Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582740 | RDY14692.1 | 90.722 | 97 | 9 | 0 | 1 | 97 | 4 | 100 | 7.75e-56 | 178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582740 | sp|Q49L15|PSBK_EUCGG | 91.667 | 60 | 5 | 0 | 1 | 60 | 1 | 60 | 1.80e-32 | 110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582740 | A0A371II05 | 90.722 | 97 | 9 | 0 | 1 | 97 | 4 | 100 | 3.70e-56 | 178 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017120 | Msa0582740 | 0.811635 | 6.345215e-51 | -8.615850e-47 |
| Msa0035090 | Msa0582740 | 0.810689 | 1.017103e-50 | -8.615850e-47 |
| Msa0039200 | Msa0582740 | 0.814897 | 1.219140e-51 | -8.615850e-47 |
| Msa0040190 | Msa0582740 | 0.805981 | 1.026780e-49 | -8.615850e-47 |
| Msa0065390 | Msa0582740 | 0.803941 | 2.740735e-49 | -8.615850e-47 |
| Msa0086820 | Msa0582740 | 0.814848 | 1.249710e-51 | -8.615850e-47 |
| Msa0087880 | Msa0582740 | 0.814879 | 1.230338e-51 | -8.615850e-47 |
| Msa0092750 | Msa0582740 | 0.807061 | 6.074077e-50 | -8.615850e-47 |
| Msa0095140 | Msa0582740 | 0.873782 | 1.126046e-67 | -8.615850e-47 |
| Msa0095180 | Msa0582740 | 0.808732 | 2.680616e-50 | -8.615850e-47 |
| Msa0095200 | Msa0582740 | 0.855526 | 5.945118e-62 | -8.615850e-47 |
| Msa0095240 | Msa0582740 | 0.833708 | 4.565256e-56 | -8.615850e-47 |
| Msa0095270 | Msa0582740 | 0.859064 | 5.353362e-63 | -8.615850e-47 |
| Msa0095300 | Msa0582740 | 0.815911 | 7.251912e-52 | -8.615850e-47 |
| Msa0103780 | Msa0582740 | 0.806363 | 8.529094e-50 | -8.615850e-47 |
| Msa0110710 | Msa0582740 | 0.803610 | 3.210765e-49 | -8.615850e-47 |
| Msa0130120 | Msa0582740 | 0.801795 | 7.608068e-49 | -8.615850e-47 |
| Msa0133670 | Msa0582740 | 0.817813 | 2.714767e-52 | -8.615850e-47 |
| Msa0133880 | Msa0582740 | 0.821572 | 3.759566e-53 | -8.615850e-47 |
| Msa0134550 | Msa0582740 | 0.811874 | 5.628610e-51 | -8.615850e-47 |
| Msa0139740 | Msa0582740 | 0.802387 | 5.746700e-49 | -8.615850e-47 |
| Msa0141670 | Msa0582740 | 0.829397 | 5.265563e-55 | -8.615850e-47 |
| Msa0157020 | Msa0582740 | 0.806941 | 6.441918e-50 | -8.615850e-47 |
| Msa0175900 | Msa0582740 | 0.825125 | 5.557261e-54 | -8.615850e-47 |
| Msa0180980 | Msa0582740 | 0.800436 | 1.442572e-48 | -8.615850e-47 |
| Msa0184120 | Msa0582740 | 0.815145 | 1.073831e-51 | -8.615850e-47 |
| Msa0221860 | Msa0582740 | 0.826701 | 2.348079e-54 | -8.615850e-47 |
| Msa0222070 | Msa0582740 | 0.821621 | 3.662318e-53 | -8.615850e-47 |
| Msa0222120 | Msa0582740 | 0.821533 | 3.838210e-53 | -8.615850e-47 |
| Msa0227290 | Msa0582740 | 0.808103 | 3.650260e-50 | -8.615850e-47 |
| Msa0365150 | Msa0582740 | 0.822311 | 2.535261e-53 | -8.615850e-47 |
| Msa0417630 | Msa0582740 | 0.810613 | 1.056551e-50 | -8.615850e-47 |
| Msa0427050 | Msa0582740 | 0.815574 | 8.624313e-52 | -8.615850e-47 |
| Msa0449930 | Msa0582740 | 0.810535 | 1.098576e-50 | -8.615850e-47 |
| Msa0473450 | Msa0582740 | 0.823690 | 1.209085e-53 | -8.615850e-47 |
| Msa0482020 | Msa0582740 | 0.815516 | 8.881238e-52 | -8.615850e-47 |
| Msa0263620 | Msa0582740 | 0.819940 | 8.921138e-53 | -8.615850e-47 |
| Msa0268180 | Msa0582740 | 0.904891 | 7.636451e-80 | -8.615850e-47 |
| Msa0268220 | Msa0582740 | 0.826437 | 2.714389e-54 | -8.615850e-47 |
| Msa0268340 | Msa0582740 | 0.846946 | 1.577447e-59 | -8.615850e-47 |
| Msa0268380 | Msa0582740 | 0.896484 | 3.530902e-76 | -8.615850e-47 |
| Msa0268420 | Msa0582740 | 0.909980 | 3.122742e-82 | -8.615850e-47 |
| Msa0268460 | Msa0582740 | 0.846255 | 2.435568e-59 | -8.615850e-47 |
| Msa0268500 | Msa0582740 | 0.855083 | 8.001707e-62 | -8.615850e-47 |
| Msa0268540 | Msa0582740 | 0.900006 | 1.127095e-77 | -8.615850e-47 |
| Msa0268650 | Msa0582740 | 0.887892 | 9.564593e-73 | -8.615850e-47 |
| Msa0268680 | Msa0582740 | 0.803678 | 3.109195e-49 | -8.615850e-47 |
| Msa0268690 | Msa0582740 | 0.852058 | 5.921678e-61 | -8.615850e-47 |
| Msa0268730 | Msa0582740 | 0.909660 | 4.453266e-82 | -8.615850e-47 |
| Msa0268760 | Msa0582740 | 0.806885 | 6.618207e-50 | -8.615850e-47 |
| Msa0268850 | Msa0582740 | 0.905613 | 3.567696e-80 | -8.615850e-47 |
| Msa0268900 | Msa0582740 | 0.854866 | 9.251969e-62 | -8.615850e-47 |
| Msa0268930 | Msa0582740 | 0.898820 | 3.646598e-77 | -8.615850e-47 |
| Msa0269060 | Msa0582740 | 0.903018 | 5.345986e-79 | -8.615850e-47 |
| Msa0269100 | Msa0582740 | 0.840526 | 8.245184e-58 | -8.615850e-47 |
| Msa0301800 | Msa0582740 | 0.801247 | 9.850280e-49 | -8.615850e-47 |
| Msa0304870 | Msa0582740 | 0.800979 | 1.117970e-48 | -8.615850e-47 |
| Msa0306130 | Msa0582740 | 0.832259 | 1.046771e-55 | -8.615850e-47 |
| Msa0341260 | Msa0582740 | 0.802794 | 4.737618e-49 | -8.615850e-47 |
| Msa0344200 | Msa0582740 | 0.860988 | 1.407027e-63 | -8.615850e-47 |
| Msa0344240 | Msa0582740 | 0.840020 | 1.117696e-57 | -8.615850e-47 |
| Msa0344250 | Msa0582740 | 0.825809 | 3.828978e-54 | -8.615850e-47 |
| Msa0530210 | Msa0582740 | 0.802167 | 6.380548e-49 | -8.615850e-47 |
| Msa0547050 | Msa0582740 | 0.817219 | 3.693014e-52 | -8.615850e-47 |
| Msa0558890 | Msa0582740 | 0.815632 | 8.367346e-52 | -8.615850e-47 |
| Msa0582530 | Msa0582740 | 0.869003 | 4.285740e-66 | -8.615850e-47 |
| Msa0582570 | Msa0582740 | 0.832448 | 9.397574e-56 | -8.615850e-47 |
| Msa0582580 | Msa0582740 | 0.845476 | 3.966889e-59 | -8.615850e-47 |
| Msa0582620 | Msa0582740 | 0.923289 | 3.229222e-89 | -8.615850e-47 |
| Msa0582710 | Msa0582740 | 0.865136 | 7.349265e-65 | -8.615850e-47 |
| Msa0582740 | Msa0582830 | 0.854052 | 1.591186e-61 | -8.615850e-47 |
| Msa0582740 | Msa0582900 | 0.916953 | 9.564257e-86 | -8.615850e-47 |
| Msa0582740 | Msa0591370 | 0.816591 | 5.110059e-52 | -8.615850e-47 |
| Msa0582740 | Msa0591390 | 0.802445 | 5.590315e-49 | -8.615850e-47 |
| Msa0582740 | Msa0595780 | 0.809250 | 2.076230e-50 | -8.615850e-47 |
| Msa0582740 | Msa0601780 | 0.817660 | 2.939511e-52 | -8.615850e-47 |
| Msa0582740 | Msa0606060 | 0.802003 | 6.892873e-49 | -8.615850e-47 |
| Msa0582740 | Msa0606140 | 0.803704 | 3.070764e-49 | -8.615850e-47 |
| Msa0582740 | Msa0640880 | 0.821965 | 3.049619e-53 | -8.615850e-47 |
| Msa0582740 | Msa0653710 | 0.808339 | 3.250722e-50 | -8.615850e-47 |
| Msa0582740 | Msa0654060 | 0.816038 | 6.793586e-52 | -8.615850e-47 |
| Msa0582740 | Msa0662850 | 0.819709 | 1.007516e-52 | -8.615850e-47 |
| Msa0582740 | Msa0681890 | 0.810594 | 1.066753e-50 | -8.615850e-47 |
| Msa0582740 | Msa0686610 | 0.809498 | 1.837077e-50 | -8.615850e-47 |
| Msa0582740 | Msa0702070 | 0.801020 | 1.096426e-48 | -8.615850e-47 |
| Msa0582740 | Msa0705030 | 0.809271 | 2.055078e-50 | -8.615850e-47 |
| Msa0582740 | Msa0727020 | 0.850188 | 1.995555e-60 | -8.615850e-47 |
| Msa0582740 | Msa0739570 | 0.817872 | 2.631610e-52 | -8.615850e-47 |
| Msa0582740 | Msa0766880 | 0.824784 | 6.689324e-54 | -8.615850e-47 |
| Msa0582740 | Msa0772210 | 0.829306 | 5.542360e-55 | -8.615850e-47 |
| Msa0582740 | Msa0782330 | 0.826365 | 2.823954e-54 | -8.615850e-47 |
| Msa0582740 | Msa0786090 | 0.800242 | 1.580189e-48 | -8.615850e-47 |
| Msa0582740 | Msa0793700 | 0.800399 | 1.468060e-48 | -8.615850e-47 |
| Msa0582740 | Msa0804930 | 0.815439 | 9.241964e-52 | -8.615850e-47 |
| Msa0582740 | Msa0855490 | 0.812584 | 3.939953e-51 | -8.615850e-47 |
| Msa0582740 | Msa0860270 | 0.829652 | 4.566149e-55 | -8.615850e-47 |
| Msa0582740 | Msa0900320 | 0.814692 | 1.353634e-51 | -8.615850e-47 |
| Msa0582740 | Msa0924860 | 0.844062 | 9.541482e-59 | -8.615850e-47 |
| Msa0582740 | Msa0924890 | 0.810742 | 9.910897e-51 | -8.615850e-47 |
| Msa0582740 | Msa0925020 | 0.823256 | 1.527625e-53 | -8.615850e-47 |
| Msa0582740 | Msa0931090 | 0.889471 | 2.352147e-73 | -8.615850e-47 |
| Msa0582740 | Msa0931150 | 0.876752 | 1.087317e-68 | -8.615850e-47 |
| Msa0582740 | Msa0931200 | 0.862520 | 4.781872e-64 | -8.615850e-47 |
| Msa0582740 | Msa0931280 | 0.862516 | 4.793680e-64 | -8.615850e-47 |
| Msa0582740 | Msa0958020 | 0.812059 | 5.128048e-51 | -8.615850e-47 |
| Msa0582740 | Msa0965960 | 0.802098 | 6.591403e-49 | -8.615850e-47 |
| Msa0582740 | Msa0978000 | 0.805962 | 1.036320e-49 | -8.615850e-47 |
| Msa0582740 | Msa0983670 | 0.826185 | 3.116720e-54 | -8.615850e-47 |
| Msa0582740 | Msa0983710 | 0.870699 | 1.197937e-66 | -8.615850e-47 |
| Msa0582740 | Msa0992570 | 0.840258 | 9.690462e-58 | -8.615850e-47 |
| Msa0582740 | Msa0992590 | 0.824289 | 8.750325e-54 | -8.615850e-47 |
| Msa0582740 | Msa1002040 | 0.837189 | 6.018756e-57 | -8.615850e-47 |
| Msa0582740 | Msa1024580 | 0.822000 | 2.993981e-53 | -8.615850e-47 |
| Msa0582740 | Msa1030280 | 0.857336 | 1.749780e-62 | -8.615850e-47 |
| Msa0582740 | Msa1040770 | 0.804760 | 1.850476e-49 | -8.615850e-47 |
| Msa0582740 | Msa1049440 | 0.820140 | 8.027286e-53 | -8.615850e-47 |
| Msa0582740 | Msa1070900 | 0.804968 | 1.674623e-49 | -8.615850e-47 |
| Msa0582740 | Msa1086020 | 0.853477 | 2.328414e-61 | -8.615850e-47 |
| Msa0582740 | Msa1086060 | 0.914000 | 3.199215e-84 | -8.615850e-47 |
| Msa0582740 | Msa1086160 | 0.856494 | 3.097648e-62 | -8.615850e-47 |
| Msa0582740 | Msa1086170 | 0.905178 | 5.646181e-80 | -8.615850e-47 |
| Msa0582740 | Msa1086260 | 0.821183 | 4.623292e-53 | -8.615850e-47 |
| Msa0582740 | Msa1086290 | 0.883191 | 5.527604e-71 | -8.615850e-47 |
| Msa0582740 | Msa1086330 | 0.824721 | 6.924915e-54 | -8.615850e-47 |
| Msa0582740 | Msa1086340 | 0.856418 | 3.260152e-62 | -8.615850e-47 |
| Msa0582740 | Msa1086370 | 0.879826 | 9.073389e-70 | -8.615850e-47 |
| Msa0582740 | Msa1086410 | 0.812144 | 4.915523e-51 | -8.615850e-47 |
| Msa0582740 | Msa1086440 | 0.852622 | 4.091006e-61 | -8.615850e-47 |
| Msa0582740 | Msa1086480 | 0.859141 | 5.077645e-63 | -8.615850e-47 |
| Msa0582740 | Msa1086520 | 0.829757 | 4.305554e-55 | -8.615850e-47 |
| Msa0582740 | Msa1086630 | 0.841686 | 4.087547e-58 | -8.615850e-47 |
| Msa0582740 | Msa1086690 | 0.838313 | 3.097930e-57 | -8.615850e-47 |
| Msa0582740 | Msa1086830 | 0.835134 | 2.001843e-56 | -8.615850e-47 |
| Msa0582740 | Msa1086870 | 0.885388 | 8.486418e-72 | -8.615850e-47 |
| Msa0582740 | Msa1087000 | 0.815150 | 1.071339e-51 | -8.615850e-47 |
| Msa0582740 | Msa1090230 | 0.807626 | 4.610941e-50 | -8.615850e-47 |
| Msa0582740 | Msa1091690 | 0.846676 | 1.870745e-59 | -8.615850e-47 |
| Msa0582740 | Msa1120540 | 0.817924 | 2.562365e-52 | -8.615850e-47 |
| Msa0582740 | Msa1123340 | 0.817329 | 3.489442e-52 | -8.615850e-47 |
| Msa0582740 | Msa1124440 | 0.807475 | 4.963645e-50 | -8.615850e-47 |
| Msa0582740 | Msa1143140 | 0.888967 | 3.687664e-73 | -8.615850e-47 |
| Msa0582740 | Msa1143150 | 0.865988 | 3.958551e-65 | -8.615850e-47 |
| Msa0582740 | Msa1157160 | 0.835716 | 1.426949e-56 | -8.615850e-47 |
| Msa0582740 | Msa1166180 | 0.804076 | 2.569665e-49 | -8.615850e-47 |
| Msa0582740 | Msa1166280 | 0.801648 | 8.154632e-49 | -8.615850e-47 |
| Msa0582740 | Msa1195860 | 0.810756 | 9.841447e-51 | -8.615850e-47 |
| Msa0582740 | Msa1209390 | 0.817341 | 3.467499e-52 | -8.615850e-47 |
| Msa0582740 | Msa1215210 | 0.801267 | 9.759237e-49 | -8.615850e-47 |
| Msa0582740 | Msa1284030 | 0.821312 | 4.317937e-53 | -8.615850e-47 |
| Msa0582740 | Msa1298740 | 0.807470 | 4.976125e-50 | -8.615850e-47 |
| Msa0582740 | Msa1309910 | 0.816723 | 4.774955e-52 | -8.615850e-47 |
| Msa0582740 | Msa1323060 | 0.817779 | 2.762951e-52 | -8.615850e-47 |
| Msa0582740 | Msa1327820 | 0.814642 | 1.388209e-51 | -8.615850e-47 |
| Msa0582740 | Msa1354850 | 0.850277 | 1.884197e-60 | -8.615850e-47 |
| Msa0582740 | Msa1354890 | 0.918894 | 8.868017e-87 | -8.615850e-47 |
| Msa0582740 | Msa1355020 | 0.836224 | 1.060789e-56 | -8.615850e-47 |
| Msa0582740 | Msa1355060 | 0.913572 | 5.266407e-84 | -8.615850e-47 |
| Msa0582740 | Msa1367940 | 0.802260 | 6.103011e-49 | -8.615850e-47 |
| Msa0582740 | Msa1380540 | 0.836280 | 1.026655e-56 | -8.615850e-47 |
| Msa0582740 | Msa1380580 | 0.865710 | 4.846620e-65 | -8.615850e-47 |
| Msa0582740 | Msa1385940 | 0.826779 | 2.249774e-54 | -8.615850e-47 |
| Msa0582740 | Msa1394050 | 0.850174 | 2.013758e-60 | -8.615850e-47 |
| Msa0582740 | Msa1394090 | 0.840310 | 9.391049e-58 | -8.615850e-47 |
| Msa0582740 | Msa1394100 | 0.844284 | 8.315308e-59 | -8.615850e-47 |
| Msa0582740 | Msa1394140 | 0.882227 | 1.242618e-70 | -8.615850e-47 |
| Msa0582740 | Msa1394170 | 0.806830 | 6.798092e-50 | -8.615850e-47 |
| Msa0582740 | Msa1394240 | 0.865923 | 4.152248e-65 | -8.615850e-47 |
| Msa0582740 | Msa1394280 | 0.826112 | 3.242802e-54 | -8.615850e-47 |
| Msa0582740 | Msa1406230 | 0.802928 | 4.443927e-49 | -8.615850e-47 |
| Msa0582740 | Msa1415120 | 0.806648 | 7.427033e-50 | -8.615850e-47 |
| Msa0582740 | Msa1422750 | 0.830744 | 2.472110e-55 | -8.615850e-47 |
| Msa0582740 | Msa1442300 | 0.802379 | 5.769733e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582740 | MtrunA17_Chr4g0015681 | 96.667 | 60 | 2 | 0 | 1 | 60 | 1 | 60 | 7.64e-35 | 113 |
| Msa0582740 | MtrunA17_CPg0492901 | 96.667 | 60 | 2 | 0 | 1 | 60 | 1 | 60 | 7.64e-35 | 113 |
| Msa0582740 | MtrunA17_Chr4g0016771 | 96.667 | 60 | 2 | 0 | 1 | 60 | 1 | 60 | 7.64e-35 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0582740 | ATCG00070.1 | 76.667 | 60 | 14 | 0 | 1 | 60 | 1 | 60 | 3.76e-26 | 92.0 |
| Msa0582740 | ATCG00080.1 | 97.222 | 36 | 1 | 0 | 62 | 97 | 1 | 36 | 2.92e-19 | 73.9 |
Find 6 sgRNAs with CRISPR-Local
Find 30 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGCTTAATATCTTTAGCT+TGG | 0.440922 | 4_2:+1186551 | None:intergenic |
| ACTGGCATAAAATCTACAAT+TGG | 0.453871 | 4_2:-1186654 | None:intergenic |
| AATGATCCAGGACGTAATCC+TGG | 0.474800 | 4_2:+1187201 | Msa0582740:CDS |
| GGATTCCTATCTAATGATCC+AGG | 0.536202 | 4_2:+1187189 | Msa0582740:CDS |
| TCACGTCCAGGATTACGTCC+TGG | 0.548081 | 4_2:-1187207 | None:intergenic |
| TACGTCCTGGATCATTAGAT+AGG | 0.581605 | 4_2:-1187194 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCCAAATATTAAAATTTT+TGG | + | chr4_2:1186841-1186860 | Msa0582740:intron | 10.0% |
| !!! | TATCCAAAAATTTTAATATT+TGG | - | chr4_2:1186847-1186866 | None:intergenic | 10.0% |
| !! | ATTTCAAAAAAAAAAAACTT+AGG | - | chr4_2:1186998-1187017 | None:intergenic | 10.0% |
| !!! | AATTTTAATATTTGGAATCA+AGG | - | chr4_2:1186839-1186858 | None:intergenic | 15.0% |
| !!! | CGTTTTTTTTTTAATTATCT+TGG | + | chr4_2:1187093-1187112 | Msa0582740:intron | 15.0% |
| !! | GAAAAAACTACTTGAATAAA+GGG | - | chr4_2:1186598-1186617 | None:intergenic | 20.0% |
| !! | AGAAAAAACTACTTGAATAA+AGG | - | chr4_2:1186599-1186618 | None:intergenic | 20.0% |
| !!! | TTATTCAAGTAGTTTTTTCT+TGG | + | chr4_2:1186599-1186618 | Msa0582740:CDS | 20.0% |
| !! | TGAAAATTCTATTATTCGAT+TGG | + | chr4_2:1186885-1186904 | Msa0582740:intron | 20.0% |
| !!! | TGTGGATATGAAAAAAATTT+TGG | + | chr4_2:1186936-1186955 | Msa0582740:intron | 20.0% |
| !! | TCTTATAAACTTAGTATCAA+AGG | + | chr4_2:1187027-1187046 | Msa0582740:intron | 20.0% |
| !!! | TTTTTCTCTTAGCTTTTGTT+TGG | + | chr4_2:1186691-1186710 | Msa0582740:CDS | 25.0% |
| !!! | TTTGTTTCTCTTTTCATCTT+CGG | + | chr4_2:1187168-1187187 | Msa0582740:CDS | 25.0% |
| ! | AATTGGATTCAAAAAAGCGT+AGG | - | chr4_2:1186640-1186659 | None:intergenic | 30.0% |
| ACTGGCATAAAATCTACAAT+TGG | - | chr4_2:1186657-1186676 | None:intergenic | 30.0% | |
| !! | AAAAAGAGTAAGGGTATTAC+TGG | - | chr4_2:1186675-1186694 | None:intergenic | 30.0% |
| GCTAAGAGAAAAAAGAGTAA+GGG | - | chr4_2:1186684-1186703 | None:intergenic | 30.0% | |
| AGCTAAGAGAAAAAAGAGTA+AGG | - | chr4_2:1186685-1186704 | None:intergenic | 30.0% | |
| !! | AATCAAGATCTAGGTATTGG+TGG | - | chr4_2:1186917-1186936 | None:intergenic | 35.0% |
| CACAATCAAGATCTAGGTAT+TGG | - | chr4_2:1186920-1186939 | None:intergenic | 35.0% | |
| CAATACCTAGATCTTGATTG+TGG | + | chr4_2:1186918-1186937 | Msa0582740:intron | 35.0% | |
| CATATCCACAATCAAGATCT+AGG | - | chr4_2:1186926-1186945 | None:intergenic | 35.0% | |
| GAGAATCTATTCTCTTTCTC+TGG | + | chr4_2:1187070-1187089 | Msa0582740:intron | 35.0% | |
| ! | TTCAAAAAAGCGTAGGCTTC+AGG | - | chr4_2:1186633-1186652 | None:intergenic | 40.0% |
| GGATTCCTATCTAATGATCC+AGG | + | chr4_2:1187189-1187208 | Msa0582740:CDS | 40.0% | |
| TACGTCCTGGATCATTAGAT+AGG | - | chr4_2:1187197-1187216 | None:intergenic | 40.0% | |
| !! | CAAGATCTAGGTATTGGTGG+TGG | - | chr4_2:1186914-1186933 | None:intergenic | 45.0% |
| AATGATCCAGGACGTAATCC+TGG | + | chr4_2:1187201-1187220 | Msa0582740:CDS | 45.0% | |
| !!! | AATAAATTCTTAATTTTTTT+CGG | - | chr4_2:1186762-1186781 | None:intergenic | 5.0% |
| TCACGTCCAGGATTACGTCC+TGG | - | chr4_2:1187210-1187229 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 1186552 | 1187236 | 1186552 | ID=Msa0582740;Name=Msa0582740 |
| chr4_2 | mRNA | 1186552 | 1187236 | 1186552 | ID=Msa0582740-mRNA-1;Parent=Msa0582740;Name=Msa0582740-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|0|0|2|0|97 |
| chr4_2 | exon | 1186552 | 1186726 | 1186552 | ID=Msa0582740-mRNA-1:exon:298;Parent=Msa0582740-mRNA-1 |
| chr4_2 | exon | 1187118 | 1187236 | 1187118 | ID=Msa0582740-mRNA-1:exon:299;Parent=Msa0582740-mRNA-1 |
| chr4_2 | CDS | 1186552 | 1186726 | 1186552 | ID=Msa0582740-mRNA-1:cds;Parent=Msa0582740-mRNA-1 |
| chr4_2 | CDS | 1187118 | 1187236 | 1187118 | ID=Msa0582740-mRNA-1:cds;Parent=Msa0582740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
