AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0134040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0134040 MtrunA17_Chr1g0203671 98.864 792 9 0 1 792 1 792 0.0 1619
Msa0134040 MtrunA17_Chr8g0350321 65.146 789 243 13 14 790 39 807 0.0 1001
Msa0134040 MtrunA17_Chr7g0246631 65.844 729 220 9 69 790 69 775 0.0 978
Msa0134040 MtrunA17_Chr6g0472471 58.344 773 295 12 34 792 9 768 0.0 882
Msa0134040 MtrunA17_Chr2g0322731 53.678 734 301 10 60 789 67 765 0.0 740
Msa0134040 MtrunA17_Chr4g0024351 51.907 734 317 11 60 789 28 729 0.0 730
Msa0134040 MtrunA17_Chr6g0481041 46.133 724 349 15 86 789 21 723 0.0 629
Msa0134040 MtrunA17_Chr5g0410711 41.486 740 402 16 63 789 57 778 0.0 586
Msa0134040 MtrunA17_Chr2g0331581 41.954 696 350 11 99 789 143 789 0.0 564
Msa0134040 MtrunA17_Chr5g0394111 37.158 732 356 12 68 789 9 646 4.08e-155 467
Msa0134040 MtrunA17_Chr7g0224451 40.755 503 216 14 94 587 15 444 9.42e-114 352
Msa0134040 MtrunA17_Chr2g0292731 32.302 517 322 12 286 789 47 548 8.00e-87 285
Msa0134040 MtrunA17_Chr2g0292741 31.384 513 327 11 286 789 39 535 5.56e-82 272
Msa0134040 MtrunA17_Chr7g0224481 38.817 389 167 10 94 475 15 339 1.28e-77 254
Msa0134040 MtrunA17_Chr7g0224491 46.082 319 139 10 478 789 1 293 9.05e-75 245
Msa0134040 MtrunA17_Chr2g0292761 29.839 620 347 18 176 789 3 540 1.52e-70 241
Msa0134040 MtrunA17_Chr5g0419821 55.118 127 56 1 90 215 28 154 4.45e-42 151
Msa0134040 MtrunA17_Chr2g0319671 31.801 261 133 5 301 526 18 268 1.11e-35 137
Msa0134040 MtrunA17_Chr2g0319681 36.017 236 135 6 559 789 1 225 2.25e-32 125
Msa0134040 MtrunA17_Chr2g0319701 35.146 239 131 8 559 789 1 223 3.06e-30 120
Msa0134040 MtrunA17_Chr1g0205981 32.110 218 110 5 150 359 1 188 2.72e-24 101
Msa0134040 MtrunA17_Chr2g0319691 39.062 128 70 3 414 539 1 122 8.91e-23 95.5
Msa0134040 MtrunA17_Chr7g0224461 45.312 128 46 4 674 790 1 115 1.70e-21 90.5
Msa0134040 MtrunA17_Chr2g0304191 28.244 131 93 1 309 438 1 131 9.32e-16 74.7
Msa0134040 MtrunA17_Chr1g0179581 39.326 89 44 3 91 172 24 109 7.87e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0134040 AT4G00730.1 63.108 740 239 9 51 790 94 799 0.0 917
Msa0134040 AT3G61150.1 58.313 818 272 15 1 789 26 803 0.0 905
Msa0134040 AT4G04890.2 53.117 738 318 12 54 789 24 735 0.0 770
Msa0134040 AT4G04890.1 53.117 738 318 12 54 789 24 735 0.0 770
Msa0134040 AT5G52170.3 51.905 761 276 14 40 791 1 680 0.0 748
Msa0134040 AT5G52170.1 51.905 761 276 14 40 791 1 680 0.0 748
Msa0134040 AT1G05230.8 51.701 735 303 12 59 789 30 716 0.0 743
Msa0134040 AT1G05230.4 51.701 735 303 12 59 789 30 716 0.0 743
Msa0134040 AT1G05230.9 51.701 735 303 12 59 789 30 716 0.0 743
Msa0134040 AT1G05230.10 51.701 735 303 12 59 789 30 716 0.0 743
Msa0134040 AT1G05230.7 51.701 735 303 12 59 789 30 716 0.0 743
Msa0134040 AT1G05230.11 51.701 735 303 12 59 789 30 716 0.0 743
Msa0134040 AT1G05230.2 51.701 735 303 12 59 789 30 716 0.0 743
Msa0134040 AT1G05230.6 51.701 735 303 12 59 789 30 716 0.0 743
Msa0134040 AT1G05230.5 51.701 735 303 12 59 789 30 716 0.0 743
Msa0134040 AT1G05230.1 51.701 735 303 12 59 789 30 716 0.0 743
Msa0134040 AT5G52170.2 51.305 766 278 14 40 791 1 685 0.0 741
Msa0134040 AT1G05230.3 51.565 735 302 13 59 789 30 714 0.0 735
Msa0134040 AT4G21750.2 50.986 761 321 14 54 789 24 757 0.0 734
Msa0134040 AT4G21750.1 50.986 761 321 14 54 789 24 757 0.0 734
Msa0134040 AT4G21750.3 50.986 761 321 14 54 789 24 757 0.0 734
Msa0134040 AT4G21750.4 50.986 761 321 14 54 789 24 757 0.0 734
Msa0134040 AT1G73360.1 46.273 711 339 14 94 789 31 713 0.0 607
Msa0134040 AT1G05230.12 50.487 616 264 11 54 665 25 603 0.0 607
Msa0134040 AT4G00730.2 60.852 493 166 7 51 543 94 559 0.0 592
Msa0134040 AT1G17920.2 44.587 702 335 14 98 789 24 681 0.0 587
Msa0134040 AT1G17920.1 44.587 702 335 14 98 789 24 681 0.0 587
Msa0134040 AT2G32370.1 40.028 727 377 12 70 786 40 717 0.0 546
Msa0134040 AT1G79840.3 39.860 715 358 15 87 791 34 686 1.09e-177 526
Msa0134040 AT1G79840.6 39.860 715 358 15 87 791 34 686 1.09e-177 526
Msa0134040 AT1G79840.1 39.860 715 358 15 87 791 92 744 6.12e-177 526
Msa0134040 AT1G79840.2 39.691 713 362 14 87 791 121 773 7.66e-176 525
Msa0134040 AT5G46880.3 39.757 742 388 19 79 789 93 806 1.76e-171 515
Msa0134040 AT5G46880.1 39.757 742 388 19 79 789 93 806 1.76e-171 515
Msa0134040 AT5G46880.2 39.757 742 388 19 79 789 93 806 1.76e-171 515
Msa0134040 AT4G25530.1 39.028 720 367 15 76 789 29 682 9.81e-165 493
Msa0134040 AT1G79840.4 40.000 585 285 13 87 661 92 620 4.02e-143 436
Msa0134040 AT3G03260.1 34.060 734 415 17 79 789 7 694 1.12e-136 421
Msa0134040 AT4G17710.1 34.907 699 368 16 95 789 88 703 2.38e-129 402
Msa0134040 AT5G17320.1 34.008 741 439 22 74 790 2 716 2.99e-122 384
Msa0134040 AT1G34650.1 32.642 723 440 16 85 789 12 705 1.79e-113 361
Msa0134040 AT3G03260.2 33.692 558 329 13 79 627 7 532 1.07e-101 325
Msa0134040 AT1G79840.5 38.013 463 223 11 87 540 92 499 6.30e-99 317
Msa0134040 AT5G07260.1 25.841 565 335 16 160 722 9 491 8.31e-49 181
Msa0134040 AT5G07260.2 26.018 565 329 16 160 722 9 486 1.24e-48 181
Msa0134040 AT1G30490.1 37.255 102 55 3 81 178 6 102 4.63e-11 67.0

Find 239 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCGTCCGTTGCTTATTTC+TGG 0.113009 1_3:-65483913 Msa0134040:CDS
CCGTTGCTTATTTCTGGTTT+TGG 0.171502 1_3:-65483907 Msa0134040:CDS
GGTGCTCTTCGAACAATATT+TGG 0.196521 1_3:+65485851 None:intergenic
AGATAGTCCTGTTTGGATTA+AGG 0.217419 1_3:-65485482 Msa0134040:CDS
GAAGACTATTCACCAGAATT+TGG 0.222863 1_3:+65482839 None:intergenic
GTGCTTCATCTGCTAGAAAA+TGG 0.232062 1_3:-65483616 Msa0134040:CDS
TCAGCATTGCATTAACAAAA+TGG 0.246356 1_3:+65482716 None:intergenic
AAAATAAACAAGTCAAATTC+TGG 0.263814 1_3:-65486272 Msa0134040:CDS
CCACCACAGTTGTTGCATAT+TGG 0.272733 1_3:+65485889 None:intergenic
GATAGTCCTGTTTGGATTAA+GGG 0.278755 1_3:-65485481 Msa0134040:CDS
TTTGATCTTGAAGGAATATC+TGG 0.281916 1_3:-65486547 Msa0134040:CDS
ATGACCAACAACTTCTGTTC+TGG 0.284388 1_3:-65483644 Msa0134040:CDS
ATTTAATACTCACCTTCATT+TGG 0.297931 1_3:+65486232 None:intergenic
CAGAACAGACACATATGTTT+TGG 0.300815 1_3:+65482430 None:intergenic
GGATTAGCCAATGATGATAT+TGG 0.305207 1_3:+65485751 None:intergenic
TCCTGTTTGGATTAAGGGCT+TGG 0.312251 1_3:-65485476 Msa0134040:CDS
GACAAGTCTTGCAACCTTAC+AGG 0.315039 1_3:+65486874 None:intergenic
CACAGTCGGATTCCAAATTC+TGG 0.317732 1_3:-65482851 Msa0134040:CDS
TATGTTGCACTCTTGCCTTC+AGG 0.326578 1_3:-65482973 Msa0134040:CDS
TCAAGCTCTTGAATTTGATT+AGG 0.330233 1_3:+65486460 None:intergenic
TTGGATTTGGCGCTCATAGA+TGG 0.334166 1_3:-65483888 Msa0134040:CDS
CGGTTGATTTCTTCTTGTAT+TGG 0.335981 1_3:-65485415 Msa0134040:CDS
GCGACAAAACCAGCGGGTTT+AGG 0.336378 1_3:+65485391 None:intergenic
TCTCAATACTGACAAGAAAT+TGG 0.342826 1_3:-65487407 Msa0134040:five_prime_UTR
GTCACTGTTCTTGCTGTTGT+GGG 0.345979 1_3:-65487330 Msa0134040:five_prime_UTR
AACAGTCTTTGTCGTGAAAC+TGG 0.348067 1_3:+65483476 None:intergenic
CCAAGCCTTCACACTGCCTT+TGG 0.351820 1_3:+65483854 None:intergenic
GCTCTACCATCCTCAAATTC+TGG 0.354909 1_3:-65485724 Msa0134040:CDS
TTTAATACTCACCTTCATTT+GGG 0.357417 1_3:+65486233 None:intergenic
GTTTCCTTGCCCTTGACCTT+TGG 0.362517 1_3:+65483370 None:intergenic
GGTTATACATTTGGTTGTAT+AGG 0.370890 1_3:-65482632 Msa0134040:three_prime_UTR
TGAGAAAGGGGTTATACATT+TGG 0.376965 1_3:-65482641 Msa0134040:three_prime_UTR
ATGAATGGTTGTGCATTAGA+AGG 0.380812 1_3:+65484810 None:intergenic
AGGATTCTCACTTGACGAAC+AGG 0.383262 1_3:+65484903 None:intergenic
ACGATACCGGGAGGCTCGCC+AGG 0.388787 1_3:+65483527 None:intergenic
TAGTTCACCAATGGGATTGA+TGG 0.393674 1_3:-65485593 Msa0134040:CDS
AATATTTGGCCAGGAATTGC+TGG 0.396823 1_3:+65485865 None:intergenic
AGCAGCATGCAGAAGGTGTA+TGG 0.397562 1_3:-65484869 Msa0134040:CDS
AAGATAAAAGTCTTGTTTGT+GGG 0.399676 1_3:-65487188 Msa0134040:five_prime_UTR
TTCAATGATTGCCCGTCAAC+TGG 0.404111 1_3:+65483024 None:intergenic
TGTTTGTTAAGGCACATATA+CGG 0.406272 1_3:+65485788 None:intergenic
GCCAAGGAACTTGTTTGTTA+AGG 0.406883 1_3:+65485777 None:intergenic
AACTGACTCCATTGTGAGCT+TGG 0.411048 1_3:+65482810 None:intergenic
GGTATCGGAAGGAACGGTTT+TGG 0.412783 1_3:-65485691 Msa0134040:CDS
TGACCAACAACTTCTGTTCT+GGG 0.413733 1_3:-65483643 Msa0134040:CDS
AGATCTTGCATTGGCTGCTA+TGG 0.415072 1_3:-65485530 Msa0134040:CDS
TGTGGTGGACCAGCAATTCC+TGG 0.416505 1_3:-65485874 Msa0134040:CDS
CTCGGCAATCCTTTGCCAAT+GGG 0.418291 1_3:-65485652 Msa0134040:CDS
CTCAGACAGATAGTCCTGTT+TGG 0.418832 1_3:-65485489 Msa0134040:CDS
AAGAAATGGTGCTATACATT+TGG 0.420804 1_3:-65485043 Msa0134040:intron
TTTGTTGAATCAGACTCAAC+TGG 0.422317 1_3:-65485995 Msa0134040:intron
CTTACCTTGGAGTAACCATT+TGG 0.423156 1_3:+65484744 None:intergenic
GTTGATGTTTCTGTTGAGAT+TGG 0.423253 1_3:-65484840 Msa0134040:CDS
AGCCTTCACACTGCCTTTGG+AGG 0.424623 1_3:+65483857 None:intergenic
CATCACTCAGAGTCCCCATT+TGG 0.425038 1_3:+65483585 None:intergenic
TTACAGTTGCAACTTGCAAA+TGG 0.427475 1_3:-65482391 Msa0134040:three_prime_UTR
ATACATTTGGTTGTATAGGA+AGG 0.432041 1_3:-65482628 Msa0134040:three_prime_UTR
AATTGAAAACGCTCGTCTAA+AGG 0.433147 1_3:-65485821 Msa0134040:CDS
GCTGAAGCTACGAGAGAAAC+CGG 0.433814 1_3:-65485370 Msa0134040:CDS
TGTATAGGAAGGGTTGCTTA+AGG 0.433860 1_3:-65482617 Msa0134040:three_prime_UTR
TGCTTCATCTGCTAGAAAAT+GGG 0.434105 1_3:-65483615 Msa0134040:CDS
AAAGTGATAGTGACGATTGC+TGG 0.435596 1_3:-65487028 Msa0134040:five_prime_UTR
TCCTTCTGGCTGTATTGTGC+AGG 0.438832 1_3:-65484772 Msa0134040:CDS
TTAGCGCTGCAACATCTGTT+TGG 0.439034 1_3:-65483502 Msa0134040:CDS
TCAAATTCTGGTCTGGAACT+TGG 0.441450 1_3:-65485712 Msa0134040:CDS
AGCTTAGATACTGGTCTGCT+TGG 0.441475 1_3:-65486616 Msa0134040:CDS
AGCGATAACTTTGATCTTGA+AGG 0.443275 1_3:-65486556 Msa0134040:CDS
ATGGAGGGGCAGAGTGAGAT+TGG 0.448707 1_3:-65486652 Msa0134040:CDS
TACAGTTGCAACTTGCAAAT+GGG 0.451118 1_3:-65482390 Msa0134040:three_prime_UTR
TGTCACTGTTCTTGCTGTTG+TGG 0.451766 1_3:-65487331 Msa0134040:five_prime_UTR
AAGATCAAAGTTATCGCTTC+CGG 0.452078 1_3:+65486561 None:intergenic
AGCACTTGTGGAAACTTTGA+TGG 0.452399 1_3:-65485326 Msa0134040:CDS
ACCATCCTCAAATTCTGGTC+TGG 0.453392 1_3:-65485719 Msa0134040:CDS
AAAATGGGACAGCCTCCAAA+TGG 0.457660 1_3:-65483600 Msa0134040:CDS
TCCAAGCCCTTAATCCAAAC+AGG 0.457877 1_3:+65485475 None:intergenic
GAAGCATGTGTGAACCTTGT+TGG 0.458837 1_3:-65487296 Msa0134040:five_prime_UTR
GGTGGTGCTGGCGATGGTGG+TGG 0.459096 1_3:-65482883 Msa0134040:CDS
ACATGCTTCTTCTACCAGCT+TGG 0.460496 1_3:+65483684 None:intergenic
CAAAGTTATCGCTTCCGGAC+CGG 0.465356 1_3:+65486566 None:intergenic
TGGCAAACCAATATCATCAT+TGG 0.472028 1_3:-65485758 Msa0134040:CDS
GTTTGGATTAAGGGCTTGGA+TGG 0.472664 1_3:-65485472 Msa0134040:CDS
TGTTGATTCTGCAAGAAACT+TGG 0.473065 1_3:-65483080 Msa0134040:CDS
AGGAATATCTGGTGATGATC+AGG 0.473094 1_3:-65486536 Msa0134040:CDS
AATCAACAGTTTAGCACTTG+TGG 0.473233 1_3:-65485338 Msa0134040:CDS
CCTCGGCAATCCTTTGCCAA+TGG 0.475104 1_3:-65485653 Msa0134040:CDS
TTGCCAATGGGACTTGATCT+CGG 0.479358 1_3:-65485640 Msa0134040:CDS
GCCTTAACAAACAAGTTCCT+TGG 0.480879 1_3:-65485778 Msa0134040:CDS
TGCAGCGCTAAGCACGATAC+CGG 0.481258 1_3:+65483514 None:intergenic
AGCAAGAACAGTGACACATA+AGG 0.481995 1_3:+65487338 None:intergenic
GCCTTCACACTGCCTTTGGA+GGG 0.482232 1_3:+65483858 None:intergenic
AAGTTCCAGACCAGAATTTG+AGG 0.483874 1_3:+65485714 None:intergenic
GGTGGTGGTTCAAGCTCCCT+CGG 0.484315 1_3:-65485670 Msa0134040:CDS
GCAAGAACAGTGACACATAA+GGG 0.484327 1_3:+65487339 None:intergenic
TCTGGCTACGGCATGTCAAA+TGG 0.484409 1_3:-65482919 Msa0134040:CDS
GATGACCCTGGCGAGCCTCC+CGG 0.485077 1_3:-65483533 Msa0134040:CDS
AGGAAAATGACAAGCTAAGA+GGG 0.487415 1_3:-65485945 Msa0134040:CDS
GTGGTGTATGCACCAGTTGA+CGG 0.489013 1_3:-65483036 Msa0134040:CDS
AAATGGGACAGCCTCCAAAT+GGG 0.490793 1_3:-65483599 Msa0134040:CDS
AGGTCACTTGGATTGAGCAC+TGG 0.495140 1_3:-65483966 Msa0134040:CDS
GCTTAGATACTGGTCTGCTT+GGG 0.495575 1_3:-65486615 Msa0134040:CDS
AGCTGTAGAAGACTTCCTTC+TGG 0.496424 1_3:-65484786 Msa0134040:CDS
TTGCATTGTTGTAGGTCACT+TGG 0.496497 1_3:-65483978 Msa0134040:intron
ACAGTTGATAAGAAAGAAGA+TGG 0.497161 1_3:+65486812 None:intergenic
ACTGTTGATTATTACTATCC+CGG 0.497411 1_3:+65485351 None:intergenic
TTCGTCAAGTGAGAATCCTT+CGG 0.499176 1_3:-65484899 Msa0134040:CDS
CCTGGTATTAGTTCACCAAT+GGG 0.499291 1_3:-65485601 Msa0134040:CDS
CCAAAGGCAGTGTGAAGGCT+TGG 0.499979 1_3:-65483854 Msa0134040:CDS
TTTGCAAGTTGCAACTGTAA+AGG 0.500669 1_3:+65482394 None:intergenic
TGATGTTCAGCTTGAGAGAT+CGG 0.502609 1_3:-65485560 Msa0134040:CDS
GATGAGTATGAAAGCCGGTC+CGG 0.502821 1_3:-65486580 Msa0134040:CDS
TAGGAAGGGTTGCTTAAGGA+AGG 0.502861 1_3:-65482613 Msa0134040:three_prime_UTR
CCCATTGGTGAACTAATACC+AGG 0.505164 1_3:+65485601 None:intergenic
CACTCAGAGTCCCCATTTGG+AGG 0.506413 1_3:+65483588 None:intergenic
AAAGATAAAAGTCTTGTTTG+TGG 0.507627 1_3:-65487189 Msa0134040:five_prime_UTR
ACTGGTGATAGCTTAGATAC+TGG 0.508547 1_3:-65486625 Msa0134040:CDS
TTCACACTGCCTTTGGAGGG+TGG 0.511667 1_3:+65483861 None:intergenic
CAGAGTGAGATTGGTCTCAC+TGG 0.512660 1_3:-65486643 Msa0134040:CDS
AGTCTTCTACAGCTTATGAA+TGG 0.512664 1_3:+65484795 None:intergenic
GGTAATGATCCCTCTGGCTA+CGG 0.514599 1_3:-65482931 Msa0134040:CDS
TATGGATGAATTATTAAAGA+TGG 0.515193 1_3:-65485512 Msa0134040:CDS
TACATTTGGTTGTATAGGAA+GGG 0.515297 1_3:-65482627 Msa0134040:three_prime_UTR
TGAGAACATAATGCTTAGGC+AGG 0.515881 1_3:-65485965 Msa0134040:CDS
GGCTTTGCGATTGTTCCTGA+TGG 0.518088 1_3:-65482952 Msa0134040:CDS
AGTTCACCAATGGGATTGAT+GGG 0.519574 1_3:-65485592 Msa0134040:CDS
TCTTAGCAAGAGACTTGGCT+TGG 0.520649 1_3:-65486295 Msa0134040:CDS
TAGAAGAAGCATGTTGAAGC+TGG 0.521232 1_3:-65483675 Msa0134040:CDS
TCTTCGAACAATATTTGGCC+AGG 0.521570 1_3:+65485856 None:intergenic
GGAGATGGTCGCTCAATGCC+TGG 0.523620 1_3:-65485619 Msa0134040:CDS
GCCTGGTATTAGTTCACCAA+TGG 0.525635 1_3:-65485602 Msa0134040:CDS
AAAGGTGGTGCTGGCGATGG+TGG 0.526742 1_3:-65482886 Msa0134040:CDS
GGTCACTTGGATTGAGCACT+GGG 0.528082 1_3:-65483965 Msa0134040:CDS
TGCAGCTTTGATCTTCTGAA+TGG 0.531714 1_3:+65482759 None:intergenic
GTTCACATTGCCAAAGGTCA+AGG 0.536772 1_3:-65483380 Msa0134040:CDS
GGATACATCTTGCTCGGTGG+TGG 0.536827 1_3:-65483055 Msa0134040:CDS
TTTGCAGCATTGAGCCAAGC+TGG 0.536871 1_3:-65483698 Msa0134040:intron
TGAGTACATAAGAGTCAGAA+TGG 0.536981 1_3:-65486988 Msa0134040:five_prime_UTR
GAGTGTGAACAGTTCCTGTA+AGG 0.537925 1_3:-65486888 Msa0134040:CDS
GGAATCGGTGGAACAAGAAA+TGG 0.540658 1_3:-65485057 Msa0134040:CDS
CAGGAAAATGACAAGCTAAG+AGG 0.541163 1_3:-65485946 Msa0134040:CDS
TACATAAGAGTCAGAATGGA+AGG 0.542507 1_3:-65486984 Msa0134040:five_prime_UTR
TGTATTGGTCCTAAACCCGC+TGG 0.543160 1_3:-65485400 Msa0134040:CDS
ATGAAAGGCTTAGAAGCGAG+TGG 0.543168 1_3:-65483439 Msa0134040:CDS
TTGGATCTTAGCAAGAGACT+TGG 0.543973 1_3:-65486300 Msa0134040:CDS
CCAGAGGGATCATTACCATC+AGG 0.544598 1_3:+65482937 None:intergenic
AACCCCAGAACAGAAGTTGT+TGG 0.545437 1_3:+65483640 None:intergenic
GAATCGTCGAACCCAAATGA+AGG 0.545567 1_3:-65486244 Msa0134040:intron
GGTGGAAGTTTGCTCACAGT+CGG 0.546541 1_3:-65482865 Msa0134040:CDS
TTCTGTAAGCAGCATGCAGA+AGG 0.546904 1_3:-65484876 Msa0134040:CDS
GGCTCTAATAGATCTTGCAT+TGG 0.550601 1_3:-65485539 Msa0134040:CDS
TTTGAGGATGGTAGAGCCAT+GGG 0.555597 1_3:+65485730 None:intergenic
GTGATGATGGTCAGCGCAAG+AGG 0.555699 1_3:-65486507 Msa0134040:CDS
ATCATCATTGGCTAATCCCA+TGG 0.556384 1_3:-65485746 Msa0134040:CDS
GATCAGGATGGTGGTGATGA+TGG 0.558173 1_3:-65486520 Msa0134040:CDS
AATGTGAACCATCTCTTGCA+TGG 0.559591 1_3:+65483394 None:intergenic
TCAAATGGTACTTTACAGAA+AGG 0.561442 1_3:-65482904 Msa0134040:CDS
CCTGATGGTAATGATCCCTC+TGG 0.562249 1_3:-65482937 Msa0134040:CDS
TGGTGTATGCACCAGTTGAC+GGG 0.562286 1_3:-65483035 Msa0134040:CDS
CTACTTCCCATCAATCCCAT+TGG 0.562854 1_3:+65485586 None:intergenic
ATGGGACTTGATCTCGGAGA+TGG 0.563438 1_3:-65485634 Msa0134040:CDS
GGCATGAGAACATAATGCTT+AGG 0.566863 1_3:-65485969 Msa0134040:CDS
GTCTGGAACTTGGTATCGGA+AGG 0.567325 1_3:-65485702 Msa0134040:CDS
CAGAAAGGTGGTGCTGGCGA+TGG 0.567714 1_3:-65482889 Msa0134040:CDS
ATGTGAACCATCTCTTGCAT+GGG 0.567812 1_3:+65483395 None:intergenic
TCCATTGTGAGCTTGGCAGT+TGG 0.569368 1_3:+65482817 None:intergenic
AGATAAAAGTCTTGTTTGTG+GGG 0.569816 1_3:-65487187 Msa0134040:five_prime_UTR
ACCAGATAAAACATCAAGGT+TGG 0.570465 1_3:+65485080 None:intergenic
ATTTGAGGATGGTAGAGCCA+TGG 0.573157 1_3:+65485729 None:intergenic
ACTTTACAGAAAGGTGGTGC+TGG 0.574608 1_3:-65482895 Msa0134040:CDS
TCTGGTCTGGAACTTGGTAT+CGG 0.578760 1_3:-65485706 Msa0134040:CDS
ACCCTCCAAAGGCAGTGTGA+AGG 0.587970 1_3:-65483859 Msa0134040:CDS
TTGGATGGATACATCTTGCT+CGG 0.589147 1_3:-65483061 Msa0134040:CDS
TGGTGGACCCATGCAAGAGA+TGG 0.592249 1_3:-65483402 Msa0134040:CDS
GATTCTGCAAGAAACTTGGA+TGG 0.592935 1_3:-65483076 Msa0134040:CDS
GACCAACAACTTCTGTTCTG+GGG 0.596269 1_3:-65483642 Msa0134040:CDS
GCAGCATGCAGAAGGTGTAT+GGG 0.596526 1_3:-65484868 Msa0134040:CDS
GGAACTCGTGGCGTTGCTGA+TGG 0.596588 1_3:-65482561 Msa0134040:three_prime_UTR
GATGGATCGCCACCCTCCAA+AGG 0.597522 1_3:-65483870 Msa0134040:CDS
GGAACAATCGCAAAGCCTGA+AGG 0.597813 1_3:+65482958 None:intergenic
TCCAGACCAGAATTTGAGGA+TGG 0.597964 1_3:+65485718 None:intergenic
GCAGCGCTAAGCACGATACC+GGG 0.598314 1_3:+65483515 None:intergenic
GGATTCTCACTTGACGAACA+GGG 0.600320 1_3:+65484904 None:intergenic
CAAGTTGCAACTGTAAAGGA+CGG 0.603277 1_3:+65482398 None:intergenic
AGATCAAGTCCCATTGGCAA+AGG 0.604435 1_3:+65485643 None:intergenic
TCTCCGAGATCAAGTCCCAT+TGG 0.604534 1_3:+65485637 None:intergenic
CCAATATGCAACAACTGTGG+TGG 0.604713 1_3:-65485889 Msa0134040:CDS
TAGCATGATGAAAGAAGCAA+TGG 0.604769 1_3:-65485917 Msa0134040:CDS
TGCAGAAGGTGTATGGGCCG+TGG 0.605614 1_3:-65484862 Msa0134040:CDS
GAATGCAAAGACTAACTCGC+AGG 0.606002 1_3:+65482465 None:intergenic
GGTGTGATCATCGTTTGAGA+TGG 0.606434 1_3:+65483813 None:intergenic
GAACTTGGTATCGGAAGGAA+CGG 0.607404 1_3:-65485697 Msa0134040:CDS
TTGTTTGTGGGGTGTTGACA+AGG 0.608143 1_3:-65487176 Msa0134040:five_prime_UTR
TTGAATGTGGTGATGAGTGG+TGG 0.609782 1_3:-65483006 Msa0134040:CDS
ATGATGATATTGGTTTGCCA+AGG 0.610133 1_3:+65485761 None:intergenic
CATGCTGCTTACAGAACCGA+AGG 0.611995 1_3:+65484883 None:intergenic
ACTTGACGAACAGGGACTAG+TGG 0.612660 1_3:+65484912 None:intergenic
CTGAAGCTACGAGAGAAACC+GGG 0.613811 1_3:-65485369 Msa0134040:CDS
ATCATCGTTTGAGATGGAAG+AGG 0.615317 1_3:+65483819 None:intergenic
TAAGCAACGGACGATAGAGT+TGG 0.616243 1_3:+65483920 None:intergenic
TCTTCCTTTCTGATCCAACA+AGG 0.616341 1_3:+65487282 None:intergenic
TGTGGAAACTTTGATGGATG+CGG 0.616357 1_3:-65485320 Msa0134040:intron
TCCAACTGCCAAGCTCACAA+TGG 0.619453 1_3:-65482818 Msa0134040:CDS
TGAATCAGACTCAACTGGAA+AGG 0.621264 1_3:-65485990 Msa0134040:intron
GAGAGGATGAGTATGAAAGC+CGG 0.622277 1_3:-65486585 Msa0134040:CDS
TTCACATTGCCAAAGGTCAA+GGG 0.624942 1_3:-65483379 Msa0134040:CDS
ATGACATGAGAGTTATGACT+AGG 0.627138 1_3:-65483565 Msa0134040:CDS
TATGCCAAATGGTTACTCCA+AGG 0.627451 1_3:-65484748 Msa0134040:intron
ATTTGACATGCCGTAGCCAG+AGG 0.627533 1_3:+65482921 None:intergenic
TTCCACCAGATAAAACATCA+AGG 0.627792 1_3:+65485076 None:intergenic
GCTTCAGCGACAAAACCAGC+GGG 0.631586 1_3:+65485385 None:intergenic
ATTGCCAAAGGTCAAGGGCA+AGG 0.631892 1_3:-65483374 Msa0134040:CDS
TGAATCAAGAAGAGTATGCA+CGG 0.632793 1_3:-65485435 Msa0134040:CDS
GCAATTTCAGATGCATACTG+AGG 0.637345 1_3:-65484949 Msa0134040:intron
TTTGATTAGGAGTGTGTCTG+TGG 0.637619 1_3:+65486473 None:intergenic
TTTGACATGCCGTAGCCAGA+GGG 0.639169 1_3:+65482922 None:intergenic
TGAAAGGCTTAGAAGCGAGT+GGG 0.641966 1_3:-65483438 Msa0134040:CDS
ATTGTGCAGGATATGCCAAA+TGG 0.645079 1_3:-65484759 Msa0134040:CDS
AATGGGACAGCCTCCAAATG+GGG 0.646605 1_3:-65483598 Msa0134040:CDS
AATGGTACTTTACAGAAAGG+TGG 0.653820 1_3:-65482901 Msa0134040:CDS
TTGAGATGGAAGAGGACATG+AGG 0.654253 1_3:+65483827 None:intergenic
GAGATGGTTCACATTGCCAA+AGG 0.654763 1_3:-65483386 Msa0134040:CDS
TCCTGCACAATACAGCCAGA+AGG 0.655286 1_3:+65484771 None:intergenic
CGATACCGGGAGGCTCGCCA+GGG 0.655976 1_3:+65483528 None:intergenic
CTCAACAGAAACATCAACCA+CGG 0.657444 1_3:+65484845 None:intergenic
TGAACCTTGTTGGATCAGAA+AGG 0.657649 1_3:-65487286 Msa0134040:five_prime_UTR
AGCTTCAGCGACAAAACCAG+CGG 0.660319 1_3:+65485384 None:intergenic
TCATTGAATGTGGTGATGAG+TGG 0.663206 1_3:-65483009 Msa0134040:CDS
GCGCTAAGCACGATACCGGG+AGG 0.668252 1_3:+65483518 None:intergenic
CCAAAACCAGAAATAAGCAA+CGG 0.679772 1_3:+65483907 None:intergenic
GATGGATACATCTTGCTCGG+TGG 0.691053 1_3:-65483058 Msa0134040:CDS
CATTGGCAAAGGATTGCCGA+GGG 0.693173 1_3:+65485654 None:intergenic
TCTGCTTGGGAGAATGAGAG+AGG 0.693480 1_3:-65486602 Msa0134040:CDS
GGAAAATGACAAGCTAAGAG+GGG 0.705532 1_3:-65485944 Msa0134040:CDS
ATCTCAAACGATGATCACAC+CGG 0.708202 1_3:-65483811 Msa0134040:intron
TAAAACTTACATTAGCACGA+AGG 0.708878 1_3:+65483336 None:intergenic
TGACGGGCAATCATTGAATG+TGG 0.709763 1_3:-65483019 Msa0134040:CDS
CCATTGGCAAAGGATTGCCG+AGG 0.716261 1_3:+65485653 None:intergenic
TCTGGTGATGATCAGGATGG+TGG 0.723311 1_3:-65486529 Msa0134040:CDS
ATATCTGGTGATGATCAGGA+TGG 0.775557 1_3:-65486532 Msa0134040:CDS
AATCCAATATGCAACAACTG+TGG 0.796420 1_3:-65485892 Msa0134040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATCTTATTTTTCTTA+TGG - chr1_3:65482915-65482934 Msa0134040:CDS 10.0%
!!! AAAAATCTTATTTTTCTTAT+GGG - chr1_3:65482916-65482935 Msa0134040:CDS 10.0%
!!! TTATTAATCTTTATTGTTTT+TGG - chr1_3:65483073-65483092 Msa0134040:CDS 10.0%
!!! AAACAAATATTTTATACTAA+AGG + chr1_3:65485485-65485504 None:intergenic 10.0%
!! TAATGCTATATAAAATATAA+TGG - chr1_3:65485552-65485571 Msa0134040:CDS 10.0%
!!! AAAATCTTATTTTTCTTATG+GGG - chr1_3:65482917-65482936 Msa0134040:CDS 15.0%
!!! TAATCTTATATCTTGTTTTA+TGG - chr1_3:65483049-65483068 Msa0134040:CDS 15.0%
!! AAAAAACAATAAGAGAAAAA+TGG + chr1_3:65483466-65483485 None:intergenic 15.0%
!!! TTTTTTTTTTAGTTTCTTCA+AGG - chr1_3:65483481-65483500 Msa0134040:CDS 15.0%
!! TATTAATACAAATGCAATAA+CGG + chr1_3:65483785-65483804 None:intergenic 15.0%
!! ATCTGTCTAATTATATTAAA+AGG + chr1_3:65485602-65485621 None:intergenic 15.0%
!!! TATTAATTTATAATTAGCCT+AGG - chr1_3:65485752-65485771 Msa0134040:CDS 15.0%
!!! ATTAATTTATAATTAGCCTA+GGG - chr1_3:65485753-65485772 Msa0134040:CDS 15.0%
!!! GTTTTATTAATTTTTTGAAC+TGG - chr1_3:65487169-65487188 Msa0134040:five_prime_UTR 15.0%
!! TAGTTAAGAACTAAAAACAA+TGG + chr1_3:65483424-65483443 None:intergenic 20.0%
!!! TTTTTAGTTCTTAACTAATG+TGG - chr1_3:65483427-65483446 Msa0134040:CDS 20.0%
!! AAAATAAACAAGTCAAATTC+TGG - chr1_3:65483561-65483580 Msa0134040:CDS 20.0%
!!! TGCAGATTTTTAAAAGAAAA+TGG + chr1_3:65483634-65483653 None:intergenic 20.0%
!! GTTTGTAATCTTTGATATTA+TGG + chr1_3:65483736-65483755 None:intergenic 20.0%
!! TATGGATGAATTATTAAAGA+TGG - chr1_3:65484321-65484340 Msa0134040:intron 20.0%
!! ACAAAATTTCCTATCAAAAT+CGG + chr1_3:65484584-65484603 None:intergenic 20.0%
!! TGCTATATCTAAATAGAATA+AGG - chr1_3:65485191-65485210 Msa0134040:intron 20.0%
!! AATAGAATAAGGTTGAAATA+AGG - chr1_3:65485202-65485221 Msa0134040:intron 20.0%
!!! AGTTTTTTTACTTGTTTACT+TGG - chr1_3:65485257-65485276 Msa0134040:intron 20.0%
!!! GTTTTTTTACTTGTTTACTT+GGG - chr1_3:65485258-65485277 Msa0134040:intron 20.0%
!!! TGCATGAAAATTTTAAATCT+TGG - chr1_3:65485406-65485425 Msa0134040:CDS 20.0%
!! CTTGTTAACTACTAATTAAA+TGG - chr1_3:65486092-65486111 Msa0134040:intron 20.0%
!! CTAATTAAATGGTGTAAATT+TGG - chr1_3:65486103-65486122 Msa0134040:intron 20.0%
!! TTTTTGGATTTTCTCTTTCA+GGG - chr1_3:65482390-65482409 Msa0134040:three_prime_UTR 25.0%
!!! AAAGATAAAAGTCTTGTTTG+TGG - chr1_3:65482644-65482663 Msa0134040:three_prime_UTR 25.0%
!!! AAGATAAAAGTCTTGTTTGT+GGG - chr1_3:65482645-65482664 Msa0134040:three_prime_UTR 25.0%
!! ATTCAATCTTTGTCAGTTTT+TGG - chr1_3:65482720-65482739 Msa0134040:three_prime_UTR 25.0%
! TCAAAAACTGAAAAGTTCAT+TGG - chr1_3:65482780-65482799 Msa0134040:CDS 25.0%
!! TTTTGCATTGAACTAGAAAA+GGG + chr1_3:65483000-65483019 None:intergenic 25.0%
!! ATTTTGCATTGAACTAGAAA+AGG + chr1_3:65483001-65483020 None:intergenic 25.0%
!! TTTTCTACAGCAAAGAAAAA+TGG - chr1_3:65483162-65483181 Msa0134040:intron 25.0%
! TTTAATACTCACCTTCATTT+GGG + chr1_3:65483603-65483622 None:intergenic 25.0%
! ATTTAATACTCACCTTCATT+TGG + chr1_3:65483604-65483623 None:intergenic 25.0%
! AAATTACAAAGAAGACTAAG+AGG + chr1_3:65484559-65484578 None:intergenic 25.0%
!!! GTAATTTAACCGATTTTGAT+AGG - chr1_3:65484572-65484591 Msa0134040:intron 25.0%
!!! TACCAAAAAACTGATTTTTC+AGG + chr1_3:65485238-65485257 None:intergenic 25.0%
! TGAAACTTCATATATCTGTT+TGG - chr1_3:65485363-65485382 Msa0134040:CDS 25.0%
! CGTATGTAAGATGTTTATAT+AGG + chr1_3:65485731-65485750 None:intergenic 25.0%
! AAAATAAGTTGCATTGTTGT+AGG - chr1_3:65485847-65485866 Msa0134040:CDS 25.0%
!! ACGTATGATTTGGATTTAAA+CGG + chr1_3:65486528-65486547 None:intergenic 25.0%
! GCTATAGAGAAATCATAAAT+AGG - chr1_3:65486550-65486569 Msa0134040:CDS 25.0%
! AAAAACAAGTTCACAAAACA+AGG + chr1_3:65487147-65487166 None:intergenic 25.0%
!!! TGTTTTGTGAACTTGTTTTT+TGG - chr1_3:65487147-65487166 Msa0134040:five_prime_UTR 25.0%
GAAAATCCAAAAACATTGCA+TGG + chr1_3:65482383-65482402 None:intergenic 30.0%
!! GTTTTTGGATTTTCTCTTTC+AGG - chr1_3:65482389-65482408 Msa0134040:three_prime_UTR 30.0%
TCTCAATACTGACAAGAAAT+TGG - chr1_3:65482426-65482445 Msa0134040:three_prime_UTR 30.0%
CCAGAAAAAACAGATGAAAA+AGG + chr1_3:65482601-65482620 None:intergenic 30.0%
!!! CCTTTTTCATCTGTTTTTTC+TGG - chr1_3:65482598-65482617 Msa0134040:three_prime_UTR 30.0%
!!! TCATCTGTTTTTTCTGGATT+AGG - chr1_3:65482604-65482623 Msa0134040:three_prime_UTR 30.0%
!! AGATAAAAGTCTTGTTTGTG+GGG - chr1_3:65482646-65482665 Msa0134040:three_prime_UTR 30.0%
AATCTGAGTCAAAAAGTCAA+AGG - chr1_3:65482746-65482765 Msa0134040:CDS 30.0%
ATCTGAGTCAAAAAGTCAAA+GGG - chr1_3:65482747-65482766 Msa0134040:CDS 30.0%
! ATTCTTCTCAGACAAGTTTT+AGG - chr1_3:65482885-65482904 Msa0134040:CDS 30.0%
!! ACAGTTGATAAGAAAGAAGA+TGG + chr1_3:65483024-65483043 None:intergenic 30.0%
!! TTGGATTTGATTTTGCATGT+TGG - chr1_3:65483092-65483111 Msa0134040:CDS 30.0%
TTTGATCTTGAAGGAATATC+TGG - chr1_3:65483286-65483305 Msa0134040:intron 30.0%
TCAAGCTCTTGAATTTGATT+AGG + chr1_3:65483376-65483395 None:intergenic 30.0%
! TTTTTAATGTCTCCACAACA+AGG - chr1_3:65483681-65483700 Msa0134040:CDS 30.0%
! TGTTTGTTAAGGCACATATA+CGG + chr1_3:65484048-65484067 None:intergenic 30.0%
! ACTGTTGATTATTACTATCC+CGG + chr1_3:65484485-65484504 None:intergenic 30.0%
CTATATCACTCAGAAAATGT+TGG + chr1_3:65484609-65484628 None:intergenic 30.0%
!! AAGAAATGGTGCTATACATT+TGG - chr1_3:65484790-65484809 Msa0134040:CDS 30.0%
!!! TGCCTGAAAAATCAGTTTTT+TGG - chr1_3:65485233-65485252 Msa0134040:intron 30.0%
AAATTGATACAGATGTCAGA+AGG + chr1_3:65485692-65485711 None:intergenic 30.0%
TATAATTGCAACGAGTATGT+TGG - chr1_3:65485814-65485833 Msa0134040:CDS 30.0%
!!! CTTATTTCTGGTTTTGGATT+TGG - chr1_3:65485932-65485951 Msa0134040:CDS 30.0%
!!! ATGCATGTGATTTGTTTTAC+CGG + chr1_3:65486044-65486063 None:intergenic 30.0%
TAAAACTTACATTAGCACGA+AGG + chr1_3:65486500-65486519 None:intergenic 30.0%
TCTATAGCTAACGTATGATT+TGG + chr1_3:65486538-65486557 None:intergenic 30.0%
TCTCATAAAACCAACTTACA+AGG + chr1_3:65486599-65486618 None:intergenic 30.0%
!!! TGGTTTTATGAGATTGAGTT+AGG - chr1_3:65486606-65486625 Msa0134040:CDS 30.0%
TTATGAGATTGAGTTAGGAT+CGG - chr1_3:65486611-65486630 Msa0134040:CDS 30.0%
TCAAATGGTACTTTACAGAA+AGG - chr1_3:65486929-65486948 Msa0134040:five_prime_UTR 30.0%
TCAGCATTGCATTAACAAAA+TGG + chr1_3:65487120-65487139 None:intergenic 30.0%
!!! ATTTTTTGAACTGGTGAGAA+AGG - chr1_3:65487178-65487197 Msa0134040:five_prime_UTR 30.0%
!!! TTTTTTGAACTGGTGAGAAA+GGG - chr1_3:65487179-65487198 Msa0134040:five_prime_UTR 30.0%
GGTTATACATTTGGTTGTAT+AGG - chr1_3:65487201-65487220 Msa0134040:five_prime_UTR 30.0%
ATACATTTGGTTGTATAGGA+AGG - chr1_3:65487205-65487224 Msa0134040:five_prime_UTR 30.0%
TACATTTGGTTGTATAGGAA+GGG - chr1_3:65487206-65487225 Msa0134040:five_prime_UTR 30.0%
!! GCAAACAAGTTTTCTAGTAA+TGG - chr1_3:65487322-65487341 Msa0134040:five_prime_UTR 30.0%
!! AACAAGTTTTCTAGTAATGG+TGG - chr1_3:65487325-65487344 Msa0134040:five_prime_UTR 30.0%
! TCTCTTCCATGCAATGTTTT+TGG - chr1_3:65482374-65482393 Msa0134040:three_prime_UTR 35.0%
CAGATGAAAAAGGTTACAAC+AGG + chr1_3:65482591-65482610 None:intergenic 35.0%
TGAGTACATAAGAGTCAGAA+TGG - chr1_3:65482845-65482864 Msa0134040:CDS 35.0%
TACATAAGAGTCAGAATGGA+AGG - chr1_3:65482849-65482868 Msa0134040:CDS 35.0%
TCTACAGCAAAGAAAAATGG+AGG - chr1_3:65483165-65483184 Msa0134040:intron 35.0%
CTACAGCAAAGAAAAATGGA+GGG - chr1_3:65483166-65483185 Msa0134040:intron 35.0%
TACAGCAAAGAAAAATGGAG+GGG - chr1_3:65483167-65483186 Msa0134040:intron 35.0%
AAGATCAAAGTTATCGCTTC+CGG + chr1_3:65483275-65483294 None:intergenic 35.0%
AGCGATAACTTTGATCTTGA+AGG - chr1_3:65483277-65483296 Msa0134040:intron 35.0%
!!! CTTTGTTTTTCATCAGGATG+AGG + chr1_3:65483512-65483531 None:intergenic 35.0%
CTCATCCTGATGAAAAACAA+AGG - chr1_3:65483510-65483529 Msa0134040:CDS 35.0%
TCCTGATGAAAAACAAAGGT+TGG - chr1_3:65483514-65483533 Msa0134040:CDS 35.0%
!!! TCCAACCTTTGTTTTTCATC+AGG + chr1_3:65483518-65483537 None:intergenic 35.0%
TGGAGAATCACATACAAAAG+CGG + chr1_3:65483716-65483735 None:intergenic 35.0%
TTTGTTGAATCAGACTCAAC+TGG - chr1_3:65483838-65483857 Msa0134040:CDS 35.0%
AGGAAAATGACAAGCTAAGA+GGG - chr1_3:65483888-65483907 Msa0134040:CDS 35.0%
TAGCATGATGAAAGAAGCAA+TGG - chr1_3:65483916-65483935 Msa0134040:CDS 35.0%
AATCCAATATGCAACAACTG+TGG - chr1_3:65483941-65483960 Msa0134040:CDS 35.0%
! GAGCGTTTTCAATTCTAATC+TGG + chr1_3:65484006-65484025 None:intergenic 35.0%
AATTGAAAACGCTCGTCTAA+AGG - chr1_3:65484012-65484031 Msa0134040:intron 35.0%
!! ATGATGATATTGGTTTGCCA+AGG + chr1_3:65484075-65484094 None:intergenic 35.0%
TGGCAAACCAATATCATCAT+TGG - chr1_3:65484075-65484094 Msa0134040:intron 35.0%
!! GGATTAGCCAATGATGATAT+TGG + chr1_3:65484085-65484104 None:intergenic 35.0%
AGATAGTCCTGTTTGGATTA+AGG - chr1_3:65484351-65484370 Msa0134040:intron 35.0%
GATAGTCCTGTTTGGATTAA+GGG - chr1_3:65484352-65484371 Msa0134040:intron 35.0%
! TGAATCAAGAAGAGTATGCA+CGG - chr1_3:65484398-65484417 Msa0134040:intron 35.0%
! CGGTTGATTTCTTCTTGTAT+TGG - chr1_3:65484418-65484437 Msa0134040:intron 35.0%
AATCAACAGTTTAGCACTTG+TGG - chr1_3:65484495-65484514 Msa0134040:intron 35.0%
ATTACCATCAAAGTTTCTGC+AGG - chr1_3:65484642-65484661 Msa0134040:intron 35.0%
ACCAGATAAAACATCAAGGT+TGG + chr1_3:65484756-65484775 None:intergenic 35.0%
! AACCTTGATGTTTTATCTGG+TGG - chr1_3:65484755-65484774 Msa0134040:CDS 35.0%
TTCCACCAGATAAAACATCA+AGG + chr1_3:65484760-65484779 None:intergenic 35.0%
! GATGTTTTATCTGGTGGAAT+CGG - chr1_3:65484761-65484780 Msa0134040:CDS 35.0%
! GTTGATGTTTCTGTTGAGAT+TGG - chr1_3:65484993-65485012 Msa0134040:intron 35.0%
ATGAATGGTTGTGCATTAGA+AGG + chr1_3:65485026-65485045 None:intergenic 35.0%
AGTCTTCTACAGCTTATGAA+TGG + chr1_3:65485041-65485060 None:intergenic 35.0%
ACTTGTATTAGCACTTACCT+TGG + chr1_3:65485105-65485124 None:intergenic 35.0%
TCCTAGAGATTAGTGAATCA+AGG - chr1_3:65485323-65485342 Msa0134040:CDS 35.0%
AAATGTTGACATAATGCCCT+AGG + chr1_3:65485772-65485791 None:intergenic 35.0%
CCAAAACCAGAAATAAGCAA+CGG + chr1_3:65485929-65485948 None:intergenic 35.0%
TGCTTCATCTGCTAGAAAAT+GGG - chr1_3:65486218-65486237 Msa0134040:intron 35.0%
ATGACATGAGAGTTATGACT+AGG - chr1_3:65486268-65486287 Msa0134040:CDS 35.0%
! TTGATTTTCTGCGTGATGAA+AGG - chr1_3:65486379-65486398 Msa0134040:intron 35.0%
AAACAATCCTCCTTGTAAGT+TGG - chr1_3:65486586-65486605 Msa0134040:CDS 35.0%
CATAAAACCAACTTACAAGG+AGG + chr1_3:65486596-65486615 None:intergenic 35.0%
!! ATTGAGTTAGGATCGGTTTT+GGG - chr1_3:65486618-65486637 Msa0134040:CDS 35.0%
CCTGCAAAAACAAAGATTCT+TGG + chr1_3:65486709-65486728 None:intergenic 35.0%
!!! CCAAGAATCTTTGTTTTTGC+AGG - chr1_3:65486706-65486725 Msa0134040:intron 35.0%
!! TGTTGATTCTGCAAGAAACT+TGG - chr1_3:65486753-65486772 Msa0134040:intron 35.0%
AATGGTACTTTACAGAAAGG+TGG - chr1_3:65486932-65486951 Msa0134040:five_prime_UTR 35.0%
GAAGACTATTCACCAGAATT+TGG + chr1_3:65486997-65487016 None:intergenic 35.0%
! TTTTTGAACTGGTGAGAAAG+GGG - chr1_3:65487180-65487199 Msa0134040:five_prime_UTR 35.0%
TGAGAAAGGGGTTATACATT+TGG - chr1_3:65487192-65487211 Msa0134040:five_prime_UTR 35.0%
!! GTTTTCTAGTAATGGTGGTT+CGG - chr1_3:65487330-65487349 Msa0134040:five_prime_UTR 35.0%
!! TTTTCTAGTAATGGTGGTTC+GGG - chr1_3:65487331-65487350 Msa0134040:five_prime_UTR 35.0%
! CAGAACAGACACATATGTTT+TGG + chr1_3:65487406-65487425 None:intergenic 35.0%
TTTGCAAGTTGCAACTGTAA+AGG + chr1_3:65487442-65487461 None:intergenic 35.0%
TTACAGTTGCAACTTGCAAA+TGG - chr1_3:65487442-65487461 Msa0134040:five_prime_UTR 35.0%
TACAGTTGCAACTTGCAAAT+GGG - chr1_3:65487443-65487462 Msa0134040:five_prime_UTR 35.0%
GCAAGAACAGTGACACATAA+GGG + chr1_3:65482497-65482516 None:intergenic 40.0%
AGCAAGAACAGTGACACATA+AGG + chr1_3:65482498-65482517 None:intergenic 40.0%
TGAACCTTGTTGGATCAGAA+AGG - chr1_3:65482547-65482566 Msa0134040:three_prime_UTR 40.0%
TCTTCCTTTCTGATCCAACA+AGG + chr1_3:65482554-65482573 None:intergenic 40.0%
CAAAAAGTCAAAGGGTTGTG+TGG - chr1_3:65482755-65482774 Msa0134040:CDS 40.0%
! AAAGTGATAGTGACGATTGC+TGG - chr1_3:65482805-65482824 Msa0134040:CDS 40.0%
ACTGGTGATAGCTTAGATAC+TGG - chr1_3:65483208-65483227 Msa0134040:intron 40.0%
! AGGAATATCTGGTGATGATC+AGG - chr1_3:65483297-65483316 Msa0134040:intron 40.0%
! ATATCTGGTGATGATCAGGA+TGG - chr1_3:65483301-65483320 Msa0134040:intron 40.0%
! TTTGATTAGGAGTGTGTCTG+TGG + chr1_3:65483363-65483382 None:intergenic 40.0%
TTGGATCTTAGCAAGAGACT+TGG - chr1_3:65483533-65483552 Msa0134040:CDS 40.0%
ATCACATACAAAAGCGGCTT+AGG + chr1_3:65483710-65483729 None:intergenic 40.0%
TGAATCAGACTCAACTGGAA+AGG - chr1_3:65483843-65483862 Msa0134040:CDS 40.0%
GGCATGAGAACATAATGCTT+AGG - chr1_3:65483864-65483883 Msa0134040:CDS 40.0%
TGAGAACATAATGCTTAGGC+AGG - chr1_3:65483868-65483887 Msa0134040:CDS 40.0%
CAGGAAAATGACAAGCTAAG+AGG - chr1_3:65483887-65483906 Msa0134040:CDS 40.0%
GGAAAATGACAAGCTAAGAG+GGG - chr1_3:65483889-65483908 Msa0134040:CDS 40.0%
AATATTTGGCCAGGAATTGC+TGG + chr1_3:65483971-65483990 None:intergenic 40.0%
TCTTCGAACAATATTTGGCC+AGG + chr1_3:65483980-65483999 None:intergenic 40.0%
GGTGCTCTTCGAACAATATT+TGG + chr1_3:65483985-65484004 None:intergenic 40.0%
GCCTTAACAAACAAGTTCCT+TGG - chr1_3:65484055-65484074 Msa0134040:intron 40.0%
! GCCAAGGAACTTGTTTGTTA+AGG + chr1_3:65484059-65484078 None:intergenic 40.0%
! ATCATCATTGGCTAATCCCA+TGG - chr1_3:65484087-65484106 Msa0134040:intron 40.0%
AAGTTCCAGACCAGAATTTG+AGG + chr1_3:65484122-65484141 None:intergenic 40.0%
! TCAAATTCTGGTCTGGAACT+TGG - chr1_3:65484121-65484140 Msa0134040:intron 40.0%
CCTGGTATTAGTTCACCAAT+GGG - chr1_3:65484232-65484251 Msa0134040:intron 40.0%
TAGTTCACCAATGGGATTGA+TGG - chr1_3:65484240-65484259 Msa0134040:intron 40.0%
AGTTCACCAATGGGATTGAT+GGG - chr1_3:65484241-65484260 Msa0134040:intron 40.0%
TGATGTTCAGCTTGAGAGAT+CGG - chr1_3:65484273-65484292 Msa0134040:intron 40.0%
! GGCTCTAATAGATCTTGCAT+TGG - chr1_3:65484294-65484313 Msa0134040:intron 40.0%
AGCACTTGTGGAAACTTTGA+TGG - chr1_3:65484507-65484526 Msa0134040:intron 40.0%
! TGTGGAAACTTTGATGGATG+CGG - chr1_3:65484513-65484532 Msa0134040:intron 40.0%
CAAACCTGCAGAAACTTTGA+TGG + chr1_3:65484649-65484668 None:intergenic 40.0%
! GCCAACCTTGATGTTTTATC+TGG - chr1_3:65484752-65484771 Msa0134040:CDS 40.0%
! AAGTTTGCTTCAATGTGCCT+TGG - chr1_3:65484837-65484856 Msa0134040:CDS 40.0%
TAGTAAGCTCTTGCAAACCA+AGG + chr1_3:65484857-65484876 None:intergenic 40.0%
!! TTGGTTTGCAAGAGCTTACT+AGG - chr1_3:65484856-65484875 Msa0134040:CDS 40.0%
GCAATTTCAGATGCATACTG+AGG - chr1_3:65484884-65484903 Msa0134040:CDS 40.0%
TTCGTCAAGTGAGAATCCTT+CGG - chr1_3:65484934-65484953 Msa0134040:CDS 40.0%
CTCAACAGAAACATCAACCA+CGG + chr1_3:65484991-65485010 None:intergenic 40.0%
ATTGTGCAGGATATGCCAAA+TGG - chr1_3:65485074-65485093 Msa0134040:CDS 40.0%
TATGCCAAATGGTTACTCCA+AGG - chr1_3:65485085-65485104 Msa0134040:CDS 40.0%
CTTACCTTGGAGTAACCATT+TGG + chr1_3:65485092-65485111 None:intergenic 40.0%
!! ATCTCTAGGAGTACTAGAAG+TGG + chr1_3:65485313-65485332 None:intergenic 40.0%
GCCTTGATTCACTAATCTCT+AGG + chr1_3:65485327-65485346 None:intergenic 40.0%
CTATAATCTGCCAAGTGTGT+CGG - chr1_3:65485653-65485672 Msa0134040:CDS 40.0%
TATAATCTGCCAAGTGTGTC+GGG - chr1_3:65485654-65485673 Msa0134040:CDS 40.0%
TACAGATGTCAGAAGGATAG+AGG + chr1_3:65485685-65485704 None:intergenic 40.0%
TTGCATTGTTGTAGGTCACT+TGG - chr1_3:65485855-65485874 Msa0134040:CDS 40.0%
TATCGTCCGTTGCTTATTTC+TGG - chr1_3:65485920-65485939 Msa0134040:CDS 40.0%
!!! CCGTTGCTTATTTCTGGTTT+TGG - chr1_3:65485926-65485945 Msa0134040:CDS 40.0%
! ATCATCGTTTGAGATGGAAG+AGG + chr1_3:65486017-65486036 None:intergenic 40.0%
ATCTCAAACGATGATCACAC+CGG - chr1_3:65486022-65486041 Msa0134040:intron 40.0%
! TAGAAGAAGCATGTTGAAGC+TGG - chr1_3:65486158-65486177 Msa0134040:intron 40.0%
ATGACCAACAACTTCTGTTC+TGG - chr1_3:65486189-65486208 Msa0134040:intron 40.0%
TGACCAACAACTTCTGTTCT+GGG - chr1_3:65486190-65486209 Msa0134040:intron 40.0%
GTGCTTCATCTGCTAGAAAA+TGG - chr1_3:65486217-65486236 Msa0134040:intron 40.0%
!! AGGAAAAATGTTGATGACCC+TGG - chr1_3:65486288-65486307 Msa0134040:CDS 40.0%
AACAGTCTTTGTCGTGAAAC+TGG + chr1_3:65486360-65486379 None:intergenic 40.0%
! GAGTGGGACATTTTGTCTAA+TGG - chr1_3:65486411-65486430 Msa0134040:intron 40.0%
! TGGGACATTTTGTCTAATGG+TGG - chr1_3:65486414-65486433 Msa0134040:intron 40.0%
ATGTGAACCATCTCTTGCAT+GGG + chr1_3:65486441-65486460 None:intergenic 40.0%
AATGTGAACCATCTCTTGCA+TGG + chr1_3:65486442-65486461 None:intergenic 40.0%
TTCACATTGCCAAAGGTCAA+GGG - chr1_3:65486454-65486473 Msa0134040:intron 40.0%
!! GATTGAGTTAGGATCGGTTT+TGG - chr1_3:65486617-65486636 Msa0134040:CDS 40.0%
GATTCTGCAAGAAACTTGGA+TGG - chr1_3:65486757-65486776 Msa0134040:intron 40.0%
TTGGATGGATACATCTTGCT+CGG - chr1_3:65486772-65486791 Msa0134040:intron 40.0%
! TCATTGAATGTGGTGATGAG+TGG - chr1_3:65486824-65486843 Msa0134040:CDS 40.0%
! TGCAGCTTTGATCTTCTGAA+TGG + chr1_3:65487077-65487096 None:intergenic 40.0%
TGTATAGGAAGGGTTGCTTA+AGG - chr1_3:65487216-65487235 Msa0134040:five_prime_UTR 40.0%
CAAGTTGCAACTGTAAAGGA+CGG + chr1_3:65487438-65487457 None:intergenic 40.0%
!! TGTCACTGTTCTTGCTGTTG+TGG - chr1_3:65482502-65482521 Msa0134040:three_prime_UTR 45.0%
!! GTCACTGTTCTTGCTGTTGT+GGG - chr1_3:65482503-65482522 Msa0134040:three_prime_UTR 45.0%
GAAGCATGTGTGAACCTTGT+TGG - chr1_3:65482537-65482556 Msa0134040:three_prime_UTR 45.0%
!! TTGTTTGTGGGGTGTTGACA+AGG - chr1_3:65482657-65482676 Msa0134040:three_prime_UTR 45.0%
GAGTGTGAACAGTTCCTGTA+AGG - chr1_3:65482945-65482964 Msa0134040:CDS 45.0%
GACAAGTCTTGCAACCTTAC+AGG + chr1_3:65482962-65482981 None:intergenic 45.0%
! AGCTTAGATACTGGTCTGCT+TGG - chr1_3:65483217-65483236 Msa0134040:intron 45.0%
! GCTTAGATACTGGTCTGCTT+GGG - chr1_3:65483218-65483237 Msa0134040:intron 45.0%
GAGAGGATGAGTATGAAAGC+CGG - chr1_3:65483248-65483267 Msa0134040:intron 45.0%
TCTTAGCAAGAGACTTGGCT+TGG - chr1_3:65483538-65483557 Msa0134040:CDS 45.0%
GAATCGTCGAACCCAAATGA+AGG - chr1_3:65483589-65483608 Msa0134040:CDS 45.0%
CCACCACAGTTGTTGCATAT+TGG + chr1_3:65483947-65483966 None:intergenic 45.0%
CCAATATGCAACAACTGTGG+TGG - chr1_3:65483944-65483963 Msa0134040:CDS 45.0%
TTTGAGGATGGTAGAGCCAT+GGG + chr1_3:65484106-65484125 None:intergenic 45.0%
ATTTGAGGATGGTAGAGCCA+TGG + chr1_3:65484107-65484126 None:intergenic 45.0%
GCTCTACCATCCTCAAATTC+TGG - chr1_3:65484109-65484128 Msa0134040:intron 45.0%
ACCATCCTCAAATTCTGGTC+TGG - chr1_3:65484114-65484133 Msa0134040:intron 45.0%
TCCAGACCAGAATTTGAGGA+TGG + chr1_3:65484118-65484137 None:intergenic 45.0%
! TCTGGTCTGGAACTTGGTAT+CGG - chr1_3:65484127-65484146 Msa0134040:intron 45.0%
! GAACTTGGTATCGGAAGGAA+CGG - chr1_3:65484136-65484155 Msa0134040:intron 45.0%
AGATCAAGTCCCATTGGCAA+AGG + chr1_3:65484193-65484212 None:intergenic 45.0%
TTGCCAATGGGACTTGATCT+CGG - chr1_3:65484193-65484212 Msa0134040:intron 45.0%
GCCTGGTATTAGTTCACCAA+TGG - chr1_3:65484231-65484250 Msa0134040:intron 45.0%
CCCATTGGTGAACTAATACC+AGG + chr1_3:65484235-65484254 None:intergenic 45.0%
CTACTTCCCATCAATCCCAT+TGG + chr1_3:65484250-65484269 None:intergenic 45.0%
!! AGATCTTGCATTGGCTGCTA+TGG - chr1_3:65484303-65484322 Msa0134040:intron 45.0%
CTCAGACAGATAGTCCTGTT+TGG - chr1_3:65484344-65484363 Msa0134040:intron 45.0%
TCCTGTTTGGATTAAGGGCT+TGG - chr1_3:65484357-65484376 Msa0134040:intron 45.0%
TCCAAGCCCTTAATCCAAAC+AGG + chr1_3:65484361-65484380 None:intergenic 45.0%
GTTTGGATTAAGGGCTTGGA+TGG - chr1_3:65484361-65484380 Msa0134040:intron 45.0%
! GTTTTATCTGGTGGAATCGG+TGG - chr1_3:65484764-65484783 Msa0134040:CDS 45.0%
GGAATCGGTGGAACAAGAAA+TGG - chr1_3:65484776-65484795 Msa0134040:CDS 45.0%
GGATTCTCACTTGACGAACA+GGG + chr1_3:65484932-65484951 None:intergenic 45.0%
AGGATTCTCACTTGACGAAC+AGG + chr1_3:65484933-65484952 None:intergenic 45.0%
TTCTGTAAGCAGCATGCAGA+AGG - chr1_3:65484957-65484976 Msa0134040:intron 45.0%
AGCTGTAGAAGACTTCCTTC+TGG - chr1_3:65485047-65485066 Msa0134040:CDS 45.0%
TGTACGAGACCAATATGACC+TGG - chr1_3:65485512-65485531 Msa0134040:CDS 45.0%
GAACTGGATCCAGGTCATAT+TGG + chr1_3:65485524-65485543 None:intergenic 45.0%
TAGCATTAGCAGCAGAGAAC+TGG + chr1_3:65485540-65485559 None:intergenic 45.0%
TAAGCAACGGACGATAGAGT+TGG + chr1_3:65485916-65485935 None:intergenic 45.0%
TTGGATTTGGCGCTCATAGA+TGG - chr1_3:65485945-65485964 Msa0134040:CDS 45.0%
TTGAGATGGAAGAGGACATG+AGG + chr1_3:65486009-65486028 None:intergenic 45.0%
GGTGTGATCATCGTTTGAGA+TGG + chr1_3:65486023-65486042 None:intergenic 45.0%
ACATGCTTCTTCTACCAGCT+TGG + chr1_3:65486152-65486171 None:intergenic 45.0%
GACCAACAACTTCTGTTCTG+GGG - chr1_3:65486191-65486210 Msa0134040:intron 45.0%
AACCCCAGAACAGAAGTTGT+TGG + chr1_3:65486196-65486215 None:intergenic 45.0%
AAAATGGGACAGCCTCCAAA+TGG - chr1_3:65486233-65486252 Msa0134040:intron 45.0%
AAATGGGACAGCCTCCAAAT+GGG - chr1_3:65486234-65486253 Msa0134040:intron 45.0%
TTAGCGCTGCAACATCTGTT+TGG - chr1_3:65486331-65486350 Msa0134040:CDS 45.0%
ATGAAAGGCTTAGAAGCGAG+TGG - chr1_3:65486394-65486413 Msa0134040:intron 45.0%
TGAAAGGCTTAGAAGCGAGT+GGG - chr1_3:65486395-65486414 Msa0134040:intron 45.0%
GAGATGGTTCACATTGCCAA+AGG - chr1_3:65486447-65486466 Msa0134040:intron 45.0%
GTTCACATTGCCAAAGGTCA+AGG - chr1_3:65486453-65486472 Msa0134040:intron 45.0%
TTCAATGATTGCCCGTCAAC+TGG + chr1_3:65486812-65486831 None:intergenic 45.0%
! TGACGGGCAATCATTGAATG+TGG - chr1_3:65486814-65486833 Msa0134040:CDS 45.0%
! TTGAATGTGGTGATGAGTGG+TGG - chr1_3:65486827-65486846 Msa0134040:CDS 45.0%
ACTTTACAGAAAGGTGGTGC+TGG - chr1_3:65486938-65486957 Msa0134040:five_prime_UTR 45.0%
CACAGTCGGATTCCAAATTC+TGG - chr1_3:65486982-65487001 Msa0134040:five_prime_UTR 45.0%
! AACTGACTCCATTGTGAGCT+TGG + chr1_3:65487026-65487045 None:intergenic 45.0%
TAGGAAGGGTTGCTTAAGGA+AGG - chr1_3:65487220-65487239 Msa0134040:five_prime_UTR 45.0%
CAAGAACGAACCGCGAAAAA+AGG - chr1_3:65487251-65487270 Msa0134040:five_prime_UTR 45.0%
GAATGCAAAGACTAACTCGC+AGG + chr1_3:65487371-65487390 None:intergenic 45.0%
!! CAGAGTGAGATTGGTCTCAC+TGG - chr1_3:65483190-65483209 Msa0134040:intron 50.0%
TCTGCTTGGGAGAATGAGAG+AGG - chr1_3:65483231-65483250 Msa0134040:intron 50.0%
GATGAGTATGAAAGCCGGTC+CGG - chr1_3:65483253-65483272 Msa0134040:intron 50.0%
CAAAGTTATCGCTTCCGGAC+CGG + chr1_3:65483270-65483289 None:intergenic 50.0%
! TCTGGTGATGATCAGGATGG+TGG - chr1_3:65483304-65483323 Msa0134040:intron 50.0%
! GATCAGGATGGTGGTGATGA+TGG - chr1_3:65483313-65483332 Msa0134040:intron 50.0%
CGATCTGAGTTGCGGCATTA+AGG - chr1_3:65483658-65483677 Msa0134040:CDS 50.0%
! GTCTGGAACTTGGTATCGGA+AGG - chr1_3:65484131-65484150 Msa0134040:intron 50.0%
!! GGTATCGGAAGGAACGGTTT+TGG - chr1_3:65484142-65484161 Msa0134040:intron 50.0%
!! ATCGGAAGGAACGGTTTTGG+TGG - chr1_3:65484145-65484164 Msa0134040:intron 50.0%
CATTGGCAAAGGATTGCCGA+GGG + chr1_3:65484182-65484201 None:intergenic 50.0%
CTCGGCAATCCTTTGCCAAT+GGG - chr1_3:65484181-65484200 Msa0134040:intron 50.0%
TCTCCGAGATCAAGTCCCAT+TGG + chr1_3:65484199-65484218 None:intergenic 50.0%
ATGGGACTTGATCTCGGAGA+TGG - chr1_3:65484199-65484218 Msa0134040:intron 50.0%
! TGTATTGGTCCTAAACCCGC+TGG - chr1_3:65484433-65484452 Msa0134040:intron 50.0%
AGCTTCAGCGACAAAACCAG+CGG + chr1_3:65484452-65484471 None:intergenic 50.0%
GCTGAAGCTACGAGAGAAAC+CGG - chr1_3:65484463-65484482 Msa0134040:intron 50.0%
CTGAAGCTACGAGAGAAACC+GGG - chr1_3:65484464-65484483 Msa0134040:intron 50.0%
ACTTGACGAACAGGGACTAG+TGG + chr1_3:65484924-65484943 None:intergenic 50.0%
! CATGCTGCTTACAGAACCGA+AGG + chr1_3:65484953-65484972 None:intergenic 50.0%
! AGCAGCATGCAGAAGGTGTA+TGG - chr1_3:65484964-65484983 Msa0134040:intron 50.0%
! GCAGCATGCAGAAGGTGTAT+GGG - chr1_3:65484965-65484984 Msa0134040:intron 50.0%
! TCCTTCTGGCTGTATTGTGC+AGG - chr1_3:65485061-65485080 Msa0134040:CDS 50.0%
TCCTGCACAATACAGCCAGA+AGG + chr1_3:65485065-65485084 None:intergenic 50.0%
AGGTCACTTGGATTGAGCAC+TGG - chr1_3:65485867-65485886 Msa0134040:CDS 50.0%
GGTCACTTGGATTGAGCACT+GGG - chr1_3:65485868-65485887 Msa0134040:CDS 50.0%
! TTTGCAGCATTGAGCCAAGC+TGG - chr1_3:65486135-65486154 Msa0134040:intron 50.0%
AATGGGACAGCCTCCAAATG+GGG - chr1_3:65486235-65486254 Msa0134040:intron 50.0%
CATCACTCAGAGTCCCCATT+TGG + chr1_3:65486251-65486270 None:intergenic 50.0%
ATTGCCAAAGGTCAAGGGCA+AGG - chr1_3:65486459-65486478 Msa0134040:CDS 50.0%
GTTTCCTTGCCCTTGACCTT+TGG + chr1_3:65486466-65486485 None:intergenic 50.0%
GATGGATACATCTTGCTCGG+TGG - chr1_3:65486775-65486794 Msa0134040:intron 50.0%
GTGGTGTATGCACCAGTTGA+CGG - chr1_3:65486797-65486816 Msa0134040:intron 50.0%
TGGTGTATGCACCAGTTGAC+GGG - chr1_3:65486798-65486817 Msa0134040:intron 50.0%
GGAACAATCGCAAAGCCTGA+AGG + chr1_3:65486878-65486897 None:intergenic 50.0%
GGCTTTGCGATTGTTCCTGA+TGG - chr1_3:65486881-65486900 Msa0134040:CDS 50.0%
CCAGAGGGATCATTACCATC+AGG + chr1_3:65486899-65486918 None:intergenic 50.0%
! CCTGATGGTAATGATCCCTC+TGG - chr1_3:65486896-65486915 Msa0134040:CDS 50.0%
GGTAATGATCCCTCTGGCTA+CGG - chr1_3:65486902-65486921 Msa0134040:CDS 50.0%
TTTGACATGCCGTAGCCAGA+GGG + chr1_3:65486914-65486933 None:intergenic 50.0%
ATTTGACATGCCGTAGCCAG+AGG + chr1_3:65486915-65486934 None:intergenic 50.0%
TCTGGCTACGGCATGTCAAA+TGG - chr1_3:65486914-65486933 Msa0134040:exon 50.0%
! GGTGGAAGTTTGCTCACAGT+CGG - chr1_3:65486968-65486987 Msa0134040:five_prime_UTR 50.0%
TCCAACTGCCAAGCTCACAA+TGG - chr1_3:65487015-65487034 Msa0134040:five_prime_UTR 50.0%
TCCATTGTGAGCTTGGCAGT+TGG + chr1_3:65487019-65487038 None:intergenic 50.0%
ACCGCGAAAAAAGGAACTCG+TGG - chr1_3:65487260-65487279 Msa0134040:five_prime_UTR 50.0%
!!! GCCACGAGTTCCTTTTTTCG+CGG + chr1_3:65487264-65487283 None:intergenic 50.0%
ATGGAGGGGCAGAGTGAGAT+TGG - chr1_3:65483181-65483200 Msa0134040:intron 55.0%
!! GTGATGATGGTCAGCGCAAG+AGG - chr1_3:65483326-65483345 Msa0134040:intron 55.0%
TGCAGTCGCGATCTGAGTTG+CGG - chr1_3:65483650-65483669 Msa0134040:CDS 55.0%
CGGCTTAGGCAACCTTGTTG+TGG + chr1_3:65483696-65483715 None:intergenic 55.0%
!! TGTGGTGGACCAGCAATTCC+TGG - chr1_3:65483959-65483978 Msa0134040:CDS 55.0%
!! GGAAGGAACGGTTTTGGTGG+TGG - chr1_3:65484148-65484167 Msa0134040:intron 55.0%
CCATTGGCAAAGGATTGCCG+AGG + chr1_3:65484183-65484202 None:intergenic 55.0%
CCTCGGCAATCCTTTGCCAA+TGG - chr1_3:65484180-65484199 Msa0134040:intron 55.0%
! GCGACAAAACCAGCGGGTTT+AGG + chr1_3:65484445-65484464 None:intergenic 55.0%
GCTTCAGCGACAAAACCAGC+GGG + chr1_3:65484451-65484470 None:intergenic 55.0%
AGCAGCAGAGAACTGGATCC+AGG + chr1_3:65485533-65485552 None:intergenic 55.0%
GAGGTGAATCCCGACACACT+TGG + chr1_3:65485666-65485685 None:intergenic 55.0%
! TTCACACTGCCTTTGGAGGG+TGG + chr1_3:65485975-65485994 None:intergenic 55.0%
ACCCTCCAAAGGCAGTGTGA+AGG - chr1_3:65485974-65485993 Msa0134040:CDS 55.0%
GCCTTCACACTGCCTTTGGA+GGG + chr1_3:65485978-65485997 None:intergenic 55.0%
AGCCTTCACACTGCCTTTGG+AGG + chr1_3:65485979-65485998 None:intergenic 55.0%
CCAAGCCTTCACACTGCCTT+TGG + chr1_3:65485982-65486001 None:intergenic 55.0%
CCAAAGGCAGTGTGAAGGCT+TGG - chr1_3:65485979-65485998 Msa0134040:CDS 55.0%
CACTCAGAGTCCCCATTTGG+AGG + chr1_3:65486248-65486267 None:intergenic 55.0%
TGCAGCGCTAAGCACGATAC+CGG + chr1_3:65486322-65486341 None:intergenic 55.0%
! TGGTGGACCCATGCAAGAGA+TGG - chr1_3:65486431-65486450 Msa0134040:intron 55.0%
! GGATACATCTTGCTCGGTGG+TGG - chr1_3:65486778-65486797 Msa0134040:intron 55.0%
! GGTGGTGGTTCAAGCTCCCT+CGG - chr1_3:65484163-65484182 Msa0134040:intron 60.0%
GGAGATGGTCGCTCAATGCC+TGG - chr1_3:65484214-65484233 Msa0134040:intron 60.0%
! TGCAGAAGGTGTATGGGCCG+TGG - chr1_3:65484971-65484990 Msa0134040:intron 60.0%
GATGGATCGCCACCCTCCAA+AGG - chr1_3:65485963-65485982 Msa0134040:CDS 60.0%
GCAGCGCTAAGCACGATACC+GGG + chr1_3:65486321-65486340 None:intergenic 60.0%
!! CAGAAAGGTGGTGCTGGCGA+TGG - chr1_3:65486944-65486963 Msa0134040:five_prime_UTR 60.0%
!! AAAGGTGGTGCTGGCGATGG+TGG - chr1_3:65486947-65486966 Msa0134040:five_prime_UTR 60.0%
GGAACTCGTGGCGTTGCTGA+TGG - chr1_3:65487272-65487291 Msa0134040:five_prime_UTR 60.0%
GCGCTAAGCACGATACCGGG+AGG + chr1_3:65486318-65486337 None:intergenic 65.0%
GATGACCCTGGCGAGCCTCC+CGG - chr1_3:65486300-65486319 Msa0134040:CDS 70.0%
CGATACCGGGAGGCTCGCCA+GGG + chr1_3:65486308-65486327 None:intergenic 70.0%
ACGATACCGGGAGGCTCGCC+AGG + chr1_3:65486309-65486328 None:intergenic 70.0%
!! GGTGGTGCTGGCGATGGTGG+TGG - chr1_3:65486950-65486969 Msa0134040:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 65482364 65487491 65482364 ID=Msa0134040;Name=Msa0134040
chr1_3 mRNA 65482364 65487491 65482364 ID=Msa0134040-mRNA-1;Parent=Msa0134040;Name=Msa0134040-mRNA-1;_AED=0.08;_eAED=0.08;_QI=570|1|1|1|0.87|0.77|9|380|792
chr1_3 exon 65482364 65483127 65482364 ID=Msa0134040-mRNA-1:exon:22211;Parent=Msa0134040-mRNA-1
chr1_3 exon 65483346 65483713 65483346 ID=Msa0134040-mRNA-1:exon:22210;Parent=Msa0134040-mRNA-1
chr1_3 exon 65483812 65483986 65483812 ID=Msa0134040-mRNA-1:exon:22209;Parent=Msa0134040-mRNA-1
chr1_3 exon 65484749 65484961 65484749 ID=Msa0134040-mRNA-1:exon:22208;Parent=Msa0134040-mRNA-1
chr1_3 exon 65485044 65485145 65485044 ID=Msa0134040-mRNA-1:exon:22207;Parent=Msa0134040-mRNA-1
chr1_3 exon 65485321 65486004 65485321 ID=Msa0134040-mRNA-1:exon:22206;Parent=Msa0134040-mRNA-1
chr1_3 exon 65486245 65486362 65486245 ID=Msa0134040-mRNA-1:exon:22205;Parent=Msa0134040-mRNA-1
chr1_3 exon 65486457 65486683 65486457 ID=Msa0134040-mRNA-1:exon:22204;Parent=Msa0134040-mRNA-1
chr1_3 exon 65486814 65487491 65486814 ID=Msa0134040-mRNA-1:exon:22203;Parent=Msa0134040-mRNA-1
chr1_3 five_prime_UTR 65486922 65487491 65486922 ID=Msa0134040-mRNA-1:five_prime_utr;Parent=Msa0134040-mRNA-1
chr1_3 CDS 65486814 65486921 65486814 ID=Msa0134040-mRNA-1:cds;Parent=Msa0134040-mRNA-1
chr1_3 CDS 65486457 65486683 65486457 ID=Msa0134040-mRNA-1:cds;Parent=Msa0134040-mRNA-1
chr1_3 CDS 65486245 65486362 65486245 ID=Msa0134040-mRNA-1:cds;Parent=Msa0134040-mRNA-1
chr1_3 CDS 65485321 65486004 65485321 ID=Msa0134040-mRNA-1:cds;Parent=Msa0134040-mRNA-1
chr1_3 CDS 65485044 65485145 65485044 ID=Msa0134040-mRNA-1:cds;Parent=Msa0134040-mRNA-1
chr1_3 CDS 65484749 65484961 65484749 ID=Msa0134040-mRNA-1:cds;Parent=Msa0134040-mRNA-1
chr1_3 CDS 65483812 65483986 65483812 ID=Msa0134040-mRNA-1:cds;Parent=Msa0134040-mRNA-1
chr1_3 CDS 65483346 65483713 65483346 ID=Msa0134040-mRNA-1:cds;Parent=Msa0134040-mRNA-1
chr1_3 CDS 65482744 65483127 65482744 ID=Msa0134040-mRNA-1:cds;Parent=Msa0134040-mRNA-1
chr1_3 three_prime_UTR 65482364 65482743 65482364 ID=Msa0134040-mRNA-1:three_prime_utr;Parent=Msa0134040-mRNA-1
Gene Sequence

>Msa0134040

ATGGGGTTTGAGAGTGTGAACAGTTCCTGTAAGGTTGCAAGACTTGTCACTGATATTTCTATACCCTTTTCTAGTTCAATGCAAAATCCATCTTCTTTCTTATCAACTCAAAGAAAAATGGAGGGGCAGAGTGAGATTGGTCTCACTGGTGATAGCTTAGATACTGGTCTGCTTGGGAGAATGAGAGAGGATGAGTATGAAAGCCGGTCCGGAAGCGATAACTTTGATCTTGAAGGAATATCTGGTGATGATCAGGATGGTGGTGATGATGGTCAGCGCAAGAGGAAGAAGAGATACCACAGACACACTCCTAATCAAATTCAAGAGCTTGAATCTTTCTTCAAGGAGTGTCCTCATCCTGATGAAAAACAAAGGTTGGATCTTAGCAAGAGACTTGGCTTGGAAAATAAACAAGTCAAATTCTGGTTTCAGAATCGTCGAACCCAAATGAAGACTCAACTGGAAAGGCATGAGAACATAATGCTTAGGCAGGAAAATGACAAGCTAAGAGGGGAGAATAGCATGATGAAAGAAGCAATGGTGAATCCAATATGCAACAACTGTGGTGGACCAGCAATTCCTGGCCAAATATTGTTCGAAGAGCACCAGATTAGAATTGAAAACGCTCGTCTAAAGGACGAATTGAACCGTATATGTGCCTTAACAAACAAGTTCCTTGGCAAACCAATATCATCATTGGCTAATCCCATGGCTCTACCATCCTCAAATTCTGGTCTGGAACTTGGTATCGGAAGGAACGGTTTTGGTGGTGGTTCAAGCTCCCTCGGCAATCCTTTGCCAATGGGACTTGATCTCGGAGATGGTCGCTCAATGCCTGGTATTAGTTCACCAATGGGATTGATGGGAAGTAGCAGTGATGTTCAGCTTGAGAGATCGGCTCTAATAGATCTTGCATTGGCTGCTATGGATGAATTATTAAAGATGGCTCAGACAGATAGTCCTGTTTGGATTAAGGGCTTGGATGGAGAGAGAGACATATTGAATCAAGAAGAGTATGCACGGTTGATTTCTTCTTGTATTGGTCCTAAACCCGCTGGTTTTGTCGCTGAAGCTACGAGAGAAACCGGGATAGTAATAATCAACAGTTTAGCACTTGTGGAAACTTTGATGGATGCGAATCGATACGCAGATATGTTTCAGTCTATGATTGCTAGATCTGCCAACCTTGATGTTTTATCTGGTGGAATCGGTGGAACAAGAAATGGTGCTATACATTTGATGCATACTGAGGTTCAATTGCTTTCACCACTAGTCCCTGTTCGTCAAGTGAGAATCCTTCGGTTCTGTAAGCAGCATGCAGAAGGTGTATGGGCCGTGGTTGATGTTTCTGTTGAGATTGGTCATGATCCTTCTAATGCACAACCATTCATAAGCTGTAGAAGACTTCCTTCTGGCTGTATTGTGCAGGATATGCCAAATGGTTACTCCAAGGTCACTTGGATTGAGCACTGGGAGTATGATGAGAGTGTTGTTCACCAACTCTATCGTCCGTTGCTTATTTCTGGTTTTGGATTTGGCGCTCATAGATGGATCGCCACCCTCCAAAGGCAGTGTGAAGGCTTGGCTATCCTCATGTCCTCTTCCATCTCAAACGATGATCACACCGCATTGAGCCAAGCTGGTAGAAGAAGCATGTTGAAGCTGGCACAACGTATGACCAACAACTTCTGTTCTGGGGTTTGTGCTTCATCTGCTAGAAAATGGGACAGCCTCCAAATGGGGACTCTGAGTGATGACATGAGAGTTATGACTAGGAAAAATGTTGATGACCCTGGCGAGCCTCCCGGTATCGTGCTTAGCGCTGCAACATCTGTTTGGATGCCAGTTTCACGACAAAGACTGTTTGATTTTCTGCGTGATGAAAGGCTTAGAAGCGAGTGGGACATTTTGTCTAATGGTGGACCCATGCAAGAGATGGTTCACATTGCCAAAGGTCAAGGGCAAGGAAACTGCGTTTCTCTCCTTCGTGCTAATGCTGTTAATGCGAATGATAGCAGCATGTTGATTCTGCAAGAAACTTGGATGGATACATCTTGCTCGGTGGTGGTGTATGCACCAGTTGACGGGCAATCATTGAATGTGGTGATGAGTGGTGGAGATTCTGCATATGTTGCACTCTTGCCTTCAGGCTTTGCGATTGTTCCTGATGGTAATGATCCCTCTGGCTACGGCATGTCAAATGGTACTTTACAGAAAGGTGGTGCTGGCGATGGTGGTGGAAGTTTGCTCACAGTCGGATTCCAAATTCTGGTGAATAGTCTTCCAACTGCCAAGCTCACAATGGAGTCAGTTGATACTGTGAATAATCTCATCTCATGCACCATTCAGAAGATCAAAGCTGCACTTAGAGTTGCATAA
Protein sequence

>Msa0134040

MGFESVNSSCKVARLVTDISIPFSSSMQNPSSFLSTQRKMEGQSEIGLTGDSLDTGLLGRMREDEYESRSGSDNFDLEGISGDDQDGGDDGQRKRKKRYHRHTPNQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENDKLRGENSMMKEAMVNPICNNCGGPAIPGQILFEEHQIRIENARLKDELNRICALTNKFLGKPISSLANPMALPSSNSGLELGIGRNGFGGGSSSLGNPLPMGLDLGDGRSMPGISSPMGLMGSSSDVQLERSALIDLALAAMDELLKMAQTDSPVWIKGLDGERDILNQEEYARLISSCIGPKPAGFVAEATRETGIVIINSLALVETLMDANRYADMFQSMIARSANLDVLSGGIGGTRNGAIHLMHTEVQLLSPLVPVRQVRILRFCKQHAEGVWAVVDVSVEIGHDPSNAQPFISCRRLPSGCIVQDMPNGYSKVTWIEHWEYDESVVHQLYRPLLISGFGFGAHRWIATLQRQCEGLAILMSSSISNDDHTALSQAGRRSMLKLAQRMTNNFCSGVCASSARKWDSLQMGTLSDDMRVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRLFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGQGNCVSLLRANAVNANDSSMLILQETWMDTSCSVVVYAPVDGQSLNVVMSGGDSAYVALLPSGFAIVPDGNDPSGYGMSNGTLQKGGAGDGGGSLLTVGFQILVNSLPTAKLTMESVDTVNNLISCTIQKIKAALRVA*