AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0296610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296610 MtrunA17_Chr2g0319281 87.739 261 1 1 1 261 1 230 2.76e-166 459
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296610 AT3G01440.1 48.627 255 94 4 1 254 1 219 1.29e-76 232
Msa0296610 AT4G21280.1 26.289 194 136 4 1 191 1 190 7.69e-13 66.6
Msa0296610 AT4G21280.2 26.154 195 136 5 1 191 1 191 3.86e-12 64.7
Msa0296610 AT1G14150.2 31.579 95 65 0 98 192 64 158 7.89e-11 59.7

Find 50 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTACTTGTCCTGTCTTAA+AGG 0.141076 2_3:+50019783 None:intergenic
CACATTTGTCTTCAATATTA+TGG 0.149032 2_3:+50018445 None:intergenic
TAGCTAAGGATAATGGATTT+TGG 0.177277 2_3:-50019633 Msa0296610:CDS
CAAGTAGTAGTTGGATTTCT+TGG 0.273988 2_3:-50019769 Msa0296610:CDS
TTAAAGGTTCTTTGTGCATT+TGG 0.275452 2_3:+50019799 None:intergenic
CTTGTTTCTCTAGTTCTTAC+TGG 0.282649 2_3:-50019679 Msa0296610:CDS
GAGTAGCTTCTTCACCATTA+TGG 0.285901 2_3:-50019881 Msa0296610:exon
TTTGGAACAAGGCATGTAAT+TGG 0.297323 2_3:+50019817 None:intergenic
CTATTAGTGACAGTTGGTTC+TGG 0.310416 2_3:+50019595 None:intergenic
AAACTCTACATGGCAAATAT+TGG 0.316818 2_3:-50018834 Msa0296610:CDS
GTGACAGTTGGTTCTGGAAT+AGG 0.317646 2_3:+50019601 None:intergenic
ATTTCACTAGCTAAGGATAA+TGG 0.333626 2_3:-50019640 Msa0296610:CDS
AATTGCTGCTTATCTTCAAC+TGG 0.340265 2_3:+50018654 None:intergenic
TGAAAGTAGACTTGAGTCTT+AGG 0.346421 2_3:+50018712 None:intergenic
TGTAATTGGAGTTAAAGTTT+TGG 0.348907 2_3:+50019831 None:intergenic
GATCCTTAAAACACTTCCTT+TGG 0.359342 2_3:+50018809 None:intergenic
GATATTGCAAATGAGAAAAC+GGG 0.400999 2_3:-50018879 Msa0296610:CDS
TGAAACACAAGCATGCTATA+AGG 0.409707 2_3:-50018196 Msa0296610:CDS
ACTCCATGCAAATTTGTTAG+AGG 0.418986 2_3:+50019856 None:intergenic
GACAGCTTGAAGAAGCTTCA+AGG 0.421927 2_3:-50018233 Msa0296610:intron
AAGACACACTTAACTATGTT+AGG 0.425767 2_3:-50018740 Msa0296610:CDS
GATTGTGTTGATTCAAGATA+AGG 0.436387 2_3:-50018057 Msa0296610:three_prime_UTR
AGATATTGCAAATGAGAAAA+CGG 0.438542 2_3:-50018880 Msa0296610:CDS
ATTTGTTAGAGGAGCCATAA+TGG 0.451258 2_3:+50019867 None:intergenic
AAGACAGGACAAGTAGTAGT+TGG 0.458371 2_3:-50019778 Msa0296610:CDS
ATCTTACTATTAGTGACAGT+TGG 0.488173 2_3:+50019589 None:intergenic
TTCTTTGTGCATTTGGAACA+AGG 0.495526 2_3:+50019806 None:intergenic
TAGCACTAGCACTTCCCAAA+TGG 0.498901 2_3:-50019977 Msa0296610:five_prime_UTR
TCCACTGAGTGGCACTAGAA+AGG 0.513605 2_3:+50020005 None:intergenic
TGAGAAGATTTCACTAGCTA+AGG 0.517657 2_3:-50019647 Msa0296610:CDS
TGCTTAAAGATGTCATGGAC+AGG 0.522204 2_3:-50018161 Msa0296610:CDS
TGCATTTGATCTTCTTGCAA+TGG 0.523001 2_3:-50018778 Msa0296610:CDS
AACCGCAATTGCAACTGCAT+CGG 0.523752 2_3:+50018484 None:intergenic
CACACAAGGGACCGCAATTG+TGG 0.535858 2_3:+50018412 None:intergenic
TTTGGGAAGTGCTAGTGCTA+TGG 0.552026 2_3:+50019980 None:intergenic
ATGGCAAATATTGGAGCCAA+AGG 0.555680 2_3:-50018825 Msa0296610:CDS
TATTAAGAAGAAACTCTACA+TGG 0.556885 2_3:-50018844 Msa0296610:CDS
GCACAAAGAACCTTTAAGAC+AGG 0.560597 2_3:-50019793 Msa0296610:CDS
TAAGCAGCAATTAACTGATG+TGG 0.578245 2_3:-50018643 Msa0296610:CDS
AGTTATGCTTAAAGATGTCA+TGG 0.580022 2_3:-50018166 Msa0296610:CDS
GGCCGATGCAGTTGCAATTG+CGG 0.587143 2_3:-50018486 Msa0296610:CDS
GCTCCTCTAACAAATTTGCA+TGG 0.591211 2_3:-50019859 Msa0296610:CDS
ATAGCATTTATCTATCTACA+AGG 0.601141 2_3:+50018025 None:intergenic
ACACACTTAACTATGTTAGG+AGG 0.615664 2_3:-50018737 Msa0296610:CDS
CAGTAAGAACTAGAGAAACA+AGG 0.619759 2_3:+50019680 None:intergenic
ATTGCTGCTTATCTTCAACT+GGG 0.622625 2_3:+50018655 None:intergenic
TCCTTTCTAGTGCCACTCAG+TGG 0.641696 2_3:-50020006 Msa0296610:five_prime_UTR
GTGCTATGGTGTCCACTGAG+TGG 0.645765 2_3:+50019994 None:intergenic
GATTGATGCAGCCACAATTG+CGG 0.697230 2_3:-50018423 Msa0296610:intron
ATATTGCAAATGAGAAAACG+GGG 0.743479 2_3:-50018878 Msa0296610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGATAATTCATTAAATTTT+TGG + chr2_3:50018042-50018061 None:intergenic 10.0%
!! TTAATAATAAATAAATGCAA+TGG - chr2_3:50018665-50018684 Msa0296610:CDS 10.0%
!!! TAGATAATTCATTAAATTTT+TGG + chr2_3:50018042-50018061 None:intergenic 10.0%
!! TTAATAATAAATAAATGCAA+TGG - chr2_3:50018665-50018684 Msa0296610:CDS 10.0%
!! TATAGCTAATTAATTTACAT+AGG - chr2_3:50018415-50018434 Msa0296610:intron 15.0%
!! AAATATTAATTGTACTATCA+TGG - chr2_3:50018618-50018637 Msa0296610:CDS 15.0%
!! CAAATTTACTTTAAATGTTA+CGG + chr2_3:50018900-50018919 None:intergenic 15.0%
!!! ATTGTTTGATAATTTTGAAA+AGG - chr2_3:50019358-50019377 Msa0296610:intron 15.0%
!! ATTCACATAATATTAAATTG+CGG + chr2_3:50019682-50019701 None:intergenic 15.0%
!! TATAGCTAATTAATTTACAT+AGG - chr2_3:50018415-50018434 Msa0296610:intron 15.0%
!! AAATATTAATTGTACTATCA+TGG - chr2_3:50018618-50018637 Msa0296610:CDS 15.0%
!! CAAATTTACTTTAAATGTTA+CGG + chr2_3:50018900-50018919 None:intergenic 15.0%
!!! ATTGTTTGATAATTTTGAAA+AGG - chr2_3:50019358-50019377 Msa0296610:intron 15.0%
!! ATTCACATAATATTAAATTG+CGG + chr2_3:50019682-50019701 None:intergenic 15.0%
!! TTTATGTTTCAATTGACATT+TGG - chr2_3:50018506-50018525 Msa0296610:intron 20.0%
!! TTATTTATTAAATCGAACGA+TGG - chr2_3:50018764-50018783 Msa0296610:CDS 20.0%
!! ATATTCTGTTATTCAAACTT+AGG + chr2_3:50018933-50018952 None:intergenic 20.0%
!! AATATTATGTGAATAGATGT+TGG - chr2_3:50019688-50019707 Msa0296610:CDS 20.0%
!! TTTATGTTTCAATTGACATT+TGG - chr2_3:50018506-50018525 Msa0296610:intron 20.0%
!! TTATTTATTAAATCGAACGA+TGG - chr2_3:50018764-50018783 Msa0296610:CDS 20.0%
!! ATATTCTGTTATTCAAACTT+AGG + chr2_3:50018933-50018952 None:intergenic 20.0%
!! AATATTATGTGAATAGATGT+TGG - chr2_3:50019688-50019707 Msa0296610:CDS 20.0%
!! TTTTTGTGACATATCCATTT+GGG + chr2_3:50018011-50018030 None:intergenic 25.0%
!!! TTTTTTGTGACATATCCATT+TGG + chr2_3:50018012-50018031 None:intergenic 25.0%
!! TGTAATTGGAGTTAAAGTTT+TGG + chr2_3:50018143-50018162 None:intergenic 25.0%
!! TTCATTGCTATTATGTTTGT+TGG - chr2_3:50018480-50018499 Msa0296610:CDS 25.0%
!! ACATTTGGAACAATTATGAT+TGG - chr2_3:50018521-50018540 Msa0296610:intron 25.0%
! CATAACTGTATAAAAGAACA+TGG + chr2_3:50018566-50018585 None:intergenic 25.0%
! TTAGGAGAAATCATGTAAAT+TGG - chr2_3:50018873-50018892 Msa0296610:CDS 25.0%
!!! TGTATGTTTACTTTTGAACT+AGG - chr2_3:50019030-50019049 Msa0296610:intron 25.0%
!!! GTATGTTTACTTTTGAACTA+GGG - chr2_3:50019031-50019050 Msa0296610:intron 25.0%
! CAATGTGAATGATGATTATA+TGG - chr2_3:50019066-50019085 Msa0296610:intron 25.0%
! AGATATTGCAAATGAGAAAA+CGG - chr2_3:50019091-50019110 Msa0296610:intron 25.0%
! TATTAAGAAGAAACTCTACA+TGG - chr2_3:50019127-50019146 Msa0296610:intron 25.0%
! ATAACTGCAGTTAAAAACAA+CGG + chr2_3:50019430-50019449 None:intergenic 25.0%
!! CATTTTTGTCTGCAATATTA+AGG + chr2_3:50019466-50019485 None:intergenic 25.0%
! CTTAATATTGCAGACAAAAA+TGG - chr2_3:50019464-50019483 Msa0296610:intron 25.0%
! CACATTTGTCTTCAATATTA+TGG + chr2_3:50019529-50019548 None:intergenic 25.0%
! ATAGCATTTATCTATCTACA+AGG + chr2_3:50019949-50019968 None:intergenic 25.0%
!! TTTTTGTGACATATCCATTT+GGG + chr2_3:50018011-50018030 None:intergenic 25.0%
!!! TTTTTTGTGACATATCCATT+TGG + chr2_3:50018012-50018031 None:intergenic 25.0%
!! TGTAATTGGAGTTAAAGTTT+TGG + chr2_3:50018143-50018162 None:intergenic 25.0%
!! TTCATTGCTATTATGTTTGT+TGG - chr2_3:50018480-50018499 Msa0296610:CDS 25.0%
!! ACATTTGGAACAATTATGAT+TGG - chr2_3:50018521-50018540 Msa0296610:intron 25.0%
! CATAACTGTATAAAAGAACA+TGG + chr2_3:50018566-50018585 None:intergenic 25.0%
! TTAGGAGAAATCATGTAAAT+TGG - chr2_3:50018873-50018892 Msa0296610:CDS 25.0%
!!! TGTATGTTTACTTTTGAACT+AGG - chr2_3:50019030-50019049 Msa0296610:intron 25.0%
!!! GTATGTTTACTTTTGAACTA+GGG - chr2_3:50019031-50019050 Msa0296610:intron 25.0%
! CAATGTGAATGATGATTATA+TGG - chr2_3:50019066-50019085 Msa0296610:intron 25.0%
! AGATATTGCAAATGAGAAAA+CGG - chr2_3:50019091-50019110 Msa0296610:intron 25.0%
! TATTAAGAAGAAACTCTACA+TGG - chr2_3:50019127-50019146 Msa0296610:intron 25.0%
! ATAACTGCAGTTAAAAACAA+CGG + chr2_3:50019430-50019449 None:intergenic 25.0%
!! CATTTTTGTCTGCAATATTA+AGG + chr2_3:50019466-50019485 None:intergenic 25.0%
! CTTAATATTGCAGACAAAAA+TGG - chr2_3:50019464-50019483 Msa0296610:intron 25.0%
! CACATTTGTCTTCAATATTA+TGG + chr2_3:50019529-50019548 None:intergenic 25.0%
! ATAGCATTTATCTATCTACA+AGG + chr2_3:50019949-50019968 None:intergenic 25.0%
TTAAAGGTTCTTTGTGCATT+TGG + chr2_3:50018175-50018194 None:intergenic 30.0%
ATTTCACTAGCTAAGGATAA+TGG - chr2_3:50018331-50018350 Msa0296610:intron 30.0%
!!! TAGCTAAGGATAATGGATTT+TGG - chr2_3:50018338-50018357 Msa0296610:intron 30.0%
!!! GATAATGGATTTTGGATTGA+TGG - chr2_3:50018346-50018365 Msa0296610:intron 30.0%
ATCTTACTATTAGTGACAGT+TGG + chr2_3:50018385-50018404 None:intergenic 30.0%
CTTATGATTGAAAGTTAGCA+TGG - chr2_3:50018587-50018606 Msa0296610:intron 30.0%
! AAAGATTTTATCGCAGAGTT+CGG + chr2_3:50018986-50019005 None:intergenic 30.0%
GATATTGCAAATGAGAAAAC+GGG - chr2_3:50019092-50019111 Msa0296610:intron 30.0%
ATATTGCAAATGAGAAAACG+GGG - chr2_3:50019093-50019112 Msa0296610:intron 30.0%
AAACTCTACATGGCAAATAT+TGG - chr2_3:50019137-50019156 Msa0296610:intron 30.0%
AAGACACACTTAACTATGTT+AGG - chr2_3:50019231-50019250 Msa0296610:intron 30.0%
!! CATGTACTTTGATTTTGACA+AGG - chr2_3:50019280-50019299 Msa0296610:intron 30.0%
TTAAAAACAACGGATAATCG+CGG + chr2_3:50019420-50019439 None:intergenic 30.0%
CATAAAGTTGCAAACTAATG+TGG - chr2_3:50019600-50019619 Msa0296610:CDS 30.0%
AGTTATGCTTAAAGATGTCA+TGG - chr2_3:50019805-50019824 Msa0296610:CDS 30.0%
!! GATTGTGTTGATTCAAGATA+AGG - chr2_3:50019914-50019933 Msa0296610:five_prime_UTR 30.0%
TTAAAGGTTCTTTGTGCATT+TGG + chr2_3:50018175-50018194 None:intergenic 30.0%
ATTTCACTAGCTAAGGATAA+TGG - chr2_3:50018331-50018350 Msa0296610:intron 30.0%
!!! TAGCTAAGGATAATGGATTT+TGG - chr2_3:50018338-50018357 Msa0296610:intron 30.0%
!!! GATAATGGATTTTGGATTGA+TGG - chr2_3:50018346-50018365 Msa0296610:intron 30.0%
ATCTTACTATTAGTGACAGT+TGG + chr2_3:50018385-50018404 None:intergenic 30.0%
CTTATGATTGAAAGTTAGCA+TGG - chr2_3:50018587-50018606 Msa0296610:intron 30.0%
! AAAGATTTTATCGCAGAGTT+CGG + chr2_3:50018986-50019005 None:intergenic 30.0%
GATATTGCAAATGAGAAAAC+GGG - chr2_3:50019092-50019111 Msa0296610:intron 30.0%
ATATTGCAAATGAGAAAACG+GGG - chr2_3:50019093-50019112 Msa0296610:intron 30.0%
AAACTCTACATGGCAAATAT+TGG - chr2_3:50019137-50019156 Msa0296610:intron 30.0%
AAGACACACTTAACTATGTT+AGG - chr2_3:50019231-50019250 Msa0296610:intron 30.0%
!! CATGTACTTTGATTTTGACA+AGG - chr2_3:50019280-50019299 Msa0296610:intron 30.0%
TTAAAAACAACGGATAATCG+CGG + chr2_3:50019420-50019439 None:intergenic 30.0%
CATAAAGTTGCAAACTAATG+TGG - chr2_3:50019600-50019619 Msa0296610:CDS 30.0%
AGTTATGCTTAAAGATGTCA+TGG - chr2_3:50019805-50019824 Msa0296610:CDS 30.0%
!! GATTGTGTTGATTCAAGATA+AGG - chr2_3:50019914-50019933 Msa0296610:five_prime_UTR 30.0%
! ATTTGTTAGAGGAGCCATAA+TGG + chr2_3:50018107-50018126 None:intergenic 35.0%
!! ACTCCATGCAAATTTGTTAG+AGG + chr2_3:50018118-50018137 None:intergenic 35.0%
! TTTGGAACAAGGCATGTAAT+TGG + chr2_3:50018157-50018176 None:intergenic 35.0%
! TTCTTTGTGCATTTGGAACA+AGG + chr2_3:50018168-50018187 None:intergenic 35.0%
TACTACTTGTCCTGTCTTAA+AGG + chr2_3:50018191-50018210 None:intergenic 35.0%
CAAGTAGTAGTTGGATTTCT+TGG - chr2_3:50018202-50018221 Msa0296610:CDS 35.0%
CAGTAAGAACTAGAGAAACA+AGG + chr2_3:50018294-50018313 None:intergenic 35.0%
!! CTTGTTTCTCTAGTTCTTAC+TGG - chr2_3:50018292-50018311 Msa0296610:intron 35.0%
TGAGAAGATTTCACTAGCTA+AGG - chr2_3:50018324-50018343 Msa0296610:intron 35.0%
TACTATCGTGCTTCACTAAT+AGG + chr2_3:50018711-50018730 None:intergenic 35.0%
GTTCGTTGTACTAATTGTCA+TGG - chr2_3:50018800-50018819 Msa0296610:CDS 35.0%
GATCCTTAAAACACTTCCTT+TGG + chr2_3:50019165-50019184 None:intergenic 35.0%
TGCATTTGATCTTCTTGCAA+TGG - chr2_3:50019193-50019212 Msa0296610:intron 35.0%
ACACACTTAACTATGTTAGG+AGG - chr2_3:50019234-50019253 Msa0296610:intron 35.0%
TGAAAGTAGACTTGAGTCTT+AGG + chr2_3:50019262-50019281 None:intergenic 35.0%
! ATTGCTGCTTATCTTCAACT+GGG + chr2_3:50019319-50019338 None:intergenic 35.0%
! AATTGCTGCTTATCTTCAAC+TGG + chr2_3:50019320-50019339 None:intergenic 35.0%
TAAGCAGCAATTAACTGATG+TGG - chr2_3:50019328-50019347 Msa0296610:intron 35.0%
TGAAACACAAGCATGCTATA+AGG - chr2_3:50019775-50019794 Msa0296610:CDS 35.0%
! ATTTGTTAGAGGAGCCATAA+TGG + chr2_3:50018107-50018126 None:intergenic 35.0%
!! ACTCCATGCAAATTTGTTAG+AGG + chr2_3:50018118-50018137 None:intergenic 35.0%
! TTTGGAACAAGGCATGTAAT+TGG + chr2_3:50018157-50018176 None:intergenic 35.0%
! TTCTTTGTGCATTTGGAACA+AGG + chr2_3:50018168-50018187 None:intergenic 35.0%
TACTACTTGTCCTGTCTTAA+AGG + chr2_3:50018191-50018210 None:intergenic 35.0%
CAAGTAGTAGTTGGATTTCT+TGG - chr2_3:50018202-50018221 Msa0296610:CDS 35.0%
CAGTAAGAACTAGAGAAACA+AGG + chr2_3:50018294-50018313 None:intergenic 35.0%
!! CTTGTTTCTCTAGTTCTTAC+TGG - chr2_3:50018292-50018311 Msa0296610:intron 35.0%
TGAGAAGATTTCACTAGCTA+AGG - chr2_3:50018324-50018343 Msa0296610:intron 35.0%
TACTATCGTGCTTCACTAAT+AGG + chr2_3:50018711-50018730 None:intergenic 35.0%
GTTCGTTGTACTAATTGTCA+TGG - chr2_3:50018800-50018819 Msa0296610:CDS 35.0%
GATCCTTAAAACACTTCCTT+TGG + chr2_3:50019165-50019184 None:intergenic 35.0%
TGCATTTGATCTTCTTGCAA+TGG - chr2_3:50019193-50019212 Msa0296610:intron 35.0%
ACACACTTAACTATGTTAGG+AGG - chr2_3:50019234-50019253 Msa0296610:intron 35.0%
TGAAAGTAGACTTGAGTCTT+AGG + chr2_3:50019262-50019281 None:intergenic 35.0%
! ATTGCTGCTTATCTTCAACT+GGG + chr2_3:50019319-50019338 None:intergenic 35.0%
! AATTGCTGCTTATCTTCAAC+TGG + chr2_3:50019320-50019339 None:intergenic 35.0%
TAAGCAGCAATTAACTGATG+TGG - chr2_3:50019328-50019347 Msa0296610:intron 35.0%
TGAAACACAAGCATGCTATA+AGG - chr2_3:50019775-50019794 Msa0296610:CDS 35.0%
GAGTAGCTTCTTCACCATTA+TGG - chr2_3:50018090-50018109 Msa0296610:three_prime_UTR 40.0%
GCTCCTCTAACAAATTTGCA+TGG - chr2_3:50018112-50018131 Msa0296610:three_prime_UTR 40.0%
!! GCACAAAGAACCTTTAAGAC+AGG - chr2_3:50018178-50018197 Msa0296610:CDS 40.0%
AAGACAGGACAAGTAGTAGT+TGG - chr2_3:50018193-50018212 Msa0296610:CDS 40.0%
! CTATTAGTGACAGTTGGTTC+TGG + chr2_3:50018379-50018398 None:intergenic 40.0%
ATGGCAAATATTGGAGCCAA+AGG - chr2_3:50019146-50019165 Msa0296610:intron 40.0%
!!! GAGCCAAAGGAAGTGTTTTA+AGG - chr2_3:50019159-50019178 Msa0296610:intron 40.0%
TCAAGTAGCACAACACACAA+GGG + chr2_3:50019575-50019594 None:intergenic 40.0%
ATCAAGTAGCACAACACACA+AGG + chr2_3:50019576-50019595 None:intergenic 40.0%
GCAAACTAATGTGGCTAATG+CGG - chr2_3:50019609-50019628 Msa0296610:CDS 40.0%
TGCTTAAAGATGTCATGGAC+AGG - chr2_3:50019810-50019829 Msa0296610:CDS 40.0%
GAGTAGCTTCTTCACCATTA+TGG - chr2_3:50018090-50018109 Msa0296610:three_prime_UTR 40.0%
GCTCCTCTAACAAATTTGCA+TGG - chr2_3:50018112-50018131 Msa0296610:three_prime_UTR 40.0%
!! GCACAAAGAACCTTTAAGAC+AGG - chr2_3:50018178-50018197 Msa0296610:CDS 40.0%
AAGACAGGACAAGTAGTAGT+TGG - chr2_3:50018193-50018212 Msa0296610:CDS 40.0%
! CTATTAGTGACAGTTGGTTC+TGG + chr2_3:50018379-50018398 None:intergenic 40.0%
ATGGCAAATATTGGAGCCAA+AGG - chr2_3:50019146-50019165 Msa0296610:intron 40.0%
!!! GAGCCAAAGGAAGTGTTTTA+AGG - chr2_3:50019159-50019178 Msa0296610:intron 40.0%
TCAAGTAGCACAACACACAA+GGG + chr2_3:50019575-50019594 None:intergenic 40.0%
ATCAAGTAGCACAACACACA+AGG + chr2_3:50019576-50019595 None:intergenic 40.0%
GCAAACTAATGTGGCTAATG+CGG - chr2_3:50019609-50019628 Msa0296610:CDS 40.0%
TGCTTAAAGATGTCATGGAC+AGG - chr2_3:50019810-50019829 Msa0296610:CDS 40.0%
!! TTTGGGAAGTGCTAGTGCTA+TGG + chr2_3:50017994-50018013 None:intergenic 45.0%
TAGCACTAGCACTTCCCAAA+TGG - chr2_3:50017994-50018013 Msa0296610:three_prime_UTR 45.0%
!! GTGACAGTTGGTTCTGGAAT+AGG + chr2_3:50018373-50018392 None:intergenic 45.0%
GCTGACTAGACCATACTAAG+CGG - chr2_3:50018849-50018868 Msa0296610:CDS 45.0%
TAGACCATACTAAGCGGCTT+AGG - chr2_3:50018855-50018874 Msa0296610:CDS 45.0%
TTCTCCTAAGCCGCTTAGTA+TGG + chr2_3:50018862-50018881 None:intergenic 45.0%
GTCAGAGACGTAGACACAAT+TGG - chr2_3:50018960-50018979 Msa0296610:intron 45.0%
AACCGCAATTGCAACTGCAT+CGG + chr2_3:50019490-50019509 None:intergenic 45.0%
GATTGATGCAGCCACAATTG+CGG - chr2_3:50019548-50019567 Msa0296610:intron 45.0%
ATGTCGTTGGACCACAATTG+CGG + chr2_3:50019635-50019654 None:intergenic 45.0%
AATTGCGGCACAAATGTCGT+TGG + chr2_3:50019648-50019667 None:intergenic 45.0%
GACAGCTTGAAGAAGCTTCA+AGG - chr2_3:50019738-50019757 Msa0296610:CDS 45.0%
!! TTTGGGAAGTGCTAGTGCTA+TGG + chr2_3:50017994-50018013 None:intergenic 45.0%
TAGCACTAGCACTTCCCAAA+TGG - chr2_3:50017994-50018013 Msa0296610:three_prime_UTR 45.0%
!! GTGACAGTTGGTTCTGGAAT+AGG + chr2_3:50018373-50018392 None:intergenic 45.0%
GCTGACTAGACCATACTAAG+CGG - chr2_3:50018849-50018868 Msa0296610:CDS 45.0%
TAGACCATACTAAGCGGCTT+AGG - chr2_3:50018855-50018874 Msa0296610:CDS 45.0%
TTCTCCTAAGCCGCTTAGTA+TGG + chr2_3:50018862-50018881 None:intergenic 45.0%
GTCAGAGACGTAGACACAAT+TGG - chr2_3:50018960-50018979 Msa0296610:intron 45.0%
AACCGCAATTGCAACTGCAT+CGG + chr2_3:50019490-50019509 None:intergenic 45.0%
GATTGATGCAGCCACAATTG+CGG - chr2_3:50019548-50019567 Msa0296610:intron 45.0%
ATGTCGTTGGACCACAATTG+CGG + chr2_3:50019635-50019654 None:intergenic 45.0%
AATTGCGGCACAAATGTCGT+TGG + chr2_3:50019648-50019667 None:intergenic 45.0%
GACAGCTTGAAGAAGCTTCA+AGG - chr2_3:50019738-50019757 Msa0296610:CDS 45.0%
!! TAATAAATAAACAAATATAA+TGG + chr2_3:50018754-50018773 None:intergenic 5.0%
!! TAATAAATAAACAAATATAA+TGG + chr2_3:50018754-50018773 None:intergenic 5.0%
GCGGCATATTCAATCTCGAG+AGG + chr2_3:50019401-50019420 None:intergenic 50.0%
GCGGTCAACAACTGCAATTG+CGG + chr2_3:50019663-50019682 None:intergenic 50.0%
GCGGCATATTCAATCTCGAG+AGG + chr2_3:50019401-50019420 None:intergenic 50.0%
GCGGTCAACAACTGCAATTG+CGG + chr2_3:50019663-50019682 None:intergenic 50.0%
GTGCTATGGTGTCCACTGAG+TGG + chr2_3:50017980-50017999 None:intergenic 55.0%
GGCCGATGCAGTTGCAATTG+CGG - chr2_3:50019485-50019504 Msa0296610:intron 55.0%
CACACAAGGGACCGCAATTG+TGG + chr2_3:50019562-50019581 None:intergenic 55.0%
GTGCTATGGTGTCCACTGAG+TGG + chr2_3:50017980-50017999 None:intergenic 55.0%
GGCCGATGCAGTTGCAATTG+CGG - chr2_3:50019485-50019504 Msa0296610:intron 55.0%
CACACAAGGGACCGCAATTG+TGG + chr2_3:50019562-50019581 None:intergenic 55.0%
GGCTAATGCGGCCGCAATTG+TGG - chr2_3:50019621-50019640 Msa0296610:CDS 60.0%
GGCTAATGCGGCCGCAATTG+TGG - chr2_3:50019621-50019640 Msa0296610:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 50017967 50020026 50017967 ID=Msa0296610;Name=Msa0296610
chr2_3 mRNA 50017967 50020026 50017967 ID=Msa0296610-mRNA-1;Parent=Msa0296610;Name=Msa0296610-mRNA-1;_AED=0.05;_eAED=0.05;_QI=142|0.33|0.75|0.75|1|1|4|167|261
chr2_3 exon 50017967 50018250 50017967 ID=Msa0296610-mRNA-1:exon:15725;Parent=Msa0296610-mRNA-1
chr2_3 exon 50018424 50018516 50018424 ID=Msa0296610-mRNA-1:exon:15724;Parent=Msa0296610-mRNA-1
chr2_3 exon 50018614 50018900 50018614 ID=Msa0296610-mRNA-1:exon:15723;Parent=Msa0296610-mRNA-1
chr2_3 exon 50019596 50020026 50019596 ID=Msa0296610-mRNA-1:exon:15722;Parent=Msa0296610-mRNA-1
chr2_3 five_prime_UTR 50019885 50020026 50019885 ID=Msa0296610-mRNA-1:five_prime_utr;Parent=Msa0296610-mRNA-1
chr2_3 CDS 50019596 50019884 50019596 ID=Msa0296610-mRNA-1:cds;Parent=Msa0296610-mRNA-1
chr2_3 CDS 50018614 50018900 50018614 ID=Msa0296610-mRNA-1:cds;Parent=Msa0296610-mRNA-1
chr2_3 CDS 50018424 50018516 50018424 ID=Msa0296610-mRNA-1:cds;Parent=Msa0296610-mRNA-1
chr2_3 CDS 50018134 50018250 50018134 ID=Msa0296610-mRNA-1:cds;Parent=Msa0296610-mRNA-1
chr2_3 three_prime_UTR 50017967 50018133 50017967 ID=Msa0296610-mRNA-1:three_prime_utr;Parent=Msa0296610-mRNA-1
Gene Sequence

>Msa0296610

ATGGCTCCTCTAACAAATTTGCATGGAGTCTCCAAAACTTTAACTCCAATTACATGCCTTGTTCCAAATGCACAAAGAACCTTTAAGACAGGACAAGTAGTAGTTGGATTTCTTGGAAGCAAAACAAAGAAATCATCAGAATGTGAATCAGTTAACACTACAAGAAGAGCAGCTGCAATAAGCCTTGTTTCTCTAGTTCTTACTGGACAATTCAGTGAGAAGATTTCACTAGCTAAGGATAATGGATTTTGGATTGATGGACCTATTCCAGAACCAACTGTCACTAATAATATTGCAAATGAGAAAACGGGGACACGTTCTTTTATTAAGAAGAAACTCTACATGGCAAATATTGGAGCCAAAGGAAGTGTTTTAAGGATCAAGAAATATGCATTTGATCTTCTTGCAATGGCAGATTTGATTGCACAAGACACACTTAACTATGTTAGGAGGTACCTAAGACTCAAGTCTACTTTCATGTACTTTGATTTTGACAAGGTTATCTCTGCTGTCCCAGTTGAAGATAAGCAGCAATTAACTGATGTGGCAAACAAATTGTTTGATAATTTTGAAAAGACAAAAATGGCCGATGCAGTTGCAATTGCGGTTGCAATCACACTGCAGTCCATAATATTGAAGACAAATGTGATTGATGCAGCCACAATTGCGCTTGAAGAAGCTTCAAGGAACAAAAATCTACTTGAAACACAAGCATGCTATAAGGAAACTGAAGTTATGCTTAAAGATGTCATGGACAGGATGACTATAATGTATAAAACAATTTGA

Protein sequence

>Msa0296610

MAPLTNLHGVSKTLTPITCLVPNAQRTFKTGQVVVGFLGSKTKKSSECESVNTTRRAAAISLVSLVLTGQFSEKISLAKDNGFWIDGPIPEPTVTNNIANEKTGTRSFIKKKLYMANIGAKGSVLRIKKYAFDLLAMADLIAQDTLNYVRRYLRLKSTFMYFDFDKVISAVPVEDKQQLTDVANKLFDNFEKTKMADAVAIAVAITLQSIILKTNVIDAATIALEEASRNKNLLETQACYKETEVMLKDVMDRMTIMYKTI*