AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0848360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0848360 MtrunA17_Chr5g0409451 95.098 204 9 1 1 204 1 203 7.07e-143 396
Msa0848360 MtrunA17_Chr6g0469701 42.222 90 52 0 106 195 87 176 3.26e-20 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0848360 AT4G19100.1 65.089 169 59 0 35 203 45 213 2.71e-64 198
Msa0848360 AT4G19100.2 68.667 150 47 0 54 203 1 150 5.68e-59 182
Msa0848360 AT5G52780.1 43.333 90 51 0 106 195 76 165 2.94e-19 81.3

Find 53 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCCCTTTGGACCCTTTA+AGG 0.095561 5_4:+32775788 None:intergenic
AACAAAAGACCAACACTTAA+TGG 0.213710 5_4:+32775585 None:intergenic
AAAAGGGACCCTTCTCTTAA+TGG 0.223828 5_4:+32775426 None:intergenic
TGAAAATTGATGTGCCAAAT+TGG 0.226664 5_4:-32775530 Msa0848360:CDS
ACCTATACAAGCAACCTTAA+AGG 0.252062 5_4:-32775802 Msa0848360:CDS
ACAAGAAATGGAACCCAATT+TGG 0.284797 5_4:+32775516 None:intergenic
TTAAAGGGTCCAAAGGGATT+TGG 0.345555 5_4:-32775786 Msa0848360:CDS
AGTGAGAGTGAGATAATAAT+AGG 0.347057 5_4:+32776231 None:intergenic
TGGGATTGTTTCTGCTAGTT+GGG 0.348842 5_4:-32775451 Msa0848360:CDS
ATTAAGAGAAGGGTCCCTTT+TGG 0.356801 5_4:-32775424 Msa0848360:CDS
CCCTTTAAGGTTGCTTGTAT+AGG 0.369416 5_4:+32775801 None:intergenic
ATTATGAACTGCAGCATGTT+AGG 0.374937 5_4:-32775905 Msa0848360:intron
ATGGGATTGTTTCTGCTAGT+TGG 0.381471 5_4:-32775452 Msa0848360:CDS
TTAACTAATATAATCAAGTA+TGG 0.384790 5_4:+32775313 None:intergenic
ATTCTGTTTGTCACTACTTC+AGG 0.385394 5_4:+32775639 None:intergenic
TTAGTTAATCCATTTGTAGA+AGG 0.394092 5_4:-32775298 Msa0848360:three_prime_UTR
CCTATACAAGCAACCTTAAA+GGG 0.403014 5_4:-32775801 Msa0848360:CDS
ATGATGTTGGATTTAGACTT+TGG 0.404235 5_4:-32775232 Msa0848360:three_prime_UTR
AAGCTGATTCCTTCTACAAA+TGG 0.408001 5_4:+32775289 None:intergenic
AAGAAGAAAGACACAAGAAA+TGG 0.410807 5_4:+32775504 None:intergenic
GGGGAAGGTCCAAATCCCTT+TGG 0.413915 5_4:+32775777 None:intergenic
GTAGAATGGCATTGTCTGTT+GGG 0.421677 5_4:-32775611 Msa0848360:CDS
GGACTGAAGCTCAAAAGAAT+TGG 0.428750 5_4:-32775398 Msa0848360:CDS
GAAAATTGATGTGCCAAATT+GGG 0.437713 5_4:-32775529 Msa0848360:CDS
AATAGAGAAATGAGACTTGT+TGG 0.448276 5_4:+32775860 None:intergenic
ATAGGTGGCTCCAGAGGATA+AGG 0.462030 5_4:+32776249 None:intergenic
GAGCTTCAGTCCATCCCAAA+AGG 0.467198 5_4:+32775409 None:intergenic
GAAGAAGATAGAAGAGAGCA+AGG 0.472324 5_4:-32775669 Msa0848360:CDS
CATGGTATGATATGTGTTGA+TGG 0.475069 5_4:+32776153 None:intergenic
GTAGTGACAAACAGAATGAT+AGG 0.478411 5_4:-32775633 Msa0848360:CDS
TCCTTCACAACCTTATCCTC+TGG 0.480244 5_4:-32776259 Msa0848360:five_prime_UTR
ACTTAGAGGTGGATCTCAAA+AGG 0.491936 5_4:-32775358 Msa0848360:CDS
CAATCCACAATTTCTTCACA+AGG 0.492496 5_4:-32776101 Msa0848360:intron
TCTCACTCTCACTATTGTAC+CGG 0.495493 5_4:-32776221 Msa0848360:five_prime_UTR
GTTGGGATTCCATTAAGTGT+TGG 0.507152 5_4:-32775594 Msa0848360:CDS
GGAACCTTGTGAAGAAATTG+TGG 0.509384 5_4:+32776097 None:intergenic
AAACAGAATGATAGGTAGAA+TGG 0.509942 5_4:-32775625 Msa0848360:CDS
GGTAGAATGGCATTGTCTGT+TGG 0.525608 5_4:-32775612 Msa0848360:CDS
AGCTTCAGTCCATCCCAAAA+GGG 0.534187 5_4:+32775410 None:intergenic
TTGTGGATTGAGAATTGTAG+AGG 0.535900 5_4:+32776114 None:intergenic
GCAACCTTAAAGGGTCCAAA+GGG 0.543532 5_4:-32775792 Msa0848360:CDS
AAAGTCTAAATCCAACATCA+TGG 0.545422 5_4:+32775234 None:intergenic
GATGAAGATTACTATATAAG+TGG 0.547229 5_4:+32776175 None:intergenic
GTTGGGATCCATTAAGAGAA+GGG 0.567800 5_4:-32775434 Msa0848360:CDS
AGCAACCTTAAAGGGTCCAA+AGG 0.572031 5_4:-32775793 Msa0848360:CDS
CTCACTCTCACTATTGTACC+GGG 0.576390 5_4:-32776220 Msa0848360:five_prime_UTR
GGGAGTTGTAGTAGTCATCA+TGG 0.576576 5_4:+32776135 None:intergenic
TCCAGAGGATAAGGTTGTGA+AGG 0.578476 5_4:+32776258 None:intergenic
AGTTGGGATCCATTAAGAGA+AGG 0.593997 5_4:-32775435 Msa0848360:CDS
TGTGGATTGAGAATTGTAGA+GGG 0.635387 5_4:+32776115 None:intergenic
TGAGAGAAGTGAAACTGTGA+TGG 0.647990 5_4:+32775831 None:intergenic
ATAATAATAGGTGGCTCCAG+AGG 0.652384 5_4:+32776243 None:intergenic
GAGAGTGAGATAATAATAGG+TGG 0.664025 5_4:+32776234 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTAATAAAATGCAA+TGG + chr5_4:32776262-32776281 None:intergenic 10.0%
!!! CATTTTATTAAAAATAATGT+TGG - chr5_4:32776265-32776284 Msa0848360:five_prime_UTR 10.0%
!!! TTATTTTTAATAAAATGCAA+TGG + chr5_4:32776262-32776281 None:intergenic 10.0%
!! TCTTAAAATTGGTAAAATAA+CGG + chr5_4:32775375-32775394 None:intergenic 15.0%
!! GAAAACATAAATCTTAAAAT+TGG + chr5_4:32775386-32775405 None:intergenic 15.0%
!!! ACTTTAAGATAGTAAAAAAA+TGG + chr5_4:32775878-32775897 None:intergenic 15.0%
!!! TTTTTTTACTATCTTAAAGT+TGG - chr5_4:32775878-32775897 Msa0848360:CDS 15.0%
!! TTAACTAATATAATCAAGTA+TGG + chr5_4:32776123-32776142 None:intergenic 15.0%
!! TCTTAAAATTGGTAAAATAA+CGG + chr5_4:32775375-32775394 None:intergenic 15.0%
!! GAAAACATAAATCTTAAAAT+TGG + chr5_4:32775386-32775405 None:intergenic 15.0%
!!! ACTTTAAGATAGTAAAAAAA+TGG + chr5_4:32775878-32775897 None:intergenic 15.0%
!!! TTTTTTTACTATCTTAAAGT+TGG - chr5_4:32775878-32775897 Msa0848360:CDS 15.0%
!! TTAACTAATATAATCAAGTA+TGG + chr5_4:32776123-32776142 None:intergenic 15.0%
!! CTTAAAATTGGTAAAATAAC+GGG + chr5_4:32775374-32775393 None:intergenic 20.0%
!!! TTTTTCTATGCTTAAAAATG+AGG + chr5_4:32775415-32775434 None:intergenic 20.0%
!! TAGAAAAATATCAACAACTT+AGG - chr5_4:32775427-32775446 Msa0848360:CDS 20.0%
!!! TTGTCTTGTTTTTTTTCTTT+GGG + chr5_4:32775679-32775698 None:intergenic 20.0%
!!! ATTGTCTTGTTTTTTTTCTT+TGG + chr5_4:32775680-32775699 None:intergenic 20.0%
!! CTTAAAATTGGTAAAATAAC+GGG + chr5_4:32775374-32775393 None:intergenic 20.0%
!!! TTTTTCTATGCTTAAAAATG+AGG + chr5_4:32775415-32775434 None:intergenic 20.0%
!! TAGAAAAATATCAACAACTT+AGG - chr5_4:32775427-32775446 Msa0848360:CDS 20.0%
!!! TTGTCTTGTTTTTTTTCTTT+GGG + chr5_4:32775679-32775698 None:intergenic 20.0%
!!! ATTGTCTTGTTTTTTTTCTT+TGG + chr5_4:32775680-32775699 None:intergenic 20.0%
! GATGAAGATTACTATATAAG+TGG + chr5_4:32775261-32775280 None:intergenic 25.0%
!! AATAACGGGAAATAAATAGA+AGG + chr5_4:32775360-32775379 None:intergenic 25.0%
!!! TGTCTTGTTTTTTTTCTTTG+GGG + chr5_4:32775678-32775697 None:intergenic 25.0%
!!! TTGTGTCTTTCTTCTTTTTT+GGG - chr5_4:32775936-32775955 Msa0848360:intron 25.0%
! TTAGTTAATCCATTTGTAGA+AGG - chr5_4:32776135-32776154 Msa0848360:CDS 25.0%
! GATGAAGATTACTATATAAG+TGG + chr5_4:32775261-32775280 None:intergenic 25.0%
!! AATAACGGGAAATAAATAGA+AGG + chr5_4:32775360-32775379 None:intergenic 25.0%
!!! TGTCTTGTTTTTTTTCTTTG+GGG + chr5_4:32775678-32775697 None:intergenic 25.0%
!!! TTGTGTCTTTCTTCTTTTTT+GGG - chr5_4:32775936-32775955 Msa0848360:intron 25.0%
! TTAGTTAATCCATTTGTAGA+AGG - chr5_4:32776135-32776154 Msa0848360:CDS 25.0%
AGTGAGAGTGAGATAATAAT+AGG + chr5_4:32775205-32775224 None:intergenic 30.0%
!!! TTTATTTTTGAGTAGAGACC+CGG + chr5_4:32775234-32775253 None:intergenic 30.0%
ATATCAACAACTTAGGAACT+AGG - chr5_4:32775434-32775453 Msa0848360:CDS 30.0%
AATAGAGAAATGAGACTTGT+TGG + chr5_4:32775576-32775595 None:intergenic 30.0%
!!! TTGTTTTTTTTCTTTGGGGA+AGG + chr5_4:32775674-32775693 None:intergenic 30.0%
!!! CTTGTTGTTTGTTCTTTTTG+AGG + chr5_4:32775709-32775728 None:intergenic 30.0%
AAACAGAATGATAGGTAGAA+TGG - chr5_4:32775808-32775827 Msa0848360:CDS 30.0%
AACAAAAGACCAACACTTAA+TGG + chr5_4:32775851-32775870 None:intergenic 30.0%
TGAAAATTGATGTGCCAAAT+TGG - chr5_4:32775903-32775922 Msa0848360:intron 30.0%
GAAAATTGATGTGCCAAATT+GGG - chr5_4:32775904-32775923 Msa0848360:intron 30.0%
AAGAAGAAAGACACAAGAAA+TGG + chr5_4:32775932-32775951 None:intergenic 30.0%
!!! CTTGTGTCTTTCTTCTTTTT+TGG - chr5_4:32775935-32775954 Msa0848360:intron 30.0%
!!! AAAAGAATTGGCCTGTTTTT+TGG - chr5_4:32776047-32776066 Msa0848360:intron 30.0%
CTAAGTGATTTCCAAAAAAC+AGG + chr5_4:32776061-32776080 None:intergenic 30.0%
!!! GTTTTTTGGAAATCACTTAG+AGG - chr5_4:32776061-32776080 Msa0848360:intron 30.0%
! TCAATTTTAGACCATGATGT+TGG - chr5_4:32776188-32776207 Msa0848360:five_prime_UTR 30.0%
AAAGTCTAAATCCAACATCA+TGG + chr5_4:32776202-32776221 None:intergenic 30.0%
ATGATGTTGGATTTAGACTT+TGG - chr5_4:32776201-32776220 Msa0848360:five_prime_UTR 30.0%
AGTGAGAGTGAGATAATAAT+AGG + chr5_4:32775205-32775224 None:intergenic 30.0%
!!! TTTATTTTTGAGTAGAGACC+CGG + chr5_4:32775234-32775253 None:intergenic 30.0%
ATATCAACAACTTAGGAACT+AGG - chr5_4:32775434-32775453 Msa0848360:CDS 30.0%
AATAGAGAAATGAGACTTGT+TGG + chr5_4:32775576-32775595 None:intergenic 30.0%
!!! TTGTTTTTTTTCTTTGGGGA+AGG + chr5_4:32775674-32775693 None:intergenic 30.0%
!!! CTTGTTGTTTGTTCTTTTTG+AGG + chr5_4:32775709-32775728 None:intergenic 30.0%
AAACAGAATGATAGGTAGAA+TGG - chr5_4:32775808-32775827 Msa0848360:CDS 30.0%
AACAAAAGACCAACACTTAA+TGG + chr5_4:32775851-32775870 None:intergenic 30.0%
TGAAAATTGATGTGCCAAAT+TGG - chr5_4:32775903-32775922 Msa0848360:intron 30.0%
GAAAATTGATGTGCCAAATT+GGG - chr5_4:32775904-32775923 Msa0848360:intron 30.0%
AAGAAGAAAGACACAAGAAA+TGG + chr5_4:32775932-32775951 None:intergenic 30.0%
!!! CTTGTGTCTTTCTTCTTTTT+TGG - chr5_4:32775935-32775954 Msa0848360:intron 30.0%
!!! AAAAGAATTGGCCTGTTTTT+TGG - chr5_4:32776047-32776066 Msa0848360:intron 30.0%
CTAAGTGATTTCCAAAAAAC+AGG + chr5_4:32776061-32776080 None:intergenic 30.0%
!!! GTTTTTTGGAAATCACTTAG+AGG - chr5_4:32776061-32776080 Msa0848360:intron 30.0%
! TCAATTTTAGACCATGATGT+TGG - chr5_4:32776188-32776207 Msa0848360:five_prime_UTR 30.0%
AAAGTCTAAATCCAACATCA+TGG + chr5_4:32776202-32776221 None:intergenic 30.0%
ATGATGTTGGATTTAGACTT+TGG - chr5_4:32776201-32776220 Msa0848360:five_prime_UTR 30.0%
GAGAGTGAGATAATAATAGG+TGG + chr5_4:32775202-32775221 None:intergenic 35.0%
CATGGTATGATATGTGTTGA+TGG + chr5_4:32775283-32775302 None:intergenic 35.0%
! TGTGGATTGAGAATTGTAGA+GGG + chr5_4:32775321-32775340 None:intergenic 35.0%
! TTGTGGATTGAGAATTGTAG+AGG + chr5_4:32775322-32775341 None:intergenic 35.0%
CAATCCACAATTTCTTCACA+AGG - chr5_4:32775332-32775351 Msa0848360:three_prime_UTR 35.0%
ATTATGAACTGCAGCATGTT+AGG - chr5_4:32775528-32775547 Msa0848360:CDS 35.0%
ACCTATACAAGCAACCTTAA+AGG - chr5_4:32775631-32775650 Msa0848360:CDS 35.0%
CCTATACAAGCAACCTTAAA+GGG - chr5_4:32775632-32775651 Msa0848360:CDS 35.0%
ATTCTGTTTGTCACTACTTC+AGG + chr5_4:32775797-32775816 None:intergenic 35.0%
GTAGTGACAAACAGAATGAT+AGG - chr5_4:32775800-32775819 Msa0848360:CDS 35.0%
ACAAGAAATGGAACCCAATT+TGG + chr5_4:32775920-32775939 None:intergenic 35.0%
!!! TTTTTTGGGTCTGCACTTTT+AGG - chr5_4:32775950-32775969 Msa0848360:intron 35.0%
!! CACTTTTAGGAGTGAGTTAT+GGG - chr5_4:32775963-32775982 Msa0848360:intron 35.0%
!! TTTTGGAAATCACTTAGAGG+TGG - chr5_4:32776064-32776083 Msa0848360:intron 35.0%
! AAGCTGATTCCTTCTACAAA+TGG + chr5_4:32776147-32776166 None:intergenic 35.0%
GAGAGTGAGATAATAATAGG+TGG + chr5_4:32775202-32775221 None:intergenic 35.0%
CATGGTATGATATGTGTTGA+TGG + chr5_4:32775283-32775302 None:intergenic 35.0%
! TGTGGATTGAGAATTGTAGA+GGG + chr5_4:32775321-32775340 None:intergenic 35.0%
! TTGTGGATTGAGAATTGTAG+AGG + chr5_4:32775322-32775341 None:intergenic 35.0%
CAATCCACAATTTCTTCACA+AGG - chr5_4:32775332-32775351 Msa0848360:three_prime_UTR 35.0%
ATTATGAACTGCAGCATGTT+AGG - chr5_4:32775528-32775547 Msa0848360:CDS 35.0%
ACCTATACAAGCAACCTTAA+AGG - chr5_4:32775631-32775650 Msa0848360:CDS 35.0%
CCTATACAAGCAACCTTAAA+GGG - chr5_4:32775632-32775651 Msa0848360:CDS 35.0%
ATTCTGTTTGTCACTACTTC+AGG + chr5_4:32775797-32775816 None:intergenic 35.0%
GTAGTGACAAACAGAATGAT+AGG - chr5_4:32775800-32775819 Msa0848360:CDS 35.0%
ACAAGAAATGGAACCCAATT+TGG + chr5_4:32775920-32775939 None:intergenic 35.0%
!!! TTTTTTGGGTCTGCACTTTT+AGG - chr5_4:32775950-32775969 Msa0848360:intron 35.0%
!! CACTTTTAGGAGTGAGTTAT+GGG - chr5_4:32775963-32775982 Msa0848360:intron 35.0%
!! TTTTGGAAATCACTTAGAGG+TGG - chr5_4:32776064-32776083 Msa0848360:intron 35.0%
! AAGCTGATTCCTTCTACAAA+TGG + chr5_4:32776147-32776166 None:intergenic 35.0%
ATAATAATAGGTGGCTCCAG+AGG + chr5_4:32775193-32775212 None:intergenic 40.0%
TCTCACTCTCACTATTGTAC+CGG - chr5_4:32775212-32775231 Msa0848360:three_prime_UTR 40.0%
GGAACCTTGTGAAGAAATTG+TGG + chr5_4:32775339-32775358 None:intergenic 40.0%
GAACTAGGATAGTACTGCAT+AGG - chr5_4:32775449-32775468 Msa0848360:CDS 40.0%
TGAGAGAAGTGAAACTGTGA+TGG + chr5_4:32775605-32775624 None:intergenic 40.0%
!! CCCTTTAAGGTTGCTTGTAT+AGG + chr5_4:32775635-32775654 None:intergenic 40.0%
AAATCCCTTTGGACCCTTTA+AGG + chr5_4:32775648-32775667 None:intergenic 40.0%
TTAAAGGGTCCAAAGGGATT+TGG - chr5_4:32775647-32775666 Msa0848360:CDS 40.0%
GAAGAAGATAGAAGAGAGCA+AGG - chr5_4:32775764-32775783 Msa0848360:CDS 40.0%
GTAGAATGGCATTGTCTGTT+GGG - chr5_4:32775822-32775841 Msa0848360:CDS 40.0%
GTTGGGATTCCATTAAGTGT+TGG - chr5_4:32775839-32775858 Msa0848360:CDS 40.0%
!! GCACTTTTAGGAGTGAGTTA+TGG - chr5_4:32775962-32775981 Msa0848360:intron 40.0%
!! ATGGGATTGTTTCTGCTAGT+TGG - chr5_4:32775981-32776000 Msa0848360:intron 40.0%
!! TGGGATTGTTTCTGCTAGTT+GGG - chr5_4:32775982-32776001 Msa0848360:intron 40.0%
AGTTGGGATCCATTAAGAGA+AGG - chr5_4:32775998-32776017 Msa0848360:intron 40.0%
GTTGGGATCCATTAAGAGAA+GGG - chr5_4:32775999-32776018 Msa0848360:intron 40.0%
AAAAGGGACCCTTCTCTTAA+TGG + chr5_4:32776010-32776029 None:intergenic 40.0%
! ATTAAGAGAAGGGTCCCTTT+TGG - chr5_4:32776009-32776028 Msa0848360:intron 40.0%
! TTAAGAGAAGGGTCCCTTTT+GGG - chr5_4:32776010-32776029 Msa0848360:intron 40.0%
GGACTGAAGCTCAAAAGAAT+TGG - chr5_4:32776035-32776054 Msa0848360:intron 40.0%
ACTTAGAGGTGGATCTCAAA+AGG - chr5_4:32776075-32776094 Msa0848360:intron 40.0%
ATAATAATAGGTGGCTCCAG+AGG + chr5_4:32775193-32775212 None:intergenic 40.0%
TCTCACTCTCACTATTGTAC+CGG - chr5_4:32775212-32775231 Msa0848360:three_prime_UTR 40.0%
GGAACCTTGTGAAGAAATTG+TGG + chr5_4:32775339-32775358 None:intergenic 40.0%
GAACTAGGATAGTACTGCAT+AGG - chr5_4:32775449-32775468 Msa0848360:CDS 40.0%
TGAGAGAAGTGAAACTGTGA+TGG + chr5_4:32775605-32775624 None:intergenic 40.0%
!! CCCTTTAAGGTTGCTTGTAT+AGG + chr5_4:32775635-32775654 None:intergenic 40.0%
AAATCCCTTTGGACCCTTTA+AGG + chr5_4:32775648-32775667 None:intergenic 40.0%
TTAAAGGGTCCAAAGGGATT+TGG - chr5_4:32775647-32775666 Msa0848360:CDS 40.0%
GAAGAAGATAGAAGAGAGCA+AGG - chr5_4:32775764-32775783 Msa0848360:CDS 40.0%
GTAGAATGGCATTGTCTGTT+GGG - chr5_4:32775822-32775841 Msa0848360:CDS 40.0%
GTTGGGATTCCATTAAGTGT+TGG - chr5_4:32775839-32775858 Msa0848360:CDS 40.0%
!! GCACTTTTAGGAGTGAGTTA+TGG - chr5_4:32775962-32775981 Msa0848360:intron 40.0%
!! ATGGGATTGTTTCTGCTAGT+TGG - chr5_4:32775981-32776000 Msa0848360:intron 40.0%
!! TGGGATTGTTTCTGCTAGTT+GGG - chr5_4:32775982-32776001 Msa0848360:intron 40.0%
AGTTGGGATCCATTAAGAGA+AGG - chr5_4:32775998-32776017 Msa0848360:intron 40.0%
GTTGGGATCCATTAAGAGAA+GGG - chr5_4:32775999-32776018 Msa0848360:intron 40.0%
AAAAGGGACCCTTCTCTTAA+TGG + chr5_4:32776010-32776029 None:intergenic 40.0%
! ATTAAGAGAAGGGTCCCTTT+TGG - chr5_4:32776009-32776028 Msa0848360:intron 40.0%
! TTAAGAGAAGGGTCCCTTTT+GGG - chr5_4:32776010-32776029 Msa0848360:intron 40.0%
GGACTGAAGCTCAAAAGAAT+TGG - chr5_4:32776035-32776054 Msa0848360:intron 40.0%
ACTTAGAGGTGGATCTCAAA+AGG - chr5_4:32776075-32776094 Msa0848360:intron 40.0%
TCCTTCACAACCTTATCCTC+TGG - chr5_4:32775174-32775193 Msa0848360:three_prime_UTR 45.0%
TCCAGAGGATAAGGTTGTGA+AGG + chr5_4:32775178-32775197 None:intergenic 45.0%
CTCACTCTCACTATTGTACC+GGG - chr5_4:32775213-32775232 Msa0848360:three_prime_UTR 45.0%
GGGAGTTGTAGTAGTCATCA+TGG + chr5_4:32775301-32775320 None:intergenic 45.0%
AGCAACCTTAAAGGGTCCAA+AGG - chr5_4:32775640-32775659 Msa0848360:CDS 45.0%
GCAACCTTAAAGGGTCCAAA+GGG - chr5_4:32775641-32775660 Msa0848360:CDS 45.0%
GGTAGAATGGCATTGTCTGT+TGG - chr5_4:32775821-32775840 Msa0848360:CDS 45.0%
AGCTTCAGTCCATCCCAAAA+GGG + chr5_4:32776026-32776045 None:intergenic 45.0%
TCCTTCACAACCTTATCCTC+TGG - chr5_4:32775174-32775193 Msa0848360:three_prime_UTR 45.0%
TCCAGAGGATAAGGTTGTGA+AGG + chr5_4:32775178-32775197 None:intergenic 45.0%
CTCACTCTCACTATTGTACC+GGG - chr5_4:32775213-32775232 Msa0848360:three_prime_UTR 45.0%
GGGAGTTGTAGTAGTCATCA+TGG + chr5_4:32775301-32775320 None:intergenic 45.0%
AGCAACCTTAAAGGGTCCAA+AGG - chr5_4:32775640-32775659 Msa0848360:CDS 45.0%
GCAACCTTAAAGGGTCCAAA+GGG - chr5_4:32775641-32775660 Msa0848360:CDS 45.0%
GGTAGAATGGCATTGTCTGT+TGG - chr5_4:32775821-32775840 Msa0848360:CDS 45.0%
AGCTTCAGTCCATCCCAAAA+GGG + chr5_4:32776026-32776045 None:intergenic 45.0%
ATAGGTGGCTCCAGAGGATA+AGG + chr5_4:32775187-32775206 None:intergenic 50.0%
GAGCTTCAGTCCATCCCAAA+AGG + chr5_4:32776027-32776046 None:intergenic 50.0%
ATAGGTGGCTCCAGAGGATA+AGG + chr5_4:32775187-32775206 None:intergenic 50.0%
GAGCTTCAGTCCATCCCAAA+AGG + chr5_4:32776027-32776046 None:intergenic 50.0%
GGGGAAGGTCCAAATCCCTT+TGG + chr5_4:32775659-32775678 None:intergenic 55.0%
!! GAGAAGGGTCCCTTTTGGGA+TGG - chr5_4:32776014-32776033 Msa0848360:intron 55.0%
GGGGAAGGTCCAAATCCCTT+TGG + chr5_4:32775659-32775678 None:intergenic 55.0%
!! GAGAAGGGTCCCTTTTGGGA+TGG - chr5_4:32776014-32776033 Msa0848360:intron 55.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 32775168 32776287 32775168 ID=Msa0848360;Name=Msa0848360
chr5_4 mRNA 32775168 32776287 32775168 ID=Msa0848360-mRNA-1;Parent=Msa0848360;Name=Msa0848360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=132|1|1|1|1|1|2|185|204
chr5_4 exon 32775168 32775913 32775168 ID=Msa0848360-mRNA-1:exon:11464;Parent=Msa0848360-mRNA-1
chr5_4 exon 32776102 32776287 32776102 ID=Msa0848360-mRNA-1:exon:11463;Parent=Msa0848360-mRNA-1
chr5_4 five_prime_UTR 32776156 32776287 32776156 ID=Msa0848360-mRNA-1:five_prime_utr;Parent=Msa0848360-mRNA-1
chr5_4 CDS 32776102 32776155 32776102 ID=Msa0848360-mRNA-1:cds;Parent=Msa0848360-mRNA-1
chr5_4 CDS 32775353 32775913 32775353 ID=Msa0848360-mRNA-1:cds;Parent=Msa0848360-mRNA-1
chr5_4 three_prime_UTR 32775168 32775352 32775168 ID=Msa0848360-mRNA-1:three_prime_utr;Parent=Msa0848360-mRNA-1
Gene Sequence

>Msa0848360

ATGATGACTACTACAACTCCCTCTACAATTCTCAATCCACAATTTCTTCACAAGCATGTTAGGCACAACAACATTTATATACTCACCAACAAGTCTCATTTCTCTATTCATAGACCATCACAGTTTCACTTCTCTCACATTGTACCTATACAAGCAACCTTAAAGGGTCCAAAGGGATTTGGACCTTCCCCAAAGAAAAAAAACAAGACAATCAAGAACCTCAAAAAGAACAAACAACAAGAAGATAATGATGAAGAAGACGATGAAGATGAAGAAGAAGAAGATAGAAGAGAGCAAGGAATCATTCCTGAAGTAGTGACAAACAGAATGATAGGTAGAATGGCATTGTCTGTTGGGATTCCATTAAGTGTTGGTCTTTTGTTCTTTCCATTTTTTTACTATCTTAAAGTTGGTTTGAAAATTGATGTGCCAAATTGGGTTCCATTTCTTGTGTCTTTCTTCTTTTTTGGGTCTGCACTTTTAGGAGTGAGTTATGGGATTGTTTCTGCTAGTTGGGATCCATTAAGAGAAGGGTCCCTTTTGGGATGGACTGAAGCTCAAAAGAATTGGCCTGTTTTTTGGAAATCACTTAGAGGTGGATCTCAAAAGGATTAG

Protein sequence

>Msa0848360

MMTTTTPSTILNPQFLHKHVRHNNIYILTNKSHFSIHRPSQFHFSHIVPIQATLKGPKGFGPSPKKKNKTIKNLKKNKQQEDNDEEDDEDEEEEDRREQGIIPEVVTNRMIGRMALSVGIPLSVGLLFFPFFYYLKVGLKIDVPNWVPFLVSFFFFGSALLGVSYGIVSASWDPLREGSLLGWTEAQKNWPVFWKSLRGGSQKD*