Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612060 | XP_024637097.1 | 85.047 | 214 | 9 | 2 | 1 | 191 | 1 | 214 | 1.04e-122 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002580 | Msa0612060 | 0.834991 | 2.175362e-56 | -8.615850e-47 |
| Msa0025160 | Msa0612060 | 0.810506 | 1.114507e-50 | -8.615850e-47 |
| Msa0034210 | Msa0612060 | 0.817390 | 3.380369e-52 | -8.615850e-47 |
| Msa0042640 | Msa0612060 | 0.806161 | 9.407292e-50 | -8.615850e-47 |
| Msa0077340 | Msa0612060 | 0.810343 | 1.208220e-50 | -8.615850e-47 |
| Msa0612060 | Msa0652170 | 0.827507 | 1.506284e-54 | -8.615850e-47 |
| Msa0612060 | Msa0666700 | 0.800730 | 1.256507e-48 | -8.615850e-47 |
| Msa0612060 | Msa0675330 | 0.814152 | 1.781459e-51 | -8.615850e-47 |
| Msa0612060 | Msa0693890 | 0.829648 | 4.577550e-55 | -8.615850e-47 |
| Msa0612060 | Msa0725750 | 0.804055 | 2.594974e-49 | -8.615850e-47 |
| Msa0612060 | Msa0738700 | 0.812571 | 3.964672e-51 | -8.615850e-47 |
| Msa0612060 | Msa0740710 | 0.801755 | 7.753133e-49 | -8.615850e-47 |
| Msa0612060 | Msa0773630 | 0.803481 | 3.415920e-49 | -8.615850e-47 |
| Msa0612060 | Msa0780910 | 0.800082 | 1.703005e-48 | -8.615850e-47 |
| Msa0612060 | Msa0859290 | 0.821121 | 4.776855e-53 | -8.615850e-47 |
| Msa0612060 | Msa1009950 | 0.819046 | 1.426478e-52 | -8.615850e-47 |
| Msa0612060 | Msa1042160 | 0.817816 | 2.710252e-52 | -8.615850e-47 |
| Msa0612060 | Msa1042190 | 0.823997 | 1.024456e-53 | -8.615850e-47 |
| Msa0612060 | Msa1051420 | 0.812508 | 4.092766e-51 | -8.615850e-47 |
| Msa0612060 | Msa1072940 | 0.813464 | 2.525850e-51 | -8.615850e-47 |
| Msa0612060 | Msa1078970 | 0.800700 | 1.274702e-48 | -8.615850e-47 |
| Msa0612060 | Msa1160920 | 0.820589 | 6.331815e-53 | -8.615850e-47 |
| Msa0612060 | Msa1167470 | 0.810542 | 1.094735e-50 | -8.615850e-47 |
| Msa0612060 | Msa1265650 | 0.834977 | 2.193272e-56 | -8.615850e-47 |
| Msa0612060 | Msa1303560 | 0.823278 | 1.509595e-53 | -8.615850e-47 |
| Msa0612060 | Msa1303650 | 0.826707 | 2.340599e-54 | -8.615850e-47 |
| Msa0612060 | Msa1315160 | 0.826428 | 2.728077e-54 | -8.615850e-47 |
| Msa0612060 | Msa1372040 | 0.818444 | 1.953644e-52 | -8.615850e-47 |
| Msa0612060 | Msa1405460 | 0.832845 | 7.492829e-56 | -8.615850e-47 |
| Msa0612060 | Msa1415540 | 0.835045 | 2.108750e-56 | -8.615850e-47 |
| Msa0612060 | Msa1452140 | 0.813731 | 2.206731e-51 | -8.615850e-47 |
| Msa0128310 | Msa0612060 | 0.824813 | 6.586954e-54 | -8.615850e-47 |
| Msa0174440 | Msa0612060 | 0.807355 | 5.262584e-50 | -8.615850e-47 |
| Msa0188610 | Msa0612060 | 0.814187 | 1.750392e-51 | -8.615850e-47 |
| Msa0230800 | Msa0612060 | 0.813270 | 2.787125e-51 | -8.615850e-47 |
| Msa0230870 | Msa0612060 | 0.811188 | 7.933243e-51 | -8.615850e-47 |
| Msa0369790 | Msa0612060 | 0.820433 | 6.876097e-53 | -8.615850e-47 |
| Msa0436910 | Msa0612060 | 0.837970 | 3.796160e-57 | -8.615850e-47 |
| Msa0464000 | Msa0612060 | 0.820217 | 7.709119e-53 | -8.615850e-47 |
| Msa0472950 | Msa0612060 | 0.826370 | 2.815770e-54 | -8.615850e-47 |
| Msa0270340 | Msa0612060 | 0.805278 | 1.442216e-49 | -8.615850e-47 |
| Msa0298470 | Msa0612060 | 0.817911 | 2.579587e-52 | -8.615850e-47 |
| Msa0509550 | Msa0612060 | 0.808450 | 3.078918e-50 | -8.615850e-47 |
| Msa0528570 | Msa0612060 | 0.835174 | 1.956024e-56 | -8.615850e-47 |
| Msa0529030 | Msa0612060 | 0.835923 | 1.264861e-56 | -8.615850e-47 |
| Msa0541300 | Msa0612060 | 0.811536 | 6.664438e-51 | -8.615850e-47 |
| Msa0541310 | Msa0612060 | 0.814784 | 1.291258e-51 | -8.615850e-47 |
| Msa0556640 | Msa0612060 | 0.838462 | 2.834999e-57 | -8.615850e-47 |
| Msa0557460 | Msa0612060 | 0.817734 | 2.828407e-52 | -8.615850e-47 |
| Msa0585020 | Msa0612060 | 0.816387 | 5.678493e-52 | -8.615850e-47 |
| Msa0597270 | Msa0612060 | 0.822671 | 2.091071e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612060 | MtrunA17_Chr4g0045611 | 84.259 | 216 | 9 | 3 | 1 | 191 | 1 | 216 | 1.07e-124 | 350 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612060 | AT3G59680.2 | 48.990 | 198 | 71 | 8 | 12 | 182 | 24 | 218 | 4.90e-49 | 159 |
| Msa0612060 | AT3G59680.1 | 47.619 | 189 | 70 | 7 | 22 | 183 | 5 | 191 | 3.86e-45 | 148 |
Find 34 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTAATAATTCAACTTTA+TGG | 0.128033 | 4_2:+60431237 | Msa0612060:CDS |
| GTGGAAATATTTGTTGATTT+TGG | 0.165410 | 4_2:-60431215 | None:intergenic |
| ATTTCTCAAAATCTCATTAT+AGG | 0.182353 | 4_2:-60431390 | None:intergenic |
| GTAGGAACTTGAGGGGATTT+TGG | 0.233877 | 4_2:-60431269 | None:intergenic |
| CTTGTATTTGAATCATTCTT+TGG | 0.242496 | 4_2:-60430568 | None:intergenic |
| GAAATCAAATGGAAGTTATT+AGG | 0.286022 | 4_2:+60431612 | Msa0612060:CDS |
| GGATAACTATTACTTCTTCT+AGG | 0.341829 | 4_2:-60431422 | None:intergenic |
| CAATGGATGTAACTAGCTTA+TGG | 0.393769 | 4_2:+60431183 | Msa0612060:CDS |
| ATCTCATTATAGGAATAAAT+AGG | 0.401100 | 4_2:-60431380 | None:intergenic |
| GCCTAGTCCTCTTAGTAGAA+TGG | 0.460019 | 4_2:+60431667 | Msa0612060:CDS |
| AAATGGAAGTTATTAGGAAA+AGG | 0.469401 | 4_2:+60431618 | Msa0612060:CDS |
| CCAAAGCAAAAGATAGATGT+TGG | 0.494796 | 4_2:+60430389 | Msa0612060:five_prime_UTR |
| TCCATTGCTCTTTGATACCA+TGG | 0.496795 | 4_2:-60431167 | None:intergenic |
| AATTAGAAGAAGAAATCAAA+TGG | 0.496957 | 4_2:+60431601 | Msa0612060:CDS |
| GCAAGAACCATTCTACTAAG+AGG | 0.510476 | 4_2:-60431674 | None:intergenic |
| CAAAGCAAAAGATAGATGTT+GGG | 0.516457 | 4_2:+60430390 | Msa0612060:five_prime_UTR |
| TAAAGTTGAATTATTAGATG+TGG | 0.519784 | 4_2:-60431234 | None:intergenic |
| TGAAAATATGAAAGAGGTGG+AGG | 0.520559 | 4_2:-60430523 | None:intergenic |
| ACAATAAAGAATGACAGAAA+AGG | 0.525503 | 4_2:+60430415 | Msa0612060:five_prime_UTR |
| TAATAATTCAACTTTATGGA+AGG | 0.536189 | 4_2:+60431241 | Msa0612060:CDS |
| CAAAGAATGATTCAAATACA+AGG | 0.543307 | 4_2:+60430569 | Msa0612060:CDS |
| TCATGCGATGTTGTTTGCAA+TGG | 0.549562 | 4_2:-60431458 | None:intergenic |
| GAAAACTGAAAATATGAAAG+AGG | 0.553021 | 4_2:-60430529 | None:intergenic |
| TTTCAAGATGCAGGAAGCCA+TGG | 0.559134 | 4_2:+60431150 | Msa0612060:intron |
| GCCATGGTATCAAAGAGCAA+TGG | 0.567750 | 4_2:+60431166 | Msa0612060:CDS |
| AAATTAGAACTCATAGTGCT+AGG | 0.568662 | 4_2:+60431480 | Msa0612060:CDS |
| AGTGCTAGGCTTAGCACAGA+GGG | 0.581749 | 4_2:+60431494 | Msa0612060:CDS |
| AACTGAAAATATGAAAGAGG+TGG | 0.590887 | 4_2:-60430526 | None:intergenic |
| ACTTTGTGTAGGAACTTGAG+GGG | 0.629081 | 4_2:-60431276 | None:intergenic |
| TAACTATTACTTCTTCTAGG+TGG | 0.635383 | 4_2:-60431419 | None:intergenic |
| ACCATTCTACTAAGAGGACT+AGG | 0.640553 | 4_2:-60431668 | None:intergenic |
| TTAGGAAAAGGAGTGTGATG+AGG | 0.650109 | 4_2:+60431630 | Msa0612060:CDS |
| TTAGCACAGAGGGATCAAGA+AGG | 0.686930 | 4_2:+60431504 | Msa0612060:CDS |
| TAGTGCTAGGCTTAGCACAG+AGG | 0.719730 | 4_2:+60431493 | Msa0612060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATTATAAAATCTGAAAAAA+TGG | + | chr4_2:60431790-60431809 | Msa0612060:intron | 15.0% |
| !!! | TTATATAATCTGAAATTCAT+AGG | + | chr4_2:60431853-60431872 | Msa0612060:intron | 15.0% |
| !!! | TATATAATCTGAAATTCATA+GGG | + | chr4_2:60431854-60431873 | Msa0612060:intron | 15.0% |
| !!! | TTTTTTTTTTTTACAATCTG+TGG | + | chr4_2:60431981-60432000 | Msa0612060:intron | 15.0% |
| !!! | TTTTTTTTTTTACAATCTGT+GGG | + | chr4_2:60431982-60432001 | Msa0612060:intron | 15.0% |
| !! | GATTATAAAATCTGAAAAAA+TGG | + | chr4_2:60431790-60431809 | Msa0612060:intron | 15.0% |
| !!! | TTATATAATCTGAAATTCAT+AGG | + | chr4_2:60431853-60431872 | Msa0612060:intron | 15.0% |
| !!! | TATATAATCTGAAATTCATA+GGG | + | chr4_2:60431854-60431873 | Msa0612060:intron | 15.0% |
| !!! | TTTTTTTTTTTTACAATCTG+TGG | + | chr4_2:60431981-60432000 | Msa0612060:intron | 15.0% |
| !!! | TTTTTTTTTTTACAATCTGT+GGG | + | chr4_2:60431982-60432001 | Msa0612060:intron | 15.0% |
| !! | AAAAAATTCAAAAGGAATCA+TGG | + | chr4_2:60430363-60430382 | Msa0612060:five_prime_UTR | 20.0% |
| !!! | GAAAGTGTTAAATTTAGTTT+AGG | - | chr4_2:60430774-60430793 | None:intergenic | 20.0% |
| !!! | TTTATAGGTTTTTTCAACAT+TGG | + | chr4_2:60430947-60430966 | Msa0612060:intron | 20.0% |
| !! | TAAAGTTGAATTATTAGATG+TGG | - | chr4_2:60431237-60431256 | None:intergenic | 20.0% |
| !! | CATCTAATAATTCAACTTTA+TGG | + | chr4_2:60431237-60431256 | Msa0612060:CDS | 20.0% |
| !! | TAATAATTCAACTTTATGGA+AGG | + | chr4_2:60431241-60431260 | Msa0612060:CDS | 20.0% |
| !! | ATCTCATTATAGGAATAAAT+AGG | - | chr4_2:60431383-60431402 | None:intergenic | 20.0% |
| !! | ATTTCTCAAAATCTCATTAT+AGG | - | chr4_2:60431393-60431412 | None:intergenic | 20.0% |
| !!! | AATGAAAAGATTTGTTATTG+AGG | + | chr4_2:60431562-60431581 | Msa0612060:intron | 20.0% |
| !! | AATTAGAAGAAGAAATCAAA+TGG | + | chr4_2:60431601-60431620 | Msa0612060:CDS | 20.0% |
| !!! | TCAGATTTTATAATCTGAAT+AGG | - | chr4_2:60431785-60431804 | None:intergenic | 20.0% |
| !! | TGTAATGTCTAAATCTAAAT+TGG | + | chr4_2:60431912-60431931 | Msa0612060:intron | 20.0% |
| !!! | TTCGAACAATTTATGTTTTA+TGG | + | chr4_2:60432034-60432053 | Msa0612060:intron | 20.0% |
| !! | GTTTCTATAAAAACAAAAGT+AGG | - | chr4_2:60432128-60432147 | None:intergenic | 20.0% |
| !! | AAAAAATTCAAAAGGAATCA+TGG | + | chr4_2:60430363-60430382 | Msa0612060:five_prime_UTR | 20.0% |
| !!! | GAAAGTGTTAAATTTAGTTT+AGG | - | chr4_2:60430774-60430793 | None:intergenic | 20.0% |
| !!! | TTTATAGGTTTTTTCAACAT+TGG | + | chr4_2:60430947-60430966 | Msa0612060:intron | 20.0% |
| !! | TAAAGTTGAATTATTAGATG+TGG | - | chr4_2:60431237-60431256 | None:intergenic | 20.0% |
| !! | CATCTAATAATTCAACTTTA+TGG | + | chr4_2:60431237-60431256 | Msa0612060:CDS | 20.0% |
| !! | TAATAATTCAACTTTATGGA+AGG | + | chr4_2:60431241-60431260 | Msa0612060:CDS | 20.0% |
| !! | ATCTCATTATAGGAATAAAT+AGG | - | chr4_2:60431383-60431402 | None:intergenic | 20.0% |
| !! | ATTTCTCAAAATCTCATTAT+AGG | - | chr4_2:60431393-60431412 | None:intergenic | 20.0% |
| !!! | AATGAAAAGATTTGTTATTG+AGG | + | chr4_2:60431562-60431581 | Msa0612060:intron | 20.0% |
| !! | AATTAGAAGAAGAAATCAAA+TGG | + | chr4_2:60431601-60431620 | Msa0612060:CDS | 20.0% |
| !!! | TCAGATTTTATAATCTGAAT+AGG | - | chr4_2:60431785-60431804 | None:intergenic | 20.0% |
| !! | TGTAATGTCTAAATCTAAAT+TGG | + | chr4_2:60431912-60431931 | Msa0612060:intron | 20.0% |
| !!! | TTCGAACAATTTATGTTTTA+TGG | + | chr4_2:60432034-60432053 | Msa0612060:intron | 20.0% |
| !! | GTTTCTATAAAAACAAAAGT+AGG | - | chr4_2:60432128-60432147 | None:intergenic | 20.0% |
| ! | ACAATAAAGAATGACAGAAA+AGG | + | chr4_2:60430415-60430434 | Msa0612060:five_prime_UTR | 25.0% |
| ! | GAAAACTGAAAATATGAAAG+AGG | - | chr4_2:60430532-60430551 | None:intergenic | 25.0% |
| ! | CTTGTATTTGAATCATTCTT+TGG | - | chr4_2:60430571-60430590 | None:intergenic | 25.0% |
| ! | CAAAGAATGATTCAAATACA+AGG | + | chr4_2:60430569-60430588 | Msa0612060:CDS | 25.0% |
| ! | TAAGCTAAAATTCTCAAGAA+GGG | - | chr4_2:60430622-60430641 | None:intergenic | 25.0% |
| ! | TTAAGCTAAAATTCTCAAGA+AGG | - | chr4_2:60430623-60430642 | None:intergenic | 25.0% |
| !!! | AGAATTTTAGCTTAATGCAT+TGG | + | chr4_2:60430628-60430647 | Msa0612060:intron | 25.0% |
| ! | TAGTGTGATCATCTATAATA+AGG | + | chr4_2:60430689-60430708 | Msa0612060:intron | 25.0% |
| ! | AGTGTGATCATCTATAATAA+GGG | + | chr4_2:60430690-60430709 | Msa0612060:intron | 25.0% |
| ! | TATGAAGAAGTTAATGCTAT+TGG | - | chr4_2:60430828-60430847 | None:intergenic | 25.0% |
| !!! | TTCAACATTGGTTCTAAATT+TGG | + | chr4_2:60430959-60430978 | Msa0612060:intron | 25.0% |
| !! | TAAATTTGGAATTTCCATTC+TGG | + | chr4_2:60430973-60430992 | Msa0612060:intron | 25.0% |
| ! | AATTTATAACTATGCCAGAA+TGG | - | chr4_2:60430990-60431009 | None:intergenic | 25.0% |
| !! | TTATTTTCCTCTTGCATAAT+TGG | + | chr4_2:60431065-60431084 | Msa0612060:intron | 25.0% |
| ! | TTCAATTTATTTCAAGATGC+AGG | + | chr4_2:60431141-60431160 | Msa0612060:intron | 25.0% |
| !!! | GTGGAAATATTTGTTGATTT+TGG | - | chr4_2:60431218-60431237 | None:intergenic | 25.0% |
| !! | TTGTTATTAGAACTTTGTGT+AGG | - | chr4_2:60431290-60431309 | None:intergenic | 25.0% |
| ! | AAGAAAATGTACATCTCTAA+AGG | + | chr4_2:60431322-60431341 | Msa0612060:intron | 25.0% |
| !!! | TAATGAGATTTTGAGAAATG+AGG | + | chr4_2:60431394-60431413 | Msa0612060:CDS | 25.0% |
| ! | GAAATCAAATGGAAGTTATT+AGG | + | chr4_2:60431612-60431631 | Msa0612060:CDS | 25.0% |
| ! | AAATGGAAGTTATTAGGAAA+AGG | + | chr4_2:60431618-60431637 | Msa0612060:CDS | 25.0% |
| ! | AGAAATTCTCTTACAAGAAT+GGG | - | chr4_2:60431735-60431754 | None:intergenic | 25.0% |
| ! | AAGAAATTCTCTTACAAGAA+TGG | - | chr4_2:60431736-60431755 | None:intergenic | 25.0% |
| ! | AATCTGAAAAAATGGTACTT+TGG | + | chr4_2:60431798-60431817 | Msa0612060:intron | 25.0% |
| ! | AAACTTAGCAAACAAGATTA+TGG | - | chr4_2:60431962-60431981 | None:intergenic | 25.0% |
| ! | ACAATAAAGAATGACAGAAA+AGG | + | chr4_2:60430415-60430434 | Msa0612060:five_prime_UTR | 25.0% |
| ! | GAAAACTGAAAATATGAAAG+AGG | - | chr4_2:60430532-60430551 | None:intergenic | 25.0% |
| ! | CTTGTATTTGAATCATTCTT+TGG | - | chr4_2:60430571-60430590 | None:intergenic | 25.0% |
| ! | CAAAGAATGATTCAAATACA+AGG | + | chr4_2:60430569-60430588 | Msa0612060:CDS | 25.0% |
| ! | TAAGCTAAAATTCTCAAGAA+GGG | - | chr4_2:60430622-60430641 | None:intergenic | 25.0% |
| ! | TTAAGCTAAAATTCTCAAGA+AGG | - | chr4_2:60430623-60430642 | None:intergenic | 25.0% |
| !!! | AGAATTTTAGCTTAATGCAT+TGG | + | chr4_2:60430628-60430647 | Msa0612060:intron | 25.0% |
| ! | TAGTGTGATCATCTATAATA+AGG | + | chr4_2:60430689-60430708 | Msa0612060:intron | 25.0% |
| ! | AGTGTGATCATCTATAATAA+GGG | + | chr4_2:60430690-60430709 | Msa0612060:intron | 25.0% |
| ! | TATGAAGAAGTTAATGCTAT+TGG | - | chr4_2:60430828-60430847 | None:intergenic | 25.0% |
| !!! | TTCAACATTGGTTCTAAATT+TGG | + | chr4_2:60430959-60430978 | Msa0612060:intron | 25.0% |
| !! | TAAATTTGGAATTTCCATTC+TGG | + | chr4_2:60430973-60430992 | Msa0612060:intron | 25.0% |
| ! | AATTTATAACTATGCCAGAA+TGG | - | chr4_2:60430990-60431009 | None:intergenic | 25.0% |
| !! | TTATTTTCCTCTTGCATAAT+TGG | + | chr4_2:60431065-60431084 | Msa0612060:intron | 25.0% |
| ! | TTCAATTTATTTCAAGATGC+AGG | + | chr4_2:60431141-60431160 | Msa0612060:intron | 25.0% |
| !!! | GTGGAAATATTTGTTGATTT+TGG | - | chr4_2:60431218-60431237 | None:intergenic | 25.0% |
| !! | TTGTTATTAGAACTTTGTGT+AGG | - | chr4_2:60431290-60431309 | None:intergenic | 25.0% |
| ! | AAGAAAATGTACATCTCTAA+AGG | + | chr4_2:60431322-60431341 | Msa0612060:intron | 25.0% |
| !!! | TAATGAGATTTTGAGAAATG+AGG | + | chr4_2:60431394-60431413 | Msa0612060:CDS | 25.0% |
| ! | GAAATCAAATGGAAGTTATT+AGG | + | chr4_2:60431612-60431631 | Msa0612060:CDS | 25.0% |
| ! | AAATGGAAGTTATTAGGAAA+AGG | + | chr4_2:60431618-60431637 | Msa0612060:CDS | 25.0% |
| ! | AGAAATTCTCTTACAAGAAT+GGG | - | chr4_2:60431735-60431754 | None:intergenic | 25.0% |
| ! | AAGAAATTCTCTTACAAGAA+TGG | - | chr4_2:60431736-60431755 | None:intergenic | 25.0% |
| ! | AATCTGAAAAAATGGTACTT+TGG | + | chr4_2:60431798-60431817 | Msa0612060:intron | 25.0% |
| ! | AAACTTAGCAAACAAGATTA+TGG | - | chr4_2:60431962-60431981 | None:intergenic | 25.0% |
| CAAAGCAAAAGATAGATGTT+GGG | + | chr4_2:60430390-60430409 | Msa0612060:five_prime_UTR | 30.0% | |
| AACTGAAAATATGAAAGAGG+TGG | - | chr4_2:60430529-60430548 | None:intergenic | 30.0% | |
| ! | AAATTTAGTTTAGGCCTTAG+AGG | - | chr4_2:60430765-60430784 | None:intergenic | 30.0% |
| TTCCCATGTTAGTAAAGAAT+TGG | + | chr4_2:60430791-60430810 | Msa0612060:intron | 30.0% | |
| TCCCATGTTAGTAAAGAATT+GGG | + | chr4_2:60430792-60430811 | Msa0612060:intron | 30.0% | |
| ACCCAATTCTTTACTAACAT+GGG | - | chr4_2:60430796-60430815 | None:intergenic | 30.0% | |
| AACCCAATTCTTTACTAACA+TGG | - | chr4_2:60430797-60430816 | None:intergenic | 30.0% | |
| ! | TTTTGACCAAATCAATTCTC+TGG | + | chr4_2:60430915-60430934 | Msa0612060:intron | 30.0% |
| GTTGAAAAAACCTATAAAGC+AGG | - | chr4_2:60430945-60430964 | None:intergenic | 30.0% | |
| ! | ATGATTTGTGTCTTGTAACA+AGG | - | chr4_2:60431021-60431040 | None:intergenic | 30.0% |
| TTACAAGACACAAATCATAG+AGG | + | chr4_2:60431023-60431042 | Msa0612060:intron | 30.0% | |
| ! | TTTAGAACCAATTATGCAAG+AGG | - | chr4_2:60431075-60431094 | None:intergenic | 30.0% |
| ! | AGATGTACATTTTCTTAGCT+TGG | - | chr4_2:60431318-60431337 | None:intergenic | 30.0% |
| TAACTATTACTTCTTCTAGG+TGG | - | chr4_2:60431422-60431441 | None:intergenic | 30.0% | |
| GGATAACTATTACTTCTTCT+AGG | - | chr4_2:60431425-60431444 | None:intergenic | 30.0% | |
| AAATTAGAACTCATAGTGCT+AGG | + | chr4_2:60431480-60431499 | Msa0612060:CDS | 30.0% | |
| !! | AAGATTTGTTATTGAGGAAG+AGG | + | chr4_2:60431568-60431587 | Msa0612060:intron | 30.0% |
| !! | AATGGTACTTTGGAAGATTT+TGG | + | chr4_2:60431808-60431827 | Msa0612060:intron | 30.0% |
| ATAAATTGTGGGAAGAGAAA+TGG | + | chr4_2:60431883-60431902 | Msa0612060:intron | 30.0% | |
| CATAACAATACCATAAAGCT+GGG | - | chr4_2:60432060-60432079 | None:intergenic | 30.0% | |
| ACATAACAATACCATAAAGC+TGG | - | chr4_2:60432061-60432080 | None:intergenic | 30.0% | |
| AAACTAACATTGTGAAACTG+AGG | - | chr4_2:60432087-60432106 | None:intergenic | 30.0% | |
| CAAAGCAAAAGATAGATGTT+GGG | + | chr4_2:60430390-60430409 | Msa0612060:five_prime_UTR | 30.0% | |
| AACTGAAAATATGAAAGAGG+TGG | - | chr4_2:60430529-60430548 | None:intergenic | 30.0% | |
| ! | AAATTTAGTTTAGGCCTTAG+AGG | - | chr4_2:60430765-60430784 | None:intergenic | 30.0% |
| TTCCCATGTTAGTAAAGAAT+TGG | + | chr4_2:60430791-60430810 | Msa0612060:intron | 30.0% | |
| TCCCATGTTAGTAAAGAATT+GGG | + | chr4_2:60430792-60430811 | Msa0612060:intron | 30.0% | |
| ACCCAATTCTTTACTAACAT+GGG | - | chr4_2:60430796-60430815 | None:intergenic | 30.0% | |
| AACCCAATTCTTTACTAACA+TGG | - | chr4_2:60430797-60430816 | None:intergenic | 30.0% | |
| ! | TTTTGACCAAATCAATTCTC+TGG | + | chr4_2:60430915-60430934 | Msa0612060:intron | 30.0% |
| GTTGAAAAAACCTATAAAGC+AGG | - | chr4_2:60430945-60430964 | None:intergenic | 30.0% | |
| ! | ATGATTTGTGTCTTGTAACA+AGG | - | chr4_2:60431021-60431040 | None:intergenic | 30.0% |
| TTACAAGACACAAATCATAG+AGG | + | chr4_2:60431023-60431042 | Msa0612060:intron | 30.0% | |
| ! | TTTAGAACCAATTATGCAAG+AGG | - | chr4_2:60431075-60431094 | None:intergenic | 30.0% |
| ! | AGATGTACATTTTCTTAGCT+TGG | - | chr4_2:60431318-60431337 | None:intergenic | 30.0% |
| TAACTATTACTTCTTCTAGG+TGG | - | chr4_2:60431422-60431441 | None:intergenic | 30.0% | |
| GGATAACTATTACTTCTTCT+AGG | - | chr4_2:60431425-60431444 | None:intergenic | 30.0% | |
| AAATTAGAACTCATAGTGCT+AGG | + | chr4_2:60431480-60431499 | Msa0612060:CDS | 30.0% | |
| !! | AAGATTTGTTATTGAGGAAG+AGG | + | chr4_2:60431568-60431587 | Msa0612060:intron | 30.0% |
| !! | AATGGTACTTTGGAAGATTT+TGG | + | chr4_2:60431808-60431827 | Msa0612060:intron | 30.0% |
| ATAAATTGTGGGAAGAGAAA+TGG | + | chr4_2:60431883-60431902 | Msa0612060:intron | 30.0% | |
| CATAACAATACCATAAAGCT+GGG | - | chr4_2:60432060-60432079 | None:intergenic | 30.0% | |
| ACATAACAATACCATAAAGC+TGG | - | chr4_2:60432061-60432080 | None:intergenic | 30.0% | |
| AAACTAACATTGTGAAACTG+AGG | - | chr4_2:60432087-60432106 | None:intergenic | 30.0% | |
| ! | CCAACATCTATCTTTTGCTT+TGG | - | chr4_2:60430392-60430411 | None:intergenic | 35.0% |
| CCAAAGCAAAAGATAGATGT+TGG | + | chr4_2:60430389-60430408 | Msa0612060:five_prime_UTR | 35.0% | |
| ! | TTTTGCTTCAGTTTGTGACT+TGG | - | chr4_2:60430455-60430474 | None:intergenic | 35.0% |
| TGAAAATATGAAAGAGGTGG+AGG | - | chr4_2:60430526-60430545 | None:intergenic | 35.0% | |
| ATGCTCACATTATTCCTCTA+AGG | + | chr4_2:60430748-60430767 | Msa0612060:intron | 35.0% | |
| TGCATTAGTACTTCTTGAGA+TGG | - | chr4_2:60431113-60431132 | None:intergenic | 35.0% | |
| ! | CAATGGATGTAACTAGCTTA+TGG | + | chr4_2:60431183-60431202 | Msa0612060:CDS | 35.0% |
| AACTTTGTGTAGGAACTTGA+GGG | - | chr4_2:60431280-60431299 | None:intergenic | 35.0% | |
| ! | AGGTAGCAACATCTTTTACA+AGG | + | chr4_2:60431342-60431361 | Msa0612060:intron | 35.0% |
| ! | GGTAGCAACATCTTTTACAA+GGG | + | chr4_2:60431343-60431362 | Msa0612060:intron | 35.0% |
| !!! | TGCAATGGTTTTGATGATCT+AGG | - | chr4_2:60431446-60431465 | None:intergenic | 35.0% |
| ! | AGGGATCAAGAAGGATTTTT+AGG | + | chr4_2:60431513-60431532 | Msa0612060:CDS | 35.0% |
| ! | GGGATCAAGAAGGATTTTTA+GGG | + | chr4_2:60431514-60431533 | Msa0612060:CDS | 35.0% |
| !! | GGATCAAGAAGGATTTTTAG+GGG | + | chr4_2:60431515-60431534 | Msa0612060:CDS | 35.0% |
| TGATGAGGAAAAAGAGACTT+GGG | + | chr4_2:60431645-60431664 | Msa0612060:CDS | 35.0% | |
| ATGGTTCTTGCAGATGATAT+TGG | + | chr4_2:60431686-60431705 | Msa0612060:intron | 35.0% | |
| ! | CCAACATCTATCTTTTGCTT+TGG | - | chr4_2:60430392-60430411 | None:intergenic | 35.0% |
| CCAAAGCAAAAGATAGATGT+TGG | + | chr4_2:60430389-60430408 | Msa0612060:five_prime_UTR | 35.0% | |
| ! | TTTTGCTTCAGTTTGTGACT+TGG | - | chr4_2:60430455-60430474 | None:intergenic | 35.0% |
| TGAAAATATGAAAGAGGTGG+AGG | - | chr4_2:60430526-60430545 | None:intergenic | 35.0% | |
| ATGCTCACATTATTCCTCTA+AGG | + | chr4_2:60430748-60430767 | Msa0612060:intron | 35.0% | |
| TGCATTAGTACTTCTTGAGA+TGG | - | chr4_2:60431113-60431132 | None:intergenic | 35.0% | |
| ! | CAATGGATGTAACTAGCTTA+TGG | + | chr4_2:60431183-60431202 | Msa0612060:CDS | 35.0% |
| AACTTTGTGTAGGAACTTGA+GGG | - | chr4_2:60431280-60431299 | None:intergenic | 35.0% | |
| ! | AGGTAGCAACATCTTTTACA+AGG | + | chr4_2:60431342-60431361 | Msa0612060:intron | 35.0% |
| ! | GGTAGCAACATCTTTTACAA+GGG | + | chr4_2:60431343-60431362 | Msa0612060:intron | 35.0% |
| !!! | TGCAATGGTTTTGATGATCT+AGG | - | chr4_2:60431446-60431465 | None:intergenic | 35.0% |
| ! | AGGGATCAAGAAGGATTTTT+AGG | + | chr4_2:60431513-60431532 | Msa0612060:CDS | 35.0% |
| ! | GGGATCAAGAAGGATTTTTA+GGG | + | chr4_2:60431514-60431533 | Msa0612060:CDS | 35.0% |
| !! | GGATCAAGAAGGATTTTTAG+GGG | + | chr4_2:60431515-60431534 | Msa0612060:CDS | 35.0% |
| TGATGAGGAAAAAGAGACTT+GGG | + | chr4_2:60431645-60431664 | Msa0612060:CDS | 35.0% | |
| ATGGTTCTTGCAGATGATAT+TGG | + | chr4_2:60431686-60431705 | Msa0612060:intron | 35.0% | |
| GCTAAAATTCTCAAGAAGGG+AGG | - | chr4_2:60430619-60430638 | None:intergenic | 40.0% | |
| GGTAAGCCAGAGAATTGATT+TGG | - | chr4_2:60430924-60430943 | None:intergenic | 40.0% | |
| TCCATTGCTCTTTGATACCA+TGG | - | chr4_2:60431170-60431189 | None:intergenic | 40.0% | |
| ACTTTGTGTAGGAACTTGAG+GGG | - | chr4_2:60431279-60431298 | None:intergenic | 40.0% | |
| GAACTTTGTGTAGGAACTTG+AGG | - | chr4_2:60431281-60431300 | None:intergenic | 40.0% | |
| ! | TCATGCGATGTTGTTTGCAA+TGG | - | chr4_2:60431461-60431480 | None:intergenic | 40.0% |
| ! | TTAGGAAAAGGAGTGTGATG+AGG | + | chr4_2:60431630-60431649 | Msa0612060:CDS | 40.0% |
| GTGATGAGGAAAAAGAGACT+TGG | + | chr4_2:60431644-60431663 | Msa0612060:CDS | 40.0% | |
| ACCATTCTACTAAGAGGACT+AGG | - | chr4_2:60431671-60431690 | None:intergenic | 40.0% | |
| GCAAGAACCATTCTACTAAG+AGG | - | chr4_2:60431677-60431696 | None:intergenic | 40.0% | |
| !! | GGTACTTTGGAAGATTTTGG+AGG | + | chr4_2:60431811-60431830 | Msa0612060:intron | 40.0% |
| GAAAACCCAGTTGTAGAAAC+TGG | - | chr4_2:60432008-60432027 | None:intergenic | 40.0% | |
| ! | TGTTTTATGGCCCAGCTTTA+TGG | + | chr4_2:60432047-60432066 | Msa0612060:intron | 40.0% |
| GCTAAAATTCTCAAGAAGGG+AGG | - | chr4_2:60430619-60430638 | None:intergenic | 40.0% | |
| GGTAAGCCAGAGAATTGATT+TGG | - | chr4_2:60430924-60430943 | None:intergenic | 40.0% | |
| TCCATTGCTCTTTGATACCA+TGG | - | chr4_2:60431170-60431189 | None:intergenic | 40.0% | |
| ACTTTGTGTAGGAACTTGAG+GGG | - | chr4_2:60431279-60431298 | None:intergenic | 40.0% | |
| GAACTTTGTGTAGGAACTTG+AGG | - | chr4_2:60431281-60431300 | None:intergenic | 40.0% | |
| ! | TCATGCGATGTTGTTTGCAA+TGG | - | chr4_2:60431461-60431480 | None:intergenic | 40.0% |
| ! | TTAGGAAAAGGAGTGTGATG+AGG | + | chr4_2:60431630-60431649 | Msa0612060:CDS | 40.0% |
| GTGATGAGGAAAAAGAGACT+TGG | + | chr4_2:60431644-60431663 | Msa0612060:CDS | 40.0% | |
| ACCATTCTACTAAGAGGACT+AGG | - | chr4_2:60431671-60431690 | None:intergenic | 40.0% | |
| GCAAGAACCATTCTACTAAG+AGG | - | chr4_2:60431677-60431696 | None:intergenic | 40.0% | |
| !! | GGTACTTTGGAAGATTTTGG+AGG | + | chr4_2:60431811-60431830 | Msa0612060:intron | 40.0% |
| GAAAACCCAGTTGTAGAAAC+TGG | - | chr4_2:60432008-60432027 | None:intergenic | 40.0% | |
| ! | TGTTTTATGGCCCAGCTTTA+TGG | + | chr4_2:60432047-60432066 | Msa0612060:intron | 40.0% |
| ! | CTCTGGCTTACCTGCTTTAT+AGG | + | chr4_2:60430932-60430951 | Msa0612060:intron | 45.0% |
| TTTCAAGATGCAGGAAGCCA+TGG | + | chr4_2:60431150-60431169 | Msa0612060:intron | 45.0% | |
| GCCATGGTATCAAAGAGCAA+TGG | + | chr4_2:60431166-60431185 | Msa0612060:CDS | 45.0% | |
| ! | GTAGGAACTTGAGGGGATTT+TGG | - | chr4_2:60431272-60431291 | None:intergenic | 45.0% |
| TTAGCACAGAGGGATCAAGA+AGG | + | chr4_2:60431504-60431523 | Msa0612060:CDS | 45.0% | |
| GCCTAGTCCTCTTAGTAGAA+TGG | + | chr4_2:60431667-60431686 | Msa0612060:CDS | 45.0% | |
| ATAGGGCACGCGATAAATTG+TGG | + | chr4_2:60431871-60431890 | Msa0612060:intron | 45.0% | |
| TAGGGCACGCGATAAATTGT+GGG | + | chr4_2:60431872-60431891 | Msa0612060:intron | 45.0% | |
| ! | CTCTGGCTTACCTGCTTTAT+AGG | + | chr4_2:60430932-60430951 | Msa0612060:intron | 45.0% |
| TTTCAAGATGCAGGAAGCCA+TGG | + | chr4_2:60431150-60431169 | Msa0612060:intron | 45.0% | |
| GCCATGGTATCAAAGAGCAA+TGG | + | chr4_2:60431166-60431185 | Msa0612060:CDS | 45.0% | |
| ! | GTAGGAACTTGAGGGGATTT+TGG | - | chr4_2:60431272-60431291 | None:intergenic | 45.0% |
| TTAGCACAGAGGGATCAAGA+AGG | + | chr4_2:60431504-60431523 | Msa0612060:CDS | 45.0% | |
| GCCTAGTCCTCTTAGTAGAA+TGG | + | chr4_2:60431667-60431686 | Msa0612060:CDS | 45.0% | |
| ATAGGGCACGCGATAAATTG+TGG | + | chr4_2:60431871-60431890 | Msa0612060:intron | 45.0% | |
| TAGGGCACGCGATAAATTGT+GGG | + | chr4_2:60431872-60431891 | Msa0612060:intron | 45.0% | |
| !! | AAAAAAAAAAAAAATTCAAA+AGG | + | chr4_2:60430355-60430374 | Msa0612060:five_prime_UTR | 5.0% |
| !! | AAAAAAAAAAAAAATTCAAA+AGG | + | chr4_2:60430355-60430374 | Msa0612060:five_prime_UTR | 5.0% |
| TAGTGCTAGGCTTAGCACAG+AGG | + | chr4_2:60431493-60431512 | Msa0612060:CDS | 50.0% | |
| AGTGCTAGGCTTAGCACAGA+GGG | + | chr4_2:60431494-60431513 | Msa0612060:CDS | 50.0% | |
| ATCTGAATAGGTGCGCGAGA+AGG | - | chr4_2:60431773-60431792 | None:intergenic | 50.0% | |
| TGTGGGCCAGTTTCTACAAC+TGG | + | chr4_2:60431999-60432018 | Msa0612060:intron | 50.0% | |
| GTGGGCCAGTTTCTACAACT+GGG | + | chr4_2:60432000-60432019 | Msa0612060:intron | 50.0% | |
| TAGTGCTAGGCTTAGCACAG+AGG | + | chr4_2:60431493-60431512 | Msa0612060:CDS | 50.0% | |
| AGTGCTAGGCTTAGCACAGA+GGG | + | chr4_2:60431494-60431513 | Msa0612060:CDS | 50.0% | |
| ATCTGAATAGGTGCGCGAGA+AGG | - | chr4_2:60431773-60431792 | None:intergenic | 50.0% | |
| TGTGGGCCAGTTTCTACAAC+TGG | + | chr4_2:60431999-60432018 | Msa0612060:intron | 50.0% | |
| GTGGGCCAGTTTCTACAACT+GGG | + | chr4_2:60432000-60432019 | Msa0612060:intron | 50.0% | |
| TAGGTGCGCGAGAAGGTTAG+AGG | - | chr4_2:60431766-60431785 | None:intergenic | 55.0% | |
| TAGGTGCGCGAGAAGGTTAG+AGG | - | chr4_2:60431766-60431785 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 60430304 | 60432173 | 60430304 | ID=Msa0612060;Name=Msa0612060 |
| chr4_2 | mRNA | 60430304 | 60432173 | 60430304 | ID=Msa0612060-mRNA-1;Parent=Msa0612060;Name=Msa0612060-mRNA-1;_AED=0.26;_eAED=0.26;_QI=198|0.2|0.16|0.66|0.4|0.5|6|0|194 |
| chr4_2 | exon | 60430304 | 60430590 | 60430304 | ID=Msa0612060-mRNA-1:exon:16285;Parent=Msa0612060-mRNA-1 |
| chr4_2 | exon | 60431163 | 60431283 | 60431163 | ID=Msa0612060-mRNA-1:exon:16286;Parent=Msa0612060-mRNA-1 |
| chr4_2 | exon | 60431344 | 60431574 | 60431344 | ID=Msa0612060-mRNA-1:exon:16287;Parent=Msa0612060-mRNA-1 |
| chr4_2 | exon | 60431584 | 60431688 | 60431584 | ID=Msa0612060-mRNA-1:exon:16288;Parent=Msa0612060-mRNA-1 |
| chr4_2 | exon | 60432090 | 60432098 | 60432090 | ID=Msa0612060-mRNA-1:exon:16289;Parent=Msa0612060-mRNA-1 |
| chr4_2 | exon | 60432144 | 60432173 | 60432144 | ID=Msa0612060-mRNA-1:exon:16290;Parent=Msa0612060-mRNA-1 |
| chr4_2 | five_prime_UTR | 60430304 | 60430501 | 60430304 | ID=Msa0612060-mRNA-1:five_prime_utr;Parent=Msa0612060-mRNA-1 |
| chr4_2 | CDS | 60430502 | 60430590 | 60430502 | ID=Msa0612060-mRNA-1:cds;Parent=Msa0612060-mRNA-1 |
| chr4_2 | CDS | 60431163 | 60431283 | 60431163 | ID=Msa0612060-mRNA-1:cds;Parent=Msa0612060-mRNA-1 |
| chr4_2 | CDS | 60431344 | 60431574 | 60431344 | ID=Msa0612060-mRNA-1:cds;Parent=Msa0612060-mRNA-1 |
| chr4_2 | CDS | 60431584 | 60431688 | 60431584 | ID=Msa0612060-mRNA-1:cds;Parent=Msa0612060-mRNA-1 |
| chr4_2 | CDS | 60432090 | 60432098 | 60432090 | ID=Msa0612060-mRNA-1:cds;Parent=Msa0612060-mRNA-1 |
| chr4_2 | CDS | 60432144 | 60432173 | 60432144 | ID=Msa0612060-mRNA-1:cds;Parent=Msa0612060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
