AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0334980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334980 MtrunA17_Chr2g0319281 99.130 230 2 0 1 230 1 230 1.55e-171 471
Msa0334980 MtrunA17_Chr5g0417771 29.358 109 77 0 104 212 141 249 1.09e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334980 AT3G01440.1 55.357 224 94 3 1 223 1 219 2.60e-83 248
Msa0334980 AT4G21280.1 26.106 226 160 4 1 223 1 222 2.60e-18 80.9
Msa0334980 AT4G21280.2 25.991 227 160 5 1 223 1 223 1.40e-17 79.0
Msa0334980 AT4G05180.2 28.249 177 123 2 50 223 54 229 4.03e-15 72.4
Msa0334980 AT4G05180.1 28.249 177 123 2 50 223 54 229 4.03e-15 72.4
Msa0334980 AT1G14150.1 28.346 127 91 0 95 221 61 187 4.32e-13 65.9
Msa0334980 AT1G14150.2 31.250 96 66 0 98 193 64 159 3.05e-11 60.5

Find 48 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCACTTGTCCTGTCTTAA+AGG 0.149402 2_4:-54082085 None:intergenic
TAGCTAAGGATAATGGATTT+TGG 0.177277 2_4:+54082235 Msa0334980:CDS
CTTGTTTCTCTAGTTCTTAC+AGG 0.240422 2_4:+54082189 Msa0334980:CDS
TTAAAGGTTCTTTGTGCATT+TGG 0.275452 2_4:-54082069 None:intergenic
GAGTAGCTTCTTCACCATTA+TGG 0.285901 2_4:+54081987 Msa0334980:exon
TTTGGAACAAGGCATGTAAT+TGG 0.297323 2_4:-54082051 None:intergenic
CAAGTGGTAGTTGGATTTCT+TGG 0.303211 2_4:+54082099 Msa0334980:CDS
CTATTAGTGACAGTTGGTTC+TGG 0.310416 2_4:-54082273 None:intergenic
AAACTCTACATGGCAAATAT+TGG 0.316818 2_4:+54083040 Msa0334980:CDS
GTGACAGTTGGTTCTGGAAT+AGG 0.317646 2_4:-54082267 None:intergenic
ATTTCACTAGCTAAGGATAA+TGG 0.333626 2_4:+54082228 Msa0334980:CDS
TGAAAGTAGACTTGAGTCTT+AGG 0.346421 2_4:-54083162 None:intergenic
TGTAATTGGAGTTAAAGTTT+TGG 0.348907 2_4:-54082037 None:intergenic
GATCCTTAAAACACTTCCTT+TGG 0.359342 2_4:-54083065 None:intergenic
GATATTGCAAATGAGAAAAC+GGG 0.400999 2_4:+54082995 Msa0334980:intron
TGAAACACAAGCATGCTATA+AGG 0.409707 2_4:+54083614 Msa0334980:CDS
AATTGCTGCTTATCTTCAGC+TGG 0.415937 2_4:-54083220 None:intergenic
ACTCCATGCAAATTTGTTAG+AGG 0.418986 2_4:-54082012 None:intergenic
GACAGCTTGAAGAAGCTTCA+AGG 0.421927 2_4:+54083577 Msa0334980:intron
AAGACACACTCAACTATGTT+AGG 0.422431 2_4:+54083134 Msa0334980:CDS
GATTGTGTTGATTCAAGATA+AGG 0.436387 2_4:+54083753 Msa0334980:three_prime_UTR
AGATATTGCAAATGAGAAAA+CGG 0.438542 2_4:+54082994 Msa0334980:intron
ATTTGTTAGAGGAGCCATAA+TGG 0.451258 2_4:-54082001 None:intergenic
AAGACAGGACAAGTGGTAGT+TGG 0.487730 2_4:+54082090 Msa0334980:CDS
ATCTTACTATTAGTGACAGT+TGG 0.488173 2_4:-54082279 None:intergenic
TTCTTTGTGCATTTGGAACA+AGG 0.495526 2_4:-54082062 None:intergenic
TAGCACTAGCACTTCCCAAA+TGG 0.498901 2_4:+54081891 Msa0334980:five_prime_UTR
TGCATTTGATCTTCTTGCAA+TGG 0.504301 2_4:+54083096 Msa0334980:CDS
TCCACTGAGTGGCACTAGAA+AGG 0.513605 2_4:-54081863 None:intergenic
TGAGAAGATTTCACTAGCTA+AGG 0.517657 2_4:+54082221 Msa0334980:CDS
TGCTTAAAGATGTCATGGAC+AGG 0.522204 2_4:+54083649 Msa0334980:CDS
ATTTGATCTTCTTGCAATGG+CGG 0.551344 2_4:+54083099 Msa0334980:CDS
ATTGCTGCTTATCTTCAGCT+GGG 0.551798 2_4:-54083219 None:intergenic
TTTGGGAAGTGCTAGTGCTA+TGG 0.552026 2_4:-54081888 None:intergenic
ATGGCAAATATTGGAGCCAA+AGG 0.555680 2_4:+54083049 Msa0334980:CDS
GCACAAAGAACCTTTAAGAC+AGG 0.560597 2_4:+54082075 Msa0334980:CDS
TAAGCAGCAATTAACTGATG+TGG 0.578245 2_4:+54083231 Msa0334980:CDS
AGTTATGCTTAAAGATGTCA+TGG 0.580022 2_4:+54083644 Msa0334980:CDS
AACCTTTAAGACAGGACAAG+TGG 0.586352 2_4:+54082083 Msa0334980:CDS
GCTCCTCTAACAAATTTGCA+TGG 0.591211 2_4:+54082009 Msa0334980:CDS
TATCAAGAAGAAACTCTACA+TGG 0.592066 2_4:+54083030 Msa0334980:CDS
ATGTATAAAACAATTTGACA+TGG 0.593271 2_4:+54083681 Msa0334980:exon
ACACACTCAACTATGTTAGG+AGG 0.598523 2_4:+54083137 Msa0334980:CDS
CTGTAAGAACTAGAGAAACA+AGG 0.599334 2_4:-54082188 None:intergenic
ATAGCATTTATCTATCTACA+AGG 0.601141 2_4:-54083785 None:intergenic
TCCTTTCTAGTGCCACTCAG+TGG 0.641696 2_4:+54081862 None:intergenic
GTGCTATGGTGTCCACTGAG+TGG 0.645765 2_4:-54081874 None:intergenic
ATATTGCAAATGAGAAAACG+GGG 0.743479 2_4:+54082996 Msa0334980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGATAATTCATTAAATTTT+TGG - chr2_4:54081939-54081958 None:intergenic 10.0%
!! TTAATAATAAACAAATGTAA+TGG - chr2_4:54082644-54082663 None:intergenic 10.0%
!!! TAGATAATTCATTAAATTTT+TGG - chr2_4:54081939-54081958 None:intergenic 10.0%
!! TTAATAATAAACAAATGTAA+TGG - chr2_4:54082644-54082663 None:intergenic 10.0%
!! TATAGCTAATTAATTTACAT+AGG + chr2_4:54082312-54082331 Msa0334980:intron 15.0%
!! AAATATTAATTGTACTATCA+TGG + chr2_4:54082508-54082527 Msa0334980:intron 15.0%
!! TTATTAATAAACAAATGCAA+TGG + chr2_4:54082555-54082574 Msa0334980:intron 15.0%
!! TTTGTTTATTATTAAATCGA+TGG + chr2_4:54082649-54082668 Msa0334980:intron 15.0%
!! ATATTCTATTATTCAAACTT+AGG - chr2_4:54082842-54082861 None:intergenic 15.0%
!!! ATTGTTTGATAATTTTGAAA+AGG + chr2_4:54083261-54083280 Msa0334980:CDS 15.0%
!! ATTCACATAATATTAAATTG+CGG - chr2_4:54083520-54083539 None:intergenic 15.0%
!! TATAGCTAATTAATTTACAT+AGG + chr2_4:54082312-54082331 Msa0334980:intron 15.0%
!! AAATATTAATTGTACTATCA+TGG + chr2_4:54082508-54082527 Msa0334980:intron 15.0%
!! TTATTAATAAACAAATGCAA+TGG + chr2_4:54082555-54082574 Msa0334980:intron 15.0%
!! TTTGTTTATTATTAAATCGA+TGG + chr2_4:54082649-54082668 Msa0334980:intron 15.0%
!! ATATTCTATTATTCAAACTT+AGG - chr2_4:54082842-54082861 None:intergenic 15.0%
!!! ATTGTTTGATAATTTTGAAA+AGG + chr2_4:54083261-54083280 Msa0334980:CDS 15.0%
!! ATTCACATAATATTAAATTG+CGG - chr2_4:54083520-54083539 None:intergenic 15.0%
!! TTTATGTTTCAATTGACATT+TGG + chr2_4:54082403-54082422 Msa0334980:intron 20.0%
!! TATAATTAACTTCATCATGA+TGG + chr2_4:54082673-54082692 Msa0334980:intron 20.0%
!! CAATGTAAATGATGATTATA+TGG + chr2_4:54082969-54082988 Msa0334980:intron 20.0%
!! AATATTATGTGAATAGATGT+TGG + chr2_4:54083526-54083545 Msa0334980:intron 20.0%
!! ATGTATAAAACAATTTGACA+TGG + chr2_4:54083681-54083700 Msa0334980:exon 20.0%
!! TTTATGTTTCAATTGACATT+TGG + chr2_4:54082403-54082422 Msa0334980:intron 20.0%
!! TATAATTAACTTCATCATGA+TGG + chr2_4:54082673-54082692 Msa0334980:intron 20.0%
!! CAATGTAAATGATGATTATA+TGG + chr2_4:54082969-54082988 Msa0334980:intron 20.0%
!! AATATTATGTGAATAGATGT+TGG + chr2_4:54083526-54083545 Msa0334980:intron 20.0%
!! ATGTATAAAACAATTTGACA+TGG + chr2_4:54083681-54083700 Msa0334980:exon 20.0%
!! TTTTTGTGACATATCCATTT+GGG - chr2_4:54081908-54081927 None:intergenic 25.0%
!!! TTTTTTGTGACATATCCATT+TGG - chr2_4:54081909-54081928 None:intergenic 25.0%
!! TGTAATTGGAGTTAAAGTTT+TGG - chr2_4:54082040-54082059 None:intergenic 25.0%
!! ACATTTGGAACAATTATGAT+TGG + chr2_4:54082418-54082437 Msa0334980:intron 25.0%
! GTTATGATTGAAATTTAGCA+TGG + chr2_4:54082476-54082495 Msa0334980:intron 25.0%
! TATGTTATAGTCCAATTTAC+AGG - chr2_4:54082796-54082815 None:intergenic 25.0%
!! CAATATTTTATCACAGAGTT+CGG - chr2_4:54082895-54082914 None:intergenic 25.0%
! AGATATTGCAAATGAGAAAA+CGG + chr2_4:54082994-54083013 Msa0334980:intron 25.0%
!!! GTATGCTCTTTTTTAAATTG+CGG + chr2_4:54083283-54083302 Msa0334980:intron 25.0%
! ATAGCATTTATCTATCTACA+AGG - chr2_4:54083788-54083807 None:intergenic 25.0%
!! TTTTTGTGACATATCCATTT+GGG - chr2_4:54081908-54081927 None:intergenic 25.0%
!!! TTTTTTGTGACATATCCATT+TGG - chr2_4:54081909-54081928 None:intergenic 25.0%
!! TGTAATTGGAGTTAAAGTTT+TGG - chr2_4:54082040-54082059 None:intergenic 25.0%
!! ACATTTGGAACAATTATGAT+TGG + chr2_4:54082418-54082437 Msa0334980:intron 25.0%
! GTTATGATTGAAATTTAGCA+TGG + chr2_4:54082476-54082495 Msa0334980:intron 25.0%
! TATGTTATAGTCCAATTTAC+AGG - chr2_4:54082796-54082815 None:intergenic 25.0%
!! CAATATTTTATCACAGAGTT+CGG - chr2_4:54082895-54082914 None:intergenic 25.0%
! AGATATTGCAAATGAGAAAA+CGG + chr2_4:54082994-54083013 Msa0334980:intron 25.0%
!!! GTATGCTCTTTTTTAAATTG+CGG + chr2_4:54083283-54083302 Msa0334980:intron 25.0%
! ATAGCATTTATCTATCTACA+AGG - chr2_4:54083788-54083807 None:intergenic 25.0%
TTAAAGGTTCTTTGTGCATT+TGG - chr2_4:54082072-54082091 None:intergenic 30.0%
ATTTCACTAGCTAAGGATAA+TGG + chr2_4:54082228-54082247 Msa0334980:CDS 30.0%
!!! TAGCTAAGGATAATGGATTT+TGG + chr2_4:54082235-54082254 Msa0334980:CDS 30.0%
!!! GATAATGGATTTTGGATTGA+TGG + chr2_4:54082243-54082262 Msa0334980:CDS 30.0%
ATCTTACTATTAGTGACAGT+TGG - chr2_4:54082282-54082301 None:intergenic 30.0%
TACCTATTAGTGAAGTACAA+TGG + chr2_4:54082596-54082615 Msa0334980:intron 30.0%
! TTTTCGTATCTGTTTGAACT+AGG + chr2_4:54082933-54082952 Msa0334980:intron 30.0%
TTTCGTATCTGTTTGAACTA+GGG + chr2_4:54082934-54082953 Msa0334980:intron 30.0%
GATATTGCAAATGAGAAAAC+GGG + chr2_4:54082995-54083014 Msa0334980:intron 30.0%
ATATTGCAAATGAGAAAACG+GGG + chr2_4:54082996-54083015 Msa0334980:CDS 30.0%
TATCAAGAAGAAACTCTACA+TGG + chr2_4:54083030-54083049 Msa0334980:CDS 30.0%
AAACTCTACATGGCAAATAT+TGG + chr2_4:54083040-54083059 Msa0334980:CDS 30.0%
!! CATGTACTTTGATTTTGACA+AGG + chr2_4:54083183-54083202 Msa0334980:CDS 30.0%
!! ATTTTAGTCCTTGATATTGC+AGG + chr2_4:54083320-54083339 Msa0334980:intron 30.0%
! CACATTTGTCTGCAATATTT+TGG - chr2_4:54083371-54083390 None:intergenic 30.0%
CAAAATATTGCAGACAAATG+TGG + chr2_4:54083369-54083388 Msa0334980:intron 30.0%
CATAAAGTTGCAAACAAATG+TGG + chr2_4:54083442-54083461 Msa0334980:intron 30.0%
AGTTATGCTTAAAGATGTCA+TGG + chr2_4:54083644-54083663 Msa0334980:CDS 30.0%
!! GATTGTGTTGATTCAAGATA+AGG + chr2_4:54083753-54083772 Msa0334980:three_prime_UTR 30.0%
TTAAAGGTTCTTTGTGCATT+TGG - chr2_4:54082072-54082091 None:intergenic 30.0%
ATTTCACTAGCTAAGGATAA+TGG + chr2_4:54082228-54082247 Msa0334980:CDS 30.0%
!!! TAGCTAAGGATAATGGATTT+TGG + chr2_4:54082235-54082254 Msa0334980:CDS 30.0%
!!! GATAATGGATTTTGGATTGA+TGG + chr2_4:54082243-54082262 Msa0334980:CDS 30.0%
ATCTTACTATTAGTGACAGT+TGG - chr2_4:54082282-54082301 None:intergenic 30.0%
TACCTATTAGTGAAGTACAA+TGG + chr2_4:54082596-54082615 Msa0334980:intron 30.0%
! TTTTCGTATCTGTTTGAACT+AGG + chr2_4:54082933-54082952 Msa0334980:intron 30.0%
TTTCGTATCTGTTTGAACTA+GGG + chr2_4:54082934-54082953 Msa0334980:intron 30.0%
GATATTGCAAATGAGAAAAC+GGG + chr2_4:54082995-54083014 Msa0334980:intron 30.0%
ATATTGCAAATGAGAAAACG+GGG + chr2_4:54082996-54083015 Msa0334980:CDS 30.0%
TATCAAGAAGAAACTCTACA+TGG + chr2_4:54083030-54083049 Msa0334980:CDS 30.0%
AAACTCTACATGGCAAATAT+TGG + chr2_4:54083040-54083059 Msa0334980:CDS 30.0%
!! CATGTACTTTGATTTTGACA+AGG + chr2_4:54083183-54083202 Msa0334980:CDS 30.0%
!! ATTTTAGTCCTTGATATTGC+AGG + chr2_4:54083320-54083339 Msa0334980:intron 30.0%
! CACATTTGTCTGCAATATTT+TGG - chr2_4:54083371-54083390 None:intergenic 30.0%
CAAAATATTGCAGACAAATG+TGG + chr2_4:54083369-54083388 Msa0334980:intron 30.0%
CATAAAGTTGCAAACAAATG+TGG + chr2_4:54083442-54083461 Msa0334980:intron 30.0%
AGTTATGCTTAAAGATGTCA+TGG + chr2_4:54083644-54083663 Msa0334980:CDS 30.0%
!! GATTGTGTTGATTCAAGATA+AGG + chr2_4:54083753-54083772 Msa0334980:three_prime_UTR 30.0%
! ATTTGTTAGAGGAGCCATAA+TGG - chr2_4:54082004-54082023 None:intergenic 35.0%
!! ACTCCATGCAAATTTGTTAG+AGG - chr2_4:54082015-54082034 None:intergenic 35.0%
! TTTGGAACAAGGCATGTAAT+TGG - chr2_4:54082054-54082073 None:intergenic 35.0%
! TTCTTTGTGCATTTGGAACA+AGG - chr2_4:54082065-54082084 None:intergenic 35.0%
CTGTAAGAACTAGAGAAACA+AGG - chr2_4:54082191-54082210 None:intergenic 35.0%
!! CTTGTTTCTCTAGTTCTTAC+AGG + chr2_4:54082189-54082208 Msa0334980:CDS 35.0%
TGAGAAGATTTCACTAGCTA+AGG + chr2_4:54082221-54082240 Msa0334980:CDS 35.0%
TGCCATTGTACTTCACTAAT+AGG - chr2_4:54082601-54082620 None:intergenic 35.0%
TTAGGGGTAATCCTGTAAAT+TGG + chr2_4:54082782-54082801 Msa0334980:intron 35.0%
GATCCTTAAAACACTTCCTT+TGG - chr2_4:54083068-54083087 None:intergenic 35.0%
TGCATTTGATCTTCTTGCAA+TGG + chr2_4:54083096-54083115 Msa0334980:CDS 35.0%
ATTTGATCTTCTTGCAATGG+CGG + chr2_4:54083099-54083118 Msa0334980:CDS 35.0%
AAGACACACTCAACTATGTT+AGG + chr2_4:54083134-54083153 Msa0334980:CDS 35.0%
TGAAAGTAGACTTGAGTCTT+AGG - chr2_4:54083165-54083184 None:intergenic 35.0%
TAAGCAGCAATTAACTGATG+TGG + chr2_4:54083231-54083250 Msa0334980:CDS 35.0%
!!! CACTTTTTCCTGCAATATCA+AGG - chr2_4:54083331-54083350 None:intergenic 35.0%
CTTGATATTGCAGGAAAAAG+TGG + chr2_4:54083329-54083348 Msa0334980:intron 35.0%
TGAAACACAAGCATGCTATA+AGG + chr2_4:54083614-54083633 Msa0334980:CDS 35.0%
! ATTTGTTAGAGGAGCCATAA+TGG - chr2_4:54082004-54082023 None:intergenic 35.0%
!! ACTCCATGCAAATTTGTTAG+AGG - chr2_4:54082015-54082034 None:intergenic 35.0%
! TTTGGAACAAGGCATGTAAT+TGG - chr2_4:54082054-54082073 None:intergenic 35.0%
! TTCTTTGTGCATTTGGAACA+AGG - chr2_4:54082065-54082084 None:intergenic 35.0%
CTGTAAGAACTAGAGAAACA+AGG - chr2_4:54082191-54082210 None:intergenic 35.0%
!! CTTGTTTCTCTAGTTCTTAC+AGG + chr2_4:54082189-54082208 Msa0334980:CDS 35.0%
TGAGAAGATTTCACTAGCTA+AGG + chr2_4:54082221-54082240 Msa0334980:CDS 35.0%
TGCCATTGTACTTCACTAAT+AGG - chr2_4:54082601-54082620 None:intergenic 35.0%
TTAGGGGTAATCCTGTAAAT+TGG + chr2_4:54082782-54082801 Msa0334980:intron 35.0%
GATCCTTAAAACACTTCCTT+TGG - chr2_4:54083068-54083087 None:intergenic 35.0%
TGCATTTGATCTTCTTGCAA+TGG + chr2_4:54083096-54083115 Msa0334980:CDS 35.0%
ATTTGATCTTCTTGCAATGG+CGG + chr2_4:54083099-54083118 Msa0334980:CDS 35.0%
AAGACACACTCAACTATGTT+AGG + chr2_4:54083134-54083153 Msa0334980:CDS 35.0%
TGAAAGTAGACTTGAGTCTT+AGG - chr2_4:54083165-54083184 None:intergenic 35.0%
TAAGCAGCAATTAACTGATG+TGG + chr2_4:54083231-54083250 Msa0334980:CDS 35.0%
!!! CACTTTTTCCTGCAATATCA+AGG - chr2_4:54083331-54083350 None:intergenic 35.0%
CTTGATATTGCAGGAAAAAG+TGG + chr2_4:54083329-54083348 Msa0334980:intron 35.0%
TGAAACACAAGCATGCTATA+AGG + chr2_4:54083614-54083633 Msa0334980:CDS 35.0%
GAGTAGCTTCTTCACCATTA+TGG + chr2_4:54081987-54082006 Msa0334980:exon 40.0%
GCTCCTCTAACAAATTTGCA+TGG + chr2_4:54082009-54082028 Msa0334980:CDS 40.0%
!! GCACAAAGAACCTTTAAGAC+AGG + chr2_4:54082075-54082094 Msa0334980:CDS 40.0%
!! AACCTTTAAGACAGGACAAG+TGG + chr2_4:54082083-54082102 Msa0334980:CDS 40.0%
TACCACTTGTCCTGTCTTAA+AGG - chr2_4:54082088-54082107 None:intergenic 40.0%
CAAGTGGTAGTTGGATTTCT+TGG + chr2_4:54082099-54082118 Msa0334980:CDS 40.0%
! CTATTAGTGACAGTTGGTTC+TGG - chr2_4:54082276-54082295 None:intergenic 40.0%
GACTTGTGCACTTATCAGTA+AGG - chr2_4:54082732-54082751 None:intergenic 40.0%
TAGACCATACTAAGTGGCTT+AGG + chr2_4:54082764-54082783 Msa0334980:intron 40.0%
AGACCATACTAAGTGGCTTA+GGG + chr2_4:54082765-54082784 Msa0334980:intron 40.0%
ATGGCAAATATTGGAGCCAA+AGG + chr2_4:54083049-54083068 Msa0334980:CDS 40.0%
!!! GAGCCAAAGGAAGTGTTTTA+AGG + chr2_4:54083062-54083081 Msa0334980:CDS 40.0%
ACACACTCAACTATGTTAGG+AGG + chr2_4:54083137-54083156 Msa0334980:CDS 40.0%
! ATTGCTGCTTATCTTCAGCT+GGG - chr2_4:54083222-54083241 None:intergenic 40.0%
! AATTGCTGCTTATCTTCAGC+TGG - chr2_4:54083223-54083242 None:intergenic 40.0%
CATAATCATGACCGCAATTG+TGG - chr2_4:54083404-54083423 None:intergenic 40.0%
GCAAACAAATGTGGCTAATG+CGG + chr2_4:54083451-54083470 Msa0334980:intron 40.0%
AATTGTGGCACAAATGTCGT+TGG - chr2_4:54083486-54083505 None:intergenic 40.0%
TGCTTAAAGATGTCATGGAC+AGG + chr2_4:54083649-54083668 Msa0334980:CDS 40.0%
GAGTAGCTTCTTCACCATTA+TGG + chr2_4:54081987-54082006 Msa0334980:exon 40.0%
GCTCCTCTAACAAATTTGCA+TGG + chr2_4:54082009-54082028 Msa0334980:CDS 40.0%
!! GCACAAAGAACCTTTAAGAC+AGG + chr2_4:54082075-54082094 Msa0334980:CDS 40.0%
!! AACCTTTAAGACAGGACAAG+TGG + chr2_4:54082083-54082102 Msa0334980:CDS 40.0%
TACCACTTGTCCTGTCTTAA+AGG - chr2_4:54082088-54082107 None:intergenic 40.0%
CAAGTGGTAGTTGGATTTCT+TGG + chr2_4:54082099-54082118 Msa0334980:CDS 40.0%
! CTATTAGTGACAGTTGGTTC+TGG - chr2_4:54082276-54082295 None:intergenic 40.0%
GACTTGTGCACTTATCAGTA+AGG - chr2_4:54082732-54082751 None:intergenic 40.0%
TAGACCATACTAAGTGGCTT+AGG + chr2_4:54082764-54082783 Msa0334980:intron 40.0%
AGACCATACTAAGTGGCTTA+GGG + chr2_4:54082765-54082784 Msa0334980:intron 40.0%
ATGGCAAATATTGGAGCCAA+AGG + chr2_4:54083049-54083068 Msa0334980:CDS 40.0%
!!! GAGCCAAAGGAAGTGTTTTA+AGG + chr2_4:54083062-54083081 Msa0334980:CDS 40.0%
ACACACTCAACTATGTTAGG+AGG + chr2_4:54083137-54083156 Msa0334980:CDS 40.0%
! ATTGCTGCTTATCTTCAGCT+GGG - chr2_4:54083222-54083241 None:intergenic 40.0%
! AATTGCTGCTTATCTTCAGC+TGG - chr2_4:54083223-54083242 None:intergenic 40.0%
CATAATCATGACCGCAATTG+TGG - chr2_4:54083404-54083423 None:intergenic 40.0%
GCAAACAAATGTGGCTAATG+CGG + chr2_4:54083451-54083470 Msa0334980:intron 40.0%
AATTGTGGCACAAATGTCGT+TGG - chr2_4:54083486-54083505 None:intergenic 40.0%
TGCTTAAAGATGTCATGGAC+AGG + chr2_4:54083649-54083668 Msa0334980:CDS 40.0%
!! TTTGGGAAGTGCTAGTGCTA+TGG - chr2_4:54081891-54081910 None:intergenic 45.0%
TAGCACTAGCACTTCCCAAA+TGG + chr2_4:54081891-54081910 Msa0334980:five_prime_UTR 45.0%
AAGACAGGACAAGTGGTAGT+TGG + chr2_4:54082090-54082109 Msa0334980:CDS 45.0%
!! GTGACAGTTGGTTCTGGAAT+AGG - chr2_4:54082270-54082289 None:intergenic 45.0%
TAGTATGGTCTAGTCAGCTC+AGG - chr2_4:54082756-54082775 None:intergenic 45.0%
GCTGACTAGACCATACTAAG+TGG + chr2_4:54082758-54082777 Msa0334980:intron 45.0%
GACCATACTAAGTGGCTTAG+GGG + chr2_4:54082766-54082785 Msa0334980:intron 45.0%
TACCCCTAAGCCACTTAGTA+TGG - chr2_4:54082771-54082790 None:intergenic 45.0%
GTCAGAGACGTAGACACAAT+TGG + chr2_4:54082869-54082888 Msa0334980:intron 45.0%
GACAGCTTGAAGAAGCTTCA+AGG + chr2_4:54083577-54083596 Msa0334980:intron 45.0%
!! TTTGGGAAGTGCTAGTGCTA+TGG - chr2_4:54081891-54081910 None:intergenic 45.0%
TAGCACTAGCACTTCCCAAA+TGG + chr2_4:54081891-54081910 Msa0334980:five_prime_UTR 45.0%
AAGACAGGACAAGTGGTAGT+TGG + chr2_4:54082090-54082109 Msa0334980:CDS 45.0%
!! GTGACAGTTGGTTCTGGAAT+AGG - chr2_4:54082270-54082289 None:intergenic 45.0%
TAGTATGGTCTAGTCAGCTC+AGG - chr2_4:54082756-54082775 None:intergenic 45.0%
GCTGACTAGACCATACTAAG+TGG + chr2_4:54082758-54082777 Msa0334980:intron 45.0%
GACCATACTAAGTGGCTTAG+GGG + chr2_4:54082766-54082785 Msa0334980:intron 45.0%
TACCCCTAAGCCACTTAGTA+TGG - chr2_4:54082771-54082790 None:intergenic 45.0%
GTCAGAGACGTAGACACAAT+TGG + chr2_4:54082869-54082888 Msa0334980:intron 45.0%
GACAGCTTGAAGAAGCTTCA+AGG + chr2_4:54083577-54083596 Msa0334980:intron 45.0%
ACAAATGTCGTTGGACCACG+CGG - chr2_4:54083477-54083496 None:intergenic 50.0%
GCGGTCAACAACTGCAATTG+TGG - chr2_4:54083501-54083520 None:intergenic 50.0%
ACAAATGTCGTTGGACCACG+CGG - chr2_4:54083477-54083496 None:intergenic 50.0%
GCGGTCAACAACTGCAATTG+TGG - chr2_4:54083501-54083520 None:intergenic 50.0%
GTGCTATGGTGTCCACTGAG+TGG - chr2_4:54081877-54081896 None:intergenic 55.0%
GGCTGATGCGACCACAATTG+CGG + chr2_4:54083390-54083409 Msa0334980:intron 55.0%
GTGCTATGGTGTCCACTGAG+TGG - chr2_4:54081877-54081896 None:intergenic 55.0%
GGCTGATGCGACCACAATTG+CGG + chr2_4:54083390-54083409 Msa0334980:intron 55.0%
ATGTGGCTAATGCGGCCGCG+TGG + chr2_4:54083459-54083478 Msa0334980:intron 65.0%
ATGTGGCTAATGCGGCCGCG+TGG + chr2_4:54083459-54083478 Msa0334980:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 54081864 54083865 54081864 ID=Msa0334980;Name=Msa0334980
chr2_4 mRNA 54081864 54083865 54081864 ID=Msa0334980-mRNA-1;Parent=Msa0334980;Name=Msa0334980-mRNA-1;_AED=0.01;_eAED=0.01;_QI=142|1|1|1|1|1|3|167|230
chr2_4 exon 54081864 54082294 54081864 ID=Msa0334980-mRNA-1:exon:16265;Parent=Msa0334980-mRNA-1
chr2_4 exon 54082996 54083282 54082996 ID=Msa0334980-mRNA-1:exon:16266;Parent=Msa0334980-mRNA-1
chr2_4 exon 54083582 54083865 54083582 ID=Msa0334980-mRNA-1:exon:16267;Parent=Msa0334980-mRNA-1
chr2_4 five_prime_UTR 54081864 54082005 54081864 ID=Msa0334980-mRNA-1:five_prime_utr;Parent=Msa0334980-mRNA-1
chr2_4 CDS 54082006 54082294 54082006 ID=Msa0334980-mRNA-1:cds;Parent=Msa0334980-mRNA-1
chr2_4 CDS 54082996 54083282 54082996 ID=Msa0334980-mRNA-1:cds;Parent=Msa0334980-mRNA-1
chr2_4 CDS 54083582 54083698 54083582 ID=Msa0334980-mRNA-1:cds;Parent=Msa0334980-mRNA-1
chr2_4 three_prime_UTR 54083699 54083865 54083699 ID=Msa0334980-mRNA-1:three_prime_utr;Parent=Msa0334980-mRNA-1
Gene Sequence

>Msa0334980

ATGGCTCCTCTAACAAATTTGCATGGAGTCTCCAAAACTTTAACTCCAATTACATGCCTTGTTCCAAATGCACAAAGAACCTTTAAGACAGGACAAGTGGTAGTTGGATTTCTTGGAAGCAAAACAAAGAAATCATCAGAATGTGAATCAGTTAACACTACAAGAAGAGCAGCTGCAATAAGCCTTGTTTCTCTAGTTCTTACAGGACAATTCAGTGAGAAGATTTCACTAGCTAAGGATAATGGATTTTGGATTGATGGACCTATTCCAGAACCAACTGTCACTAATAATATTGCAAATGAGAAAACGGGGACACGTTCTTTTATCAAGAAGAAACTCTACATGGCAAATATTGGAGCCAAAGGAAGTGTTTTAAGGATCAAGAAATATGCATTTGATCTTCTTGCAATGGCGGATTTGATTGCACAAGACACACTCAACTATGTTAGGAGGTACCTAAGACTCAAGTCTACTTTCATGTACTTTGATTTTGACAAGGTTATCTCTGCTGTCCCAGCTGAAGATAAGCAGCAATTAACTGATGTGGCAAACAAATTGTTTGATAATTTTGAAAAGCTTGAAGAAGCTTCAAGGAACAAAAATTTACTTGAAACACAAGCATGCTATAAGGAAACTGAAGTTATGCTTAAAGATGTCATGGACAGGATGACTATAATGTATAAAACAATTTGA

Protein sequence

>Msa0334980

MAPLTNLHGVSKTLTPITCLVPNAQRTFKTGQVVVGFLGSKTKKSSECESVNTTRRAAAISLVSLVLTGQFSEKISLAKDNGFWIDGPIPEPTVTNNIANEKTGTRSFIKKKLYMANIGAKGSVLRIKKYAFDLLAMADLIAQDTLNYVRRYLRLKSTFMYFDFDKVISAVPAEDKQQLTDVANKLFDNFEKLEEASRNKNLLETQACYKETEVMLKDVMDRMTIMYKTI*