Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556640 | XP_024637097.1 | 88.263 | 213 | 2 | 2 | 1 | 190 | 1 | 213 | 9.21e-129 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556640 | G7JNM4 | 87.442 | 215 | 2 | 3 | 1 | 190 | 25 | 239 | 1.38e-127 | 368 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0556640 | 0.807798 | 4.239552e-50 | -8.615850e-47 |
| Msa0002580 | Msa0556640 | 0.829445 | 5.126811e-55 | -8.615850e-47 |
| Msa0005890 | Msa0556640 | 0.802918 | 4.465384e-49 | -8.615850e-47 |
| Msa0025160 | Msa0556640 | 0.805347 | 1.394511e-49 | -8.615850e-47 |
| Msa0027280 | Msa0556640 | 0.810800 | 9.626367e-51 | -8.615850e-47 |
| Msa0048510 | Msa0556640 | 0.802989 | 4.318142e-49 | -8.615850e-47 |
| Msa0050790 | Msa0556640 | 0.802207 | 6.259640e-49 | -8.615850e-47 |
| Msa0054690 | Msa0556640 | 0.815605 | 8.485442e-52 | -8.615850e-47 |
| Msa0077340 | Msa0556640 | 0.801924 | 7.158252e-49 | -8.615850e-47 |
| Msa0125360 | Msa0556640 | 0.804300 | 2.308519e-49 | -8.615850e-47 |
| Msa0136650 | Msa0556640 | 0.801980 | 6.970618e-49 | -8.615850e-47 |
| Msa0200050 | Msa0556640 | 0.812071 | 5.097406e-51 | -8.615850e-47 |
| Msa0225860 | Msa0556640 | 0.801692 | 7.988062e-49 | -8.615850e-47 |
| Msa0369790 | Msa0556640 | 0.814387 | 1.581052e-51 | -8.615850e-47 |
| Msa0428370 | Msa0556640 | 0.811433 | 7.019621e-51 | -8.615850e-47 |
| Msa0430260 | Msa0556640 | 0.807473 | 4.967857e-50 | -8.615850e-47 |
| Msa0436910 | Msa0556640 | 0.823490 | 1.347052e-53 | -8.615850e-47 |
| Msa0464000 | Msa0556640 | 0.810933 | 9.008978e-51 | -8.615850e-47 |
| Msa0472950 | Msa0556640 | 0.805118 | 1.557999e-49 | -8.615850e-47 |
| Msa0474730 | Msa0556640 | 0.812990 | 3.210617e-51 | -8.615850e-47 |
| Msa0247890 | Msa0556640 | 0.815995 | 6.947726e-52 | -8.615850e-47 |
| Msa0298470 | Msa0556640 | 0.812358 | 4.413906e-51 | -8.615850e-47 |
| Msa0340500 | Msa0556640 | 0.810112 | 1.355421e-50 | -8.615850e-47 |
| Msa0500380 | Msa0556640 | 0.802292 | 6.011638e-49 | -8.615850e-47 |
| Msa0509550 | Msa0556640 | 0.811868 | 5.645948e-51 | -8.615850e-47 |
| Msa0520990 | Msa0556640 | 0.802761 | 4.811266e-49 | -8.615850e-47 |
| Msa0529030 | Msa0556640 | 0.823312 | 1.481879e-53 | -8.615850e-47 |
| Msa0556640 | Msa0557460 | 0.814683 | 1.360058e-51 | -8.615850e-47 |
| Msa0556640 | Msa0567170 | 0.822643 | 2.122350e-53 | -8.615850e-47 |
| Msa0556640 | Msa0580370 | 0.826384 | 2.793655e-54 | -8.615850e-47 |
| Msa0556640 | Msa0587620 | 0.802977 | 4.343288e-49 | -8.615850e-47 |
| Msa0556640 | Msa0612060 | 0.838462 | 2.834999e-57 | -8.615850e-47 |
| Msa0556640 | Msa0658640 | 0.802574 | 5.259342e-49 | -8.615850e-47 |
| Msa0556640 | Msa0735780 | 0.821599 | 3.705559e-53 | -8.615850e-47 |
| Msa0556640 | Msa0773630 | 0.817875 | 2.627938e-52 | -8.615850e-47 |
| Msa0556640 | Msa0780910 | 0.803933 | 2.751177e-49 | -8.615850e-47 |
| Msa0556640 | Msa0795870 | 0.829493 | 4.991737e-55 | -8.615850e-47 |
| Msa0556640 | Msa0824450 | 0.830519 | 2.805488e-55 | -8.615850e-47 |
| Msa0556640 | Msa0833650 | 0.819523 | 1.110918e-52 | -8.615850e-47 |
| Msa0556640 | Msa0855230 | 0.806000 | 1.017298e-49 | -8.615850e-47 |
| Msa0556640 | Msa0894790 | 0.805911 | 1.062069e-49 | -8.615850e-47 |
| Msa0556640 | Msa1042160 | 0.815526 | 8.837784e-52 | -8.615850e-47 |
| Msa0556640 | Msa1042190 | 0.818671 | 1.735455e-52 | -8.615850e-47 |
| Msa0556640 | Msa1072940 | 0.808172 | 3.529597e-50 | -8.615850e-47 |
| Msa0556640 | Msa1081390 | 0.810503 | 1.115816e-50 | -8.615850e-47 |
| Msa0556640 | Msa1116220 | 0.815184 | 1.052700e-51 | -8.615850e-47 |
| Msa0556640 | Msa1132840 | 0.822428 | 2.381727e-53 | -8.615850e-47 |
| Msa0556640 | Msa1167470 | 0.810663 | 1.030740e-50 | -8.615850e-47 |
| Msa0556640 | Msa1200890 | 0.804085 | 2.558068e-49 | -8.615850e-47 |
| Msa0556640 | Msa1226520 | 0.807919 | 3.994871e-50 | -8.615850e-47 |
| Msa0556640 | Msa1265650 | 0.829017 | 6.511285e-55 | -8.615850e-47 |
| Msa0556640 | Msa1303560 | 0.819628 | 1.051166e-52 | -8.615850e-47 |
| Msa0556640 | Msa1303650 | 0.819834 | 9.431171e-53 | -8.615850e-47 |
| Msa0556640 | Msa1343170 | 0.804589 | 2.008731e-49 | -8.615850e-47 |
| Msa0556640 | Msa1343180 | 0.811329 | 7.393746e-51 | -8.615850e-47 |
| Msa0556640 | Msa1359690 | 0.807276 | 5.471773e-50 | -8.615850e-47 |
| Msa0556640 | Msa1372040 | 0.815952 | 7.102999e-52 | -8.615850e-47 |
| Msa0556640 | Msa1405460 | 0.819782 | 9.695007e-53 | -8.615850e-47 |
| Msa0556640 | Msa1409410 | 0.816403 | 5.629676e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556640 | MtrunA17_Chr4g0045611 | 87.442 | 215 | 2 | 3 | 1 | 190 | 1 | 215 | 1.21e-130 | 365 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556640 | AT3G59680.2 | 48.768 | 203 | 74 | 8 | 12 | 187 | 24 | 223 | 3.06e-51 | 165 |
| Msa0556640 | AT3G59680.1 | 47.668 | 193 | 72 | 7 | 22 | 187 | 5 | 195 | 4.02e-47 | 153 |
Find 35 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTAATAATTCAACTTTA+TGG | 0.128033 | 4_1:+54899523 | Msa0556640:CDS |
| ATTTCTCAAAATCTCATTAT+AGG | 0.182353 | 4_1:-54899676 | None:intergenic |
| GTAGGAACTTGAGGGGATTT+TGG | 0.233877 | 4_1:-54899555 | None:intergenic |
| CTTGTATTTGAATCATTCTT+TGG | 0.242496 | 4_1:-54898829 | None:intergenic |
| GAAATCAAATGGAAGTTATT+AGG | 0.286022 | 4_1:+54899898 | Msa0556640:CDS |
| GGATAACTATTACTTCTTCT+AGG | 0.341829 | 4_1:-54899708 | None:intergenic |
| ATGGTTCTTGCAGATGATAT+TGG | 0.388098 | 4_1:+54899972 | Msa0556640:CDS |
| CAATGGATGTAACTAGCTTA+TGG | 0.393769 | 4_1:+54899469 | Msa0556640:CDS |
| ATCTCATTATAGGAATAAAT+AGG | 0.401100 | 4_1:-54899666 | None:intergenic |
| GCCTAGTCCTCTTAGTAGAA+TGG | 0.460019 | 4_1:+54899953 | Msa0556640:CDS |
| AAATGGAAGTTATTAGGAAA+AGG | 0.469401 | 4_1:+54899904 | Msa0556640:CDS |
| CCAAAGCAAAAGATAGATGT+TGG | 0.494796 | 4_1:+54898650 | Msa0556640:five_prime_UTR |
| TCCATTGCTCTTTGATACCA+TGG | 0.496795 | 4_1:-54899453 | None:intergenic |
| AAATAATTCAAAAGGAATCA+TGG | 0.496831 | 4_1:+54898624 | Msa0556640:five_prime_UTR |
| AATTAGAAGAAGAAATCAAA+TGG | 0.496957 | 4_1:+54899887 | Msa0556640:CDS |
| GCAAGAACCATTCTACTAAG+AGG | 0.510476 | 4_1:-54899960 | None:intergenic |
| CAAAGCAAAAGATAGATGTT+GGG | 0.516457 | 4_1:+54898651 | Msa0556640:five_prime_UTR |
| TAAAGTTGAATTATTAGATG+TGG | 0.519784 | 4_1:-54899520 | None:intergenic |
| TGAAAATATGAAAGAGGTGG+AGG | 0.520559 | 4_1:-54898784 | None:intergenic |
| ACAATAAAGAATGACAGAAA+AGG | 0.525503 | 4_1:+54898676 | Msa0556640:five_prime_UTR |
| TCATGTGATGTTGTTTGCAA+TGG | 0.526646 | 4_1:-54899744 | None:intergenic |
| TAATAATTCAACTTTATGGA+AGG | 0.536189 | 4_1:+54899527 | Msa0556640:CDS |
| CAAAGAATGATTCAAATACA+AGG | 0.543307 | 4_1:+54898830 | Msa0556640:CDS |
| GAAAACTGAAAATATGAAAG+AGG | 0.553021 | 4_1:-54898790 | None:intergenic |
| TTTCAAGATGCAGGAAGCCA+TGG | 0.559134 | 4_1:+54899436 | Msa0556640:intron |
| GCCATGGTATCAAAGAGCAA+TGG | 0.567750 | 4_1:+54899452 | Msa0556640:CDS |
| AAATTAGAACTCATAGTGCT+AGG | 0.568662 | 4_1:+54899766 | Msa0556640:CDS |
| AGTGCTAGGCTTAGCACAGA+GGG | 0.581749 | 4_1:+54899780 | Msa0556640:CDS |
| AACTGAAAATATGAAAGAGG+TGG | 0.590887 | 4_1:-54898787 | None:intergenic |
| ACTTTGTGTAGGAACTTGAG+GGG | 0.629081 | 4_1:-54899562 | None:intergenic |
| TAACTATTACTTCTTCTAGG+TGG | 0.635383 | 4_1:-54899705 | None:intergenic |
| ACCATTCTACTAAGAGGACT+AGG | 0.640553 | 4_1:-54899954 | None:intergenic |
| TTAGGAAAAGGAGTGTGATG+AGG | 0.650109 | 4_1:+54899916 | Msa0556640:CDS |
| TTAGCACAGAGGGATCAAGA+AGG | 0.686930 | 4_1:+54899790 | Msa0556640:CDS |
| TAGTGCTAGGCTTAGCACAG+AGG | 0.719730 | 4_1:+54899779 | Msa0556640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAAAAATAATTCAAA+AGG | + | chr4_1:54898616-54898635 | Msa0556640:five_prime_UTR | 10.0% |
| !! | ACAAAAAAAAATAATTCAAA+AGG | + | chr4_1:54898616-54898635 | Msa0556640:five_prime_UTR | 10.0% |
| !! | GATTATAAAATCTGAAAAAA+TGG | + | chr4_1:54900076-54900095 | Msa0556640:intron | 15.0% |
| !!! | TTATATAATCTGAAATTCAT+AGG | + | chr4_1:54900139-54900158 | Msa0556640:intron | 15.0% |
| !!! | TATATAATCTGAAATTCATA+GGG | + | chr4_1:54900140-54900159 | Msa0556640:intron | 15.0% |
| !!! | TTTTTTTTTTTTACAATCTG+TGG | + | chr4_1:54900267-54900286 | Msa0556640:intron | 15.0% |
| !!! | TTTTTTTTTTTACAATCTGT+GGG | + | chr4_1:54900268-54900287 | Msa0556640:intron | 15.0% |
| !! | GATTATAAAATCTGAAAAAA+TGG | + | chr4_1:54900076-54900095 | Msa0556640:intron | 15.0% |
| !!! | TTATATAATCTGAAATTCAT+AGG | + | chr4_1:54900139-54900158 | Msa0556640:intron | 15.0% |
| !!! | TATATAATCTGAAATTCATA+GGG | + | chr4_1:54900140-54900159 | Msa0556640:intron | 15.0% |
| !!! | TTTTTTTTTTTTACAATCTG+TGG | + | chr4_1:54900267-54900286 | Msa0556640:intron | 15.0% |
| !!! | TTTTTTTTTTTACAATCTGT+GGG | + | chr4_1:54900268-54900287 | Msa0556640:intron | 15.0% |
| !! | AAATAATTCAAAAGGAATCA+TGG | + | chr4_1:54898624-54898643 | Msa0556640:five_prime_UTR | 20.0% |
| !!! | GAAAGTGTTAAATTTAGTTT+AGG | - | chr4_1:54899060-54899079 | None:intergenic | 20.0% |
| !!! | TTTATAGGTTTTTTCAACAT+TGG | + | chr4_1:54899233-54899252 | Msa0556640:intron | 20.0% |
| !! | TAAAGTTGAATTATTAGATG+TGG | - | chr4_1:54899523-54899542 | None:intergenic | 20.0% |
| !! | CATCTAATAATTCAACTTTA+TGG | + | chr4_1:54899523-54899542 | Msa0556640:CDS | 20.0% |
| !! | TAATAATTCAACTTTATGGA+AGG | + | chr4_1:54899527-54899546 | Msa0556640:CDS | 20.0% |
| !! | ATCTCATTATAGGAATAAAT+AGG | - | chr4_1:54899669-54899688 | None:intergenic | 20.0% |
| !! | ATTTCTCAAAATCTCATTAT+AGG | - | chr4_1:54899679-54899698 | None:intergenic | 20.0% |
| !!! | AATGAAAAGATTTGTTATTG+AGG | + | chr4_1:54899848-54899867 | Msa0556640:intron | 20.0% |
| !! | AATTAGAAGAAGAAATCAAA+TGG | + | chr4_1:54899887-54899906 | Msa0556640:CDS | 20.0% |
| !!! | TCAGATTTTATAATCTGAAT+AGG | - | chr4_1:54900071-54900090 | None:intergenic | 20.0% |
| !! | TGTAATGTCTAAATCTAAAT+TGG | + | chr4_1:54900198-54900217 | Msa0556640:intron | 20.0% |
| !!! | TTCGAACAATTTATGTTTTA+TGG | + | chr4_1:54900320-54900339 | Msa0556640:intron | 20.0% |
| !! | GTTTCTATAAAAACAAAAGA+AGG | - | chr4_1:54900414-54900433 | None:intergenic | 20.0% |
| !! | AAATAATTCAAAAGGAATCA+TGG | + | chr4_1:54898624-54898643 | Msa0556640:five_prime_UTR | 20.0% |
| !!! | GAAAGTGTTAAATTTAGTTT+AGG | - | chr4_1:54899060-54899079 | None:intergenic | 20.0% |
| !!! | TTTATAGGTTTTTTCAACAT+TGG | + | chr4_1:54899233-54899252 | Msa0556640:intron | 20.0% |
| !! | TAAAGTTGAATTATTAGATG+TGG | - | chr4_1:54899523-54899542 | None:intergenic | 20.0% |
| !! | CATCTAATAATTCAACTTTA+TGG | + | chr4_1:54899523-54899542 | Msa0556640:CDS | 20.0% |
| !! | TAATAATTCAACTTTATGGA+AGG | + | chr4_1:54899527-54899546 | Msa0556640:CDS | 20.0% |
| !! | ATCTCATTATAGGAATAAAT+AGG | - | chr4_1:54899669-54899688 | None:intergenic | 20.0% |
| !! | ATTTCTCAAAATCTCATTAT+AGG | - | chr4_1:54899679-54899698 | None:intergenic | 20.0% |
| !!! | AATGAAAAGATTTGTTATTG+AGG | + | chr4_1:54899848-54899867 | Msa0556640:intron | 20.0% |
| !! | AATTAGAAGAAGAAATCAAA+TGG | + | chr4_1:54899887-54899906 | Msa0556640:CDS | 20.0% |
| !!! | TCAGATTTTATAATCTGAAT+AGG | - | chr4_1:54900071-54900090 | None:intergenic | 20.0% |
| !! | TGTAATGTCTAAATCTAAAT+TGG | + | chr4_1:54900198-54900217 | Msa0556640:intron | 20.0% |
| !!! | TTCGAACAATTTATGTTTTA+TGG | + | chr4_1:54900320-54900339 | Msa0556640:intron | 20.0% |
| !! | GTTTCTATAAAAACAAAAGA+AGG | - | chr4_1:54900414-54900433 | None:intergenic | 20.0% |
| ! | ACAATAAAGAATGACAGAAA+AGG | + | chr4_1:54898676-54898695 | Msa0556640:five_prime_UTR | 25.0% |
| ! | GAAAACTGAAAATATGAAAG+AGG | - | chr4_1:54898793-54898812 | None:intergenic | 25.0% |
| ! | CTTGTATTTGAATCATTCTT+TGG | - | chr4_1:54898832-54898851 | None:intergenic | 25.0% |
| ! | CAAAGAATGATTCAAATACA+AGG | + | chr4_1:54898830-54898849 | Msa0556640:CDS | 25.0% |
| ! | TAAGCTAAAATTCTCAAGAA+GGG | - | chr4_1:54898908-54898927 | None:intergenic | 25.0% |
| ! | TTAAGCTAAAATTCTCAAGA+AGG | - | chr4_1:54898909-54898928 | None:intergenic | 25.0% |
| !!! | AGAATTTTAGCTTAATGCAT+TGG | + | chr4_1:54898914-54898933 | Msa0556640:intron | 25.0% |
| ! | TAGTGTGATCATCTATAATA+AGG | + | chr4_1:54898975-54898994 | Msa0556640:intron | 25.0% |
| ! | AGTGTGATCATCTATAATAA+GGG | + | chr4_1:54898976-54898995 | Msa0556640:intron | 25.0% |
| ! | TATGAAGAAGTTAATGCTAT+TGG | - | chr4_1:54899114-54899133 | None:intergenic | 25.0% |
| !!! | TTCAACATTGGTTCTAAATT+TGG | + | chr4_1:54899245-54899264 | Msa0556640:intron | 25.0% |
| !! | TAAATTTGGAATTTCCATTC+TGG | + | chr4_1:54899259-54899278 | Msa0556640:intron | 25.0% |
| ! | AATTTATAACTATGCCAGAA+TGG | - | chr4_1:54899276-54899295 | None:intergenic | 25.0% |
| !!! | TTTTAGAACCAATTATGCAA+GGG | - | chr4_1:54899362-54899381 | None:intergenic | 25.0% |
| !!! | ATTTTAGAACCAATTATGCA+AGG | - | chr4_1:54899363-54899382 | None:intergenic | 25.0% |
| ! | TTCAATTTATTTCAAGATGC+AGG | + | chr4_1:54899427-54899446 | Msa0556640:intron | 25.0% |
| !! | TTGTTATTAGAACTTTGTGT+AGG | - | chr4_1:54899576-54899595 | None:intergenic | 25.0% |
| ! | AAGAAAATGTACATCTCTAA+AGG | + | chr4_1:54899608-54899627 | Msa0556640:intron | 25.0% |
| !!! | TAATGAGATTTTGAGAAATG+AGG | + | chr4_1:54899680-54899699 | Msa0556640:CDS | 25.0% |
| ! | GAAATCAAATGGAAGTTATT+AGG | + | chr4_1:54899898-54899917 | Msa0556640:CDS | 25.0% |
| ! | AAATGGAAGTTATTAGGAAA+AGG | + | chr4_1:54899904-54899923 | Msa0556640:CDS | 25.0% |
| ! | AGAAATTCTCTTACAAGAAT+GGG | - | chr4_1:54900021-54900040 | None:intergenic | 25.0% |
| ! | AAGAAATTCTCTTACAAGAA+TGG | - | chr4_1:54900022-54900041 | None:intergenic | 25.0% |
| ! | AATCTGAAAAAATGGTACTT+TGG | + | chr4_1:54900084-54900103 | Msa0556640:intron | 25.0% |
| ! | AAACTTAGCAAACAAGATTA+TGG | - | chr4_1:54900248-54900267 | None:intergenic | 25.0% |
| ! | ACAATAAAGAATGACAGAAA+AGG | + | chr4_1:54898676-54898695 | Msa0556640:five_prime_UTR | 25.0% |
| ! | GAAAACTGAAAATATGAAAG+AGG | - | chr4_1:54898793-54898812 | None:intergenic | 25.0% |
| ! | CTTGTATTTGAATCATTCTT+TGG | - | chr4_1:54898832-54898851 | None:intergenic | 25.0% |
| ! | CAAAGAATGATTCAAATACA+AGG | + | chr4_1:54898830-54898849 | Msa0556640:CDS | 25.0% |
| ! | TAAGCTAAAATTCTCAAGAA+GGG | - | chr4_1:54898908-54898927 | None:intergenic | 25.0% |
| ! | TTAAGCTAAAATTCTCAAGA+AGG | - | chr4_1:54898909-54898928 | None:intergenic | 25.0% |
| !!! | AGAATTTTAGCTTAATGCAT+TGG | + | chr4_1:54898914-54898933 | Msa0556640:intron | 25.0% |
| ! | TAGTGTGATCATCTATAATA+AGG | + | chr4_1:54898975-54898994 | Msa0556640:intron | 25.0% |
| ! | AGTGTGATCATCTATAATAA+GGG | + | chr4_1:54898976-54898995 | Msa0556640:intron | 25.0% |
| ! | TATGAAGAAGTTAATGCTAT+TGG | - | chr4_1:54899114-54899133 | None:intergenic | 25.0% |
| !!! | TTCAACATTGGTTCTAAATT+TGG | + | chr4_1:54899245-54899264 | Msa0556640:intron | 25.0% |
| !! | TAAATTTGGAATTTCCATTC+TGG | + | chr4_1:54899259-54899278 | Msa0556640:intron | 25.0% |
| ! | AATTTATAACTATGCCAGAA+TGG | - | chr4_1:54899276-54899295 | None:intergenic | 25.0% |
| !!! | TTTTAGAACCAATTATGCAA+GGG | - | chr4_1:54899362-54899381 | None:intergenic | 25.0% |
| !!! | ATTTTAGAACCAATTATGCA+AGG | - | chr4_1:54899363-54899382 | None:intergenic | 25.0% |
| ! | TTCAATTTATTTCAAGATGC+AGG | + | chr4_1:54899427-54899446 | Msa0556640:intron | 25.0% |
| !! | TTGTTATTAGAACTTTGTGT+AGG | - | chr4_1:54899576-54899595 | None:intergenic | 25.0% |
| ! | AAGAAAATGTACATCTCTAA+AGG | + | chr4_1:54899608-54899627 | Msa0556640:intron | 25.0% |
| !!! | TAATGAGATTTTGAGAAATG+AGG | + | chr4_1:54899680-54899699 | Msa0556640:CDS | 25.0% |
| ! | GAAATCAAATGGAAGTTATT+AGG | + | chr4_1:54899898-54899917 | Msa0556640:CDS | 25.0% |
| ! | AAATGGAAGTTATTAGGAAA+AGG | + | chr4_1:54899904-54899923 | Msa0556640:CDS | 25.0% |
| ! | AGAAATTCTCTTACAAGAAT+GGG | - | chr4_1:54900021-54900040 | None:intergenic | 25.0% |
| ! | AAGAAATTCTCTTACAAGAA+TGG | - | chr4_1:54900022-54900041 | None:intergenic | 25.0% |
| ! | AATCTGAAAAAATGGTACTT+TGG | + | chr4_1:54900084-54900103 | Msa0556640:intron | 25.0% |
| ! | AAACTTAGCAAACAAGATTA+TGG | - | chr4_1:54900248-54900267 | None:intergenic | 25.0% |
| CAAAGCAAAAGATAGATGTT+GGG | + | chr4_1:54898651-54898670 | Msa0556640:five_prime_UTR | 30.0% | |
| AACTGAAAATATGAAAGAGG+TGG | - | chr4_1:54898790-54898809 | None:intergenic | 30.0% | |
| ! | AAATTTAGTTTAGGCCTTAG+AGG | - | chr4_1:54899051-54899070 | None:intergenic | 30.0% |
| TTCCCATGTTAGTAAAGAAT+TGG | + | chr4_1:54899077-54899096 | Msa0556640:intron | 30.0% | |
| TCCCATGTTAGTAAAGAATT+GGG | + | chr4_1:54899078-54899097 | Msa0556640:intron | 30.0% | |
| ACCCAATTCTTTACTAACAT+GGG | - | chr4_1:54899082-54899101 | None:intergenic | 30.0% | |
| AACCCAATTCTTTACTAACA+TGG | - | chr4_1:54899083-54899102 | None:intergenic | 30.0% | |
| ! | TTTTGACCAAATCAATTCTC+TGG | + | chr4_1:54899201-54899220 | Msa0556640:intron | 30.0% |
| GTTGAAAAAACCTATAAAGC+AGG | - | chr4_1:54899231-54899250 | None:intergenic | 30.0% | |
| ! | ATGATTTGTGTCTTGTAACA+AGG | - | chr4_1:54899307-54899326 | None:intergenic | 30.0% |
| TTACAAGACACAAATCATAG+AGG | + | chr4_1:54899309-54899328 | Msa0556640:intron | 30.0% | |
| ! | TTATTTTCCCCTTGCATAAT+TGG | + | chr4_1:54899351-54899370 | Msa0556640:intron | 30.0% |
| ! | TTTAGAACCAATTATGCAAG+GGG | - | chr4_1:54899361-54899380 | None:intergenic | 30.0% |
| ! | AGATGTACATTTTCTTAGCT+TGG | - | chr4_1:54899604-54899623 | None:intergenic | 30.0% |
| TAACTATTACTTCTTCTAGG+TGG | - | chr4_1:54899708-54899727 | None:intergenic | 30.0% | |
| GGATAACTATTACTTCTTCT+AGG | - | chr4_1:54899711-54899730 | None:intergenic | 30.0% | |
| AAATTAGAACTCATAGTGCT+AGG | + | chr4_1:54899766-54899785 | Msa0556640:CDS | 30.0% | |
| !! | AAGATTTGTTATTGAGGAAG+AGG | + | chr4_1:54899854-54899873 | Msa0556640:intron | 30.0% |
| ATAAATTGTGGGAAGAGAAA+TGG | + | chr4_1:54900169-54900188 | Msa0556640:intron | 30.0% | |
| AAACTAACATTGTGAAACTG+AGG | - | chr4_1:54900373-54900392 | None:intergenic | 30.0% | |
| CAAAGCAAAAGATAGATGTT+GGG | + | chr4_1:54898651-54898670 | Msa0556640:five_prime_UTR | 30.0% | |
| AACTGAAAATATGAAAGAGG+TGG | - | chr4_1:54898790-54898809 | None:intergenic | 30.0% | |
| ! | AAATTTAGTTTAGGCCTTAG+AGG | - | chr4_1:54899051-54899070 | None:intergenic | 30.0% |
| TTCCCATGTTAGTAAAGAAT+TGG | + | chr4_1:54899077-54899096 | Msa0556640:intron | 30.0% | |
| TCCCATGTTAGTAAAGAATT+GGG | + | chr4_1:54899078-54899097 | Msa0556640:intron | 30.0% | |
| ACCCAATTCTTTACTAACAT+GGG | - | chr4_1:54899082-54899101 | None:intergenic | 30.0% | |
| AACCCAATTCTTTACTAACA+TGG | - | chr4_1:54899083-54899102 | None:intergenic | 30.0% | |
| ! | TTTTGACCAAATCAATTCTC+TGG | + | chr4_1:54899201-54899220 | Msa0556640:intron | 30.0% |
| GTTGAAAAAACCTATAAAGC+AGG | - | chr4_1:54899231-54899250 | None:intergenic | 30.0% | |
| ! | ATGATTTGTGTCTTGTAACA+AGG | - | chr4_1:54899307-54899326 | None:intergenic | 30.0% |
| TTACAAGACACAAATCATAG+AGG | + | chr4_1:54899309-54899328 | Msa0556640:intron | 30.0% | |
| ! | TTATTTTCCCCTTGCATAAT+TGG | + | chr4_1:54899351-54899370 | Msa0556640:intron | 30.0% |
| ! | TTTAGAACCAATTATGCAAG+GGG | - | chr4_1:54899361-54899380 | None:intergenic | 30.0% |
| ! | AGATGTACATTTTCTTAGCT+TGG | - | chr4_1:54899604-54899623 | None:intergenic | 30.0% |
| TAACTATTACTTCTTCTAGG+TGG | - | chr4_1:54899708-54899727 | None:intergenic | 30.0% | |
| GGATAACTATTACTTCTTCT+AGG | - | chr4_1:54899711-54899730 | None:intergenic | 30.0% | |
| AAATTAGAACTCATAGTGCT+AGG | + | chr4_1:54899766-54899785 | Msa0556640:CDS | 30.0% | |
| !! | AAGATTTGTTATTGAGGAAG+AGG | + | chr4_1:54899854-54899873 | Msa0556640:intron | 30.0% |
| ATAAATTGTGGGAAGAGAAA+TGG | + | chr4_1:54900169-54900188 | Msa0556640:intron | 30.0% | |
| AAACTAACATTGTGAAACTG+AGG | - | chr4_1:54900373-54900392 | None:intergenic | 30.0% | |
| ! | CCAACATCTATCTTTTGCTT+TGG | - | chr4_1:54898653-54898672 | None:intergenic | 35.0% |
| CCAAAGCAAAAGATAGATGT+TGG | + | chr4_1:54898650-54898669 | Msa0556640:five_prime_UTR | 35.0% | |
| ! | TTTTGCTTCAGTTTGTGACT+TGG | - | chr4_1:54898716-54898735 | None:intergenic | 35.0% |
| TGAAAATATGAAAGAGGTGG+AGG | - | chr4_1:54898787-54898806 | None:intergenic | 35.0% | |
| ATGCTCACATTATTCCTCTA+AGG | + | chr4_1:54899034-54899053 | Msa0556640:intron | 35.0% | |
| TGCATTAGTACTTCTTGAGA+TGG | - | chr4_1:54899399-54899418 | None:intergenic | 35.0% | |
| ! | CAATGGATGTAACTAGCTTA+TGG | + | chr4_1:54899469-54899488 | Msa0556640:CDS | 35.0% |
| AACTTTGTGTAGGAACTTGA+GGG | - | chr4_1:54899566-54899585 | None:intergenic | 35.0% | |
| ! | AGGTAGCAACATCTTTTACA+AGG | + | chr4_1:54899628-54899647 | Msa0556640:intron | 35.0% |
| ! | GGTAGCAACATCTTTTACAA+GGG | + | chr4_1:54899629-54899648 | Msa0556640:intron | 35.0% |
| !!! | TGCAATGGTTTTGATGATCT+AGG | - | chr4_1:54899732-54899751 | None:intergenic | 35.0% |
| ! | TCATGTGATGTTGTTTGCAA+TGG | - | chr4_1:54899747-54899766 | None:intergenic | 35.0% |
| ! | AGGGATCAAGAAGGATTTTT+AGG | + | chr4_1:54899799-54899818 | Msa0556640:CDS | 35.0% |
| ! | GGGATCAAGAAGGATTTTTA+GGG | + | chr4_1:54899800-54899819 | Msa0556640:CDS | 35.0% |
| !! | GGATCAAGAAGGATTTTTAG+GGG | + | chr4_1:54899801-54899820 | Msa0556640:CDS | 35.0% |
| TGATGAGGAAAAAGAGACTT+GGG | + | chr4_1:54899931-54899950 | Msa0556640:CDS | 35.0% | |
| ATGGTTCTTGCAGATGATAT+TGG | + | chr4_1:54899972-54899991 | Msa0556640:CDS | 35.0% | |
| CTGAAAAAATGGTACTTTGG+AGG | + | chr4_1:54900087-54900106 | Msa0556640:intron | 35.0% | |
| !! | AATGGTACTTTGGAGGATTT+TGG | + | chr4_1:54900094-54900113 | Msa0556640:intron | 35.0% |
| CATAACGTTACCATAAAGCT+GGG | - | chr4_1:54900346-54900365 | None:intergenic | 35.0% | |
| ACATAACGTTACCATAAAGC+TGG | - | chr4_1:54900347-54900366 | None:intergenic | 35.0% | |
| ! | CCAACATCTATCTTTTGCTT+TGG | - | chr4_1:54898653-54898672 | None:intergenic | 35.0% |
| CCAAAGCAAAAGATAGATGT+TGG | + | chr4_1:54898650-54898669 | Msa0556640:five_prime_UTR | 35.0% | |
| ! | TTTTGCTTCAGTTTGTGACT+TGG | - | chr4_1:54898716-54898735 | None:intergenic | 35.0% |
| TGAAAATATGAAAGAGGTGG+AGG | - | chr4_1:54898787-54898806 | None:intergenic | 35.0% | |
| ATGCTCACATTATTCCTCTA+AGG | + | chr4_1:54899034-54899053 | Msa0556640:intron | 35.0% | |
| TGCATTAGTACTTCTTGAGA+TGG | - | chr4_1:54899399-54899418 | None:intergenic | 35.0% | |
| ! | CAATGGATGTAACTAGCTTA+TGG | + | chr4_1:54899469-54899488 | Msa0556640:CDS | 35.0% |
| AACTTTGTGTAGGAACTTGA+GGG | - | chr4_1:54899566-54899585 | None:intergenic | 35.0% | |
| ! | AGGTAGCAACATCTTTTACA+AGG | + | chr4_1:54899628-54899647 | Msa0556640:intron | 35.0% |
| ! | GGTAGCAACATCTTTTACAA+GGG | + | chr4_1:54899629-54899648 | Msa0556640:intron | 35.0% |
| !!! | TGCAATGGTTTTGATGATCT+AGG | - | chr4_1:54899732-54899751 | None:intergenic | 35.0% |
| ! | TCATGTGATGTTGTTTGCAA+TGG | - | chr4_1:54899747-54899766 | None:intergenic | 35.0% |
| ! | AGGGATCAAGAAGGATTTTT+AGG | + | chr4_1:54899799-54899818 | Msa0556640:CDS | 35.0% |
| ! | GGGATCAAGAAGGATTTTTA+GGG | + | chr4_1:54899800-54899819 | Msa0556640:CDS | 35.0% |
| !! | GGATCAAGAAGGATTTTTAG+GGG | + | chr4_1:54899801-54899820 | Msa0556640:CDS | 35.0% |
| TGATGAGGAAAAAGAGACTT+GGG | + | chr4_1:54899931-54899950 | Msa0556640:CDS | 35.0% | |
| ATGGTTCTTGCAGATGATAT+TGG | + | chr4_1:54899972-54899991 | Msa0556640:CDS | 35.0% | |
| CTGAAAAAATGGTACTTTGG+AGG | + | chr4_1:54900087-54900106 | Msa0556640:intron | 35.0% | |
| !! | AATGGTACTTTGGAGGATTT+TGG | + | chr4_1:54900094-54900113 | Msa0556640:intron | 35.0% |
| CATAACGTTACCATAAAGCT+GGG | - | chr4_1:54900346-54900365 | None:intergenic | 35.0% | |
| ACATAACGTTACCATAAAGC+TGG | - | chr4_1:54900347-54900366 | None:intergenic | 35.0% | |
| GCTAAAATTCTCAAGAAGGG+AGG | - | chr4_1:54898905-54898924 | None:intergenic | 40.0% | |
| GGTAAGCCAGAGAATTGATT+TGG | - | chr4_1:54899210-54899229 | None:intergenic | 40.0% | |
| TCCATTGCTCTTTGATACCA+TGG | - | chr4_1:54899456-54899475 | None:intergenic | 40.0% | |
| ACTTTGTGTAGGAACTTGAG+GGG | - | chr4_1:54899565-54899584 | None:intergenic | 40.0% | |
| GAACTTTGTGTAGGAACTTG+AGG | - | chr4_1:54899567-54899586 | None:intergenic | 40.0% | |
| ! | TTAGGAAAAGGAGTGTGATG+AGG | + | chr4_1:54899916-54899935 | Msa0556640:CDS | 40.0% |
| GTGATGAGGAAAAAGAGACT+TGG | + | chr4_1:54899930-54899949 | Msa0556640:CDS | 40.0% | |
| ACCATTCTACTAAGAGGACT+AGG | - | chr4_1:54899957-54899976 | None:intergenic | 40.0% | |
| GCAAGAACCATTCTACTAAG+AGG | - | chr4_1:54899963-54899982 | None:intergenic | 40.0% | |
| GAAAACCCAGTTGTAGAAAC+TGG | - | chr4_1:54900294-54900313 | None:intergenic | 40.0% | |
| ! | TGTTTTATGGCCCAGCTTTA+TGG | + | chr4_1:54900333-54900352 | Msa0556640:intron | 40.0% |
| GCTAAAATTCTCAAGAAGGG+AGG | - | chr4_1:54898905-54898924 | None:intergenic | 40.0% | |
| GGTAAGCCAGAGAATTGATT+TGG | - | chr4_1:54899210-54899229 | None:intergenic | 40.0% | |
| TCCATTGCTCTTTGATACCA+TGG | - | chr4_1:54899456-54899475 | None:intergenic | 40.0% | |
| ACTTTGTGTAGGAACTTGAG+GGG | - | chr4_1:54899565-54899584 | None:intergenic | 40.0% | |
| GAACTTTGTGTAGGAACTTG+AGG | - | chr4_1:54899567-54899586 | None:intergenic | 40.0% | |
| ! | TTAGGAAAAGGAGTGTGATG+AGG | + | chr4_1:54899916-54899935 | Msa0556640:CDS | 40.0% |
| GTGATGAGGAAAAAGAGACT+TGG | + | chr4_1:54899930-54899949 | Msa0556640:CDS | 40.0% | |
| ACCATTCTACTAAGAGGACT+AGG | - | chr4_1:54899957-54899976 | None:intergenic | 40.0% | |
| GCAAGAACCATTCTACTAAG+AGG | - | chr4_1:54899963-54899982 | None:intergenic | 40.0% | |
| GAAAACCCAGTTGTAGAAAC+TGG | - | chr4_1:54900294-54900313 | None:intergenic | 40.0% | |
| ! | TGTTTTATGGCCCAGCTTTA+TGG | + | chr4_1:54900333-54900352 | Msa0556640:intron | 40.0% |
| ! | CTCTGGCTTACCTGCTTTAT+AGG | + | chr4_1:54899218-54899237 | Msa0556640:intron | 45.0% |
| TTTCAAGATGCAGGAAGCCA+TGG | + | chr4_1:54899436-54899455 | Msa0556640:intron | 45.0% | |
| GCCATGGTATCAAAGAGCAA+TGG | + | chr4_1:54899452-54899471 | Msa0556640:CDS | 45.0% | |
| ! | GTAGGAACTTGAGGGGATTT+TGG | - | chr4_1:54899558-54899577 | None:intergenic | 45.0% |
| TTAGCACAGAGGGATCAAGA+AGG | + | chr4_1:54899790-54899809 | Msa0556640:CDS | 45.0% | |
| GCCTAGTCCTCTTAGTAGAA+TGG | + | chr4_1:54899953-54899972 | Msa0556640:CDS | 45.0% | |
| !! | GGTACTTTGGAGGATTTTGG+AGG | + | chr4_1:54900097-54900116 | Msa0556640:intron | 45.0% |
| ATAGGGCACGCGATAAATTG+TGG | + | chr4_1:54900157-54900176 | Msa0556640:intron | 45.0% | |
| TAGGGCACGCGATAAATTGT+GGG | + | chr4_1:54900158-54900177 | Msa0556640:intron | 45.0% | |
| ! | CTCTGGCTTACCTGCTTTAT+AGG | + | chr4_1:54899218-54899237 | Msa0556640:intron | 45.0% |
| TTTCAAGATGCAGGAAGCCA+TGG | + | chr4_1:54899436-54899455 | Msa0556640:intron | 45.0% | |
| GCCATGGTATCAAAGAGCAA+TGG | + | chr4_1:54899452-54899471 | Msa0556640:CDS | 45.0% | |
| ! | GTAGGAACTTGAGGGGATTT+TGG | - | chr4_1:54899558-54899577 | None:intergenic | 45.0% |
| TTAGCACAGAGGGATCAAGA+AGG | + | chr4_1:54899790-54899809 | Msa0556640:CDS | 45.0% | |
| GCCTAGTCCTCTTAGTAGAA+TGG | + | chr4_1:54899953-54899972 | Msa0556640:CDS | 45.0% | |
| !! | GGTACTTTGGAGGATTTTGG+AGG | + | chr4_1:54900097-54900116 | Msa0556640:intron | 45.0% |
| ATAGGGCACGCGATAAATTG+TGG | + | chr4_1:54900157-54900176 | Msa0556640:intron | 45.0% | |
| TAGGGCACGCGATAAATTGT+GGG | + | chr4_1:54900158-54900177 | Msa0556640:intron | 45.0% | |
| TAGTGCTAGGCTTAGCACAG+AGG | + | chr4_1:54899779-54899798 | Msa0556640:CDS | 50.0% | |
| AGTGCTAGGCTTAGCACAGA+GGG | + | chr4_1:54899780-54899799 | Msa0556640:CDS | 50.0% | |
| ATCTGAATAGGTGCGCGAGA+AGG | - | chr4_1:54900059-54900078 | None:intergenic | 50.0% | |
| TGTGGGCCAGTTTCTACAAC+TGG | + | chr4_1:54900285-54900304 | Msa0556640:intron | 50.0% | |
| GTGGGCCAGTTTCTACAACT+GGG | + | chr4_1:54900286-54900305 | Msa0556640:intron | 50.0% | |
| TAGTGCTAGGCTTAGCACAG+AGG | + | chr4_1:54899779-54899798 | Msa0556640:CDS | 50.0% | |
| AGTGCTAGGCTTAGCACAGA+GGG | + | chr4_1:54899780-54899799 | Msa0556640:CDS | 50.0% | |
| ATCTGAATAGGTGCGCGAGA+AGG | - | chr4_1:54900059-54900078 | None:intergenic | 50.0% | |
| TGTGGGCCAGTTTCTACAAC+TGG | + | chr4_1:54900285-54900304 | Msa0556640:intron | 50.0% | |
| GTGGGCCAGTTTCTACAACT+GGG | + | chr4_1:54900286-54900305 | Msa0556640:intron | 50.0% | |
| TAGGTGCGCGAGAAGGTTAG+AGG | - | chr4_1:54900052-54900071 | None:intergenic | 55.0% | |
| TAGGTGCGCGAGAAGGTTAG+AGG | - | chr4_1:54900052-54900071 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 54898567 | 54900436 | 54898567 | ID=Msa0556640;Name=Msa0556640 |
| chr4_1 | mRNA | 54898567 | 54900436 | 54898567 | ID=Msa0556640-mRNA-1;Parent=Msa0556640;Name=Msa0556640-mRNA-1;_AED=0.23;_eAED=0.23;_QI=196|0.25|0.2|0.8|0|0|5|0|192 |
| chr4_1 | exon | 54898567 | 54898851 | 54898567 | ID=Msa0556640-mRNA-1:exon:16294;Parent=Msa0556640-mRNA-1 |
| chr4_1 | exon | 54899449 | 54899569 | 54899449 | ID=Msa0556640-mRNA-1:exon:16295;Parent=Msa0556640-mRNA-1 |
| chr4_1 | exon | 54899630 | 54899860 | 54899630 | ID=Msa0556640-mRNA-1:exon:16296;Parent=Msa0556640-mRNA-1 |
| chr4_1 | exon | 54899870 | 54899997 | 54899870 | ID=Msa0556640-mRNA-1:exon:16297;Parent=Msa0556640-mRNA-1 |
| chr4_1 | exon | 54900430 | 54900436 | 54900430 | ID=Msa0556640-mRNA-1:exon:16298;Parent=Msa0556640-mRNA-1 |
| chr4_1 | five_prime_UTR | 54898567 | 54898762 | 54898567 | ID=Msa0556640-mRNA-1:five_prime_utr;Parent=Msa0556640-mRNA-1 |
| chr4_1 | CDS | 54898763 | 54898851 | 54898763 | ID=Msa0556640-mRNA-1:cds;Parent=Msa0556640-mRNA-1 |
| chr4_1 | CDS | 54899449 | 54899569 | 54899449 | ID=Msa0556640-mRNA-1:cds;Parent=Msa0556640-mRNA-1 |
| chr4_1 | CDS | 54899630 | 54899860 | 54899630 | ID=Msa0556640-mRNA-1:cds;Parent=Msa0556640-mRNA-1 |
| chr4_1 | CDS | 54899870 | 54899997 | 54899870 | ID=Msa0556640-mRNA-1:cds;Parent=Msa0556640-mRNA-1 |
| chr4_1 | CDS | 54900430 | 54900436 | 54900430 | ID=Msa0556640-mRNA-1:cds;Parent=Msa0556640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
