AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1080690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080690 MtrunA17_Chr7g0267161 95.570 158 7 0 1 158 1 158 1.65e-110 310
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080690 AT2G33180.1 76.344 93 22 0 66 158 74 166 1.54e-48 154

Find 98 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGAACATTTAATAAATT+AGG 0.202937 7_2:+80260823 Msa1080690:three_prime_UTR
GGTGATTTGGGCAACGGTAT+AGG 0.256823 7_2:+80261111 Msa1080690:three_prime_UTR
GTGATTTGGGCAACGGTATA+GGG 0.304559 7_2:+80261112 Msa1080690:three_prime_UTR
AACTCTTGCTATAGAAATTC+AGG 0.324340 7_2:+80259111 Msa1080690:five_prime_UTR
ACCAACACTTGTATCAATTA+AGG 0.328965 7_2:-80261049 None:intergenic
AGGAAACAACAACTCTTAAA+AGG 0.348485 7_2:-80260444 None:intergenic
GATAGTCCTGAGAATTTCTA+AGG 0.364684 7_2:+80259729 Msa1080690:CDS
GATAAGGTGACTTGGTGATT+TGG 0.366081 7_2:+80261098 Msa1080690:three_prime_UTR
CCTTCTCAATTTGAGAAGCT+TGG 0.375168 7_2:+80260531 Msa1080690:three_prime_UTR
ACTGAAAGAGATGCTGATAA+AGG 0.378200 7_2:-80259329 None:intergenic
TTTGAGATAATTAGCAAGTC+TGG 0.379651 7_2:-80259540 None:intergenic
TTAGCTTGAAGGGTCGGTTT+TGG 0.381453 7_2:+80259495 Msa1080690:CDS
TCCCCTTCACACTGATTATG+AGG 0.382972 7_2:+80260972 Msa1080690:three_prime_UTR
TCCTATTCCCAACACTCCTT+TGG 0.383151 7_2:+80259068 Msa1080690:five_prime_UTR
AACACAGTGACAGTGCCTTC+TGG 0.384818 7_2:-80259172 None:intergenic
GGAGTGTTGGGAATAGGATA+TGG 0.395725 7_2:-80259063 None:intergenic
TGGTCACCAGTTTCATATCT+AGG 0.397018 7_2:-80260868 None:intergenic
ATAAGGTGACTTGGTGATTT+GGG 0.397109 7_2:+80261099 Msa1080690:three_prime_UTR
TTGTTTAGTTGAGTGCTTAC+GGG 0.399777 7_2:+80259023 Msa1080690:five_prime_UTR
CAATTTGAGAAGCTTGGATA+AGG 0.399848 7_2:+80260537 Msa1080690:three_prime_UTR
GTTGGTATCATTTGATCAAA+AGG 0.400167 7_2:+80261066 Msa1080690:three_prime_UTR
ACACAGTGACAGTGCCTTCT+GGG 0.412469 7_2:-80259171 None:intergenic
AATAAATTAGGTGATAGTTT+CGG 0.421880 7_2:+80260835 Msa1080690:three_prime_UTR
AGCTCAACCAAAGGAGTGTT+GGG 0.428366 7_2:-80259075 None:intergenic
TTTGTTTAGTTGAGTGCTTA+CGG 0.430500 7_2:+80259022 Msa1080690:five_prime_UTR
CATCTGAGAGTATGTTATCA+TGG 0.431521 7_2:+80260721 Msa1080690:three_prime_UTR
ATCTTTCCTAGATATGAAAC+TGG 0.432788 7_2:+80260862 Msa1080690:three_prime_UTR
AATTTGAGAAGCTTGGATAA+GGG 0.433338 7_2:+80260538 Msa1080690:three_prime_UTR
AAACCGACCCTTCAAGCTAA+TGG 0.437576 7_2:-80259492 None:intergenic
AGGTTGTTGTGTAGAGTAAC+TGG 0.440719 7_2:-80259222 None:intergenic
GACACTTCTGTTGGTATGAC+AGG 0.448505 7_2:+80259431 Msa1080690:CDS
ACCAAAGGAGTGTTGGGAAT+AGG 0.450556 7_2:-80259069 None:intergenic
CAGATCTTTGACACTTCTGT+TGG 0.451786 7_2:+80259422 Msa1080690:CDS
ATAATATCGAATAGATGTAT+TGG 0.455322 7_2:-80260272 None:intergenic
TAATTGAGCATGTGGGTGTT+GGG 0.455367 7_2:-80259257 None:intergenic
GTATAGGGGTTGGAGTGATA+AGG 0.457284 7_2:+80261127 Msa1080690:three_prime_UTR
AGACAACGTAAGACAGGCTT+TGG 0.458074 7_2:+80259376 Msa1080690:CDS
ATTTAATATGCAAACTCAAA+AGG 0.468764 7_2:+80260358 Msa1080690:three_prime_UTR
TGGGTGTTGGGTGTCATGAA+TGG 0.469938 7_2:-80259245 None:intergenic
GTCGATGCTCGAGGTGAGCT+TGG 0.475623 7_2:+80259398 Msa1080690:CDS
ATAGTACCTTAGAAATTCTC+AGG 0.476842 7_2:-80259735 None:intergenic
TTACGTGACCATTAGCTTGA+AGG 0.478261 7_2:+80259484 Msa1080690:CDS
TTGGGCAACGGTATAGGGGT+TGG 0.479857 7_2:+80261117 Msa1080690:three_prime_UTR
CAGCTCAACCAAAGGAGTGT+TGG 0.486097 7_2:-80259076 None:intergenic
TTCCTCGACTATGCAGTCTC+TGG 0.487924 7_2:+80260462 Msa1080690:three_prime_UTR
TATGAGGTTGGTACTCCCCT+TGG 0.501393 7_2:+80260988 Msa1080690:three_prime_UTR
CTTCACACTGATTATGAGGT+TGG 0.501784 7_2:+80260976 Msa1080690:three_prime_UTR
TCCTTAATTGATACAAGTGT+TGG 0.503146 7_2:+80261048 Msa1080690:three_prime_UTR
ATAATTGAGCATGTGGGTGT+TGG 0.510622 7_2:-80259258 None:intergenic
AGCTGAGAGATTACTCGGTT+AGG 0.510807 7_2:+80260933 Msa1080690:three_prime_UTR
CCAAGCTTCTCAAATTGAGA+AGG 0.518775 7_2:-80260531 None:intergenic
ATATAGCAAGTGCAGATTGA+AGG 0.526037 7_2:+80259135 Msa1080690:five_prime_UTR
GTGTTGGGTGTCATGAATGG+AGG 0.530393 7_2:-80259242 None:intergenic
TGTAGTTGAACTGGTGGAGT+TGG 0.530566 7_2:+80259454 Msa1080690:CDS
ATTTGAGAAGCTTGGATAAG+GGG 0.534463 7_2:+80260539 Msa1080690:three_prime_UTR
GTCACGTCACTAATCAAACT+TGG 0.536699 7_2:-80260167 None:intergenic
TATGACAGGTGTAGTTGAAC+TGG 0.539229 7_2:+80259445 Msa1080690:CDS
TATCATTTGATCAAAAGGCT+AGG 0.544344 7_2:+80261071 Msa1080690:three_prime_UTR
CACAGAAGACAACGTAAGAC+AGG 0.550536 7_2:+80259370 Msa1080690:CDS
ATCATTTGATCAAAAGGCTA+GGG 0.553771 7_2:+80261072 Msa1080690:three_prime_UTR
CAAAAGGCTAGGGAGTGATA+AGG 0.553860 7_2:+80261082 Msa1080690:three_prime_UTR
TGACTTGGTGATTTGGGCAA+CGG 0.561343 7_2:+80261105 Msa1080690:three_prime_UTR
ATGAAAACAACTTTGCCGCT+AGG 0.563348 7_2:+80260249 Msa1080690:three_prime_UTR
TGGTAGAGAACTTCTTCCAA+GGG 0.564592 7_2:-80261004 None:intergenic
TACGTGACCATTAGCTTGAA+GGG 0.566065 7_2:+80259485 Msa1080690:CDS
CTTGTTGTACTCATGAGAAG+TGG 0.569532 7_2:-80259281 None:intergenic
GATGAAGCTGAGAGATTACT+CGG 0.571310 7_2:+80260928 Msa1080690:three_prime_UTR
TGACCATTAGCTTGAAGGGT+CGG 0.573287 7_2:+80259489 Msa1080690:CDS
AACCTCATAATCAGTGTGAA+GGG 0.575517 7_2:-80260974 None:intergenic
TTGTCTTCTGTGAGGTCAAG+TGG 0.576356 7_2:-80259359 None:intergenic
TGTTATCATGGAAACATCAC+AGG 0.578970 7_2:+80260733 Msa1080690:three_prime_UTR
ATGGTAGAGAACTTCTTCCA+AGG 0.581069 7_2:-80261005 None:intergenic
TGTTGTGTAGAGTAACTGGT+AGG 0.593892 7_2:-80259218 None:intergenic
TTCAAGCTAATGGTCACGTA+AGG 0.597217 7_2:-80259482 None:intergenic
TGATTTGGGCAACGGTATAG+GGG 0.599868 7_2:+80261113 Msa1080690:three_prime_UTR
CAACCTCATAATCAGTGTGA+AGG 0.599974 7_2:-80260975 None:intergenic
GATAATTAGCAAGTCTGGCA+AGG 0.601106 7_2:-80259535 None:intergenic
TAGGGAGTGATAAGGTGACT+TGG 0.608066 7_2:+80261090 Msa1080690:three_prime_UTR
GTTGAACTGGTGGAGTTGGA+TGG 0.610128 7_2:+80259458 Msa1080690:CDS
AAGACTAGAATGTCTGAATG+AGG 0.614322 7_2:+80260125 Msa1080690:intron
ACCTCATAATCAGTGTGAAG+GGG 0.631211 7_2:-80260973 None:intergenic
GAGCATGTCTCTATCCCAGA+AGG 0.636939 7_2:+80259157 Msa1080690:exon
ACACGAAACAGCTCAACCAA+AGG 0.637467 7_2:-80259084 None:intergenic
CAGGCTTTGGTCGATGCTCG+AGG 0.637657 7_2:+80259389 Msa1080690:CDS
CACTTCTCATGAGTACAACA+AGG 0.638760 7_2:+80259282 Msa1080690:CDS
GTCTTACGTTGTCTTCTGTG+AGG 0.639028 7_2:-80259367 None:intergenic
GACAGGTGTAGTTGAACTGG+TGG 0.640631 7_2:+80259448 Msa1080690:CDS
CAACAAGGTGTATACTGCGA+AGG 0.641582 7_2:+80259297 Msa1080690:CDS
TACCAGAGACTGCATAGTCG+AGG 0.649684 7_2:-80260464 None:intergenic
TAAGAAGCTTGAAGCATCAG+TGG 0.650396 7_2:-80260618 None:intergenic
GAATAGATGTATTGGCCTAG+CGG 0.650539 7_2:-80260264 None:intergenic
GAAGTGGATAATTGAGCATG+TGG 0.651338 7_2:-80259265 None:intergenic
GTTGTGTAGAGTAACTGGTA+GGG 0.670609 7_2:-80259217 None:intergenic
GTGTAGAGTAACTGGTAGGG+TGG 0.682532 7_2:-80259214 None:intergenic
TCTTCTGTGAGGTCAAGTGG+CGG 0.692555 7_2:-80259356 None:intergenic
AAGTGGATAATTGAGCATGT+GGG 0.695100 7_2:-80259264 None:intergenic
GAGGCGTTGAAATGTTAATG+TGG 0.700092 7_2:+80260144 Msa1080690:three_prime_UTR
GGTAGAGAACTTCTTCCAAG+GGG 0.716092 7_2:-80261003 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTGTTTTATTTTTTTT+AGG + chr7_2:80259783-80259802 Msa1080690:intron 10.0%
!!! GTTTTTGTTTTATTTTTTTT+AGG + chr7_2:80259783-80259802 Msa1080690:intron 10.0%
!! TCAAAAAAGAAATCTAAATT+TGG + chr7_2:80260012-80260031 Msa1080690:intron 15.0%
!! CAAAAAAAATTAATGCATAT+AGG - chr7_2:80260103-80260122 None:intergenic 15.0%
!! TTGTGAACATTTAATAAATT+AGG + chr7_2:80260823-80260842 Msa1080690:three_prime_UTR 15.0%
!! TCAAAAAAGAAATCTAAATT+TGG + chr7_2:80260012-80260031 Msa1080690:intron 15.0%
!! CAAAAAAAATTAATGCATAT+AGG - chr7_2:80260103-80260122 None:intergenic 15.0%
!! TTGTGAACATTTAATAAATT+AGG + chr7_2:80260823-80260842 Msa1080690:three_prime_UTR 15.0%
!!! CTTGTTTACTTTTTATGTTT+TGG + chr7_2:80259658-80259677 Msa1080690:intron 20.0%
!! ATAAAACAAAAACCAAATAG+TGG - chr7_2:80259776-80259795 None:intergenic 20.0%
!! ACAGTTAATATTGATACATA+AGG - chr7_2:80259936-80259955 None:intergenic 20.0%
!! TTATGTATCAATATTAACTG+TGG + chr7_2:80259935-80259954 Msa1080690:intron 20.0%
!!! TAGAAATTATGCTTTTAAAG+CGG + chr7_2:80260192-80260211 Msa1080690:three_prime_UTR 20.0%
!! ATAATATCGAATAGATGTAT+TGG - chr7_2:80260275-80260294 None:intergenic 20.0%
!! ATTTAATATGCAAACTCAAA+AGG + chr7_2:80260358-80260377 Msa1080690:three_prime_UTR 20.0%
!!! AATTGTTTTAATTAGCAGTT+AGG + chr7_2:80260403-80260422 Msa1080690:three_prime_UTR 20.0%
!! AATAAATTAGGTGATAGTTT+CGG + chr7_2:80260835-80260854 Msa1080690:three_prime_UTR 20.0%
!! AATAAAAAGACACTGATATA+TGG - chr7_2:80260891-80260910 None:intergenic 20.0%
!!! CTTGTTTACTTTTTATGTTT+TGG + chr7_2:80259658-80259677 Msa1080690:intron 20.0%
!! ATAAAACAAAAACCAAATAG+TGG - chr7_2:80259776-80259795 None:intergenic 20.0%
!! ACAGTTAATATTGATACATA+AGG - chr7_2:80259936-80259955 None:intergenic 20.0%
!! TTATGTATCAATATTAACTG+TGG + chr7_2:80259935-80259954 Msa1080690:intron 20.0%
!!! TAGAAATTATGCTTTTAAAG+CGG + chr7_2:80260192-80260211 Msa1080690:three_prime_UTR 20.0%
!! ATAATATCGAATAGATGTAT+TGG - chr7_2:80260275-80260294 None:intergenic 20.0%
!! ATTTAATATGCAAACTCAAA+AGG + chr7_2:80260358-80260377 Msa1080690:three_prime_UTR 20.0%
!!! AATTGTTTTAATTAGCAGTT+AGG + chr7_2:80260403-80260422 Msa1080690:three_prime_UTR 20.0%
!! AATAAATTAGGTGATAGTTT+CGG + chr7_2:80260835-80260854 Msa1080690:three_prime_UTR 20.0%
!! AATAAAAAGACACTGATATA+TGG - chr7_2:80260891-80260910 None:intergenic 20.0%
!!! ACTTTTTATGTTTTGGTTTC+AGG + chr7_2:80259665-80259684 Msa1080690:intron 25.0%
! CATAGAAAACGAAAAACAAT+TGG + chr7_2:80259704-80259723 Msa1080690:CDS 25.0%
!!! ACTTTTTATGTTTTGGTTTC+AGG + chr7_2:80259665-80259684 Msa1080690:intron 25.0%
! CATAGAAAACGAAAAACAAT+TGG + chr7_2:80259704-80259723 Msa1080690:CDS 25.0%
TTTGTTTAGTTGAGTGCTTA+CGG + chr7_2:80259022-80259041 Msa1080690:five_prime_UTR 30.0%
! AACTCTTGCTATAGAAATTC+AGG + chr7_2:80259111-80259130 Msa1080690:five_prime_UTR 30.0%
! TTTGAGATAATTAGCAAGTC+TGG - chr7_2:80259543-80259562 None:intergenic 30.0%
!! GAAGTTTGCTTTTGCATTTT+GGG - chr7_2:80259626-80259645 None:intergenic 30.0%
!! TGAAGTTTGCTTTTGCATTT+TGG - chr7_2:80259627-80259646 None:intergenic 30.0%
ATAGTACCTTAGAAATTCTC+AGG - chr7_2:80259738-80259757 None:intergenic 30.0%
TGGATTCAATTCAAAAACAC+AGG + chr7_2:80260222-80260241 Msa1080690:three_prime_UTR 30.0%
GGATTCAATTCAAAAACACA+GGG + chr7_2:80260223-80260242 Msa1080690:three_prime_UTR 30.0%
AGGAAACAACAACTCTTAAA+AGG - chr7_2:80260447-80260466 None:intergenic 30.0%
AATTTGAGAAGCTTGGATAA+GGG + chr7_2:80260538-80260557 Msa1080690:three_prime_UTR 30.0%
ATCTTTCCTAGATATGAAAC+TGG + chr7_2:80260862-80260881 Msa1080690:three_prime_UTR 30.0%
ACACAAGTACAAAAAGAAGA+TGG - chr7_2:80261027-80261046 None:intergenic 30.0%
TCCTTAATTGATACAAGTGT+TGG + chr7_2:80261048-80261067 Msa1080690:three_prime_UTR 30.0%
ACCAACACTTGTATCAATTA+AGG - chr7_2:80261052-80261071 None:intergenic 30.0%
GTTGGTATCATTTGATCAAA+AGG + chr7_2:80261066-80261085 Msa1080690:three_prime_UTR 30.0%
TATCATTTGATCAAAAGGCT+AGG + chr7_2:80261071-80261090 Msa1080690:three_prime_UTR 30.0%
ATCATTTGATCAAAAGGCTA+GGG + chr7_2:80261072-80261091 Msa1080690:three_prime_UTR 30.0%
TTTGTTTAGTTGAGTGCTTA+CGG + chr7_2:80259022-80259041 Msa1080690:five_prime_UTR 30.0%
! AACTCTTGCTATAGAAATTC+AGG + chr7_2:80259111-80259130 Msa1080690:five_prime_UTR 30.0%
! TTTGAGATAATTAGCAAGTC+TGG - chr7_2:80259543-80259562 None:intergenic 30.0%
!! GAAGTTTGCTTTTGCATTTT+GGG - chr7_2:80259626-80259645 None:intergenic 30.0%
!! TGAAGTTTGCTTTTGCATTT+TGG - chr7_2:80259627-80259646 None:intergenic 30.0%
ATAGTACCTTAGAAATTCTC+AGG - chr7_2:80259738-80259757 None:intergenic 30.0%
TGGATTCAATTCAAAAACAC+AGG + chr7_2:80260222-80260241 Msa1080690:three_prime_UTR 30.0%
GGATTCAATTCAAAAACACA+GGG + chr7_2:80260223-80260242 Msa1080690:three_prime_UTR 30.0%
AGGAAACAACAACTCTTAAA+AGG - chr7_2:80260447-80260466 None:intergenic 30.0%
AATTTGAGAAGCTTGGATAA+GGG + chr7_2:80260538-80260557 Msa1080690:three_prime_UTR 30.0%
ATCTTTCCTAGATATGAAAC+TGG + chr7_2:80260862-80260881 Msa1080690:three_prime_UTR 30.0%
ACACAAGTACAAAAAGAAGA+TGG - chr7_2:80261027-80261046 None:intergenic 30.0%
TCCTTAATTGATACAAGTGT+TGG + chr7_2:80261048-80261067 Msa1080690:three_prime_UTR 30.0%
ACCAACACTTGTATCAATTA+AGG - chr7_2:80261052-80261071 None:intergenic 30.0%
GTTGGTATCATTTGATCAAA+AGG + chr7_2:80261066-80261085 Msa1080690:three_prime_UTR 30.0%
TATCATTTGATCAAAAGGCT+AGG + chr7_2:80261071-80261090 Msa1080690:three_prime_UTR 30.0%
ATCATTTGATCAAAAGGCTA+GGG + chr7_2:80261072-80261091 Msa1080690:three_prime_UTR 30.0%
TTGTTTAGTTGAGTGCTTAC+GGG + chr7_2:80259023-80259042 Msa1080690:five_prime_UTR 35.0%
ATATAGCAAGTGCAGATTGA+AGG + chr7_2:80259135-80259154 Msa1080690:five_prime_UTR 35.0%
AAGTGGATAATTGAGCATGT+GGG - chr7_2:80259267-80259286 None:intergenic 35.0%
ACTGAAAGAGATGCTGATAA+AGG - chr7_2:80259332-80259351 None:intergenic 35.0%
! TTGGTTTCAGGAGATTTTAG+AGG + chr7_2:80259677-80259696 Msa1080690:intron 35.0%
GATAGTCCTGAGAATTTCTA+AGG + chr7_2:80259729-80259748 Msa1080690:CDS 35.0%
! CTAAGGTACTATATTACGCA+CGG + chr7_2:80259746-80259765 Msa1080690:intron 35.0%
AAGACTAGAATGTCTGAATG+AGG + chr7_2:80260125-80260144 Msa1080690:intron 35.0%
CAATTTGAGAAGCTTGGATA+AGG + chr7_2:80260537-80260556 Msa1080690:three_prime_UTR 35.0%
ATTTGAGAAGCTTGGATAAG+GGG + chr7_2:80260539-80260558 Msa1080690:three_prime_UTR 35.0%
! CATCTGAGAGTATGTTATCA+TGG + chr7_2:80260721-80260740 Msa1080690:three_prime_UTR 35.0%
TGTTATCATGGAAACATCAC+AGG + chr7_2:80260733-80260752 Msa1080690:three_prime_UTR 35.0%
AACCTCATAATCAGTGTGAA+GGG - chr7_2:80260977-80260996 None:intergenic 35.0%
!! ATAAGGTGACTTGGTGATTT+GGG + chr7_2:80261099-80261118 Msa1080690:three_prime_UTR 35.0%
TTGTTTAGTTGAGTGCTTAC+GGG + chr7_2:80259023-80259042 Msa1080690:five_prime_UTR 35.0%
ATATAGCAAGTGCAGATTGA+AGG + chr7_2:80259135-80259154 Msa1080690:five_prime_UTR 35.0%
AAGTGGATAATTGAGCATGT+GGG - chr7_2:80259267-80259286 None:intergenic 35.0%
ACTGAAAGAGATGCTGATAA+AGG - chr7_2:80259332-80259351 None:intergenic 35.0%
! TTGGTTTCAGGAGATTTTAG+AGG + chr7_2:80259677-80259696 Msa1080690:intron 35.0%
GATAGTCCTGAGAATTTCTA+AGG + chr7_2:80259729-80259748 Msa1080690:CDS 35.0%
! CTAAGGTACTATATTACGCA+CGG + chr7_2:80259746-80259765 Msa1080690:intron 35.0%
AAGACTAGAATGTCTGAATG+AGG + chr7_2:80260125-80260144 Msa1080690:intron 35.0%
CAATTTGAGAAGCTTGGATA+AGG + chr7_2:80260537-80260556 Msa1080690:three_prime_UTR 35.0%
ATTTGAGAAGCTTGGATAAG+GGG + chr7_2:80260539-80260558 Msa1080690:three_prime_UTR 35.0%
! CATCTGAGAGTATGTTATCA+TGG + chr7_2:80260721-80260740 Msa1080690:three_prime_UTR 35.0%
TGTTATCATGGAAACATCAC+AGG + chr7_2:80260733-80260752 Msa1080690:three_prime_UTR 35.0%
AACCTCATAATCAGTGTGAA+GGG - chr7_2:80260977-80260996 None:intergenic 35.0%
!! ATAAGGTGACTTGGTGATTT+GGG + chr7_2:80261099-80261118 Msa1080690:three_prime_UTR 35.0%
GTTGTGTAGAGTAACTGGTA+GGG - chr7_2:80259220-80259239 None:intergenic 40.0%
TGTTGTGTAGAGTAACTGGT+AGG - chr7_2:80259221-80259240 None:intergenic 40.0%
AGGTTGTTGTGTAGAGTAAC+TGG - chr7_2:80259225-80259244 None:intergenic 40.0%
TAATTGAGCATGTGGGTGTT+GGG - chr7_2:80259260-80259279 None:intergenic 40.0%
ATAATTGAGCATGTGGGTGT+TGG - chr7_2:80259261-80259280 None:intergenic 40.0%
GAAGTGGATAATTGAGCATG+TGG - chr7_2:80259268-80259287 None:intergenic 40.0%
! CTTGTTGTACTCATGAGAAG+TGG - chr7_2:80259284-80259303 None:intergenic 40.0%
CACTTCTCATGAGTACAACA+AGG + chr7_2:80259282-80259301 Msa1080690:CDS 40.0%
CAGATCTTTGACACTTCTGT+TGG + chr7_2:80259422-80259441 Msa1080690:CDS 40.0%
TATGACAGGTGTAGTTGAAC+TGG + chr7_2:80259445-80259464 Msa1080690:CDS 40.0%
TTCAAGCTAATGGTCACGTA+AGG - chr7_2:80259485-80259504 None:intergenic 40.0%
! TTACGTGACCATTAGCTTGA+AGG + chr7_2:80259484-80259503 Msa1080690:CDS 40.0%
! TACGTGACCATTAGCTTGAA+GGG + chr7_2:80259485-80259504 Msa1080690:CDS 40.0%
GATAATTAGCAAGTCTGGCA+AGG - chr7_2:80259538-80259557 None:intergenic 40.0%
! AAAGAAGCACAAGAGAGAAG+AGG - chr7_2:80259583-80259602 None:intergenic 40.0%
!! GAGGCGTTGAAATGTTAATG+TGG + chr7_2:80260144-80260163 Msa1080690:three_prime_UTR 40.0%
GTCACGTCACTAATCAAACT+TGG - chr7_2:80260170-80260189 None:intergenic 40.0%
ATGAAAACAACTTTGCCGCT+AGG + chr7_2:80260249-80260268 Msa1080690:three_prime_UTR 40.0%
! GAATAGATGTATTGGCCTAG+CGG - chr7_2:80260267-80260286 None:intergenic 40.0%
CCAAGCTTCTCAAATTGAGA+AGG - chr7_2:80260534-80260553 None:intergenic 40.0%
CCTTCTCAATTTGAGAAGCT+TGG + chr7_2:80260531-80260550 Msa1080690:three_prime_UTR 40.0%
! TAAGAAGCTTGAAGCATCAG+TGG - chr7_2:80260621-80260640 None:intergenic 40.0%
TGGTCACCAGTTTCATATCT+AGG - chr7_2:80260871-80260890 None:intergenic 40.0%
GATGAAGCTGAGAGATTACT+CGG + chr7_2:80260928-80260947 Msa1080690:three_prime_UTR 40.0%
ACCTCATAATCAGTGTGAAG+GGG - chr7_2:80260976-80260995 None:intergenic 40.0%
CAACCTCATAATCAGTGTGA+AGG - chr7_2:80260978-80260997 None:intergenic 40.0%
! CTTCACACTGATTATGAGGT+TGG + chr7_2:80260976-80260995 Msa1080690:three_prime_UTR 40.0%
TGGTAGAGAACTTCTTCCAA+GGG - chr7_2:80261007-80261026 None:intergenic 40.0%
ATGGTAGAGAACTTCTTCCA+AGG - chr7_2:80261008-80261027 None:intergenic 40.0%
!! GATAAGGTGACTTGGTGATT+TGG + chr7_2:80261098-80261117 Msa1080690:three_prime_UTR 40.0%
GTTGTGTAGAGTAACTGGTA+GGG - chr7_2:80259220-80259239 None:intergenic 40.0%
TGTTGTGTAGAGTAACTGGT+AGG - chr7_2:80259221-80259240 None:intergenic 40.0%
AGGTTGTTGTGTAGAGTAAC+TGG - chr7_2:80259225-80259244 None:intergenic 40.0%
TAATTGAGCATGTGGGTGTT+GGG - chr7_2:80259260-80259279 None:intergenic 40.0%
ATAATTGAGCATGTGGGTGT+TGG - chr7_2:80259261-80259280 None:intergenic 40.0%
GAAGTGGATAATTGAGCATG+TGG - chr7_2:80259268-80259287 None:intergenic 40.0%
! CTTGTTGTACTCATGAGAAG+TGG - chr7_2:80259284-80259303 None:intergenic 40.0%
CACTTCTCATGAGTACAACA+AGG + chr7_2:80259282-80259301 Msa1080690:CDS 40.0%
CAGATCTTTGACACTTCTGT+TGG + chr7_2:80259422-80259441 Msa1080690:CDS 40.0%
TATGACAGGTGTAGTTGAAC+TGG + chr7_2:80259445-80259464 Msa1080690:CDS 40.0%
TTCAAGCTAATGGTCACGTA+AGG - chr7_2:80259485-80259504 None:intergenic 40.0%
! TTACGTGACCATTAGCTTGA+AGG + chr7_2:80259484-80259503 Msa1080690:CDS 40.0%
! TACGTGACCATTAGCTTGAA+GGG + chr7_2:80259485-80259504 Msa1080690:CDS 40.0%
GATAATTAGCAAGTCTGGCA+AGG - chr7_2:80259538-80259557 None:intergenic 40.0%
! AAAGAAGCACAAGAGAGAAG+AGG - chr7_2:80259583-80259602 None:intergenic 40.0%
!! GAGGCGTTGAAATGTTAATG+TGG + chr7_2:80260144-80260163 Msa1080690:three_prime_UTR 40.0%
GTCACGTCACTAATCAAACT+TGG - chr7_2:80260170-80260189 None:intergenic 40.0%
ATGAAAACAACTTTGCCGCT+AGG + chr7_2:80260249-80260268 Msa1080690:three_prime_UTR 40.0%
! GAATAGATGTATTGGCCTAG+CGG - chr7_2:80260267-80260286 None:intergenic 40.0%
CCAAGCTTCTCAAATTGAGA+AGG - chr7_2:80260534-80260553 None:intergenic 40.0%
CCTTCTCAATTTGAGAAGCT+TGG + chr7_2:80260531-80260550 Msa1080690:three_prime_UTR 40.0%
! TAAGAAGCTTGAAGCATCAG+TGG - chr7_2:80260621-80260640 None:intergenic 40.0%
TGGTCACCAGTTTCATATCT+AGG - chr7_2:80260871-80260890 None:intergenic 40.0%
GATGAAGCTGAGAGATTACT+CGG + chr7_2:80260928-80260947 Msa1080690:three_prime_UTR 40.0%
ACCTCATAATCAGTGTGAAG+GGG - chr7_2:80260976-80260995 None:intergenic 40.0%
CAACCTCATAATCAGTGTGA+AGG - chr7_2:80260978-80260997 None:intergenic 40.0%
! CTTCACACTGATTATGAGGT+TGG + chr7_2:80260976-80260995 Msa1080690:three_prime_UTR 40.0%
TGGTAGAGAACTTCTTCCAA+GGG - chr7_2:80261007-80261026 None:intergenic 40.0%
ATGGTAGAGAACTTCTTCCA+AGG - chr7_2:80261008-80261027 None:intergenic 40.0%
!! GATAAGGTGACTTGGTGATT+TGG + chr7_2:80261098-80261117 Msa1080690:three_prime_UTR 40.0%
!! GGAGTGTTGGGAATAGGATA+TGG - chr7_2:80259066-80259085 None:intergenic 45.0%
TCCTATTCCCAACACTCCTT+TGG + chr7_2:80259068-80259087 Msa1080690:five_prime_UTR 45.0%
!! ACCAAAGGAGTGTTGGGAAT+AGG - chr7_2:80259072-80259091 None:intergenic 45.0%
!! AGCTCAACCAAAGGAGTGTT+GGG - chr7_2:80259078-80259097 None:intergenic 45.0%
ACACGAAACAGCTCAACCAA+AGG - chr7_2:80259087-80259106 None:intergenic 45.0%
CAACAAGGTGTATACTGCGA+AGG + chr7_2:80259297-80259316 Msa1080690:CDS 45.0%
TTGTCTTCTGTGAGGTCAAG+TGG - chr7_2:80259362-80259381 None:intergenic 45.0%
GTCTTACGTTGTCTTCTGTG+AGG - chr7_2:80259370-80259389 None:intergenic 45.0%
CACAGAAGACAACGTAAGAC+AGG + chr7_2:80259370-80259389 Msa1080690:CDS 45.0%
AGACAACGTAAGACAGGCTT+TGG + chr7_2:80259376-80259395 Msa1080690:CDS 45.0%
GACACTTCTGTTGGTATGAC+AGG + chr7_2:80259431-80259450 Msa1080690:CDS 45.0%
TGTAGTTGAACTGGTGGAGT+TGG + chr7_2:80259454-80259473 Msa1080690:CDS 45.0%
! TGACCATTAGCTTGAAGGGT+CGG + chr7_2:80259489-80259508 Msa1080690:CDS 45.0%
AAACCGACCCTTCAAGCTAA+TGG - chr7_2:80259495-80259514 None:intergenic 45.0%
!! TTAGCTTGAAGGGTCGGTTT+TGG + chr7_2:80259495-80259514 Msa1080690:CDS 45.0%
ACAAGAGAGAAGAGGCTTAC+AGG - chr7_2:80259575-80259594 None:intergenic 45.0%
CACACCCTCAAATGCATACA+GGG - chr7_2:80259961-80259980 None:intergenic 45.0%
AGCTGAGAGATTACTCGGTT+AGG + chr7_2:80260933-80260952 Msa1080690:three_prime_UTR 45.0%
! TCCCCTTCACACTGATTATG+AGG + chr7_2:80260972-80260991 Msa1080690:three_prime_UTR 45.0%
GGTAGAGAACTTCTTCCAAG+GGG - chr7_2:80261006-80261025 None:intergenic 45.0%
CAAAAGGCTAGGGAGTGATA+AGG + chr7_2:80261082-80261101 Msa1080690:three_prime_UTR 45.0%
TAGGGAGTGATAAGGTGACT+TGG + chr7_2:80261090-80261109 Msa1080690:three_prime_UTR 45.0%
!! TGACTTGGTGATTTGGGCAA+CGG + chr7_2:80261105-80261124 Msa1080690:three_prime_UTR 45.0%
! GTGATTTGGGCAACGGTATA+GGG + chr7_2:80261112-80261131 Msa1080690:three_prime_UTR 45.0%
! TGATTTGGGCAACGGTATAG+GGG + chr7_2:80261113-80261132 Msa1080690:three_prime_UTR 45.0%
GTATAGGGGTTGGAGTGATA+AGG + chr7_2:80261127-80261146 Msa1080690:three_prime_UTR 45.0%
!! GGAGTGTTGGGAATAGGATA+TGG - chr7_2:80259066-80259085 None:intergenic 45.0%
TCCTATTCCCAACACTCCTT+TGG + chr7_2:80259068-80259087 Msa1080690:five_prime_UTR 45.0%
!! ACCAAAGGAGTGTTGGGAAT+AGG - chr7_2:80259072-80259091 None:intergenic 45.0%
!! AGCTCAACCAAAGGAGTGTT+GGG - chr7_2:80259078-80259097 None:intergenic 45.0%
ACACGAAACAGCTCAACCAA+AGG - chr7_2:80259087-80259106 None:intergenic 45.0%
CAACAAGGTGTATACTGCGA+AGG + chr7_2:80259297-80259316 Msa1080690:CDS 45.0%
TTGTCTTCTGTGAGGTCAAG+TGG - chr7_2:80259362-80259381 None:intergenic 45.0%
GTCTTACGTTGTCTTCTGTG+AGG - chr7_2:80259370-80259389 None:intergenic 45.0%
CACAGAAGACAACGTAAGAC+AGG + chr7_2:80259370-80259389 Msa1080690:CDS 45.0%
AGACAACGTAAGACAGGCTT+TGG + chr7_2:80259376-80259395 Msa1080690:CDS 45.0%
GACACTTCTGTTGGTATGAC+AGG + chr7_2:80259431-80259450 Msa1080690:CDS 45.0%
TGTAGTTGAACTGGTGGAGT+TGG + chr7_2:80259454-80259473 Msa1080690:CDS 45.0%
! TGACCATTAGCTTGAAGGGT+CGG + chr7_2:80259489-80259508 Msa1080690:CDS 45.0%
AAACCGACCCTTCAAGCTAA+TGG - chr7_2:80259495-80259514 None:intergenic 45.0%
!! TTAGCTTGAAGGGTCGGTTT+TGG + chr7_2:80259495-80259514 Msa1080690:CDS 45.0%
ACAAGAGAGAAGAGGCTTAC+AGG - chr7_2:80259575-80259594 None:intergenic 45.0%
CACACCCTCAAATGCATACA+GGG - chr7_2:80259961-80259980 None:intergenic 45.0%
AGCTGAGAGATTACTCGGTT+AGG + chr7_2:80260933-80260952 Msa1080690:three_prime_UTR 45.0%
! TCCCCTTCACACTGATTATG+AGG + chr7_2:80260972-80260991 Msa1080690:three_prime_UTR 45.0%
GGTAGAGAACTTCTTCCAAG+GGG - chr7_2:80261006-80261025 None:intergenic 45.0%
CAAAAGGCTAGGGAGTGATA+AGG + chr7_2:80261082-80261101 Msa1080690:three_prime_UTR 45.0%
TAGGGAGTGATAAGGTGACT+TGG + chr7_2:80261090-80261109 Msa1080690:three_prime_UTR 45.0%
!! TGACTTGGTGATTTGGGCAA+CGG + chr7_2:80261105-80261124 Msa1080690:three_prime_UTR 45.0%
! GTGATTTGGGCAACGGTATA+GGG + chr7_2:80261112-80261131 Msa1080690:three_prime_UTR 45.0%
! TGATTTGGGCAACGGTATAG+GGG + chr7_2:80261113-80261132 Msa1080690:three_prime_UTR 45.0%
! CAGCTCAACCAAAGGAGTGT+TGG - chr7_2:80259079-80259098 None:intergenic 50.0%
GAGCATGTCTCTATCCCAGA+AGG + chr7_2:80259157-80259176 Msa1080690:exon 50.0%
ACACAGTGACAGTGCCTTCT+GGG - chr7_2:80259174-80259193 None:intergenic 50.0%
AACACAGTGACAGTGCCTTC+TGG - chr7_2:80259175-80259194 None:intergenic 50.0%
GTGTAGAGTAACTGGTAGGG+TGG - chr7_2:80259217-80259236 None:intergenic 50.0%
! GTGTTGGGTGTCATGAATGG+AGG - chr7_2:80259245-80259264 None:intergenic 50.0%
!! TGGGTGTTGGGTGTCATGAA+TGG - chr7_2:80259248-80259267 None:intergenic 50.0%
TCTTCTGTGAGGTCAAGTGG+CGG - chr7_2:80259359-80259378 None:intergenic 50.0%
GACAGGTGTAGTTGAACTGG+TGG + chr7_2:80259448-80259467 Msa1080690:CDS 50.0%
GTTGAACTGGTGGAGTTGGA+TGG + chr7_2:80259458-80259477 Msa1080690:CDS 50.0%
TGTGGCCCTGTATGCATTTG+AGG + chr7_2:80259953-80259972 Msa1080690:intron 50.0%
GTGGCCCTGTATGCATTTGA+GGG + chr7_2:80259954-80259973 Msa1080690:intron 50.0%
GCACACCCTCAAATGCATAC+AGG - chr7_2:80259962-80259981 None:intergenic 50.0%
!!! GCTTTTAAAGCGGCGCAACA+TGG + chr7_2:80260202-80260221 Msa1080690:three_prime_UTR 50.0%
TTCCTCGACTATGCAGTCTC+TGG + chr7_2:80260462-80260481 Msa1080690:three_prime_UTR 50.0%
TACCAGAGACTGCATAGTCG+AGG - chr7_2:80260467-80260486 None:intergenic 50.0%
!! TATGAGGTTGGTACTCCCCT+TGG + chr7_2:80260988-80261007 Msa1080690:three_prime_UTR 50.0%
! GGTGATTTGGGCAACGGTAT+AGG + chr7_2:80261111-80261130 Msa1080690:three_prime_UTR 50.0%
! CAGCTCAACCAAAGGAGTGT+TGG - chr7_2:80259079-80259098 None:intergenic 50.0%
GAGCATGTCTCTATCCCAGA+AGG + chr7_2:80259157-80259176 Msa1080690:exon 50.0%
ACACAGTGACAGTGCCTTCT+GGG - chr7_2:80259174-80259193 None:intergenic 50.0%
AACACAGTGACAGTGCCTTC+TGG - chr7_2:80259175-80259194 None:intergenic 50.0%
GTGTAGAGTAACTGGTAGGG+TGG - chr7_2:80259217-80259236 None:intergenic 50.0%
! GTGTTGGGTGTCATGAATGG+AGG - chr7_2:80259245-80259264 None:intergenic 50.0%
!! TGGGTGTTGGGTGTCATGAA+TGG - chr7_2:80259248-80259267 None:intergenic 50.0%
TCTTCTGTGAGGTCAAGTGG+CGG - chr7_2:80259359-80259378 None:intergenic 50.0%
GACAGGTGTAGTTGAACTGG+TGG + chr7_2:80259448-80259467 Msa1080690:CDS 50.0%
GTTGAACTGGTGGAGTTGGA+TGG + chr7_2:80259458-80259477 Msa1080690:CDS 50.0%
TGTGGCCCTGTATGCATTTG+AGG + chr7_2:80259953-80259972 Msa1080690:intron 50.0%
GTGGCCCTGTATGCATTTGA+GGG + chr7_2:80259954-80259973 Msa1080690:intron 50.0%
GCACACCCTCAAATGCATAC+AGG - chr7_2:80259962-80259981 None:intergenic 50.0%
!!! GCTTTTAAAGCGGCGCAACA+TGG + chr7_2:80260202-80260221 Msa1080690:three_prime_UTR 50.0%
TTCCTCGACTATGCAGTCTC+TGG + chr7_2:80260462-80260481 Msa1080690:three_prime_UTR 50.0%
TACCAGAGACTGCATAGTCG+AGG - chr7_2:80260467-80260486 None:intergenic 50.0%
!! TATGAGGTTGGTACTCCCCT+TGG + chr7_2:80260988-80261007 Msa1080690:three_prime_UTR 50.0%
! GGTGATTTGGGCAACGGTAT+AGG + chr7_2:80261111-80261130 Msa1080690:three_prime_UTR 50.0%
ACGCACGGCTTGCCACTATT+TGG + chr7_2:80259761-80259780 Msa1080690:intron 55.0%
TTGGGCAACGGTATAGGGGT+TGG + chr7_2:80261117-80261136 Msa1080690:three_prime_UTR 55.0%
ACGCACGGCTTGCCACTATT+TGG + chr7_2:80259761-80259780 Msa1080690:intron 55.0%
TTGGGCAACGGTATAGGGGT+TGG + chr7_2:80261117-80261136 Msa1080690:three_prime_UTR 55.0%
! CAGGCTTTGGTCGATGCTCG+AGG + chr7_2:80259389-80259408 Msa1080690:CDS 60.0%
GTCGATGCTCGAGGTGAGCT+TGG + chr7_2:80259398-80259417 Msa1080690:CDS 60.0%
! CAGGCTTTGGTCGATGCTCG+AGG + chr7_2:80259389-80259408 Msa1080690:CDS 60.0%
GTCGATGCTCGAGGTGAGCT+TGG + chr7_2:80259398-80259417 Msa1080690:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 80259015 80261149 80259015 ID=Msa1080690;Name=Msa1080690
chr7_2 mRNA 80259015 80261149 80259015 ID=Msa1080690-mRNA-1;Parent=Msa1080690;Name=Msa1080690-mRNA-1;_AED=0.10;_eAED=0.10;_QI=146|1|1|1|0.5|0.33|3|1018|158
chr7_2 exon 80259015 80259574 80259015 ID=Msa1080690-mRNA-1:exon:20281;Parent=Msa1080690-mRNA-1
chr7_2 exon 80259687 80259750 80259687 ID=Msa1080690-mRNA-1:exon:20282;Parent=Msa1080690-mRNA-1
chr7_2 exon 80260133 80261149 80260133 ID=Msa1080690-mRNA-1:exon:20283;Parent=Msa1080690-mRNA-1
chr7_2 five_prime_UTR 80259015 80259160 80259015 ID=Msa1080690-mRNA-1:five_prime_utr;Parent=Msa1080690-mRNA-1
chr7_2 CDS 80259161 80259574 80259161 ID=Msa1080690-mRNA-1:cds;Parent=Msa1080690-mRNA-1
chr7_2 CDS 80259687 80259749 80259687 ID=Msa1080690-mRNA-1:cds;Parent=Msa1080690-mRNA-1
chr7_2 three_prime_UTR 80259750 80259750 80259750 ID=Msa1080690-mRNA-1:three_prime_utr;Parent=Msa1080690-mRNA-1
chr7_2 three_prime_UTR 80260133 80261149 80260133 ID=Msa1080690-mRNA-1:three_prime_utr;Parent=Msa1080690-mRNA-1
Gene Sequence

>Msa1080690

ATGTCTCTATCCCAGAAGGCACTGTCACTGTGTTGTAGCTCACTTAAACTATGCCACCCTACCAGTTACTCTACACAACAACCTCCATTCATGACACCCAACACCCACATGCTCAATTATCCACTTCTCATGAGTACAACAAGGTGTATACTGCGAAGGAAGTTGAAGCCTTTATCAGCATCTCTTTCAGTTGAACCGCCACTTGACCTCACAGAAGACAACGTAAGACAGGCTTTGGTCGATGCTCGAGGTGAGCTTGGTCAGATCTTTGACACTTCTGTTGGTATGACAGGTGTAGTTGAACTGGTGGAGTTGGATGGACCTTACGTGACCATTAGCTTGAAGGGTCGGTTTTGGCACAAACGTTCAACTGTCCTTGCCAGACTTGCTAATTATCTCAAACAGAGAATTCCTGAGATTTTAGAGGTTGACATAGAAAACGAAAAACAATTGGATGATAGTCCTGAGAATTTCTAA

Protein sequence

>Msa1080690

MSLSQKALSLCCSSLKLCHPTSYSTQQPPFMTPNTHMLNYPLLMSTTRCILRRKLKPLSASLSVEPPLDLTEDNVRQALVDARGELGQIFDTSVGMTGVVELVELDGPYVTISLKGRFWHKRSTVLARLANYLKQRIPEILEVDIENEKQLDDSPENF*