Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725750 | XP_003613819.1 | 97.610 | 544 | 12 | 1 | 1 | 544 | 1 | 543 | 0.0 | 1094 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725750 | sp|Q9S746|HTH_ARATH | 43.773 | 546 | 221 | 15 | 53 | 532 | 62 | 587 | 6.95e-132 | 399 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725750 | G7KGL1 | 97.610 | 544 | 12 | 1 | 1 | 544 | 1 | 543 | 0.0 | 1094 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003080 | Msa0725750 | 0.800144 | 1.654189e-48 | -8.615850e-47 |
| Msa0015150 | Msa0725750 | 0.805970 | 1.032247e-49 | -8.615850e-47 |
| Msa0019900 | Msa0725750 | 0.822777 | 1.975220e-53 | -8.615850e-47 |
| Msa0025160 | Msa0725750 | 0.865701 | 4.880375e-65 | -8.615850e-47 |
| Msa0029970 | Msa0725750 | 0.802575 | 5.256346e-49 | -8.615850e-47 |
| Msa0034210 | Msa0725750 | 0.852402 | 4.726663e-61 | -8.615850e-47 |
| Msa0042640 | Msa0725750 | 0.819684 | 1.020536e-52 | -8.615850e-47 |
| Msa0048510 | Msa0725750 | 0.801987 | 6.946818e-49 | -8.615850e-47 |
| Msa0050660 | Msa0725750 | 0.823832 | 1.120276e-53 | -8.615850e-47 |
| Msa0050700 | Msa0725750 | 0.826213 | 3.068586e-54 | -8.615850e-47 |
| Msa0050790 | Msa0725750 | 0.827115 | 1.869970e-54 | -8.615850e-47 |
| Msa0071850 | Msa0725750 | 0.826716 | 2.328193e-54 | -8.615850e-47 |
| Msa0071860 | Msa0725750 | 0.830373 | 3.046655e-55 | -8.615850e-47 |
| Msa0072520 | Msa0725750 | 0.840067 | 1.086730e-57 | -8.615850e-47 |
| Msa0108880 | Msa0725750 | 0.824091 | 9.739468e-54 | -8.615850e-47 |
| Msa0605560 | Msa0725750 | 0.808251 | 3.395374e-50 | -8.615850e-47 |
| Msa0612060 | Msa0725750 | 0.804055 | 2.594974e-49 | -8.615850e-47 |
| Msa0616210 | Msa0725750 | 0.828108 | 1.079493e-54 | -8.615850e-47 |
| Msa0621710 | Msa0725750 | 0.817913 | 2.576313e-52 | -8.615850e-47 |
| Msa0644410 | Msa0725750 | 0.803776 | 2.966518e-49 | -8.615850e-47 |
| Msa0655700 | Msa0725750 | 0.809570 | 1.773055e-50 | -8.615850e-47 |
| Msa0666700 | Msa0725750 | 0.846297 | 2.372814e-59 | -8.615850e-47 |
| Msa0675330 | Msa0725750 | 0.843023 | 1.808198e-58 | -8.615850e-47 |
| Msa0684220 | Msa0725750 | 0.800790 | 1.221527e-48 | -8.615850e-47 |
| Msa0699540 | Msa0725750 | 0.830916 | 2.242768e-55 | -8.615850e-47 |
| Msa0700460 | Msa0725750 | 0.801395 | 9.186735e-49 | -8.615850e-47 |
| Msa0709440 | Msa0725750 | 0.807451 | 5.022311e-50 | -8.615850e-47 |
| Msa0723090 | Msa0725750 | 0.805863 | 1.087227e-49 | -8.615850e-47 |
| Msa0725750 | Msa0725770 | 0.831136 | 1.980967e-55 | -8.615850e-47 |
| Msa0725750 | Msa0738700 | 0.853663 | 2.058616e-61 | -8.615850e-47 |
| Msa0725750 | Msa0756490 | 0.806712 | 7.201927e-50 | -8.615850e-47 |
| Msa0725750 | Msa0819170 | 0.816490 | 5.382706e-52 | -8.615850e-47 |
| Msa0725750 | Msa0859290 | 0.845757 | 3.327156e-59 | -8.615850e-47 |
| Msa0725750 | Msa0931590 | 0.812603 | 3.901490e-51 | -8.615850e-47 |
| Msa0725750 | Msa1020480 | 0.809977 | 1.449084e-50 | -8.615850e-47 |
| Msa0725750 | Msa1021590 | 0.804527 | 2.069711e-49 | -8.615850e-47 |
| Msa0725750 | Msa1029800 | 0.801064 | 1.074140e-48 | -8.615850e-47 |
| Msa0725750 | Msa1040150 | 0.810334 | 1.213710e-50 | -8.615850e-47 |
| Msa0725750 | Msa1040300 | 0.800414 | 1.457260e-48 | -8.615850e-47 |
| Msa0725750 | Msa1042160 | 0.839627 | 1.414867e-57 | -8.615850e-47 |
| Msa0725750 | Msa1042190 | 0.847694 | 9.832790e-60 | -8.615850e-47 |
| Msa0725750 | Msa1051420 | 0.805815 | 1.112413e-49 | -8.615850e-47 |
| Msa0725750 | Msa1072940 | 0.815407 | 9.392242e-52 | -8.615850e-47 |
| Msa0725750 | Msa1078820 | 0.823433 | 1.388777e-53 | -8.615850e-47 |
| Msa0725750 | Msa1080000 | 0.815179 | 1.055583e-51 | -8.615850e-47 |
| Msa0725750 | Msa1081690 | 0.841943 | 3.496887e-58 | -8.615850e-47 |
| Msa0725750 | Msa1084530 | 0.804521 | 2.075513e-49 | -8.615850e-47 |
| Msa0725750 | Msa1123210 | 0.818367 | 2.034613e-52 | -8.615850e-47 |
| Msa0725750 | Msa1123970 | 0.831105 | 2.015580e-55 | -8.615850e-47 |
| Msa0725750 | Msa1125820 | 0.813756 | 2.178732e-51 | -8.615850e-47 |
| Msa0725750 | Msa1125990 | 0.814016 | 1.909590e-51 | -8.615850e-47 |
| Msa0725750 | Msa1160920 | 0.826406 | 2.760507e-54 | -8.615850e-47 |
| Msa0725750 | Msa1166190 | 0.816291 | 5.965952e-52 | -8.615850e-47 |
| Msa0725750 | Msa1167470 | 0.840657 | 7.620854e-58 | -8.615850e-47 |
| Msa0725750 | Msa1169650 | 0.824502 | 7.796272e-54 | -8.615850e-47 |
| Msa0725750 | Msa1171290 | 0.805283 | 1.438414e-49 | -8.615850e-47 |
| Msa0725750 | Msa1307630 | 0.801979 | 6.973092e-49 | -8.615850e-47 |
| Msa0725750 | Msa1315160 | 0.815692 | 8.117523e-52 | -8.615850e-47 |
| Msa0725750 | Msa1351790 | 0.803245 | 3.822331e-49 | -8.615850e-47 |
| Msa0725750 | Msa1368750 | 0.802110 | 6.553668e-49 | -8.615850e-47 |
| Msa0725750 | Msa1374790 | 0.800496 | 1.402410e-48 | -8.615850e-47 |
| Msa0725750 | Msa1380120 | 0.823405 | 1.410024e-53 | -8.615850e-47 |
| Msa0725750 | Msa1393780 | 0.841315 | 5.118719e-58 | -8.615850e-47 |
| Msa0725750 | Msa1405460 | 0.815834 | 7.543668e-52 | -8.615850e-47 |
| Msa0725750 | Msa1409410 | 0.819986 | 8.707404e-53 | -8.615850e-47 |
| Msa0725750 | Msa1410160 | 0.804557 | 2.040319e-49 | -8.615850e-47 |
| Msa0725750 | Msa1415540 | 0.883336 | 4.889760e-71 | -8.615850e-47 |
| Msa0725750 | Msa1417370 | 0.803789 | 2.948023e-49 | -8.615850e-47 |
| Msa0725750 | Msa1440630 | 0.824547 | 7.607549e-54 | -8.615850e-47 |
| Msa0725750 | Msa1451820 | 0.801606 | 8.318653e-49 | -8.615850e-47 |
| Msa0725750 | Msa1452140 | 0.852854 | 3.513427e-61 | -8.615850e-47 |
| Msa0121330 | Msa0725750 | 0.827224 | 1.760629e-54 | -8.615850e-47 |
| Msa0125210 | Msa0725750 | 0.822374 | 2.451592e-53 | -8.615850e-47 |
| Msa0125360 | Msa0725750 | 0.801107 | 1.052216e-48 | -8.615850e-47 |
| Msa0128310 | Msa0725750 | 0.853103 | 2.981663e-61 | -8.615850e-47 |
| Msa0140280 | Msa0725750 | 0.817644 | 2.962620e-52 | -8.615850e-47 |
| Msa0143670 | Msa0725750 | 0.806046 | 9.949294e-50 | -8.615850e-47 |
| Msa0146650 | Msa0725750 | 0.815969 | 7.039212e-52 | -8.615850e-47 |
| Msa0149350 | Msa0725750 | 0.810303 | 1.232915e-50 | -8.615850e-47 |
| Msa0158860 | Msa0725750 | 0.816207 | 6.227434e-52 | -8.615850e-47 |
| Msa0161930 | Msa0725750 | 0.855441 | 6.295566e-62 | -8.615850e-47 |
| Msa0174440 | Msa0725750 | 0.849480 | 3.146708e-60 | -8.615850e-47 |
| Msa0174450 | Msa0725750 | 0.816263 | 6.050898e-52 | -8.615850e-47 |
| Msa0176060 | Msa0725750 | 0.805657 | 1.200910e-49 | -8.615850e-47 |
| Msa0200050 | Msa0725750 | 0.805177 | 1.513704e-49 | -8.615850e-47 |
| Msa0213030 | Msa0725750 | 0.805507 | 1.291023e-49 | -8.615850e-47 |
| Msa0230800 | Msa0725750 | 0.830081 | 3.590083e-55 | -8.615850e-47 |
| Msa0230870 | Msa0725750 | 0.839021 | 2.032453e-57 | -8.615850e-47 |
| Msa0375640 | Msa0725750 | 0.800515 | 1.390184e-48 | -8.615850e-47 |
| Msa0380670 | Msa0725750 | 0.815831 | 7.555085e-52 | -8.615850e-47 |
| Msa0400650 | Msa0725750 | 0.805636 | 1.212841e-49 | -8.615850e-47 |
| Msa0401970 | Msa0725750 | 0.802184 | 6.328829e-49 | -8.615850e-47 |
| Msa0426530 | Msa0725750 | 0.825971 | 3.502917e-54 | -8.615850e-47 |
| Msa0430300 | Msa0725750 | 0.821987 | 3.013346e-53 | -8.615850e-47 |
| Msa0431200 | Msa0725750 | 0.811880 | 5.610749e-51 | -8.615850e-47 |
| Msa0432010 | Msa0725750 | 0.801673 | 8.059240e-49 | -8.615850e-47 |
| Msa0457570 | Msa0725750 | 0.805797 | 1.122146e-49 | -8.615850e-47 |
| Msa0472950 | Msa0725750 | 0.845221 | 4.649766e-59 | -8.615850e-47 |
| Msa0479320 | Msa0725750 | 0.807372 | 5.219870e-50 | -8.615850e-47 |
| Msa0481890 | Msa0725750 | 0.803344 | 3.646452e-49 | -8.615850e-47 |
| Msa0270340 | Msa0725750 | 0.800496 | 1.402710e-48 | -8.615850e-47 |
| Msa0284800 | Msa0725750 | 0.805827 | 1.106318e-49 | -8.615850e-47 |
| Msa0298470 | Msa0725750 | 0.804060 | 2.589946e-49 | -8.615850e-47 |
| Msa0307270 | Msa0725750 | 0.805330 | 1.406596e-49 | -8.615850e-47 |
| Msa0330520 | Msa0725750 | 0.825760 | 3.931650e-54 | -8.615850e-47 |
| Msa0340500 | Msa0725750 | 0.804981 | 1.664261e-49 | -8.615850e-47 |
| Msa0517250 | Msa0725750 | 0.844993 | 5.357252e-59 | -8.615850e-47 |
| Msa0520260 | Msa0725750 | 0.815022 | 1.143756e-51 | -8.615850e-47 |
| Msa0528570 | Msa0725750 | 0.875463 | 3.020487e-68 | -8.615850e-47 |
| Msa0529030 | Msa0725750 | 0.821967 | 3.045786e-53 | -8.615850e-47 |
| Msa0531960 | Msa0725750 | 0.820401 | 6.993361e-53 | -8.615850e-47 |
| Msa0541300 | Msa0725750 | 0.836982 | 6.798444e-57 | -8.615850e-47 |
| Msa0541310 | Msa0725750 | 0.837720 | 4.401565e-57 | -8.615850e-47 |
| Msa0550050 | Msa0725750 | 0.816703 | 4.823217e-52 | -8.615850e-47 |
| Msa0557460 | Msa0725750 | 0.807746 | 4.347065e-50 | -8.615850e-47 |
| Msa0567170 | Msa0725750 | 0.801861 | 7.372751e-49 | -8.615850e-47 |
| Msa0580810 | Msa0725750 | 0.817022 | 4.091400e-52 | -8.615850e-47 |
| Msa0585020 | Msa0725750 | 0.838623 | 2.576843e-57 | -8.615850e-47 |
| Msa0587620 | Msa0725750 | 0.802057 | 6.720466e-49 | -8.615850e-47 |
| Msa0588920 | Msa0725750 | 0.823830 | 1.121315e-53 | -8.615850e-47 |
| Msa0597270 | Msa0725750 | 0.854247 | 1.397453e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725750 | MtrunA17_Chr5g0417511 | 97.610 | 544 | 12 | 1 | 1 | 544 | 1 | 543 | 0.0 | 1094 |
| Msa0725750 | MtrunA17_Chr5g0398121 | 43.636 | 550 | 229 | 12 | 54 | 539 | 48 | 580 | 1.23e-141 | 421 |
| Msa0725750 | MtrunA17_Chr8g0342061 | 40.169 | 590 | 264 | 13 | 15 | 532 | 7 | 579 | 1.67e-128 | 387 |
| Msa0725750 | MtrunA17_Chr2g0330251 | 42.251 | 542 | 233 | 14 | 54 | 532 | 63 | 587 | 1.89e-128 | 387 |
| Msa0725750 | MtrunA17_Chr1g0203971 | 40.299 | 536 | 239 | 10 | 53 | 524 | 16 | 534 | 4.84e-124 | 374 |
| Msa0725750 | MtrunA17_Chr5g0398141 | 39.868 | 454 | 194 | 13 | 148 | 537 | 5 | 443 | 3.38e-95 | 297 |
| Msa0725750 | MtrunA17_Chr4g0000501 | 40.794 | 277 | 123 | 8 | 290 | 533 | 6 | 274 | 1.71e-56 | 191 |
| Msa0725750 | MtrunA17_Chr4g0000491 | 52.195 | 205 | 84 | 4 | 31 | 222 | 24 | 227 | 1.40e-54 | 184 |
| Msa0725750 | MtrunA17_Chr1g0203951 | 53.659 | 123 | 51 | 2 | 53 | 175 | 22 | 138 | 5.65e-37 | 134 |
| Msa0725750 | MtrunA17_Chr5g0398131 | 60.000 | 100 | 38 | 1 | 54 | 153 | 13 | 110 | 2.81e-32 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725750 | AT1G14190.2 | 59.231 | 520 | 196 | 6 | 18 | 537 | 6 | 509 | 0.0 | 629 |
| Msa0725750 | AT1G14185.1 | 59.768 | 517 | 190 | 6 | 16 | 532 | 5 | 503 | 0.0 | 623 |
| Msa0725750 | AT1G14190.1 | 60.563 | 497 | 185 | 5 | 41 | 537 | 3 | 488 | 0.0 | 623 |
| Msa0725750 | AT1G72970.1 | 43.773 | 546 | 221 | 15 | 53 | 532 | 62 | 587 | 7.06e-133 | 399 |
| Msa0725750 | AT5G51950.2 | 43.066 | 548 | 226 | 12 | 54 | 533 | 13 | 542 | 5.42e-132 | 395 |
| Msa0725750 | AT5G51950.3 | 43.066 | 548 | 226 | 12 | 54 | 533 | 46 | 575 | 2.33e-131 | 395 |
| Msa0725750 | AT5G51950.1 | 43.091 | 550 | 225 | 13 | 54 | 533 | 46 | 577 | 3.65e-131 | 395 |
| Msa0725750 | AT3G56060.1 | 41.760 | 534 | 244 | 12 | 54 | 532 | 46 | 567 | 3.67e-130 | 392 |
| Msa0725750 | AT1G73050.1 | 44.618 | 511 | 237 | 13 | 54 | 532 | 54 | 550 | 4.58e-130 | 390 |
| Msa0725750 | AT1G72970.2 | 44.297 | 526 | 220 | 13 | 53 | 532 | 62 | 560 | 3.98e-129 | 389 |
| Msa0725750 | AT1G12570.1 | 40.171 | 585 | 265 | 14 | 13 | 535 | 10 | 571 | 5.11e-129 | 389 |
| Msa0725750 | AT5G51930.2 | 41.651 | 545 | 239 | 12 | 53 | 537 | 25 | 550 | 5.13e-118 | 360 |
| Msa0725750 | AT5G51930.1 | 41.698 | 530 | 230 | 12 | 53 | 522 | 72 | 582 | 2.06e-112 | 346 |
Find 116 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAGAACTGTGAGGTTCTT+TGG | 0.218105 | 5_1:+25563080 | None:intergenic |
| GTTATAGTTTGGAGCATATC+AGG | 0.227435 | 5_1:-25563181 | Msa0725750:CDS |
| ATCAGGGGAACCAAGATTTC+TGG | 0.241263 | 5_1:-25563164 | Msa0725750:CDS |
| CTTGATTCATTGATGCTTAG+TGG | 0.272621 | 5_1:+25561957 | None:intergenic |
| CAAAGTTCATGGTATAATAA+AGG | 0.282447 | 5_1:-25561616 | Msa0725750:CDS |
| CAGATTCTGTTTCCCTTTGT+TGG | 0.284554 | 5_1:+25561493 | None:intergenic |
| GCCCTACAATGGTTATAGTT+TGG | 0.297158 | 5_1:-25563192 | Msa0725750:CDS |
| TGGTATAATAAAGGGATTAA+AGG | 0.300333 | 5_1:-25561607 | Msa0725750:CDS |
| TGCATTTGATTTGTGAATAG+AGG | 0.336515 | 5_1:+25564204 | None:intergenic |
| CCCCTTGAAGTTGAATGGTT+TGG | 0.336997 | 5_1:+25562233 | None:intergenic |
| ACTAATTGTAATACTAGATA+TGG | 0.340483 | 5_1:-25564178 | Msa0725750:exon |
| GGTGGCTCATCAGCTATAAA+TGG | 0.349307 | 5_1:-25563383 | Msa0725750:CDS |
| GTAATTGATAGAAGATACTA+TGG | 0.351305 | 5_1:-25563500 | Msa0725750:CDS |
| CATCACCCCTTGAAGTTGAA+TGG | 0.386140 | 5_1:+25562228 | None:intergenic |
| GGGAGTGTGTTCGATGGGTT+TGG | 0.390222 | 5_1:-25563143 | Msa0725750:CDS |
| AAAGTTCATGGTATAATAAA+GGG | 0.398493 | 5_1:-25561615 | Msa0725750:CDS |
| ATATTATCAGCAGGTGCATT+AGG | 0.405342 | 5_1:-25562203 | Msa0725750:CDS |
| ACTAGTTCATGAAATGAAAC+AGG | 0.408524 | 5_1:-25562114 | Msa0725750:CDS |
| GAAAGAGGTGGTTCACCATA+TGG | 0.411776 | 5_1:-25563533 | Msa0725750:CDS |
| AATAAAGGGATTAAAGGTAT+TGG | 0.413608 | 5_1:-25561601 | Msa0725750:CDS |
| CTCCAAACTATAACCATTGT+AGG | 0.417066 | 5_1:+25563190 | None:intergenic |
| CCTGATCCACCACAAATTGC+AGG | 0.417262 | 5_1:-25562023 | Msa0725750:CDS |
| AATGTGAGAGGAAGAGTTCT+TGG | 0.424602 | 5_1:-25563404 | Msa0725750:CDS |
| ATAGCAATGCCTCTTTCAAA+AGG | 0.425278 | 5_1:-25561915 | Msa0725750:CDS |
| GCACATGACTTCAGATGTTA+AGG | 0.425665 | 5_1:-25563657 | Msa0725750:CDS |
| GATCATTGTTGCTCAGTTCA+AGG | 0.428453 | 5_1:+25561889 | None:intergenic |
| CACTAAGCATCAATGAATCA+AGG | 0.429122 | 5_1:-25561956 | Msa0725750:CDS |
| TTCACAGCAGGGTTAAGCCT+TGG | 0.437687 | 5_1:+25561867 | None:intergenic |
| GTATCTTCTATCAATTACTA+AGG | 0.444205 | 5_1:+25563505 | None:intergenic |
| GAATTTAGTCTTCTCGAAAC+GGG | 0.449569 | 5_1:-25563221 | Msa0725750:CDS |
| GATAAAGACTACAAAGTTCA+TGG | 0.455678 | 5_1:-25561627 | Msa0725750:CDS |
| ATTACTAAGGGATTTCCATA+TGG | 0.457033 | 5_1:+25563518 | None:intergenic |
| TCTGTTATGCCTGCAATTTG+TGG | 0.462136 | 5_1:+25562014 | None:intergenic |
| GATGAATTTGTTGATAAAGT+TGG | 0.462185 | 5_1:-25563338 | Msa0725750:CDS |
| GATGATTATATTTGTTAATG+TGG | 0.463711 | 5_1:+25564231 | None:intergenic |
| AACCAAACCATTCAACTTCA+AGG | 0.464351 | 5_1:-25562235 | Msa0725750:CDS |
| TCAGGGGAACCAAGATTTCT+GGG | 0.466094 | 5_1:-25563163 | Msa0725750:CDS |
| ATGATTATATTTGTTAATGT+GGG | 0.469583 | 5_1:+25564232 | None:intergenic |
| TGAGTCACAGCAAAGCAAAT+TGG | 0.470372 | 5_1:-25561742 | Msa0725750:CDS |
| GAACACACTCCCAGAAATCT+TGG | 0.472302 | 5_1:+25563154 | None:intergenic |
| CCTGCAATTTGTGGTGGATC+AGG | 0.472565 | 5_1:+25562023 | None:intergenic |
| ATGGTTTGGTTTCTTGATGT+AGG | 0.472808 | 5_1:+25562247 | None:intergenic |
| TGAATTTAGTCTTCTCGAAA+CGG | 0.479430 | 5_1:-25563222 | Msa0725750:CDS |
| ATTTGTTGATAAAGTTGGTT+GGG | 0.480078 | 5_1:-25563333 | Msa0725750:CDS |
| TTGTTAAAGAAGCTTATGAA+TGG | 0.481724 | 5_1:-25563301 | Msa0725750:CDS |
| TCATATGACTACATTATAGT+TGG | 0.482506 | 5_1:-25563620 | Msa0725750:CDS |
| TCAGATGTTAAGGAAGTAGC+AGG | 0.483871 | 5_1:-25563647 | Msa0725750:CDS |
| TTCATAGTACTTGCAAATTG+TGG | 0.490761 | 5_1:-25564102 | Msa0725750:CDS |
| TCAGCTGATCTTCTTGAGGC+TGG | 0.493708 | 5_1:-25563107 | Msa0725750:CDS |
| CAAAGATTCACTTCAGAAGA+TGG | 0.495094 | 5_1:-25563434 | Msa0725750:CDS |
| AGATAGTTGAATTTCACAGC+AGG | 0.506395 | 5_1:+25561855 | None:intergenic |
| TGTTAAAGAAGCTTATGAAT+GGG | 0.509588 | 5_1:-25563300 | Msa0725750:CDS |
| GTATCAAGATTCTCCAACAA+AGG | 0.511803 | 5_1:-25561506 | Msa0725750:CDS |
| AGAACTATCTATCACTATCA+TGG | 0.512229 | 5_1:-25561675 | Msa0725750:CDS |
| TGTTTCATTTCATGAACTAG+TGG | 0.512739 | 5_1:+25562116 | None:intergenic |
| CACTTAGAAGCAAAAGTTGA+GGG | 0.515952 | 5_1:+25562177 | None:intergenic |
| TATCAAGATTCTCCAACAAA+GGG | 0.517558 | 5_1:-25561505 | Msa0725750:CDS |
| CAAGAATGAAACAAGGGCTA+AGG | 0.518092 | 5_1:-25562318 | Msa0725750:CDS |
| GTCACCAGGTACTAATCCTA+TGG | 0.519218 | 5_1:-25561559 | Msa0725750:CDS |
| TATCATGGTGGTTGCAATGT+TGG | 0.521673 | 5_1:-25561660 | Msa0725750:CDS |
| AATTTGTTGATAAAGTTGGT+TGG | 0.526334 | 5_1:-25563334 | Msa0725750:CDS |
| TCTGATAGAGTAGCTGCTAA+AGG | 0.528626 | 5_1:+25563578 | None:intergenic |
| TTGATTTGTGAATAGAGGAA+AGG | 0.529069 | 5_1:+25564209 | None:intergenic |
| TATGACTACATTATAGTTGG+AGG | 0.537388 | 5_1:-25563617 | Msa0725750:CDS |
| TTTCTGGGAGTGTGTTCGAT+GGG | 0.541236 | 5_1:-25563148 | Msa0725750:CDS |
| AGCATCATCTTTCATTACAA+TGG | 0.542353 | 5_1:-25563041 | Msa0725750:intron |
| GGCATACCTTGAGGTTCTGA+AGG | 0.543372 | 5_1:+25564069 | None:intergenic |
| GATAGTTGAATTTCACAGCA+GGG | 0.544877 | 5_1:+25561856 | None:intergenic |
| ATTTCTGGGAGTGTGTTCGA+TGG | 0.544976 | 5_1:-25563149 | Msa0725750:CDS |
| TGCTTTGCTGTGACTCACCA+AGG | 0.547039 | 5_1:+25561748 | None:intergenic |
| TTATTGTCTTTCTGAATCAG+TGG | 0.548927 | 5_1:+25563473 | None:intergenic |
| ACCAAACCATTCAACTTCAA+GGG | 0.551680 | 5_1:-25562234 | Msa0725750:CDS |
| TAGCAATGCCTCTTTCAAAA+GGG | 0.552326 | 5_1:-25561914 | Msa0725750:CDS |
| TTGATGCTAGGAAGGTATCA+AGG | 0.552478 | 5_1:-25561528 | Msa0725750:CDS |
| ATCAAGTTCATCAAGAGCAA+TGG | 0.555481 | 5_1:-25562293 | Msa0725750:CDS |
| TCTGTGCTACTAATAGAAAG+AGG | 0.556445 | 5_1:-25563548 | Msa0725750:CDS |
| GTTATGCCTGCAATTTGTGG+TGG | 0.556647 | 5_1:+25562017 | None:intergenic |
| TTATAGTTTGGAGCATATCA+GGG | 0.558056 | 5_1:-25563180 | Msa0725750:CDS |
| GATGGTGTTAGCAATGTGAG+AGG | 0.558102 | 5_1:-25563416 | Msa0725750:CDS |
| TATCTTCTATCAATTACTAA+GGG | 0.565588 | 5_1:+25563506 | None:intergenic |
| AAGAATGAAACAAGGGCTAA+GGG | 0.566252 | 5_1:-25562317 | Msa0725750:CDS |
| GGTGATGTCATATTATCAGC+AGG | 0.568505 | 5_1:-25562212 | Msa0725750:CDS |
| GAAATGAAACAGGTTGGTCA+AGG | 0.573424 | 5_1:-25562104 | Msa0725750:CDS |
| TTATGAACATGTTTGATTTG+TGG | 0.574694 | 5_1:+25564150 | None:intergenic |
| TCAACTAAGATTGCTATGCA+AGG | 0.575435 | 5_1:+25562068 | None:intergenic |
| TCTTTCCCTTCAGAACCTCA+AGG | 0.575879 | 5_1:-25564075 | Msa0725750:intron |
| TCCAAACTATAACCATTGTA+GGG | 0.585018 | 5_1:+25563191 | None:intergenic |
| AACTGAGCAACAATGATCCA+AGG | 0.586972 | 5_1:-25561884 | Msa0725750:CDS |
| AATTACTCAATAAAATTGCA+AGG | 0.588567 | 5_1:-25561791 | Msa0725750:CDS |
| ACTAAGCATCAATGAATCAA+GGG | 0.592050 | 5_1:-25561955 | Msa0725750:CDS |
| GTTCATGAAATGAAACAGGT+TGG | 0.592262 | 5_1:-25562110 | Msa0725750:CDS |
| TAAAGAAGCTTATGAATGGG+TGG | 0.595958 | 5_1:-25563297 | Msa0725750:CDS |
| AAGGGATTAAAGGTATTGGA+TGG | 0.596369 | 5_1:-25561597 | Msa0725750:CDS |
| CAACTAAGATTGCTATGCAA+GGG | 0.598474 | 5_1:+25562069 | None:intergenic |
| GACTACATTATAGTTGGAGG+AGG | 0.604634 | 5_1:-25563614 | Msa0725750:CDS |
| GGCTCATCAGCTATAAATGG+TGG | 0.608408 | 5_1:-25563380 | Msa0725750:CDS |
| CAGGTGACAAGAATGAAACA+AGG | 0.617011 | 5_1:-25562325 | Msa0725750:CDS |
| GTGAGAGGAAGAGTTCTTGG+TGG | 0.618458 | 5_1:-25563401 | Msa0725750:CDS |
| TACCTCAGCTGATCTTCTTG+AGG | 0.626186 | 5_1:-25563111 | Msa0725750:CDS |
| CCAAACCATTCAACTTCAAG+GGG | 0.628346 | 5_1:-25562233 | Msa0725750:CDS |
| ACAATGTAGGTAAGAGACAA+TGG | 0.631201 | 5_1:-25563679 | Msa0725750:intron |
| ATAGTTGGAGGAGGTACATG+TGG | 0.636326 | 5_1:-25563605 | Msa0725750:CDS |
| AGCATCAAAAGTGTAGCCAT+AGG | 0.642151 | 5_1:+25561543 | None:intergenic |
| CCACTTAGAAGCAAAAGTTG+AGG | 0.648037 | 5_1:+25562176 | None:intergenic |
| TATAGTTTGGAGCATATCAG+GGG | 0.653579 | 5_1:-25563179 | Msa0725750:CDS |
| GCATACCTTGAGGTTCTGAA+GGG | 0.657561 | 5_1:+25564070 | None:intergenic |
| AGCCTCAAGAAGATCAGCTG+AGG | 0.672209 | 5_1:+25563109 | None:intergenic |
| AATTCAGCAACAGATTGCCA+TGG | 0.672603 | 5_1:+25563239 | None:intergenic |
| CAGATGTTAAGGAAGTAGCA+GGG | 0.681711 | 5_1:-25563646 | Msa0725750:CDS |
| GTGCTACTAATAGAAAGAGG+TGG | 0.687300 | 5_1:-25563545 | Msa0725750:CDS |
| TGGTTGCAATGTTGGAACAG+TGG | 0.690046 | 5_1:-25561652 | Msa0725750:CDS |
| GTAGCCATAGGATTAGTACC+TGG | 0.693537 | 5_1:+25561555 | None:intergenic |
| AGGTGACAAGAATGAAACAA+GGG | 0.702447 | 5_1:-25562324 | Msa0725750:CDS |
| ACTATCTATCACTATCATGG+TGG | 0.706690 | 5_1:-25561672 | Msa0725750:CDS |
| AAAGATGATGCTCTTCACTG+TGG | 0.719776 | 5_1:+25563052 | None:intergenic |
| TGGCATTCACAAGAACTGTG+AGG | 0.769878 | 5_1:+25563072 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAACAAATTTGAAAAT+TGG | + | chr5_1:25564214-25564233 | None:intergenic | 10.0% |
| !!! | ATGATTATATTTGTTAATGT+GGG | + | chr5_1:25561296-25561315 | None:intergenic | 15.0% |
| !!! | AATTTTTTCAATTGTTCTTT+TGG | + | chr5_1:25563382-25563401 | None:intergenic | 15.0% |
| !!! | GATGATTATATTTGTTAATG+TGG | + | chr5_1:25561297-25561316 | None:intergenic | 20.0% |
| !! | ACTAATTGTAATACTAGATA+TGG | - | chr5_1:25561347-25561366 | Msa0725750:three_prime_UTR | 20.0% |
| !!! | CAATTTTATTTCTACAATGT+AGG | - | chr5_1:25561833-25561852 | Msa0725750:CDS | 20.0% |
| !! | TATCTTCTATCAATTACTAA+GGG | + | chr5_1:25562022-25562041 | None:intergenic | 20.0% |
| !!! | ATAATTTTTTTATGTCTCTG+TGG | - | chr5_1:25562582-25562601 | Msa0725750:intron | 20.0% |
| !! | ATCATCTTCCATAATTTAAA+GGG | - | chr5_1:25562693-25562712 | Msa0725750:intron | 20.0% |
| !! | AAGTTGAAGATTTCAAAAAA+CGG | - | chr5_1:25562989-25563008 | Msa0725750:intron | 20.0% |
| !! | AATTACTCAATAAAATTGCA+AGG | - | chr5_1:25563734-25563753 | Msa0725750:intron | 20.0% |
| !! | AAAGTTCATGGTATAATAAA+GGG | - | chr5_1:25563910-25563929 | Msa0725750:intron | 20.0% |
| !! | AAAATGTGTGTGAAAAAATA+AGG | - | chr5_1:25564106-25564125 | Msa0725750:CDS | 20.0% |
| !!! | TTATGAACATGTTTGATTTG+TGG | + | chr5_1:25561378-25561397 | None:intergenic | 25.0% |
| ! | AACAAAAATACAACAAAGAG+AGG | + | chr5_1:25561402-25561421 | None:intergenic | 25.0% |
| ! | TTTATCTGTTATGTTAGTCA+GGG | - | chr5_1:25561522-25561541 | Msa0725750:CDS | 25.0% |
| ! | TATGAAACATCGATACAATA+TGG | + | chr5_1:25561721-25561740 | None:intergenic | 25.0% |
| !! | TTTCTTTTAAGCTTGAAACA+AGG | - | chr5_1:25561800-25561819 | Msa0725750:CDS | 25.0% |
| ! | TCATATGACTACATTATAGT+TGG | - | chr5_1:25561905-25561924 | Msa0725750:CDS | 25.0% |
| ! | GTATCTTCTATCAATTACTA+AGG | + | chr5_1:25562023-25562042 | None:intergenic | 25.0% |
| ! | GTAATTGATAGAAGATACTA+TGG | - | chr5_1:25562025-25562044 | Msa0725750:CDS | 25.0% |
| !!! | GATGAATTTGTTGATAAAGT+TGG | - | chr5_1:25562187-25562206 | Msa0725750:CDS | 25.0% |
| !!! | AATTTGTTGATAAAGTTGGT+TGG | - | chr5_1:25562191-25562210 | Msa0725750:CDS | 25.0% |
| !! | ATTTGTTGATAAAGTTGGTT+GGG | - | chr5_1:25562192-25562211 | Msa0725750:CDS | 25.0% |
| ! | TTGTTAAAGAAGCTTATGAA+TGG | - | chr5_1:25562224-25562243 | Msa0725750:CDS | 25.0% |
| ! | TGTTAAAGAAGCTTATGAAT+GGG | - | chr5_1:25562225-25562244 | Msa0725750:CDS | 25.0% |
| ! | ATTCATCTTCCATAGTTTAA+AGG | - | chr5_1:25562629-25562648 | Msa0725750:intron | 25.0% |
| ! | CATCATCTTCCATAATTTAA+AGG | - | chr5_1:25562692-25562711 | Msa0725750:intron | 25.0% |
| !! | TTTTCTTGCAAAACTTTCTA+AGG | + | chr5_1:25563825-25563844 | None:intergenic | 25.0% |
| ! | CAAAGTTCATGGTATAATAA+AGG | - | chr5_1:25563909-25563928 | Msa0725750:intron | 25.0% |
| ! | TGGTATAATAAAGGGATTAA+AGG | - | chr5_1:25563918-25563937 | Msa0725750:intron | 25.0% |
| !! | AATAAAGGGATTAAAGGTAT+TGG | - | chr5_1:25563924-25563943 | Msa0725750:intron | 25.0% |
| !! | GAAAAAATAAGGCATCATTT+AGG | - | chr5_1:25564117-25564136 | Msa0725750:CDS | 25.0% |
| !! | ATTTTACAACACACTTTGTT+AGG | + | chr5_1:25564152-25564171 | None:intergenic | 25.0% |
| !! | TTGATTTGTGAATAGAGGAA+AGG | + | chr5_1:25561319-25561338 | None:intergenic | 30.0% |
| !! | TGCATTTGATTTGTGAATAG+AGG | + | chr5_1:25561324-25561343 | None:intergenic | 30.0% |
| TTCATAGTACTTGCAAATTG+TGG | - | chr5_1:25561423-25561442 | Msa0725750:three_prime_UTR | 30.0% | |
| GTTTATCTGTTATGTTAGTC+AGG | - | chr5_1:25561521-25561540 | Msa0725750:CDS | 30.0% | |
| ! | TAAAAGTGTATGTGTTGTGT+TGG | + | chr5_1:25561627-25561646 | None:intergenic | 30.0% |
| ATTTAAGCCAAGACAATAGA+AGG | + | chr5_1:25561760-25561779 | None:intergenic | 30.0% | |
| AAAGAAACCAAACATCTATG+AGG | + | chr5_1:25561787-25561806 | None:intergenic | 30.0% | |
| TATGACTACATTATAGTTGG+AGG | - | chr5_1:25561908-25561927 | Msa0725750:CDS | 30.0% | |
| ATTACTAAGGGATTTCCATA+TGG | + | chr5_1:25562010-25562029 | None:intergenic | 30.0% | |
| TTATTGTCTTTCTGAATCAG+TGG | + | chr5_1:25562055-25562074 | None:intergenic | 30.0% | |
| ! | TGAATTTAGTCTTCTCGAAA+CGG | - | chr5_1:25562303-25562322 | Msa0725750:CDS | 30.0% |
| TCCAAACTATAACCATTGTA+GGG | + | chr5_1:25562337-25562356 | None:intergenic | 30.0% | |
| ! | TTATAGTTTGGAGCATATCA+GGG | - | chr5_1:25562345-25562364 | Msa0725750:intron | 30.0% |
| AGCATCATCTTTCATTACAA+TGG | - | chr5_1:25562484-25562503 | Msa0725750:intron | 30.0% | |
| AACTACATGTAATAAGTGCA+AGG | - | chr5_1:25562537-25562556 | Msa0725750:intron | 30.0% | |
| TAGCCACAATGTTAAAACTA+CGG | + | chr5_1:25562749-25562768 | None:intergenic | 30.0% | |
| CAATGACCATACAATTTAGA+GGG | - | chr5_1:25562920-25562939 | Msa0725750:intron | 30.0% | |
| AAGATTTCAAAAAACGGTCT+AGG | - | chr5_1:25562995-25563014 | Msa0725750:intron | 30.0% | |
| GCAACTGCAATACAATTAAA+TGG | + | chr5_1:25563058-25563077 | None:intergenic | 30.0% | |
| ! | AGTCATGATATCTGATAATG+TGG | + | chr5_1:25563089-25563108 | None:intergenic | 30.0% |
| !!! | CTAGGTTTTAAATCACAGTT+AGG | + | chr5_1:25563116-25563135 | None:intergenic | 30.0% |
| TGTTTCATTTCATGAACTAG+TGG | + | chr5_1:25563412-25563431 | None:intergenic | 30.0% | |
| ACTAGTTCATGAAATGAAAC+AGG | - | chr5_1:25563411-25563430 | Msa0725750:CDS | 30.0% | |
| ACTAAGCATCAATGAATCAA+GGG | - | chr5_1:25563570-25563589 | Msa0725750:CDS | 30.0% | |
| AAGGAAAAATGCAATAGACT+TGG | + | chr5_1:25563761-25563780 | None:intergenic | 30.0% | |
| ! | AAGTCTATTGCATTTTTCCT+TGG | - | chr5_1:25563760-25563779 | Msa0725750:intron | 30.0% |
| AGAACTATCTATCACTATCA+TGG | - | chr5_1:25563850-25563869 | Msa0725750:intron | 30.0% | |
| GATAAAGACTACAAAGTTCA+TGG | - | chr5_1:25563898-25563917 | Msa0725750:intron | 30.0% | |
| TATCAAGATTCTCCAACAAA+GGG | - | chr5_1:25564020-25564039 | Msa0725750:intron | 30.0% | |
| ! | CGAAGCATAATGAGCTTTAT+AGG | + | chr5_1:25561480-25561499 | None:intergenic | 35.0% |
| ! | TGAAGTGTCAATGCTACATA+AGG | + | chr5_1:25561564-25561583 | None:intergenic | 35.0% |
| !! | GTAGCATTGACACTTCAAAT+TGG | - | chr5_1:25561567-25561586 | Msa0725750:CDS | 35.0% |
| ! | TTTTGGACACTGACATGTAT+TGG | + | chr5_1:25561604-25561623 | None:intergenic | 35.0% |
| !!! | TGTATGTGTTGTGTTGGTTT+TGG | + | chr5_1:25561621-25561640 | None:intergenic | 35.0% |
| !!! | TATCGTTGTCAGTGTCATTT+TGG | - | chr5_1:25561692-25561711 | Msa0725750:CDS | 35.0% |
| TCAAACTCCTTCTATTGTCT+TGG | - | chr5_1:25561750-25561769 | Msa0725750:CDS | 35.0% | |
| AATTACGCCTCATAGATGTT+TGG | - | chr5_1:25561777-25561796 | Msa0725750:CDS | 35.0% | |
| ACAATGTAGGTAAGAGACAA+TGG | - | chr5_1:25561846-25561865 | Msa0725750:CDS | 35.0% | |
| ! | TCTGTGCTACTAATAGAAAG+AGG | - | chr5_1:25561977-25561996 | Msa0725750:CDS | 35.0% |
| CAAAGATTCACTTCAGAAGA+TGG | - | chr5_1:25562091-25562110 | Msa0725750:CDS | 35.0% | |
| TAAAGAAGCTTATGAATGGG+TGG | - | chr5_1:25562228-25562247 | Msa0725750:CDS | 35.0% | |
| ! | GAATTTAGTCTTCTCGAAAC+GGG | - | chr5_1:25562304-25562323 | Msa0725750:CDS | 35.0% |
| CTCCAAACTATAACCATTGT+AGG | + | chr5_1:25562338-25562357 | None:intergenic | 35.0% | |
| ! | GTTATAGTTTGGAGCATATC+AGG | - | chr5_1:25562344-25562363 | Msa0725750:intron | 35.0% |
| ! | TATAGTTTGGAGCATATCAG+GGG | - | chr5_1:25562346-25562365 | Msa0725750:intron | 35.0% |
| TGACAGGACCCTTTAAATTA+TGG | + | chr5_1:25562704-25562723 | None:intergenic | 35.0% | |
| TTGCATCGCAAGTAAAATTG+TGG | + | chr5_1:25562777-25562796 | None:intergenic | 35.0% | |
| ! | ACAATTTTACTTGCGATGCA+AGG | - | chr5_1:25562776-25562795 | Msa0725750:intron | 35.0% |
| ! | CAATTTTACTTGCGATGCAA+GGG | - | chr5_1:25562777-25562796 | Msa0725750:intron | 35.0% |
| ! | AATTTTACTTGCGATGCAAG+GGG | - | chr5_1:25562778-25562797 | Msa0725750:intron | 35.0% |
| ! | ATCTGAAATTGCATTCGCAA+CGG | + | chr5_1:25562805-25562824 | None:intergenic | 35.0% |
| GAATGCAATTTCAGATATCC+TGG | - | chr5_1:25562809-25562828 | Msa0725750:intron | 35.0% | |
| AAGATTGTTGAAGTTCTGCA+AGG | + | chr5_1:25562875-25562894 | None:intergenic | 35.0% | |
| CCTCTAAATTGTATGGTCAT+TGG | + | chr5_1:25562922-25562941 | None:intergenic | 35.0% | |
| CCAATGACCATACAATTTAG+AGG | - | chr5_1:25562919-25562938 | Msa0725750:intron | 35.0% | |
| ATTCTGTTGCTACGTATTCT+AGG | + | chr5_1:25563134-25563153 | None:intergenic | 35.0% | |
| TTCTTGAAATTTGACCACTC+AGG | - | chr5_1:25563181-25563200 | Msa0725750:CDS | 35.0% | |
| AGGTGACAAGAATGAAACAA+GGG | - | chr5_1:25563201-25563220 | Msa0725750:CDS | 35.0% | |
| AAGAATGAAACAAGGGCTAA+GGG | - | chr5_1:25563208-25563227 | Msa0725750:CDS | 35.0% | |
| ATCAAGTTCATCAAGAGCAA+TGG | - | chr5_1:25563232-25563251 | Msa0725750:CDS | 35.0% | |
| !! | ATGGTTTGGTTTCTTGATGT+AGG | + | chr5_1:25563281-25563300 | None:intergenic | 35.0% |
| AACCAAACCATTCAACTTCA+AGG | - | chr5_1:25563290-25563309 | Msa0725750:CDS | 35.0% | |
| ACCAAACCATTCAACTTCAA+GGG | - | chr5_1:25563291-25563310 | Msa0725750:CDS | 35.0% | |
| ATATTATCAGCAGGTGCATT+AGG | - | chr5_1:25563322-25563341 | Msa0725750:CDS | 35.0% | |
| CACTTAGAAGCAAAAGTTGA+GGG | + | chr5_1:25563351-25563370 | None:intergenic | 35.0% | |
| GTTCATGAAATGAAACAGGT+TGG | - | chr5_1:25563415-25563434 | Msa0725750:CDS | 35.0% | |
| CAACTAAGATTGCTATGCAA+GGG | + | chr5_1:25563459-25563478 | None:intergenic | 35.0% | |
| TCAACTAAGATTGCTATGCA+AGG | + | chr5_1:25563460-25563479 | None:intergenic | 35.0% | |
| CTTGATTCATTGATGCTTAG+TGG | + | chr5_1:25563571-25563590 | None:intergenic | 35.0% | |
| CACTAAGCATCAATGAATCA+AGG | - | chr5_1:25563569-25563588 | Msa0725750:CDS | 35.0% | |
| ATAGCAATGCCTCTTTCAAA+AGG | - | chr5_1:25563610-25563629 | Msa0725750:CDS | 35.0% | |
| TAGCAATGCCTCTTTCAAAA+GGG | - | chr5_1:25563611-25563630 | Msa0725750:CDS | 35.0% | |
| GATAGTTGAATTTCACAGCA+GGG | + | chr5_1:25563672-25563691 | None:intergenic | 35.0% | |
| AGATAGTTGAATTTCACAGC+AGG | + | chr5_1:25563673-25563692 | None:intergenic | 35.0% | |
| ACTATCTATCACTATCATGG+TGG | - | chr5_1:25563853-25563872 | Msa0725750:intron | 35.0% | |
| !! | AAGGGATTAAAGGTATTGGA+TGG | - | chr5_1:25563928-25563947 | Msa0725750:intron | 35.0% |
| GTATCAAGATTCTCCAACAA+AGG | - | chr5_1:25564019-25564038 | Msa0725750:intron | 35.0% | |
| ! | AGCTTTATAGGCATACCTTG+AGG | + | chr5_1:25561468-25561487 | None:intergenic | 40.0% |
| GTTAGTCAGGGTTTGAATTC+TGG | - | chr5_1:25561534-25561553 | Msa0725750:CDS | 40.0% | |
| AGTGTCAATGCTACATAAGG+AGG | + | chr5_1:25561561-25561580 | None:intergenic | 40.0% | |
| GCACATGACTTCAGATGTTA+AGG | - | chr5_1:25561868-25561887 | Msa0725750:CDS | 40.0% | |
| TCAGATGTTAAGGAAGTAGC+AGG | - | chr5_1:25561878-25561897 | Msa0725750:CDS | 40.0% | |
| CAGATGTTAAGGAAGTAGCA+GGG | - | chr5_1:25561879-25561898 | Msa0725750:CDS | 40.0% | |
| GACTACATTATAGTTGGAGG+AGG | - | chr5_1:25561911-25561930 | Msa0725750:CDS | 40.0% | |
| TCTGATAGAGTAGCTGCTAA+AGG | + | chr5_1:25561950-25561969 | None:intergenic | 40.0% | |
| ! | GTGCTACTAATAGAAAGAGG+TGG | - | chr5_1:25561980-25561999 | Msa0725750:CDS | 40.0% |
| AATGTGAGAGGAAGAGTTCT+TGG | - | chr5_1:25562121-25562140 | Msa0725750:CDS | 40.0% | |
| TGCCATGGTGTGAGAAAAAA+GGG | + | chr5_1:25562274-25562293 | None:intergenic | 40.0% | |
| TTGCCATGGTGTGAGAAAAA+AGG | + | chr5_1:25562275-25562294 | None:intergenic | 40.0% | |
| AATTCAGCAACAGATTGCCA+TGG | + | chr5_1:25562289-25562308 | None:intergenic | 40.0% | |
| GCCCTACAATGGTTATAGTT+TGG | - | chr5_1:25562333-25562352 | Msa0725750:intron | 40.0% | |
| ACAAGAACTGTGAGGTTCTT+TGG | + | chr5_1:25562448-25562467 | None:intergenic | 40.0% | |
| AAAGATGATGCTCTTCACTG+TGG | + | chr5_1:25562476-25562495 | None:intergenic | 40.0% | |
| GAAGATGAATGCCACCATTA+TGG | + | chr5_1:25562619-25562638 | None:intergenic | 40.0% | |
| CGACAGGATCCTTTAAACTA+TGG | + | chr5_1:25562641-25562660 | None:intergenic | 40.0% | |
| CACAATGTTAAAACTACGGC+CGG | + | chr5_1:25562745-25562764 | None:intergenic | 40.0% | |
| ! | TCTGAAATTGCATTCGCAAC+GGG | + | chr5_1:25562804-25562823 | None:intergenic | 40.0% |
| CAAGGTGAATGCCACAATTA+TGG | + | chr5_1:25562857-25562876 | None:intergenic | 40.0% | |
| ACAGGACCCTCTAAATTGTA+TGG | + | chr5_1:25562929-25562948 | None:intergenic | 40.0% | |
| TTTCATTCTTGTCACCTGAG+TGG | + | chr5_1:25563198-25563217 | None:intergenic | 40.0% | |
| CAGGTGACAAGAATGAAACA+AGG | - | chr5_1:25563200-25563219 | Msa0725750:CDS | 40.0% | |
| CAAGAATGAAACAAGGGCTA+AGG | - | chr5_1:25563207-25563226 | Msa0725750:CDS | 40.0% | |
| CCAAACCATTCAACTTCAAG+GGG | - | chr5_1:25563292-25563311 | Msa0725750:CDS | 40.0% | |
| GGTGATGTCATATTATCAGC+AGG | - | chr5_1:25563313-25563332 | Msa0725750:CDS | 40.0% | |
| CCACTTAGAAGCAAAAGTTG+AGG | + | chr5_1:25563352-25563371 | None:intergenic | 40.0% | |
| ! | CCTCAACTTTTGCTTCTAAG+TGG | - | chr5_1:25563349-25563368 | Msa0725750:CDS | 40.0% |
| ! | CTTTTGCTTCTAAGTGGCAT+TGG | - | chr5_1:25563355-25563374 | Msa0725750:CDS | 40.0% |
| !! | GAAATGAAACAGGTTGGTCA+AGG | - | chr5_1:25563421-25563440 | Msa0725750:CDS | 40.0% |
| ! | GGATCAGGAAGTCTATTTTC+TGG | + | chr5_1:25563490-25563509 | None:intergenic | 40.0% |
| TCTGTTATGCCTGCAATTTG+TGG | + | chr5_1:25563514-25563533 | None:intergenic | 40.0% | |
| !! | TCAAGGTACCCTTTTGAAAG+AGG | + | chr5_1:25563622-25563641 | None:intergenic | 40.0% |
| GATCATTGTTGCTCAGTTCA+AGG | + | chr5_1:25563639-25563658 | None:intergenic | 40.0% | |
| AACTGAGCAACAATGATCCA+AGG | - | chr5_1:25563641-25563660 | Msa0725750:CDS | 40.0% | |
| TGAGTCACAGCAAAGCAAAT+TGG | - | chr5_1:25563783-25563802 | Msa0725750:intron | 40.0% | |
| TATCATGGTGGTTGCAATGT+TGG | - | chr5_1:25563865-25563884 | Msa0725750:intron | 40.0% | |
| !! | TCAACTTTTTCTGAGTCACC+AGG | - | chr5_1:25563952-25563971 | Msa0725750:intron | 40.0% |
| ! | AGCATCAAAAGTGTAGCCAT+AGG | + | chr5_1:25563985-25564004 | None:intergenic | 40.0% |
| ! | ATGGCTACACTTTTGATGCT+AGG | - | chr5_1:25563985-25564004 | Msa0725750:intron | 40.0% |
| ! | CTACACTTTTGATGCTAGGA+AGG | - | chr5_1:25563989-25564008 | Msa0725750:intron | 40.0% |
| !! | TTGATGCTAGGAAGGTATCA+AGG | - | chr5_1:25563997-25564016 | Msa0725750:intron | 40.0% |
| CAGATTCTGTTTCCCTTTGT+TGG | + | chr5_1:25564035-25564054 | None:intergenic | 40.0% | |
| TCTTTCCCTTCAGAACCTCA+AGG | - | chr5_1:25561450-25561469 | Msa0725750:exon | 45.0% | |
| !! | GCATACCTTGAGGTTCTGAA+GGG | + | chr5_1:25561458-25561477 | None:intergenic | 45.0% |
| ! | ATAGTTGGAGGAGGTACATG+TGG | - | chr5_1:25561920-25561939 | Msa0725750:CDS | 45.0% |
| GAAAGAGGTGGTTCACCATA+TGG | - | chr5_1:25561992-25562011 | Msa0725750:CDS | 45.0% | |
| ! | GATGGTGTTAGCAATGTGAG+AGG | - | chr5_1:25562109-25562128 | Msa0725750:CDS | 45.0% |
| GGTGGCTCATCAGCTATAAA+TGG | - | chr5_1:25562142-25562161 | Msa0725750:CDS | 45.0% | |
| GGCTCATCAGCTATAAATGG+TGG | - | chr5_1:25562145-25562164 | Msa0725750:CDS | 45.0% | |
| CATGGTGTGAGAAAAAAGGG+AGG | + | chr5_1:25562271-25562290 | None:intergenic | 45.0% | |
| !!! | CTCCCTTTTTTCTCACACCA+TGG | - | chr5_1:25562269-25562288 | Msa0725750:CDS | 45.0% |
| ! | ACGGGAATTTTGCCCTACAA+TGG | - | chr5_1:25562322-25562341 | Msa0725750:CDS | 45.0% |
| ATCAGGGGAACCAAGATTTC+TGG | - | chr5_1:25562361-25562380 | Msa0725750:intron | 45.0% | |
| TCAGGGGAACCAAGATTTCT+GGG | - | chr5_1:25562362-25562381 | Msa0725750:intron | 45.0% | |
| GAACACACTCCCAGAAATCT+TGG | + | chr5_1:25562374-25562393 | None:intergenic | 45.0% | |
| ! | ATTTCTGGGAGTGTGTTCGA+TGG | - | chr5_1:25562376-25562395 | Msa0725750:intron | 45.0% |
| ! | TTTCTGGGAGTGTGTTCGAT+GGG | - | chr5_1:25562377-25562396 | Msa0725750:intron | 45.0% |
| TACCTCAGCTGATCTTCTTG+AGG | - | chr5_1:25562414-25562433 | Msa0725750:intron | 45.0% | |
| TGGCATTCACAAGAACTGTG+AGG | + | chr5_1:25562456-25562475 | None:intergenic | 45.0% | |
| TGGTTGCACTGCAACCATAA+TGG | - | chr5_1:25562602-25562621 | Msa0725750:intron | 45.0% | |
| TTGCACTGCAACCATAATGG+TGG | - | chr5_1:25562605-25562624 | Msa0725750:intron | 45.0% | |
| TGGAAGATGATGCGACAATC+AGG | + | chr5_1:25562684-25562703 | None:intergenic | 45.0% | |
| ATGTTAAAACTACGGCCGGT+CGG | + | chr5_1:25562741-25562760 | None:intergenic | 45.0% | |
| !!! | CGGCCGTAGTTTTAACATTG+TGG | - | chr5_1:25562743-25562762 | Msa0725750:intron | 45.0% |
| TGCTATCGTGGCCATAATTG+TGG | - | chr5_1:25562843-25562862 | Msa0725750:intron | 45.0% | |
| CCCCTTGAAGTTGAATGGTT+TGG | + | chr5_1:25563295-25563314 | None:intergenic | 45.0% | |
| CATCACCCCTTGAAGTTGAA+TGG | + | chr5_1:25563300-25563319 | None:intergenic | 45.0% | |
| GTTATGCCTGCAATTTGTGG+TGG | + | chr5_1:25563511-25563530 | None:intergenic | 45.0% | |
| TGGTTGCAATGTTGGAACAG+TGG | - | chr5_1:25563873-25563892 | Msa0725750:intron | 45.0% | |
| GTCACCAGGTACTAATCCTA+TGG | - | chr5_1:25563966-25563985 | Msa0725750:intron | 45.0% | |
| ! | GTAGCCATAGGATTAGTACC+TGG | + | chr5_1:25563973-25563992 | None:intergenic | 45.0% |
| ! | GGCATACCTTGAGGTTCTGA+AGG | + | chr5_1:25561459-25561478 | None:intergenic | 50.0% |
| GTGAGAGGAAGAGTTCTTGG+TGG | - | chr5_1:25562124-25562143 | Msa0725750:CDS | 50.0% | |
| AGCCTCAAGAAGATCAGCTG+AGG | + | chr5_1:25562419-25562438 | None:intergenic | 50.0% | |
| TCAGCTGATCTTCTTGAGGC+TGG | - | chr5_1:25562418-25562437 | Msa0725750:intron | 50.0% | |
| GATAGCATTGCATTCACGCC+AGG | + | chr5_1:25562830-25562849 | None:intergenic | 50.0% | |
| GCGTGAATGCAATGCTATCG+TGG | - | chr5_1:25562831-25562850 | Msa0725750:intron | 50.0% | |
| !! | CCTGCAATTTGTGGTGGATC+AGG | + | chr5_1:25563505-25563524 | None:intergenic | 50.0% |
| CCTGATCCACCACAAATTGC+AGG | - | chr5_1:25563502-25563521 | Msa0725750:CDS | 50.0% | |
| TTCACAGCAGGGTTAAGCCT+TGG | + | chr5_1:25563661-25563680 | None:intergenic | 50.0% | |
| ! | TGCTTTGCTGTGACTCACCA+AGG | + | chr5_1:25563780-25563799 | None:intergenic | 50.0% |
| ! | GGGAGTGTGTTCGATGGGTT+TGG | - | chr5_1:25562382-25562401 | Msa0725750:intron | 55.0% |
| AATCGCACTGCATTCGCGAC+AGG | + | chr5_1:25562657-25562676 | None:intergenic | 55.0% | |
| AGGGTCCTGTCACAACTGTG+AGG | - | chr5_1:25562712-25562731 | Msa0725750:intron | 55.0% | |
| GGATGCCTCACAGTTGTGAC+AGG | + | chr5_1:25562720-25562739 | None:intergenic | 55.0% | |
| ! | ACAACTGTGAGGCATCCGAC+CGG | - | chr5_1:25562723-25562742 | Msa0725750:intron | 55.0% |
| AGCTGCATTGCGCTCGTGAC+AGG | + | chr5_1:25562947-25562966 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 25561292 | 25564255 | 25561292 | ID=Msa0725750;Name=Msa0725750 |
| chr5_1 | mRNA | 25561292 | 25564255 | 25561292 | ID=Msa0725750-mRNA-1;Parent=Msa0725750;Name=Msa0725750-mRNA-1;_AED=0.03;_eAED=0.03;_QI=74|1|1|1|0.5|1|3|175|544 |
| chr5_1 | exon | 25561292 | 25562344 | 25561292 | ID=Msa0725750-mRNA-1:exon:9235;Parent=Msa0725750-mRNA-1 |
| chr5_1 | exon | 25563042 | 25563692 | 25563042 | ID=Msa0725750-mRNA-1:exon:9234;Parent=Msa0725750-mRNA-1 |
| chr5_1 | exon | 25564076 | 25564255 | 25564076 | ID=Msa0725750-mRNA-1:exon:9233;Parent=Msa0725750-mRNA-1 |
| chr5_1 | five_prime_UTR | 25564182 | 25564255 | 25564182 | ID=Msa0725750-mRNA-1:five_prime_utr;Parent=Msa0725750-mRNA-1 |
| chr5_1 | CDS | 25564076 | 25564181 | 25564076 | ID=Msa0725750-mRNA-1:cds;Parent=Msa0725750-mRNA-1 |
| chr5_1 | CDS | 25563042 | 25563692 | 25563042 | ID=Msa0725750-mRNA-1:cds;Parent=Msa0725750-mRNA-1 |
| chr5_1 | CDS | 25561467 | 25562344 | 25561467 | ID=Msa0725750-mRNA-1:cds;Parent=Msa0725750-mRNA-1 |
| chr5_1 | three_prime_UTR | 25561292 | 25561466 | 25561292 | ID=Msa0725750-mRNA-1:three_prime_utr;Parent=Msa0725750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
