTCCG+TGG + chr7_3:70010496-70010515 None:intergenic 40.0%
GAAATGGAGAAAAGGGTTCA+AGG - chr7_3:70010591-70010610 Msa1120540:CDS 40.0%
TTAAGAAAAGGCGACGAATC+AGG - chr7_3:70010645-70010664 Msa1120540:CDS 40.0%
TACCGAGTTACAAACCGTAA+AGG - chr7_3:70010674-70010693 Msa1120540:CDS 40.0%
CTCCTTTACGGTTTGTAACT+CGG + chr7_3:70010679-70010698 None:intergenic 40.0%
TGAGCTGAAGCATGTAACTA+AGG - chr7_3:70010782-70010801 Msa1120540:CDS 40.0%
! GTTTGAGATTGATACGAGTG+AGG - chr7_3:70011040-70011059 Msa1120540:intron 40.0%
ACGAGTGAGGAAAAATTGCA+AGG - chr7_3:70011053-70011072 Msa1120540:intron 40.0%
TTAGTAGCGAGGAGTTTGAT+AGG - chr7_3:70011420-70011439 Msa1120540:intron 40.0%
!! GGAAACTTGGTTCTTTTAGC+AGG + chr7_3:70011521-70011540 None:intergenic 40.0%
!!! TGACTGGTTGTGACTGGTTT+TGG + chr7_3:70009113-70009132 None:intergenic 45.0%
GATGTAACAAGAAGAGGGAG+GGG + chr7_3:70009144-70009163 None:intergenic 45.0%
GGATGTAACAAGAAGAGGGA+GGG + chr7_3:70009145-70009164 None:intergenic 45.0%
TGAGAGGTTGAGACTGTGAT+TGG + chr7_3:70009235-70009254 None:intergenic 45.0%
AATCACAGTCTCAACCTCTC+AGG - chr7_3:70009234-70009253 Msa1120540:CDS 45.0%
! AACTCAGATGGATTTCGCAG+CGG - chr7_3:70009660-70009679 Msa1120540:CDS 45.0%
CACCAAGCTAGAAGAGACAT+TGG - chr7_3:70009940-70009959 Msa1120540:CDS 45.0%
! GAAGGTACAAAGGGAGTAGA+TGG - chr7_3:70009962-70009981 Msa1120540:CDS 45.0%
CAAGGCTAAGGCGAAAATGA+AGG - chr7_3:70010080-70010099 Msa1120540:CDS 45.0%
!! ATGGTGCTATGGTTGTAAGG+AGG - chr7_3:70010139-70010158 Msa1120540:CDS 45.0%
! AAGTACTTGCTGAATTGGCC+AGG - chr7_3:70010367-70010386 Msa1120540:CDS 45.0%
CTCTTTCAAAGCCTCAATCC+TGG + chr7_3:70010388-70010407 None:intergenic 45.0%
!! TGAGGCTTTGAAAGAGTTGG+AGG - chr7_3:70010392-70010411 Msa1120540:CDS 45.0%
CGAGTTACAAACCGTAAAGG+AGG - chr7_3:70010677-70010696 Msa1120540:CDS 45.0%
AACCGTAAAGGAGGAACTTG+AGG - chr7_3:70010686-70010705 Msa1120540:CDS 45.0%
! GCAAGGCGTTATGAAAGAGT+TGG - chr7_3:70011070-70011089 Msa1120540:intron 45.0%
TAAAAAAGTTGCGGCAGCTG+AGG - chr7_3:70011262-70011281 Msa1120540:exon 45.0%
GAGCGAGAAGGAAATACTAC+TGG - chr7_3:70011307-70011326 Msa1120540:intron 45.0%
!! CATTTTGAAGGAAGAGAGGG+AGG - chr7_3:70011364-70011383 Msa1120540:intron 45.0%
TGCAAGAAGAGTTAGTAGCG+AGG - chr7_3:70011409-70011428 Msa1120540:intron 45.0%
!! GGTGAAGGATTTTCAAGCCT+TGG - chr7_3:70011774-70011793 Msa1120540:five_prime_UTR 45.0%
!!! TTTTATCTTTATATATATTT+AGG + chr7_3:70009051-70009070 None:intergenic 5.0%
GGGATGTAACAAGAAGAGGG+AGG + chr7_3:70009146-70009165 None:intergenic 50.0%
CAGTCTCAACCTCTCAGGTA+TGG - chr7_3:70009239-70009258 Msa1120540:CDS 50.0%
CCATCTGTTGCCAAAGCTGA+AGG + chr7_3:70009531-70009550 None:intergenic 50.0%
! CCTTCAGCTTTGGCAACAGA+TGG - chr7_3:70009528-70009547 Msa1120540:CDS 50.0%
! TTTCGCAGCGGATTTCTCAG+CGG - chr7_3:70009672-70009691 Msa1120540:CDS 50.0%
TGCTGAATTGGCCAGGATTG+AGG - chr7_3:70010374-70010393 Msa1120540:CDS 50.0%
CGCCTCAAGTTCCTCCTTTA+CGG + chr7_3:70010691-70010710 None:intergenic 50.0%
CGTAAAGGAGGAACTTGAGG+CGG - chr7_3:70010689-70010708 Msa1120540:CDS 50.0%
AGCAGCAGACTTCGGAAACT+TGG + chr7_3:70011534-70011553 None:intergenic 50.0%
AGGACTAATGTGCCGAGTTG+CGG + chr7_3:70011561-70011580 None:intergenic 50.0%
!! GGGAGGGGAGTATCAATGAC+TGG + chr7_3:70009129-70009148 None:intergenic 55.0%
AGAAGCTGCATCTGCTGCAG+AGG - chr7_3:70010881-70010900 Msa1120540:CDS 55.0%
! GGCATGGATTGAAGCGCTCA+AGG - chr7_3:70011283-70011302 Msa1120540:intron 55.0%
GGACTAATGTGCCGAGTTGC+GGG + chr7_3:70011560-70011579 None:intergenic 55.0%
AAGTTGCGGCAGCTGAGGCA+TGG - chr7_3:70011267-70011286 Msa1120540:exon 60.0%
GCGGGTGAAGCAGCAGACTT+CGG + chr7_3:70011542-70011561 None:intergenic 60.0%
! CTGCTGCTTCACCCGCAACT+CGG - chr7_3:70011546-70011565 Msa1120540:intron 60.0%
AGCGCTCAAGGCGAGCGAGA+AGG - chr7_3:70011295-70011314 Msa1120540:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 70008895 70011926 70008895 ID=Msa1120540;Name=Msa1120540
chr7_3 mRNA 70008895 70011926 70008895 ID=Msa1120540-mRNA-1;Parent=Msa1120540;Name=Msa1120540-mRNA-1;_AED=0.04;_eAED=0.04;_QI=373|1|1|1|0.5|0.33|3|262|632
chr7_3 exon 70008895 70010908 70008895 ID=Msa1120540-mRNA-1:exon:17821;Parent=Msa1120540-mRNA-1
chr7_3 exon 70011128 70011286 70011128 ID=Msa1120540-mRNA-1:exon:17820;Parent=Msa1120540-mRNA-1
chr7_3 exon 70011566 70011926 70011566 ID=Msa1120540-mRNA-1:exon:17819;Parent=Msa1120540-mRNA-1
chr7_3 five_prime_UTR 70011566 70011926 70011566 ID=Msa1120540-mRNA-1:five_prime_utr;Parent=Msa1120540-mRNA-1
chr7_3 five_prime_UTR 70011275 70011286 70011275 ID=Msa1120540-mRNA-1:five_prime_utr;Parent=Msa1120540-mRNA-1
chr7_3 CDS 70011128 70011274 70011128 ID=Msa1120540-mRNA-1:cds;Parent=Msa1120540-mRNA-1
chr7_3 CDS 70009157 70010908 70009157 ID=Msa1120540-mRNA-1:cds;Parent=Msa1120540-mRNA-1
chr7_3 three_prime_UTR 70008895 70009156 70008895 ID=Msa1120540-mRNA-1:three_prime_utr;Parent=Msa1120540-mRNA-1
Gene Sequence

>Msa1120540

ATGGATGATACTAAAGTTGGTATGAGAAGAGTTAGATCAGTTAAAGATGTTATTAGTCTATATGATGATAGGAATCATAGGACTGCTGATAGTGATAGTTCTTCATTGAAGAAAACTCAGATGGATTTCGCAGCGGATTTCTCAGCGAACCCTACTTCAAGAACAAGAGAACTACACCAAGCTAGAAGAGACATTGGAAGGTACAAAGGGAGTAGATGGACAGCAGAATCTGCAAAATCTCAAGCTGAATCTGAGCTTTCAAATGCTAAAAAGACAATGAAAAATCTCTCTTCTATGATTGAGGAATCAAGTTACAAGGCTAAGGCGAAAATGAAGGACATAGAGACACTAGAGAAGAAGGGAAAAGGTCAACATGGTGCTATGGTTGTAAGGAGGAATGAGAATTATGAGTATGCACATGTAATGAGAGAATTGGAATATCTTAAAAAGGAATTGTTTAAGCTAAAGCTTGACGTGGCTTCTGTTTTGCAAGAGAAATCGCGGGCCGAGAAAGAAATTGAAGCATCAAGCTCGAAGGTGATCGATTGTTCAAGAAAAGAAGAAGTACTTAGGAAGGAGATTGAAGAAGCCAATGAAGAACAAGTACTTGCTGAATTGGCCAGGATTGAGGCTTTGAAAGAGTTGGAGGATATTAGAGTTCAAAGAGAAAGAGAGGCAAATGAGTTTTCATTAAAATTGGAAAACACAAGAAAAAAGTTAAAGGAGGCCACGGAAGAGATAGACAAATCAAAGGAACTTGAAATGAAACTAGCTATGACGGTTTCAGACGTTGATCTGTTGCAGATTCAGTTGAATTTTGTCAAAGAAATGGAGAAAAGGGTTCAAGGAGATGAAAGTATGAAACTATTGGAAGGAAGTTTAAGAAAAGGCGACGAATCAGGAGACTCTACCGAGTTACAAACCGTAAAGGAGGAACTTGAGGCGGCAACGAAAGAATTAGCTTTGATTAGAGATGAAGGTTTTCAGTTTATGGCTTCTATGGATGTTATAAGAAATGAGCTGAAGCATGTAACTAAGGAAATAGCTCGCTTGAAGAAAAACGATTCATCGGTTCAAAATCTCAATTCAAAGGTTCTAAGAACAAAATCTAAGCTAGAAGCTGCATCTGCTGCAGAGGAAAAAGCGAGATCATTAGTAGTTAGTCTATCTCATTCTCTTGACACTCTGAAGAAAGAAACAGATGAAGCTAAAATGGAAAAAGAGCACATATCTCAAGATATTATAACAACTAAGTTGGAAATTGAAAAAACTGAGTTTGAGATTGATACGAGTGAGGAAAAATTGCAAGGCGTTATGAAAGAGTTGGAAGAAGCAAAAACAACTGAAGCTTTAGCTTTGGAGAAGCTTAAAACACTTTCTGAGACTACCATGAAAGAAAGAGCTTTAACAGCAAAACATAGTTCGTCGATTACTATCTCCAAATTTGAATACGAGTATCTAACTAATCATGCAGCTGCAGCAGAAGAACTTGCTGATAAAAAAGTTGCGGCAGCTGAGGCATGGATTGAAGCGCTCAAGGCGAGCGAGAAGGAAATACTACTGGAAACAAAAATAGTTCAAAGAGAACTGAAAGAAAACATTTTGAAGGAAGAGAGGGAGGTTTACATCAAAGAGAAGATGGCTGCAAGAAGAGTTAGTAGCGAGGAGTTTGATAGGACAAGAAAACGCGAGAAGAGTTCGTCACAGACAGCTATTTCTAGAAAGAGTATTAAATCAAATGGAAGTATGACTCCTGCTAAAAGAACCAAGTTTCCGAAGTCTGCTGCTTCACCCGCAACTCGGCACATTAGTCCTTTCACTCTTAAGAAGAGAAAGAAAGTTATCCCGAATTTGGCAAAGTTATTCAGTAGCAAGAAAAACACTATGCCTAAAGAGTAA

Protein sequence

>Msa1120540

MDDTKVGMRRVRSVKDVISLYDDRNHRTADSDSSSLKKTQMDFAADFSANPTSRTRELHQARRDIGRYKGSRWTAESAKSQAESELSNAKKTMKNLSSMIEESSYKAKAKMKDIETLEKKGKGQHGAMVVRRNENYEYAHVMRELEYLKKELFKLKLDVASVLQEKSRAEKEIEASSSKVIDCSRKEEVLRKEIEEANEEQVLAELARIEALKELEDIRVQREREANEFSLKLENTRKKLKEATEEIDKSKELEMKLAMTVSDVDLLQIQLNFVKEMEKRVQGDESMKLLEGSLRKGDESGDSTELQTVKEELEAATKELALIRDEGFQFMASMDVIRNELKHVTKEIARLKKNDSSVQNLNSKVLRTKSKLEAASAAEEKARSLVVSLSHSLDTLKKETDEAKMEKEHISQDIITTKLEIEKTEFEIDTSEEKLQGVMKELEEAKTTEALALEKLKTLSETTMKERALTAKHSSSITISKFEYEYLTNHAAAAEELADKKVAAAEAWIEALKASEKEILLETKIVQRELKENILKEEREVYIKEKMAARRVSSEEFDRTRKREKSSSQTAISRKSIKSNGSMTPAKRTKFPKSAASPATRHISPFTLKKRKKVIPNLAKLFSSKKNTMPKE*