AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1080620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080620 MtrunA17_Chr7g0267161 95.570 158 7 0 1 158 1 158 1.65e-110 310
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080620 AT2G33180.1 76.344 93 22 0 66 158 74 166 1.54e-48 154

Find 98 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGAACATTTAATAAATT+AGG 0.202937 7_2:+80153801 Msa1080620:three_prime_UTR
GGTGATTTGGGCAACGGTAT+AGG 0.256823 7_2:+80154089 Msa1080620:three_prime_UTR
GTGATTTGGGCAACGGTATA+GGG 0.304559 7_2:+80154090 Msa1080620:three_prime_UTR
AACTCTTGCTATAGAAATTC+AGG 0.324340 7_2:+80152089 Msa1080620:five_prime_UTR
ACCAACACTTGTATCAATTA+AGG 0.328965 7_2:-80154027 None:intergenic
AGGAAACAACAACTCTTAAA+AGG 0.348485 7_2:-80153422 None:intergenic
GATAGTCCTGAGAATTTCTA+AGG 0.364684 7_2:+80152707 Msa1080620:CDS
GATAAGGTGACTTGGTGATT+TGG 0.366081 7_2:+80154076 Msa1080620:three_prime_UTR
CCTTCTCAATTTGAGAAGCT+TGG 0.375168 7_2:+80153509 Msa1080620:three_prime_UTR
ACTGAAAGAGATGCTGATAA+AGG 0.378200 7_2:-80152307 None:intergenic
TTTGAGATAATTAGCAAGTC+TGG 0.379651 7_2:-80152518 None:intergenic
TTAGCTTGAAGGGTCGGTTT+TGG 0.381453 7_2:+80152473 Msa1080620:CDS
TCCCCTTCACACTGATTATG+AGG 0.382972 7_2:+80153950 Msa1080620:three_prime_UTR
TCCTATTCCCAACACTCCTT+TGG 0.383151 7_2:+80152046 Msa1080620:five_prime_UTR
AACACAGTGACAGTGCCTTC+TGG 0.384818 7_2:-80152150 None:intergenic
GGAGTGTTGGGAATAGGATA+TGG 0.395725 7_2:-80152041 None:intergenic
TGGTCACCAGTTTCATATCT+AGG 0.397018 7_2:-80153846 None:intergenic
ATAAGGTGACTTGGTGATTT+GGG 0.397109 7_2:+80154077 Msa1080620:three_prime_UTR
TTGTTTAGTTGAGTGCTTAC+GGG 0.399777 7_2:+80152001 Msa1080620:five_prime_UTR
CAATTTGAGAAGCTTGGATA+AGG 0.399848 7_2:+80153515 Msa1080620:three_prime_UTR
GTTGGTATCATTTGATCAAA+AGG 0.400167 7_2:+80154044 Msa1080620:three_prime_UTR
ACACAGTGACAGTGCCTTCT+GGG 0.412469 7_2:-80152149 None:intergenic
AATAAATTAGGTGATAGTTT+CGG 0.421880 7_2:+80153813 Msa1080620:three_prime_UTR
AGCTCAACCAAAGGAGTGTT+GGG 0.428366 7_2:-80152053 None:intergenic
TTTGTTTAGTTGAGTGCTTA+CGG 0.430500 7_2:+80152000 Msa1080620:five_prime_UTR
CATCTGAGAGTATGTTATCA+TGG 0.431521 7_2:+80153699 Msa1080620:three_prime_UTR
ATCTTTCCTAGATATGAAAC+TGG 0.432788 7_2:+80153840 Msa1080620:three_prime_UTR
AATTTGAGAAGCTTGGATAA+GGG 0.433338 7_2:+80153516 Msa1080620:three_prime_UTR
AAACCGACCCTTCAAGCTAA+TGG 0.437576 7_2:-80152470 None:intergenic
AGGTTGTTGTGTAGAGTAAC+TGG 0.440719 7_2:-80152200 None:intergenic
GACACTTCTGTTGGTATGAC+AGG 0.448505 7_2:+80152409 Msa1080620:CDS
ACCAAAGGAGTGTTGGGAAT+AGG 0.450556 7_2:-80152047 None:intergenic
CAGATCTTTGACACTTCTGT+TGG 0.451786 7_2:+80152400 Msa1080620:CDS
ATAATATCGAATAGATGTAT+TGG 0.455322 7_2:-80153250 None:intergenic
TAATTGAGCATGTGGGTGTT+GGG 0.455367 7_2:-80152235 None:intergenic
GTATAGGGGTTGGAGTGATA+AGG 0.457284 7_2:+80154105 Msa1080620:three_prime_UTR
AGACAACGTAAGACAGGCTT+TGG 0.458074 7_2:+80152354 Msa1080620:CDS
ATTTAATATGCAAACTCAAA+AGG 0.468764 7_2:+80153336 Msa1080620:three_prime_UTR
TGGGTGTTGGGTGTCATGAA+TGG 0.469938 7_2:-80152223 None:intergenic
GTCGATGCTCGAGGTGAGCT+TGG 0.475623 7_2:+80152376 Msa1080620:CDS
ATAGTACCTTAGAAATTCTC+AGG 0.476842 7_2:-80152713 None:intergenic
TTACGTGACCATTAGCTTGA+AGG 0.478261 7_2:+80152462 Msa1080620:CDS
TTGGGCAACGGTATAGGGGT+TGG 0.479857 7_2:+80154095 Msa1080620:three_prime_UTR
CAGCTCAACCAAAGGAGTGT+TGG 0.486097 7_2:-80152054 None:intergenic
TTCCTCGACTATGCAGTCTC+TGG 0.487924 7_2:+80153440 Msa1080620:three_prime_UTR
TATGAGGTTGGTACTCCCCT+TGG 0.501393 7_2:+80153966 Msa1080620:three_prime_UTR
CTTCACACTGATTATGAGGT+TGG 0.501784 7_2:+80153954 Msa1080620:three_prime_UTR
TCCTTAATTGATACAAGTGT+TGG 0.503146 7_2:+80154026 Msa1080620:three_prime_UTR
ATAATTGAGCATGTGGGTGT+TGG 0.510622 7_2:-80152236 None:intergenic
AGCTGAGAGATTACTCGGTT+AGG 0.510807 7_2:+80153911 Msa1080620:three_prime_UTR
CCAAGCTTCTCAAATTGAGA+AGG 0.518775 7_2:-80153509 None:intergenic
ATATAGCAAGTGCAGATTGA+AGG 0.526037 7_2:+80152113 Msa1080620:five_prime_UTR
GTGTTGGGTGTCATGAATGG+AGG 0.530393 7_2:-80152220 None:intergenic
TGTAGTTGAACTGGTGGAGT+TGG 0.530566 7_2:+80152432 Msa1080620:CDS
ATTTGAGAAGCTTGGATAAG+GGG 0.534463 7_2:+80153517 Msa1080620:three_prime_UTR
GTCACGTCACTAATCAAACT+TGG 0.536699 7_2:-80153145 None:intergenic
TATGACAGGTGTAGTTGAAC+TGG 0.539229 7_2:+80152423 Msa1080620:CDS
TATCATTTGATCAAAAGGCT+AGG 0.544344 7_2:+80154049 Msa1080620:three_prime_UTR
CACAGAAGACAACGTAAGAC+AGG 0.550536 7_2:+80152348 Msa1080620:CDS
ATCATTTGATCAAAAGGCTA+GGG 0.553771 7_2:+80154050 Msa1080620:three_prime_UTR
CAAAAGGCTAGGGAGTGATA+AGG 0.553860 7_2:+80154060 Msa1080620:three_prime_UTR
TGACTTGGTGATTTGGGCAA+CGG 0.561343 7_2:+80154083 Msa1080620:three_prime_UTR
ATGAAAACAACTTTGCCGCT+AGG 0.563348 7_2:+80153227 Msa1080620:three_prime_UTR
TGGTAGAGAACTTCTTCCAA+GGG 0.564592 7_2:-80153982 None:intergenic
TACGTGACCATTAGCTTGAA+GGG 0.566065 7_2:+80152463 Msa1080620:CDS
CTTGTTGTACTCATGAGAAG+TGG 0.569532 7_2:-80152259 None:intergenic
GATGAAGCTGAGAGATTACT+CGG 0.571310 7_2:+80153906 Msa1080620:three_prime_UTR
TGACCATTAGCTTGAAGGGT+CGG 0.573287 7_2:+80152467 Msa1080620:CDS
AACCTCATAATCAGTGTGAA+GGG 0.575517 7_2:-80153952 None:intergenic
TTGTCTTCTGTGAGGTCAAG+TGG 0.576356 7_2:-80152337 None:intergenic
TGTTATCATGGAAACATCAC+AGG 0.578970 7_2:+80153711 Msa1080620:three_prime_UTR
ATGGTAGAGAACTTCTTCCA+AGG 0.581069 7_2:-80153983 None:intergenic
TGTTGTGTAGAGTAACTGGT+AGG 0.593892 7_2:-80152196 None:intergenic
TTCAAGCTAATGGTCACGTA+AGG 0.597217 7_2:-80152460 None:intergenic
TGATTTGGGCAACGGTATAG+GGG 0.599868 7_2:+80154091 Msa1080620:three_prime_UTR
CAACCTCATAATCAGTGTGA+AGG 0.599974 7_2:-80153953 None:intergenic
GATAATTAGCAAGTCTGGCA+AGG 0.601106 7_2:-80152513 None:intergenic
TAGGGAGTGATAAGGTGACT+TGG 0.608066 7_2:+80154068 Msa1080620:three_prime_UTR
GTTGAACTGGTGGAGTTGGA+TGG 0.610128 7_2:+80152436 Msa1080620:CDS
AAGACTAGAATGTCTGAATG+AGG 0.614322 7_2:+80153103 Msa1080620:intron
ACCTCATAATCAGTGTGAAG+GGG 0.631211 7_2:-80153951 None:intergenic
GAGCATGTCTCTATCCCAGA+AGG 0.636939 7_2:+80152135 Msa1080620:exon
ACACGAAACAGCTCAACCAA+AGG 0.637467 7_2:-80152062 None:intergenic
CAGGCTTTGGTCGATGCTCG+AGG 0.637657 7_2:+80152367 Msa1080620:CDS
CACTTCTCATGAGTACAACA+AGG 0.638760 7_2:+80152260 Msa1080620:CDS
GTCTTACGTTGTCTTCTGTG+AGG 0.639028 7_2:-80152345 None:intergenic
GACAGGTGTAGTTGAACTGG+TGG 0.640631 7_2:+80152426 Msa1080620:CDS
CAACAAGGTGTATACTGCGA+AGG 0.641582 7_2:+80152275 Msa1080620:CDS
TACCAGAGACTGCATAGTCG+AGG 0.649684 7_2:-80153442 None:intergenic
TAAGAAGCTTGAAGCATCAG+TGG 0.650396 7_2:-80153596 None:intergenic
GAATAGATGTATTGGCCTAG+CGG 0.650539 7_2:-80153242 None:intergenic
GAAGTGGATAATTGAGCATG+TGG 0.651338 7_2:-80152243 None:intergenic
GTTGTGTAGAGTAACTGGTA+GGG 0.670609 7_2:-80152195 None:intergenic
GTGTAGAGTAACTGGTAGGG+TGG 0.682532 7_2:-80152192 None:intergenic
TCTTCTGTGAGGTCAAGTGG+CGG 0.692555 7_2:-80152334 None:intergenic
AAGTGGATAATTGAGCATGT+GGG 0.695100 7_2:-80152242 None:intergenic
GAGGCGTTGAAATGTTAATG+TGG 0.700092 7_2:+80153122 Msa1080620:three_prime_UTR
GGTAGAGAACTTCTTCCAAG+GGG 0.716092 7_2:-80153981 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTGTTTTATTTTTTTT+AGG + chr7_2:80152761-80152780 Msa1080620:intron 10.0%
!!! GTTTTTGTTTTATTTTTTTT+AGG + chr7_2:80152761-80152780 Msa1080620:intron 10.0%
!! TCAAAAAAGAAATCTAAATT+TGG + chr7_2:80152990-80153009 Msa1080620:intron 15.0%
!! CAAAAAAAATTAATGCATAT+AGG - chr7_2:80153081-80153100 None:intergenic 15.0%
!! TTGTGAACATTTAATAAATT+AGG + chr7_2:80153801-80153820 Msa1080620:three_prime_UTR 15.0%
!! TCAAAAAAGAAATCTAAATT+TGG + chr7_2:80152990-80153009 Msa1080620:intron 15.0%
!! CAAAAAAAATTAATGCATAT+AGG - chr7_2:80153081-80153100 None:intergenic 15.0%
!! TTGTGAACATTTAATAAATT+AGG + chr7_2:80153801-80153820 Msa1080620:three_prime_UTR 15.0%
!!! CTTGTTTACTTTTTATGTTT+TGG + chr7_2:80152636-80152655 Msa1080620:intron 20.0%
!! ATAAAACAAAAACCAAATAG+TGG - chr7_2:80152754-80152773 None:intergenic 20.0%
!! ACAGTTAATATTGATACATA+AGG - chr7_2:80152914-80152933 None:intergenic 20.0%
!! TTATGTATCAATATTAACTG+TGG + chr7_2:80152913-80152932 Msa1080620:intron 20.0%
!!! TAGAAATTATGCTTTTAAAG+CGG + chr7_2:80153170-80153189 Msa1080620:three_prime_UTR 20.0%
!! ATAATATCGAATAGATGTAT+TGG - chr7_2:80153253-80153272 None:intergenic 20.0%
!! ATTTAATATGCAAACTCAAA+AGG + chr7_2:80153336-80153355 Msa1080620:three_prime_UTR 20.0%
!!! AATTGTTTTAATTAGCAGTT+AGG + chr7_2:80153381-80153400 Msa1080620:three_prime_UTR 20.0%
!! AATAAATTAGGTGATAGTTT+CGG + chr7_2:80153813-80153832 Msa1080620:three_prime_UTR 20.0%
!! AATAAAAAGACACTGATATA+TGG - chr7_2:80153869-80153888 None:intergenic 20.0%
!!! CTTGTTTACTTTTTATGTTT+TGG + chr7_2:80152636-80152655 Msa1080620:intron 20.0%
!! ATAAAACAAAAACCAAATAG+TGG - chr7_2:80152754-80152773 None:intergenic 20.0%
!! ACAGTTAATATTGATACATA+AGG - chr7_2:80152914-80152933 None:intergenic 20.0%
!! TTATGTATCAATATTAACTG+TGG + chr7_2:80152913-80152932 Msa1080620:intron 20.0%
!!! TAGAAATTATGCTTTTAAAG+CGG + chr7_2:80153170-80153189 Msa1080620:three_prime_UTR 20.0%
!! ATAATATCGAATAGATGTAT+TGG - chr7_2:80153253-80153272 None:intergenic 20.0%
!! ATTTAATATGCAAACTCAAA+AGG + chr7_2:80153336-80153355 Msa1080620:three_prime_UTR 20.0%
!!! AATTGTTTTAATTAGCAGTT+AGG + chr7_2:80153381-80153400 Msa1080620:three_prime_UTR 20.0%
!! AATAAATTAGGTGATAGTTT+CGG + chr7_2:80153813-80153832 Msa1080620:three_prime_UTR 20.0%
!! AATAAAAAGACACTGATATA+TGG - chr7_2:80153869-80153888 None:intergenic 20.0%
!!! ACTTTTTATGTTTTGGTTTC+AGG + chr7_2:80152643-80152662 Msa1080620:intron 25.0%
! CATAGAAAACGAAAAACAAT+TGG + chr7_2:80152682-80152701 Msa1080620:CDS 25.0%
!!! ACTTTTTATGTTTTGGTTTC+AGG + chr7_2:80152643-80152662 Msa1080620:intron 25.0%
! CATAGAAAACGAAAAACAAT+TGG + chr7_2:80152682-80152701 Msa1080620:CDS 25.0%
TTTGTTTAGTTGAGTGCTTA+CGG + chr7_2:80152000-80152019 Msa1080620:five_prime_UTR 30.0%
! AACTCTTGCTATAGAAATTC+AGG + chr7_2:80152089-80152108 Msa1080620:five_prime_UTR 30.0%
! TTTGAGATAATTAGCAAGTC+TGG - chr7_2:80152521-80152540 None:intergenic 30.0%
!! GAAGTTTGCTTTTGCATTTT+GGG - chr7_2:80152604-80152623 None:intergenic 30.0%
!! TGAAGTTTGCTTTTGCATTT+TGG - chr7_2:80152605-80152624 None:intergenic 30.0%
ATAGTACCTTAGAAATTCTC+AGG - chr7_2:80152716-80152735 None:intergenic 30.0%
TGGATTCAATTCAAAAACAC+AGG + chr7_2:80153200-80153219 Msa1080620:three_prime_UTR 30.0%
GGATTCAATTCAAAAACACA+GGG + chr7_2:80153201-80153220 Msa1080620:three_prime_UTR 30.0%
AGGAAACAACAACTCTTAAA+AGG - chr7_2:80153425-80153444 None:intergenic 30.0%
AATTTGAGAAGCTTGGATAA+GGG + chr7_2:80153516-80153535 Msa1080620:three_prime_UTR 30.0%
ATCTTTCCTAGATATGAAAC+TGG + chr7_2:80153840-80153859 Msa1080620:three_prime_UTR 30.0%
ACACAAGTACAAAAAGAAGA+TGG - chr7_2:80154005-80154024 None:intergenic 30.0%
TCCTTAATTGATACAAGTGT+TGG + chr7_2:80154026-80154045 Msa1080620:three_prime_UTR 30.0%
ACCAACACTTGTATCAATTA+AGG - chr7_2:80154030-80154049 None:intergenic 30.0%
GTTGGTATCATTTGATCAAA+AGG + chr7_2:80154044-80154063 Msa1080620:three_prime_UTR 30.0%
TATCATTTGATCAAAAGGCT+AGG + chr7_2:80154049-80154068 Msa1080620:three_prime_UTR 30.0%
ATCATTTGATCAAAAGGCTA+GGG + chr7_2:80154050-80154069 Msa1080620:three_prime_UTR 30.0%
TTTGTTTAGTTGAGTGCTTA+CGG + chr7_2:80152000-80152019 Msa1080620:five_prime_UTR 30.0%
! AACTCTTGCTATAGAAATTC+AGG + chr7_2:80152089-80152108 Msa1080620:five_prime_UTR 30.0%
! TTTGAGATAATTAGCAAGTC+TGG - chr7_2:80152521-80152540 None:intergenic 30.0%
!! GAAGTTTGCTTTTGCATTTT+GGG - chr7_2:80152604-80152623 None:intergenic 30.0%
!! TGAAGTTTGCTTTTGCATTT+TGG - chr7_2:80152605-80152624 None:intergenic 30.0%
ATAGTACCTTAGAAATTCTC+AGG - chr7_2:80152716-80152735 None:intergenic 30.0%
TGGATTCAATTCAAAAACAC+AGG + chr7_2:80153200-80153219 Msa1080620:three_prime_UTR 30.0%
GGATTCAATTCAAAAACACA+GGG + chr7_2:80153201-80153220 Msa1080620:three_prime_UTR 30.0%
AGGAAACAACAACTCTTAAA+AGG - chr7_2:80153425-80153444 None:intergenic 30.0%
AATTTGAGAAGCTTGGATAA+GGG + chr7_2:80153516-80153535 Msa1080620:three_prime_UTR 30.0%
ATCTTTCCTAGATATGAAAC+TGG + chr7_2:80153840-80153859 Msa1080620:three_prime_UTR 30.0%
ACACAAGTACAAAAAGAAGA+TGG - chr7_2:80154005-80154024 None:intergenic 30.0%
TCCTTAATTGATACAAGTGT+TGG + chr7_2:80154026-80154045 Msa1080620:three_prime_UTR 30.0%
ACCAACACTTGTATCAATTA+AGG - chr7_2:80154030-80154049 None:intergenic 30.0%
GTTGGTATCATTTGATCAAA+AGG + chr7_2:80154044-80154063 Msa1080620:three_prime_UTR 30.0%
TATCATTTGATCAAAAGGCT+AGG + chr7_2:80154049-80154068 Msa1080620:three_prime_UTR 30.0%
ATCATTTGATCAAAAGGCTA+GGG + chr7_2:80154050-80154069 Msa1080620:three_prime_UTR 30.0%
TTGTTTAGTTGAGTGCTTAC+GGG + chr7_2:80152001-80152020 Msa1080620:five_prime_UTR 35.0%
ATATAGCAAGTGCAGATTGA+AGG + chr7_2:80152113-80152132 Msa1080620:five_prime_UTR 35.0%
AAGTGGATAATTGAGCATGT+GGG - chr7_2:80152245-80152264 None:intergenic 35.0%
ACTGAAAGAGATGCTGATAA+AGG - chr7_2:80152310-80152329 None:intergenic 35.0%
! TTGGTTTCAGGAGATTTTAG+AGG + chr7_2:80152655-80152674 Msa1080620:intron 35.0%
GATAGTCCTGAGAATTTCTA+AGG + chr7_2:80152707-80152726 Msa1080620:CDS 35.0%
! CTAAGGTACTATATTACGCA+CGG + chr7_2:80152724-80152743 Msa1080620:intron 35.0%
AAGACTAGAATGTCTGAATG+AGG + chr7_2:80153103-80153122 Msa1080620:intron 35.0%
CAATTTGAGAAGCTTGGATA+AGG + chr7_2:80153515-80153534 Msa1080620:three_prime_UTR 35.0%
ATTTGAGAAGCTTGGATAAG+GGG + chr7_2:80153517-80153536 Msa1080620:three_prime_UTR 35.0%
! CATCTGAGAGTATGTTATCA+TGG + chr7_2:80153699-80153718 Msa1080620:three_prime_UTR 35.0%
TGTTATCATGGAAACATCAC+AGG + chr7_2:80153711-80153730 Msa1080620:three_prime_UTR 35.0%
AACCTCATAATCAGTGTGAA+GGG - chr7_2:80153955-80153974 None:intergenic 35.0%
!! ATAAGGTGACTTGGTGATTT+GGG + chr7_2:80154077-80154096 Msa1080620:three_prime_UTR 35.0%
TTGTTTAGTTGAGTGCTTAC+GGG + chr7_2:80152001-80152020 Msa1080620:five_prime_UTR 35.0%
ATATAGCAAGTGCAGATTGA+AGG + chr7_2:80152113-80152132 Msa1080620:five_prime_UTR 35.0%
AAGTGGATAATTGAGCATGT+GGG - chr7_2:80152245-80152264 None:intergenic 35.0%
ACTGAAAGAGATGCTGATAA+AGG - chr7_2:80152310-80152329 None:intergenic 35.0%
! TTGGTTTCAGGAGATTTTAG+AGG + chr7_2:80152655-80152674 Msa1080620:intron 35.0%
GATAGTCCTGAGAATTTCTA+AGG + chr7_2:80152707-80152726 Msa1080620:CDS 35.0%
! CTAAGGTACTATATTACGCA+CGG + chr7_2:80152724-80152743 Msa1080620:intron 35.0%
AAGACTAGAATGTCTGAATG+AGG + chr7_2:80153103-80153122 Msa1080620:intron 35.0%
CAATTTGAGAAGCTTGGATA+AGG + chr7_2:80153515-80153534 Msa1080620:three_prime_UTR 35.0%
ATTTGAGAAGCTTGGATAAG+GGG + chr7_2:80153517-80153536 Msa1080620:three_prime_UTR 35.0%
! CATCTGAGAGTATGTTATCA+TGG + chr7_2:80153699-80153718 Msa1080620:three_prime_UTR 35.0%
TGTTATCATGGAAACATCAC+AGG + chr7_2:80153711-80153730 Msa1080620:three_prime_UTR 35.0%
AACCTCATAATCAGTGTGAA+GGG - chr7_2:80153955-80153974 None:intergenic 35.0%
!! ATAAGGTGACTTGGTGATTT+GGG + chr7_2:80154077-80154096 Msa1080620:three_prime_UTR 35.0%
GTTGTGTAGAGTAACTGGTA+GGG - chr7_2:80152198-80152217 None:intergenic 40.0%
TGTTGTGTAGAGTAACTGGT+AGG - chr7_2:80152199-80152218 None:intergenic 40.0%
AGGTTGTTGTGTAGAGTAAC+TGG - chr7_2:80152203-80152222 None:intergenic 40.0%
TAATTGAGCATGTGGGTGTT+GGG - chr7_2:80152238-80152257 None:intergenic 40.0%
ATAATTGAGCATGTGGGTGT+TGG - chr7_2:80152239-80152258 None:intergenic 40.0%
GAAGTGGATAATTGAGCATG+TGG - chr7_2:80152246-80152265 None:intergenic 40.0%
! CTTGTTGTACTCATGAGAAG+TGG - chr7_2:80152262-80152281 None:intergenic 40.0%
CACTTCTCATGAGTACAACA+AGG + chr7_2:80152260-80152279 Msa1080620:CDS 40.0%
CAGATCTTTGACACTTCTGT+TGG + chr7_2:80152400-80152419 Msa1080620:CDS 40.0%
TATGACAGGTGTAGTTGAAC+TGG + chr7_2:80152423-80152442 Msa1080620:CDS 40.0%
TTCAAGCTAATGGTCACGTA+AGG - chr7_2:80152463-80152482 None:intergenic 40.0%
! TTACGTGACCATTAGCTTGA+AGG + chr7_2:80152462-80152481 Msa1080620:CDS 40.0%
! TACGTGACCATTAGCTTGAA+GGG + chr7_2:80152463-80152482 Msa1080620:CDS 40.0%
GATAATTAGCAAGTCTGGCA+AGG - chr7_2:80152516-80152535 None:intergenic 40.0%
! AAAGAAGCACAAGAGAGAAG+AGG - chr7_2:80152561-80152580 None:intergenic 40.0%
!! GAGGCGTTGAAATGTTAATG+TGG + chr7_2:80153122-80153141 Msa1080620:three_prime_UTR 40.0%
GTCACGTCACTAATCAAACT+TGG - chr7_2:80153148-80153167 None:intergenic 40.0%
ATGAAAACAACTTTGCCGCT+AGG + chr7_2:80153227-80153246 Msa1080620:three_prime_UTR 40.0%
! GAATAGATGTATTGGCCTAG+CGG - chr7_2:80153245-80153264 None:intergenic 40.0%
CCAAGCTTCTCAAATTGAGA+AGG - chr7_2:80153512-80153531 None:intergenic 40.0%
CCTTCTCAATTTGAGAAGCT+TGG + chr7_2:80153509-80153528 Msa1080620:three_prime_UTR 40.0%
! TAAGAAGCTTGAAGCATCAG+TGG - chr7_2:80153599-80153618 None:intergenic 40.0%
TGGTCACCAGTTTCATATCT+AGG - chr7_2:80153849-80153868 None:intergenic 40.0%
GATGAAGCTGAGAGATTACT+CGG + chr7_2:80153906-80153925 Msa1080620:three_prime_UTR 40.0%
ACCTCATAATCAGTGTGAAG+GGG - chr7_2:80153954-80153973 None:intergenic 40.0%
CAACCTCATAATCAGTGTGA+AGG - chr7_2:80153956-80153975 None:intergenic 40.0%
! CTTCACACTGATTATGAGGT+TGG + chr7_2:80153954-80153973 Msa1080620:three_prime_UTR 40.0%
TGGTAGAGAACTTCTTCCAA+GGG - chr7_2:80153985-80154004 None:intergenic 40.0%
ATGGTAGAGAACTTCTTCCA+AGG - chr7_2:80153986-80154005 None:intergenic 40.0%
!! GATAAGGTGACTTGGTGATT+TGG + chr7_2:80154076-80154095 Msa1080620:three_prime_UTR 40.0%
GTTGTGTAGAGTAACTGGTA+GGG - chr7_2:80152198-80152217 None:intergenic 40.0%
TGTTGTGTAGAGTAACTGGT+AGG - chr7_2:80152199-80152218 None:intergenic 40.0%
AGGTTGTTGTGTAGAGTAAC+TGG - chr7_2:80152203-80152222 None:intergenic 40.0%
TAATTGAGCATGTGGGTGTT+GGG - chr7_2:80152238-80152257 None:intergenic 40.0%
ATAATTGAGCATGTGGGTGT+TGG - chr7_2:80152239-80152258 None:intergenic 40.0%
GAAGTGGATAATTGAGCATG+TGG - chr7_2:80152246-80152265 None:intergenic 40.0%
! CTTGTTGTACTCATGAGAAG+TGG - chr7_2:80152262-80152281 None:intergenic 40.0%
CACTTCTCATGAGTACAACA+AGG + chr7_2:80152260-80152279 Msa1080620:CDS 40.0%
CAGATCTTTGACACTTCTGT+TGG + chr7_2:80152400-80152419 Msa1080620:CDS 40.0%
TATGACAGGTGTAGTTGAAC+TGG + chr7_2:80152423-80152442 Msa1080620:CDS 40.0%
TTCAAGCTAATGGTCACGTA+AGG - chr7_2:80152463-80152482 None:intergenic 40.0%
! TTACGTGACCATTAGCTTGA+AGG + chr7_2:80152462-80152481 Msa1080620:CDS 40.0%
! TACGTGACCATTAGCTTGAA+GGG + chr7_2:80152463-80152482 Msa1080620:CDS 40.0%
GATAATTAGCAAGTCTGGCA+AGG - chr7_2:80152516-80152535 None:intergenic 40.0%
! AAAGAAGCACAAGAGAGAAG+AGG - chr7_2:80152561-80152580 None:intergenic 40.0%
!! GAGGCGTTGAAATGTTAATG+TGG + chr7_2:80153122-80153141 Msa1080620:three_prime_UTR 40.0%
GTCACGTCACTAATCAAACT+TGG - chr7_2:80153148-80153167 None:intergenic 40.0%
ATGAAAACAACTTTGCCGCT+AGG + chr7_2:80153227-80153246 Msa1080620:three_prime_UTR 40.0%
! GAATAGATGTATTGGCCTAG+CGG - chr7_2:80153245-80153264 None:intergenic 40.0%
CCAAGCTTCTCAAATTGAGA+AGG - chr7_2:80153512-80153531 None:intergenic 40.0%
CCTTCTCAATTTGAGAAGCT+TGG + chr7_2:80153509-80153528 Msa1080620:three_prime_UTR 40.0%
! TAAGAAGCTTGAAGCATCAG+TGG - chr7_2:80153599-80153618 None:intergenic 40.0%
TGGTCACCAGTTTCATATCT+AGG - chr7_2:80153849-80153868 None:intergenic 40.0%
GATGAAGCTGAGAGATTACT+CGG + chr7_2:80153906-80153925 Msa1080620:three_prime_UTR 40.0%
ACCTCATAATCAGTGTGAAG+GGG - chr7_2:80153954-80153973 None:intergenic 40.0%
CAACCTCATAATCAGTGTGA+AGG - chr7_2:80153956-80153975 None:intergenic 40.0%
! CTTCACACTGATTATGAGGT+TGG + chr7_2:80153954-80153973 Msa1080620:three_prime_UTR 40.0%
TGGTAGAGAACTTCTTCCAA+GGG - chr7_2:80153985-80154004 None:intergenic 40.0%
ATGGTAGAGAACTTCTTCCA+AGG - chr7_2:80153986-80154005 None:intergenic 40.0%
!! GATAAGGTGACTTGGTGATT+TGG + chr7_2:80154076-80154095 Msa1080620:three_prime_UTR 40.0%
!! GGAGTGTTGGGAATAGGATA+TGG - chr7_2:80152044-80152063 None:intergenic 45.0%
TCCTATTCCCAACACTCCTT+TGG + chr7_2:80152046-80152065 Msa1080620:five_prime_UTR 45.0%
!! ACCAAAGGAGTGTTGGGAAT+AGG - chr7_2:80152050-80152069 None:intergenic 45.0%
!! AGCTCAACCAAAGGAGTGTT+GGG - chr7_2:80152056-80152075 None:intergenic 45.0%
ACACGAAACAGCTCAACCAA+AGG - chr7_2:80152065-80152084 None:intergenic 45.0%
CAACAAGGTGTATACTGCGA+AGG + chr7_2:80152275-80152294 Msa1080620:CDS 45.0%
TTGTCTTCTGTGAGGTCAAG+TGG - chr7_2:80152340-80152359 None:intergenic 45.0%
GTCTTACGTTGTCTTCTGTG+AGG - chr7_2:80152348-80152367 None:intergenic 45.0%
CACAGAAGACAACGTAAGAC+AGG + chr7_2:80152348-80152367 Msa1080620:CDS 45.0%
AGACAACGTAAGACAGGCTT+TGG + chr7_2:80152354-80152373 Msa1080620:CDS 45.0%
GACACTTCTGTTGGTATGAC+AGG + chr7_2:80152409-80152428 Msa1080620:CDS 45.0%
TGTAGTTGAACTGGTGGAGT+TGG + chr7_2:80152432-80152451 Msa1080620:CDS 45.0%
! TGACCATTAGCTTGAAGGGT+CGG + chr7_2:80152467-80152486 Msa1080620:CDS 45.0%
AAACCGACCCTTCAAGCTAA+TGG - chr7_2:80152473-80152492 None:intergenic 45.0%
!! TTAGCTTGAAGGGTCGGTTT+TGG + chr7_2:80152473-80152492 Msa1080620:CDS 45.0%
ACAAGAGAGAAGAGGCTTAC+AGG - chr7_2:80152553-80152572 None:intergenic 45.0%
CACACCCTCAAATGCATACA+GGG - chr7_2:80152939-80152958 None:intergenic 45.0%
AGCTGAGAGATTACTCGGTT+AGG + chr7_2:80153911-80153930 Msa1080620:three_prime_UTR 45.0%
! TCCCCTTCACACTGATTATG+AGG + chr7_2:80153950-80153969 Msa1080620:three_prime_UTR 45.0%
GGTAGAGAACTTCTTCCAAG+GGG - chr7_2:80153984-80154003 None:intergenic 45.0%
CAAAAGGCTAGGGAGTGATA+AGG + chr7_2:80154060-80154079 Msa1080620:three_prime_UTR 45.0%
TAGGGAGTGATAAGGTGACT+TGG + chr7_2:80154068-80154087 Msa1080620:three_prime_UTR 45.0%
!! TGACTTGGTGATTTGGGCAA+CGG + chr7_2:80154083-80154102 Msa1080620:three_prime_UTR 45.0%
! GTGATTTGGGCAACGGTATA+GGG + chr7_2:80154090-80154109 Msa1080620:three_prime_UTR 45.0%
! TGATTTGGGCAACGGTATAG+GGG + chr7_2:80154091-80154110 Msa1080620:three_prime_UTR 45.0%
GTATAGGGGTTGGAGTGATA+AGG + chr7_2:80154105-80154124 Msa1080620:three_prime_UTR 45.0%
!! GGAGTGTTGGGAATAGGATA+TGG - chr7_2:80152044-80152063 None:intergenic 45.0%
TCCTATTCCCAACACTCCTT+TGG + chr7_2:80152046-80152065 Msa1080620:five_prime_UTR 45.0%
!! ACCAAAGGAGTGTTGGGAAT+AGG - chr7_2:80152050-80152069 None:intergenic 45.0%
!! AGCTCAACCAAAGGAGTGTT+GGG - chr7_2:80152056-80152075 None:intergenic 45.0%
ACACGAAACAGCTCAACCAA+AGG - chr7_2:80152065-80152084 None:intergenic 45.0%
CAACAAGGTGTATACTGCGA+AGG + chr7_2:80152275-80152294 Msa1080620:CDS 45.0%
TTGTCTTCTGTGAGGTCAAG+TGG - chr7_2:80152340-80152359 None:intergenic 45.0%
GTCTTACGTTGTCTTCTGTG+AGG - chr7_2:80152348-80152367 None:intergenic 45.0%
CACAGAAGACAACGTAAGAC+AGG + chr7_2:80152348-80152367 Msa1080620:CDS 45.0%
AGACAACGTAAGACAGGCTT+TGG + chr7_2:80152354-80152373 Msa1080620:CDS 45.0%
GACACTTCTGTTGGTATGAC+AGG + chr7_2:80152409-80152428 Msa1080620:CDS 45.0%
TGTAGTTGAACTGGTGGAGT+TGG + chr7_2:80152432-80152451 Msa1080620:CDS 45.0%
! TGACCATTAGCTTGAAGGGT+CGG + chr7_2:80152467-80152486 Msa1080620:CDS 45.0%
AAACCGACCCTTCAAGCTAA+TGG - chr7_2:80152473-80152492 None:intergenic 45.0%
!! TTAGCTTGAAGGGTCGGTTT+TGG + chr7_2:80152473-80152492 Msa1080620:CDS 45.0%
ACAAGAGAGAAGAGGCTTAC+AGG - chr7_2:80152553-80152572 None:intergenic 45.0%
CACACCCTCAAATGCATACA+GGG - chr7_2:80152939-80152958 None:intergenic 45.0%
AGCTGAGAGATTACTCGGTT+AGG + chr7_2:80153911-80153930 Msa1080620:three_prime_UTR 45.0%
! TCCCCTTCACACTGATTATG+AGG + chr7_2:80153950-80153969 Msa1080620:three_prime_UTR 45.0%
GGTAGAGAACTTCTTCCAAG+GGG - chr7_2:80153984-80154003 None:intergenic 45.0%
CAAAAGGCTAGGGAGTGATA+AGG + chr7_2:80154060-80154079 Msa1080620:three_prime_UTR 45.0%
TAGGGAGTGATAAGGTGACT+TGG + chr7_2:80154068-80154087 Msa1080620:three_prime_UTR 45.0%
!! TGACTTGGTGATTTGGGCAA+CGG + chr7_2:80154083-80154102 Msa1080620:three_prime_UTR 45.0%
! GTGATTTGGGCAACGGTATA+GGG + chr7_2:80154090-80154109 Msa1080620:three_prime_UTR 45.0%
! TGATTTGGGCAACGGTATAG+GGG + chr7_2:80154091-80154110 Msa1080620:three_prime_UTR 45.0%
! CAGCTCAACCAAAGGAGTGT+TGG - chr7_2:80152057-80152076 None:intergenic 50.0%
GAGCATGTCTCTATCCCAGA+AGG + chr7_2:80152135-80152154 Msa1080620:exon 50.0%
ACACAGTGACAGTGCCTTCT+GGG - chr7_2:80152152-80152171 None:intergenic 50.0%
AACACAGTGACAGTGCCTTC+TGG - chr7_2:80152153-80152172 None:intergenic 50.0%
GTGTAGAGTAACTGGTAGGG+TGG - chr7_2:80152195-80152214 None:intergenic 50.0%
! GTGTTGGGTGTCATGAATGG+AGG - chr7_2:80152223-80152242 None:intergenic 50.0%
!! TGGGTGTTGGGTGTCATGAA+TGG - chr7_2:80152226-80152245 None:intergenic 50.0%
TCTTCTGTGAGGTCAAGTGG+CGG - chr7_2:80152337-80152356 None:intergenic 50.0%
GACAGGTGTAGTTGAACTGG+TGG + chr7_2:80152426-80152445 Msa1080620:CDS 50.0%
GTTGAACTGGTGGAGTTGGA+TGG + chr7_2:80152436-80152455 Msa1080620:CDS 50.0%
TGTGGCCCTGTATGCATTTG+AGG + chr7_2:80152931-80152950 Msa1080620:intron 50.0%
GTGGCCCTGTATGCATTTGA+GGG + chr7_2:80152932-80152951 Msa1080620:intron 50.0%
GCACACCCTCAAATGCATAC+AGG - chr7_2:80152940-80152959 None:intergenic 50.0%
!!! GCTTTTAAAGCGGCGCAACA+TGG + chr7_2:80153180-80153199 Msa1080620:three_prime_UTR 50.0%
TTCCTCGACTATGCAGTCTC+TGG + chr7_2:80153440-80153459 Msa1080620:three_prime_UTR 50.0%
TACCAGAGACTGCATAGTCG+AGG - chr7_2:80153445-80153464 None:intergenic 50.0%
!! TATGAGGTTGGTACTCCCCT+TGG + chr7_2:80153966-80153985 Msa1080620:three_prime_UTR 50.0%
! GGTGATTTGGGCAACGGTAT+AGG + chr7_2:80154089-80154108 Msa1080620:three_prime_UTR 50.0%
! CAGCTCAACCAAAGGAGTGT+TGG - chr7_2:80152057-80152076 None:intergenic 50.0%
GAGCATGTCTCTATCCCAGA+AGG + chr7_2:80152135-80152154 Msa1080620:exon 50.0%
ACACAGTGACAGTGCCTTCT+GGG - chr7_2:80152152-80152171 None:intergenic 50.0%
AACACAGTGACAGTGCCTTC+TGG - chr7_2:80152153-80152172 None:intergenic 50.0%
GTGTAGAGTAACTGGTAGGG+TGG - chr7_2:80152195-80152214 None:intergenic 50.0%
! GTGTTGGGTGTCATGAATGG+AGG - chr7_2:80152223-80152242 None:intergenic 50.0%
!! TGGGTGTTGGGTGTCATGAA+TGG - chr7_2:80152226-80152245 None:intergenic 50.0%
TCTTCTGTGAGGTCAAGTGG+CGG - chr7_2:80152337-80152356 None:intergenic 50.0%
GACAGGTGTAGTTGAACTGG+TGG + chr7_2:80152426-80152445 Msa1080620:CDS 50.0%
GTTGAACTGGTGGAGTTGGA+TGG + chr7_2:80152436-80152455 Msa1080620:CDS 50.0%
TGTGGCCCTGTATGCATTTG+AGG + chr7_2:80152931-80152950 Msa1080620:intron 50.0%
GTGGCCCTGTATGCATTTGA+GGG + chr7_2:80152932-80152951 Msa1080620:intron 50.0%
GCACACCCTCAAATGCATAC+AGG - chr7_2:80152940-80152959 None:intergenic 50.0%
!!! GCTTTTAAAGCGGCGCAACA+TGG + chr7_2:80153180-80153199 Msa1080620:three_prime_UTR 50.0%
TTCCTCGACTATGCAGTCTC+TGG + chr7_2:80153440-80153459 Msa1080620:three_prime_UTR 50.0%
TACCAGAGACTGCATAGTCG+AGG - chr7_2:80153445-80153464 None:intergenic 50.0%
!! TATGAGGTTGGTACTCCCCT+TGG + chr7_2:80153966-80153985 Msa1080620:three_prime_UTR 50.0%
! GGTGATTTGGGCAACGGTAT+AGG + chr7_2:80154089-80154108 Msa1080620:three_prime_UTR 50.0%
ACGCACGGCTTGCCACTATT+TGG + chr7_2:80152739-80152758 Msa1080620:intron 55.0%
TTGGGCAACGGTATAGGGGT+TGG + chr7_2:80154095-80154114 Msa1080620:three_prime_UTR 55.0%
ACGCACGGCTTGCCACTATT+TGG + chr7_2:80152739-80152758 Msa1080620:intron 55.0%
TTGGGCAACGGTATAGGGGT+TGG + chr7_2:80154095-80154114 Msa1080620:three_prime_UTR 55.0%
! CAGGCTTTGGTCGATGCTCG+AGG + chr7_2:80152367-80152386 Msa1080620:CDS 60.0%
GTCGATGCTCGAGGTGAGCT+TGG + chr7_2:80152376-80152395 Msa1080620:CDS 60.0%
! CAGGCTTTGGTCGATGCTCG+AGG + chr7_2:80152367-80152386 Msa1080620:CDS 60.0%
GTCGATGCTCGAGGTGAGCT+TGG + chr7_2:80152376-80152395 Msa1080620:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 80151993 80154127 80151993 ID=Msa1080620;Name=Msa1080620
chr7_2 mRNA 80151993 80154127 80151993 ID=Msa1080620-mRNA-1;Parent=Msa1080620;Name=Msa1080620-mRNA-1;_AED=0.10;_eAED=0.10;_QI=146|1|1|1|0.5|0.33|3|1018|158
chr7_2 exon 80151993 80152552 80151993 ID=Msa1080620-mRNA-1:exon:20253;Parent=Msa1080620-mRNA-1
chr7_2 exon 80152665 80152728 80152665 ID=Msa1080620-mRNA-1:exon:20254;Parent=Msa1080620-mRNA-1
chr7_2 exon 80153111 80154127 80153111 ID=Msa1080620-mRNA-1:exon:20255;Parent=Msa1080620-mRNA-1
chr7_2 five_prime_UTR 80151993 80152138 80151993 ID=Msa1080620-mRNA-1:five_prime_utr;Parent=Msa1080620-mRNA-1
chr7_2 CDS 80152139 80152552 80152139 ID=Msa1080620-mRNA-1:cds;Parent=Msa1080620-mRNA-1
chr7_2 CDS 80152665 80152727 80152665 ID=Msa1080620-mRNA-1:cds;Parent=Msa1080620-mRNA-1
chr7_2 three_prime_UTR 80152728 80152728 80152728 ID=Msa1080620-mRNA-1:three_prime_utr;Parent=Msa1080620-mRNA-1
chr7_2 three_prime_UTR 80153111 80154127 80153111 ID=Msa1080620-mRNA-1:three_prime_utr;Parent=Msa1080620-mRNA-1
Gene Sequence

>Msa1080620

ATGTCTCTATCCCAGAAGGCACTGTCACTGTGTTGTAGCTCACTTAAACTATGCCACCCTACCAGTTACTCTACACAACAACCTCCATTCATGACACCCAACACCCACATGCTCAATTATCCACTTCTCATGAGTACAACAAGGTGTATACTGCGAAGGAAGTTGAAGCCTTTATCAGCATCTCTTTCAGTTGAACCGCCACTTGACCTCACAGAAGACAACGTAAGACAGGCTTTGGTCGATGCTCGAGGTGAGCTTGGTCAGATCTTTGACACTTCTGTTGGTATGACAGGTGTAGTTGAACTGGTGGAGTTGGATGGACCTTACGTGACCATTAGCTTGAAGGGTCGGTTTTGGCACAAACGTTCAACTGTCCTTGCCAGACTTGCTAATTATCTCAAACAGAGAATTCCTGAGATTTTAGAGGTTGACATAGAAAACGAAAAACAATTGGATGATAGTCCTGAGAATTTCTAA

Protein sequence

>Msa1080620

MSLSQKALSLCCSSLKLCHPTSYSTQQPPFMTPNTHMLNYPLLMSTTRCILRRKLKPLSASLSVEPPLDLTEDNVRQALVDARGELGQIFDTSVGMTGVVELVELDGPYVTISLKGRFWHKRSTVLARLANYLKQRIPEILEVDIENEKQLDDSPENF*